Human Gene SLC35E2 (uc001ahy.3) Description and Page Index
  Description: Homo sapiens solute carrier family 35, member E2 (SLC35E2), transcript variant 2, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr1:1,656,277-1,677,438 Size: 21,162 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr1:1,656,853-1,670,996 Size: 14,144 Coding Exon Count: 5 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:1,656,277-1,677,438)mRNA (may differ from genome)Protein (246 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerGeneCardsHGNCLynx
MGIPubMedStanford SOURCETreefamUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.63 RPKM in Brain - Cerebellum
Total median expression: 109.61 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -403.70841-0.480 Picture PostScript Text
3' UTR -195.81576-0.340 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF03151 - Triose-phosphate Transporter family

ModBase Predicted Comparative 3D Structure on P0CK97-2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC110653 - Homo sapiens similar to solute carrier family 35, member E2, mRNA (cDNA clone MGC:117254 IMAGE:4392812), complete cds.
AB209095 - Homo sapiens mRNA for cell division cycle 2-like 2 isoform 4 variant protein.
BC062371 - Homo sapiens solute carrier family 35, member E2, mRNA (cDNA clone IMAGE:3845538), partial cds.
AL049665 - Human gene from PAC 283E3, chromosome 1.
BC101666 - Homo sapiens solute carrier family 35, member E2, mRNA (cDNA clone MGC:126715 IMAGE:8069172), complete cds.
BC112289 - Homo sapiens solute carrier family 35, member E2, mRNA (cDNA clone MGC:138494 IMAGE:8327757), complete cds.
HQ258570 - Synthetic construct Homo sapiens clone IMAGE:100073089 solute carrier family 35, member E2 (SLC35E2) gene, encodes complete protein.
KJ892873 - Synthetic construct Homo sapiens clone ccsbBroadEn_02267 SLC35E2 gene, encodes complete protein.
JD383022 - Sequence 364046 from Patent EP1572962.
JD090174 - Sequence 71198 from Patent EP1572962.
JD498046 - Sequence 479070 from Patent EP1572962.
JD409551 - Sequence 390575 from Patent EP1572962.
JD058021 - Sequence 39045 from Patent EP1572962.
JD100866 - Sequence 81890 from Patent EP1572962.
JD247163 - Sequence 228187 from Patent EP1572962.
JD487040 - Sequence 468064 from Patent EP1572962.
JD210166 - Sequence 191190 from Patent EP1572962.
JD400167 - Sequence 381191 from Patent EP1572962.
JD565129 - Sequence 546153 from Patent EP1572962.
JD404100 - Sequence 385124 from Patent EP1572962.
JD178248 - Sequence 159272 from Patent EP1572962.
JD253454 - Sequence 234478 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NM_001199787, NP_001186716, P0CK97-2
UCSC ID: uc001ahy.3
RefSeq Accession: NM_001199787
Protein: P0CK97-2, splice isoform of P0CK97 CCDS: CCDS55560.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001199787.1
exon count: 7CDS single in 3' UTR: no RNA size: 2177
ORF size: 741CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1155.00frame shift in genome: no % Coverage: 99.13
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.