Human Gene MDS2 (uc001bhi.3) Description and Page Index
  Description: Homo sapiens myelodysplastic syndrome 2 translocation associated (MDS2), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr1:23,907,985-23,967,056 Size: 59,072 Total Exon Count: 7 Strand: +


Page IndexSequence and LinksMalaCardsCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:23,907,985-23,967,056)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerHGNCLynxPubMedStanford SOURCE

-  MalaCards Disease Associations
  MalaCards Gene Search: MDS2
Diseases sorted by gene-association score: myelodysplastic syndrome (18), chronic ulcer of skin (2), decubitus ulcer (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.47 RPKM in Thyroid
Total median expression: 2.24 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC041472 - Homo sapiens myelodysplastic syndrome 2 translocation associated, mRNA (cDNA clone IMAGE:5229269).
JD163470 - Sequence 144494 from Patent EP1572962.
JD554470 - Sequence 535494 from Patent EP1572962.
AJ310434 - Homo sapiens MDS2 gene.
BC069164 - Homo sapiens cDNA clone IMAGE:7216993.
JD204752 - Sequence 185776 from Patent EP1572962.
JD441621 - Sequence 422645 from Patent EP1572962.
JD102624 - Sequence 83648 from Patent EP1572962.
JD160112 - Sequence 141136 from Patent EP1572962.
JD246467 - Sequence 227491 from Patent EP1572962.
JD099549 - Sequence 80573 from Patent EP1572962.
JD383751 - Sequence 364775 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC041472
UCSC ID: uc001bhi.3
RefSeq Accession: NR_027042

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: BC041472.1
exon count: 7CDS single in 3' UTR: no RNA size: 1810
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 17.00frame shift in genome: no % Coverage: 98.29
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.