Human Gene MEAF6 (uc001cbh.2) Description and Page Index
  Description: Homo sapiens MYST/Esa1-associated factor 6 (MEAF6), transcript variant 4, non-coding RNA.
RefSeq Summary (NR_073090): This gene encodes a nuclear protein involved in transcriptional activation. The encoded protein may form a component of several different histone acetyltransferase complexes. There is a pseudogene for this gene on chromosome 2. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2012].
Transcript (Including UTRs)
   Position: hg19 chr1:37,955,561-37,980,420 Size: 24,860 Total Exon Count: 9 Strand: -


Page IndexSequence and LinksMalaCardsCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:37,955,561-37,980,420)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblEntrez GeneExonPrimerH-INV
HGNCLynxOMIMPubMedStanford SOURCEWikipedia

-  MalaCards Disease Associations
  MalaCards Gene Search: MEAF6
Diseases sorted by gene-association score: endometrial stromal sarcoma (4)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 36.71 RPKM in Pituitary
Total median expression: 782.16 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AF172817 - Homo sapiens MSTP088 (MST088) mRNA, complete cds.
JD365206 - Sequence 346230 from Patent EP1572962.
JD125648 - Sequence 106672 from Patent EP1572962.
JD192063 - Sequence 173087 from Patent EP1572962.
JD395440 - Sequence 376464 from Patent EP1572962.
JD481335 - Sequence 462359 from Patent EP1572962.
BX640719 - Homo sapiens mRNA; cDNA DKFZp686D18202 (from clone DKFZp686D18202).
LF383907 - JP 2014500723-A/191410: Polycomb-Associated Non-Coding RNAs.
BX538212 - Homo sapiens mRNA; cDNA DKFZp686L05272 (from clone DKFZp686L05272); complete cds.
AK225598 - Homo sapiens mRNA for hypothetical protein LOC64769 variant, clone: PNC04154.
BC016328 - Homo sapiens chromosome 1 open reading frame 149, mRNA (cDNA clone MGC:23733 IMAGE:4102633), complete cds.
AY007166 - Homo sapiens clone CDABP0189 mRNA sequence.
BC043239 - Homo sapiens chromosome 1 open reading frame 149, mRNA (cDNA clone IMAGE:5295869), with apparent retained intron.
BC056406 - Homo sapiens chromosome 1 open reading frame 149, mRNA (cDNA clone MGC:64866 IMAGE:6471256), complete cds.
AK021792 - Homo sapiens cDNA FLJ11730 fis, clone HEMBA1005403.
AK309663 - Homo sapiens cDNA, FLJ99704.
AK308118 - Homo sapiens cDNA, FLJ98066.
AY211926 - Homo sapiens sarcoma antigen NY-SAR-91 mRNA, partial cds.
JD228444 - Sequence 209468 from Patent EP1572962.
JD196791 - Sequence 177815 from Patent EP1572962.
JD042971 - Sequence 23995 from Patent EP1572962.
JD332625 - Sequence 313649 from Patent EP1572962.
JD019400 - Sequence 424 from Patent EP1572962.
JD030875 - Sequence 11899 from Patent EP1572962.
JD327621 - Sequence 308645 from Patent EP1572962.
JD257793 - Sequence 238817 from Patent EP1572962.
JD443305 - Sequence 424329 from Patent EP1572962.
JD224977 - Sequence 206001 from Patent EP1572962.
JD243541 - Sequence 224565 from Patent EP1572962.
AK225434 - Homo sapiens mRNA for hypothetical protein LOC64769 variant, clone: HSI01267.
AB463504 - Synthetic construct DNA, clone: pF1KB6886, Homo sapiens C1orf149 gene for chromosome 1 open reading frame 149, without stop codon, in Flexi system.
HQ448659 - Synthetic construct Homo sapiens clone IMAGE:100072100; CCSB007537_01 chromosome 1 open reading frame 149 (C1orf149) gene, encodes complete protein.
KJ903092 - Synthetic construct Homo sapiens clone ccsbBroadEn_12486 MEAF6 gene, encodes complete protein.
EU831681 - Synthetic construct Homo sapiens clone HAIB:100066710; DKFZo003B0320 chromosome 1 open reading frame 149 protein (C1orf149) gene, encodes complete protein.
EU832519 - Synthetic construct Homo sapiens clone HAIB:100067548; DKFZo008H0329 chromosome 1 open reading frame 149 protein (C1orf149) gene, encodes complete protein.
EU832600 - Synthetic construct Homo sapiens clone HAIB:100067629; DKFZo004H0330 chromosome 1 open reading frame 149 protein (C1orf149) gene, encodes complete protein.
DQ099384 - Homo sapiens sarcoma antigen NY-SAR-91 mRNA, complete cds, alternatively spliced.
CU677607 - Synthetic construct Homo sapiens gateway clone IMAGE:100017558 5' read C1orf149 mRNA.
JD458356 - Sequence 439380 from Patent EP1572962.
JD406035 - Sequence 387059 from Patent EP1572962.
MA619484 - JP 2018138019-A/191410: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_073090, uc001cbh.1
UCSC ID: uc001cbh.2
RefSeq Accession: NR_073090

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: NR_073090.1
exon count: 9CDS single in 3' UTR: no RNA size: 4876
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 952.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.