Human Gene SLC2A1-AS1 (uc001cil.3) Description and Page Index
  Description: Homo sapiens SLC2A1 antisense RNA 1 (SLC2A1-AS1), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr1:43,424,720-43,449,029 Size: 24,310 Total Exon Count: 4 Strand: +

Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr1:43,424,720-43,449,029)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerH-INVHGNCLynx
PubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.31 RPKM in Pituitary
Total median expression: 36.49 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  LF383903 - JP 2014500723-A/191406: Polycomb-Associated Non-Coding RNAs.
JD341892 - Sequence 322916 from Patent EP1572962.
JD358187 - Sequence 339211 from Patent EP1572962.
AK056786 - Homo sapiens cDNA FLJ32224 fis, clone PLACE6004336.
JD224460 - Sequence 205484 from Patent EP1572962.
JD447537 - Sequence 428561 from Patent EP1572962.
JD508542 - Sequence 489566 from Patent EP1572962.
JD452489 - Sequence 433513 from Patent EP1572962.
JD224357 - Sequence 205381 from Patent EP1572962.
JD116256 - Sequence 97280 from Patent EP1572962.
JD373351 - Sequence 354375 from Patent EP1572962.
JD532077 - Sequence 513101 from Patent EP1572962.
JD190544 - Sequence 171568 from Patent EP1572962.
JD493893 - Sequence 474917 from Patent EP1572962.
JD072633 - Sequence 53657 from Patent EP1572962.
JD412198 - Sequence 393222 from Patent EP1572962.
JD175379 - Sequence 156403 from Patent EP1572962.
JD448961 - Sequence 429985 from Patent EP1572962.
JD448962 - Sequence 429986 from Patent EP1572962.
JD075612 - Sequence 56636 from Patent EP1572962.
JD490964 - Sequence 471988 from Patent EP1572962.
JD057514 - Sequence 38538 from Patent EP1572962.
MA619480 - JP 2018138019-A/191406: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_033967
UCSC ID: uc001cil.3
RefSeq Accession: NR_033967

-  Gene Model Information
category: antisense nonsense-mediated-decay: no RNA accession: NR_033967.1
exon count: 4CDS single in 3' UTR: no RNA size: 1138
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 22.00frame shift in genome: no % Coverage: 98.77
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.