Human Gene WBP1L (uc001kwe.4) Description and Page Index
  Description: Homo sapiens WW domain binding protein 1-like (WBP1L), transcript variant 2, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr10:104,535,888-104,576,021 Size: 40,134 Total Exon Count: 4 Strand: +
Coding Region
   Position: hg19 chr10:104,536,148-104,573,088 Size: 36,941 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:104,535,888-104,576,021)mRNA (may differ from genome)Protein (342 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCHPRDLynxMGI
neXtProtOMIMPubMedStanford SOURCETreefamUniProtKB
Wikipedia

-  Comments and Description Text from UniProtKB
  ID: WBP1L_HUMAN
DESCRIPTION: RecName: Full=WW domain binding protein 1-like; AltName: Full=Outcome predictor in acute leukemia 1;
SUBCELLULAR LOCATION: Membrane; Single-pass membrane protein (Potential).
SEQUENCE CAUTION: Sequence=BAA91122.1; Type=Erroneous initiation; Note=Translation N-terminally extended;

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 37.11 RPKM in Thyroid
Total median expression: 891.25 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -100.00260-0.385 Picture PostScript Text
3' UTR -1067.542933-0.364 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR021684 - Uncharacterised_WW-bd

Pfam Domains:
PF11669 - WW domain-binding protein 1

ModBase Predicted Comparative 3D Structure on Q9NX94
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Cellular Component:
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AK300871 - Homo sapiens cDNA FLJ58693 complete cds.
AK316452 - Homo sapiens cDNA, FLJ79351 complete cds.
AK308843 - Homo sapiens cDNA, FLJ98884.
AY656171 - Homo sapiens outcome predictor in acute leukemia 1 (OPAL1) mRNA, complete cds.
AK056285 - Homo sapiens cDNA FLJ31723 fis, clone NT2RI2006682, weakly similar to Human WW domain binding protein-1 mRNA.
BC113857 - Homo sapiens chromosome 10 open reading frame 26, mRNA (cDNA clone MGC:125648 IMAGE:40027916), complete cds.
BC114465 - Homo sapiens chromosome 10 open reading frame 26, mRNA (cDNA clone MGC:125647 IMAGE:40027914), complete cds.
JD431502 - Sequence 412526 from Patent EP1572962.
JD254881 - Sequence 235905 from Patent EP1572962.
AK000374 - Homo sapiens cDNA FLJ20367 fis, clone HEP18101.
JD317283 - Sequence 298307 from Patent EP1572962.
JD077181 - Sequence 58205 from Patent EP1572962.
JD296140 - Sequence 277164 from Patent EP1572962.
JD370329 - Sequence 351353 from Patent EP1572962.
JD115355 - Sequence 96379 from Patent EP1572962.
JD363978 - Sequence 345002 from Patent EP1572962.
DQ585838 - Homo sapiens piRNA piR-52950, complete sequence.
JD165753 - Sequence 146777 from Patent EP1572962.
JD297991 - Sequence 279015 from Patent EP1572962.
JD132747 - Sequence 113771 from Patent EP1572962.
JD282673 - Sequence 263697 from Patent EP1572962.
JD562542 - Sequence 543566 from Patent EP1572962.
JD335721 - Sequence 316745 from Patent EP1572962.
JD468993 - Sequence 450017 from Patent EP1572962.
JD546194 - Sequence 527218 from Patent EP1572962.
JD043452 - Sequence 24476 from Patent EP1572962.
JD179017 - Sequence 160041 from Patent EP1572962.
JD136845 - Sequence 117869 from Patent EP1572962.
JD160660 - Sequence 141684 from Patent EP1572962.
JD484804 - Sequence 465828 from Patent EP1572962.
JD193472 - Sequence 174496 from Patent EP1572962.
JD554802 - Sequence 535826 from Patent EP1572962.
JD046093 - Sequence 27117 from Patent EP1572962.
JD536396 - Sequence 517420 from Patent EP1572962.
DQ580641 - Homo sapiens piRNA piR-48753, complete sequence.
JD187585 - Sequence 168609 from Patent EP1572962.
JD465321 - Sequence 446345 from Patent EP1572962.
JD522689 - Sequence 503713 from Patent EP1572962.
JD067469 - Sequence 48493 from Patent EP1572962.
AK000161 - Homo sapiens cDNA FLJ20154 fis, clone COL08740.
JD507332 - Sequence 488356 from Patent EP1572962.
JD469061 - Sequence 450085 from Patent EP1572962.
JD428465 - Sequence 409489 from Patent EP1572962.
JD253212 - Sequence 234236 from Patent EP1572962.
BC010506 - Homo sapiens chromosome 10 open reading frame 26, mRNA (cDNA clone IMAGE:4148754).
AF070644 - Homo sapiens clone 24742 mRNA sequence.
BC063659 - Homo sapiens cDNA clone IMAGE:5001157, partial cds.
BC073886 - Homo sapiens cDNA clone IMAGE:4997178, partial cds.

-  Other Names for This Gene
  Alternate Gene Symbols: B3KPF4, B7Z6S7, C10orf26, D3DR90, NM_017787, NP_060257, OPA1L, Q1EG70, Q2HIY7, Q5F2G6, Q9NX94, WBP1L_HUMAN
UCSC ID: uc001kwe.4
RefSeq Accession: NM_017787
Protein: Q9NX94 (aka WBP1L_HUMAN)
CCDS: CCDS7540.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_017787.4
exon count: 4CDS single in 3' UTR: no RNA size: 4236
ORF size: 1029CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2110.00frame shift in genome: no % Coverage: 99.67
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.