Human Gene BRSK2 (uc001ltn.4) Description and Page Index
  Description: Homo sapiens BR serine/threonine kinase 2 (BRSK2), transcript variant 4, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr11:1,459,536-1,483,919 Size: 24,384 Total Exon Count: 19 Strand: +


Page IndexSequence and LinksGenetic AssociationsMalaCardsCTDRNA-Seq Expression
Microarray ExpressionOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:1,459,536-1,483,919)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblEntrez GeneExonPrimerH-INV
HGNCLynxOMIMPubMedStanford SOURCEWikipedia

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): BRSK2
CDC HuGE Published Literature: BRSK2
Positive Disease Associations: Potassium
Related Studies:
  1. Potassium
    , , . [PubMed 0]

-  MalaCards Disease Associations
  MalaCards Gene Search: BRSK2
Diseases sorted by gene-association score: limbic encephalitis (5), pleural tuberculosis (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 55.08 RPKM in Brain - Cerebellum
Total median expression: 339.84 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AY166857 - Homo sapiens serine/threonine protein kinase isoform mRNA, complete cds.
AF533878 - Homo sapiens putative serine/threonine protein kinase variant B2 mRNA, complete cds.
AF533876 - Homo sapiens putative serine/threonine protein kinase variant A mRNA, complete cds.
AF533877 - Homo sapiens putative serine/threonine protein kinase variant B1 mRNA, complete cds.
AF533879 - Homo sapiens putative serine/threonine protein kinase variant C mRNA, complete cds.
AF533880 - Homo sapiens putative serine/threonine protein kinase variant B3 mRNA, complete cds.
HM005343 - Homo sapiens clone HTL-T-30 testicular tissue protein Li 30 mRNA, complete cds.
AY505125 - Homo sapiens protein kinase SAD-A mRNA, complete cds.
BC152769 - Synthetic construct Homo sapiens clone IMAGE:100015944, MGC:184168 BR serine/threonine kinase 2 (BRSK2) mRNA, encodes complete protein.
AK122851 - Homo sapiens cDNA FLJ16471 fis, clone BRHIP3013271, highly similar to BR serine/threonine-protein kinase 2 (EC 2.7.11.1).
AK131534 - Homo sapiens cDNA FLJ16763 fis, clone BRAMY3018357, weakly similar to SNF1-related protein kinase KIN10 (EC 2.7.1.-).
AJ006701 - Homo sapiens mRNA for putative serine/threonine protein kinase, partial.
AK297211 - Homo sapiens cDNA FLJ58378 complete cds, highly similar to BR serine/threonine-protein kinase 2 (EC 2.7.11.1).
JD419560 - Sequence 400584 from Patent EP1572962.
AK074411 - Homo sapiens cDNA FLJ23831 fis, clone KAIA00425, highly similar to Homo sapiens mRNA for putative serine/threonine protein kinase.
AK297306 - Homo sapiens cDNA FLJ51499 complete cds, highly similar to BR serine/threonine-protein kinase 2 (EC 2.7.11.1).
DQ600947 - Homo sapiens piRNA piR-39013, complete sequence.
BC017182 - Homo sapiens BR serine/threonine kinase 2, mRNA (cDNA clone IMAGE:3343795).
BC024291 - Homo sapiens BR serine/threonine kinase 2, mRNA (cDNA clone IMAGE:3354414), complete cds.
AF020089 - Homo sapiens PEN11B mRNA, complete cds.
AK123356 - Homo sapiens cDNA FLJ41362 fis, clone BRCAN2003703, highly similar to Homo sapiens mRNA for putative serine/threonine protein kinase.
JD211196 - Sequence 192220 from Patent EP1572962.
JD462548 - Sequence 443572 from Patent EP1572962.
JD510349 - Sequence 491373 from Patent EP1572962.
JD461510 - Sequence 442534 from Patent EP1572962.
JD371549 - Sequence 352573 from Patent EP1572962.
JD455461 - Sequence 436485 from Patent EP1572962.
JD133866 - Sequence 114890 from Patent EP1572962.
JD054834 - Sequence 35858 from Patent EP1572962.
JD126756 - Sequence 107780 from Patent EP1572962.
JD334319 - Sequence 315343 from Patent EP1572962.
JD189173 - Sequence 170197 from Patent EP1572962.
JD107148 - Sequence 88172 from Patent EP1572962.
JD527121 - Sequence 508145 from Patent EP1572962.
JD462003 - Sequence 443027 from Patent EP1572962.
JD553684 - Sequence 534708 from Patent EP1572962.
JD217561 - Sequence 198585 from Patent EP1572962.
JD480155 - Sequence 461179 from Patent EP1572962.
JD271754 - Sequence 252778 from Patent EP1572962.
JD396663 - Sequence 377687 from Patent EP1572962.
JD143569 - Sequence 124593 from Patent EP1572962.
JD097283 - Sequence 78307 from Patent EP1572962.
JD372762 - Sequence 353786 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AJ006701, NM_001256629, uc001ltn.3
UCSC ID: uc001ltn.4
RefSeq Accession: NM_001256629

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: AJ006701.1
exon count: 19CDS single in 3' UTR: no RNA size: 1956
ORF size: 0CDS single in intron: no Alignment % ID: 99.90
txCdsPredict score: 2705.50frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.