Human Gene AK095700 (uc001ubf.2) Description and Page Index
  Description: Homo sapiens cDNA FLJ37163 fis, clone BRACE2026971.
Transcript (Including UTRs)
   Position: hg19 chr12:122,233,175-122,235,736 Size: 2,562 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr12:122,235,126-122,235,566 Size: 441 Coding Exon Count: 1 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:122,233,175-122,235,736)mRNA (may differ from genome)Protein (146 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaCGAPEnsembl
ExonPrimerGeneCardsH-INVMGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 36.20 RPKM in Brain - Cerebellum
Total median expression: 641.84 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -42.30170-0.249 Picture PostScript Text
3' UTR -847.361951-0.434 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC038786 - Homo sapiens hypothetical locus LOC338799, mRNA (cDNA clone IMAGE:5271722).
AK094482 - Homo sapiens cDNA FLJ37163 fis, clone BRACE2026971.
AK095700 - Homo sapiens cDNA FLJ38381 fis, clone FEBRA2003436.
JD172928 - Sequence 153952 from Patent EP1572962.
JD126317 - Sequence 107341 from Patent EP1572962.
JD220970 - Sequence 201994 from Patent EP1572962.
JD166863 - Sequence 147887 from Patent EP1572962.
JD399800 - Sequence 380824 from Patent EP1572962.
JD317491 - Sequence 298515 from Patent EP1572962.
JD275178 - Sequence 256202 from Patent EP1572962.
JD507638 - Sequence 488662 from Patent EP1572962.
JD372207 - Sequence 353231 from Patent EP1572962.
JD192416 - Sequence 173440 from Patent EP1572962.
JD368074 - Sequence 349098 from Patent EP1572962.
JD437893 - Sequence 418917 from Patent EP1572962.
JD341800 - Sequence 322824 from Patent EP1572962.
JD371512 - Sequence 352536 from Patent EP1572962.
JD412449 - Sequence 393473 from Patent EP1572962.
JD300650 - Sequence 281674 from Patent EP1572962.
JD377509 - Sequence 358533 from Patent EP1572962.
JD106930 - Sequence 87954 from Patent EP1572962.
JD492681 - Sequence 473705 from Patent EP1572962.
JD362630 - Sequence 343654 from Patent EP1572962.

-  Other Names for This Gene
  UCSC ID: uc001ubf.2
Representative RNA: AK095700

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK095700.1
exon count: 1CDS single in 3' UTR: no RNA size: 2553
ORF size: 441CDS single in intron: no Alignment % ID: 99.80
txCdsPredict score: 828.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.