Human Gene ELMSAN1 (uc001xos.3) Description and Page Index
  Description: Homo sapiens ELM2 and Myb/SANT-like domain containing 1 (ELMSAN1), transcript variant 2, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr14:74,181,825-74,195,879 Size: 14,055 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr14:74,186,004-74,193,632 Size: 7,629 Coding Exon Count: 7 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:74,181,825-74,195,879)mRNA (may differ from genome)Protein (310 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblExonPrimerGeneCardsGeneNetwork
H-INVHGNCLynxMGIPubMedStanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.65 RPKM in Skin - Sun Exposed (Lower leg)
Total median expression: 401.68 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -892.452247-0.397 Picture PostScript Text
3' UTR -1575.754179-0.377 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
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-  Descriptions from all associated GenBank mRNAs
  BC052976 - Homo sapiens chromosome 14 open reading frame 43, mRNA (cDNA clone IMAGE:6193955), with apparent retained intron.
AB385229 - Synthetic construct DNA, clone: pF1KB9471, Homo sapiens C14orf43 gene for C14orf43 protein, complete cds, without stop codon, in Flexi system.
BC006511 - Homo sapiens chromosome 14 open reading frame 43, mRNA (cDNA clone IMAGE:3010441), partial cds.
BC025330 - Homo sapiens chromosome 14 open reading frame 43, mRNA (cDNA clone IMAGE:4111658), partial cds.
BC006451 - Homo sapiens, clone IMAGE:3960432, mRNA.
BC003121 - Homo sapiens, clone IMAGE:3357079, mRNA.
BC015668 - Homo sapiens chromosome 14 open reading frame 43, mRNA (cDNA clone IMAGE:4328688), partial cds.
BC009202 - Homo sapiens chromosome 14 open reading frame 43, mRNA (cDNA clone IMAGE:3614143), partial cds.
AK127785 - Homo sapiens cDNA FLJ45886 fis, clone OCBBF3021361.
BC105996 - Homo sapiens cDNA clone IMAGE:4776214.
AK024978 - Homo sapiens cDNA: FLJ21325 fis, clone COL02408, highly similar to AF147723 Homo sapiens lipopolysaccharide specific response-68 protein (LSR68) mRNA.
BC036475 - Homo sapiens cDNA clone IMAGE:5259265.
BC047633 - Homo sapiens chromosome 14 open reading frame 43, mRNA (cDNA clone IMAGE:4818554).
BC034345 - Homo sapiens cDNA clone IMAGE:4750481.
BC062730 - Homo sapiens cDNA clone IMAGE:6672804, partial cds.
AK095434 - Homo sapiens cDNA FLJ38115 fis, clone D3OST2002452.
LF209593 - JP 2014500723-A/17096: Polycomb-Associated Non-Coding RNAs.
LF329958 - JP 2014500723-A/137461: Polycomb-Associated Non-Coding RNAs.
JD311795 - Sequence 292819 from Patent EP1572962.
JD476726 - Sequence 457750 from Patent EP1572962.
JD069739 - Sequence 50763 from Patent EP1572962.
JD379671 - Sequence 360695 from Patent EP1572962.
JD560691 - Sequence 541715 from Patent EP1572962.
JD119789 - Sequence 100813 from Patent EP1572962.
JD371277 - Sequence 352301 from Patent EP1572962.
JD414484 - Sequence 395508 from Patent EP1572962.
JD514440 - Sequence 495464 from Patent EP1572962.
JD542915 - Sequence 523939 from Patent EP1572962.
JD560952 - Sequence 541976 from Patent EP1572962.
JD165228 - Sequence 146252 from Patent EP1572962.
LF329959 - JP 2014500723-A/137462: Polycomb-Associated Non-Coding RNAs.
DL492052 - Novel nucleic acids.
DL490601 - Novel nucleic acids.
AK308604 - Homo sapiens cDNA, FLJ98645.
JD479949 - Sequence 460973 from Patent EP1572962.
MA565535 - JP 2018138019-A/137461: Polycomb-Associated Non-Coding RNAs.
MA565536 - JP 2018138019-A/137462: Polycomb-Associated Non-Coding RNAs.
MA445170 - JP 2018138019-A/17096: Polycomb-Associated Non-Coding RNAs.
AK021512 - Homo sapiens cDNA FLJ11450 fis, clone HEMBA1001432.
AK090424 - Homo sapiens mRNA for FLJ00335 protein.
JD519887 - Sequence 500911 from Patent EP1572962.
JD064165 - Sequence 45189 from Patent EP1572962.
JD393152 - Sequence 374176 from Patent EP1572962.
JD369144 - Sequence 350168 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: BC052976
UCSC ID: uc001xos.3
RefSeq Accession: NM_001043318

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC052976.1
exon count: 7CDS single in 3' UTR: no RNA size: 5338
ORF size: 933CDS single in intron: no Alignment % ID: 99.91
txCdsPredict score: 758.00frame shift in genome: no % Coverage: 99.51
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: yes # AT/AC introns 0
selenocysteine: no end bleed into intron: 6387# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.