Human Gene TRIM69 (uc001zue.3) Description and Page Index
  Description: Homo sapiens cDNA, FLJ18592.
Transcript (Including UTRs)
   Position: hg19 chr15:45,021,219-45,025,046 Size: 3,828 Total Exon Count: 2 Strand: +


Page IndexSequence and LinksGenetic AssociationsCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:45,021,219-45,025,046)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaCGAP
EnsemblExonPrimerHGNCLynxPubMedStanford SOURCE

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): TRIM69
CDC HuGE Published Literature: TRIM69
Positive Disease Associations: monocyte chemoattractant protein 1 (66-77)
Related Studies:
  1. monocyte chemoattractant protein 1 (66-77)
    , , . [PubMed 0]

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 13.76 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 192.84 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK311550 - Homo sapiens cDNA, FLJ18592.
DQ232883 - Homo sapiens tripartite motif protein 69 (TRIM69) mRNA, complete cds.
BC031266 - Homo sapiens ring finger protein 36, mRNA (cDNA clone IMAGE:5277162).

-  Other Names for This Gene
  Alternate Gene Symbols: BC031266
UCSC ID: uc001zue.3
Representative RNA: BC031266

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: BC031266.1
exon count: 2CDS single in 3' UTR: no RNA size: 1984
ORF size: 0CDS single in intron: no Alignment % ID: 99.63
txCdsPredict score: 504.00frame shift in genome: no % Coverage: 96.62
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.