Human Gene AK128439 (uc002ezo.1) Description and Page Index
  Description: Homo sapiens cDNA FLJ33308 fis, clone BNGH42004291.
Transcript (Including UTRs)
   Position: hg19 chr16:70,721,344-70,724,952 Size: 3,609 Total Exon Count: 1 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:70,721,344-70,724,952)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
PubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 9.58 RPKM in Spleen
Total median expression: 307.54 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC000536 - Homo sapiens Vac14 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:3162364), partial cds.
AK025479 - Homo sapiens cDNA: FLJ21826 fis, clone HEP01350.
BC007214 - Homo sapiens Vac14 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:2819370), partial cds.
BC110852 - Homo sapiens Vac14 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:6501756).
AK001167 - Homo sapiens cDNA FLJ10305 fis, clone NT2RM2000239.
AK307766 - Homo sapiens cDNA, FLJ97714.
AK056433 - Homo sapiens cDNA FLJ31871 fis, clone NT2RP7002243, highly similar to Homo sapiens Vac14 homolog (VAC14), mRNA.
BC125108 - Homo sapiens Vac14 homolog (S. cerevisiae), mRNA (cDNA clone MGC:149815 IMAGE:40118772), complete cds.
BC125109 - Homo sapiens Vac14 homolog (S. cerevisiae), mRNA (cDNA clone MGC:149816 IMAGE:40118777), complete cds.
AK297564 - Homo sapiens cDNA FLJ53136 complete cds, highly similar to Homo sapiens Vac14 homolog (VAC14), mRNA.
KJ902860 - Synthetic construct Homo sapiens clone ccsbBroadEn_12254 VAC14 gene, encodes complete protein.
KJ894238 - Synthetic construct Homo sapiens clone ccsbBroadEn_03632 VAC14 gene, encodes complete protein.
CR457343 - Homo sapiens full open reading frame cDNA clone RZPDo834A0521D for gene FLJ10305, hypothetical protein FLJ10305; complete cds, incl. stopcodon.
BC110072 - Homo sapiens Vac14 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:40015379).
AL137396 - Homo sapiens mRNA; cDNA DKFZp434J032 (from clone DKFZp434J032).
AK090627 - Homo sapiens cDNA FLJ33308 fis, clone BNGH42004291.
AX746543 - Sequence 68 from Patent EP1308459.
AK128439 - Homo sapiens cDNA FLJ46582 fis, clone THYMU3043327.
AK093941 - Homo sapiens cDNA FLJ36622 fis, clone TRACH2016690, highly similar to Homo sapiens Vac14 homolog (VAC14), mRNA.
JD248194 - Sequence 229218 from Patent EP1572962.
JD414108 - Sequence 395132 from Patent EP1572962.
JD328999 - Sequence 310023 from Patent EP1572962.
JD260865 - Sequence 241889 from Patent EP1572962.
JD156726 - Sequence 137750 from Patent EP1572962.
JD138735 - Sequence 119759 from Patent EP1572962.

-  Other Names for This Gene
  UCSC ID: uc002ezo.1
Representative RNA: AK128439

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: no RNA accession: AK128439.1
exon count: 1CDS single in 3' UTR: no RNA size: 3607
ORF size: 0CDS single in intron: yes Alignment % ID: 99.86
txCdsPredict score: 644.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.