Human Gene BC033456 (uc002iqk.3) Description and Page Index
  Description: Homo sapiens histone linker H1 domain, spermatid-specific 1, mRNA (cDNA clone IMAGE:3925349).
Transcript (Including UTRs)
   Position: hg19 chr17:48,248,789-48,258,539 Size: 9,751 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr17:48,249,462-48,258,440 Size: 8,979 Coding Exon Count: 2 

Page IndexSequence and LinksGene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA Structure
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:48,248,789-48,258,539)mRNA (may differ from genome)Protein (148 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneTable SchemaCGAP
EnsemblExonPrimerGeneCardsMGIPubMedStanford SOURCE

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.56 RPKM in Testis
Total median expression: 39.19 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -36.2099-0.366 Picture PostScript Text
3' UTR -281.60673-0.418 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC033456 - Homo sapiens histone linker H1 domain, spermatid-specific 1, mRNA (cDNA clone IMAGE:3925349).
BC109047 - Homo sapiens histone linker H1 domain, spermatid-specific 1, mRNA (cDNA clone IMAGE:40030292).
BC109048 - Homo sapiens histone linker H1 domain, spermatid-specific 1, mRNA (cDNA clone IMAGE:40030293).
AY286318 - Homo sapiens spermatid-specific linker histone H1-like protein (HILS1) mRNA, complete cds.
JD096070 - Sequence 77094 from Patent EP1572962.
JD500504 - Sequence 481528 from Patent EP1572962.
JD446747 - Sequence 427771 from Patent EP1572962.
JD362259 - Sequence 343283 from Patent EP1572962.
JD148793 - Sequence 129817 from Patent EP1572962.
JD185172 - Sequence 166196 from Patent EP1572962.
JD456184 - Sequence 437208 from Patent EP1572962.
JD313541 - Sequence 294565 from Patent EP1572962.
JD368195 - Sequence 349219 from Patent EP1572962.
JD185794 - Sequence 166818 from Patent EP1572962.
JD215626 - Sequence 196650 from Patent EP1572962.
JD108411 - Sequence 89435 from Patent EP1572962.
JD220699 - Sequence 201723 from Patent EP1572962.
BC048250 - Homo sapiens histone linker H1 domain, spermatid-specific 1, mRNA (cDNA clone IMAGE:4704878).

-  Other Names for This Gene
  UCSC ID: uc002iqk.3
Representative RNA: BC033456

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC033456.1
exon count: 2CDS single in 3' UTR: no RNA size: 1250
ORF size: 447CDS single in intron: no Alignment % ID: 99.75
txCdsPredict score: 815.00frame shift in genome: no % Coverage: 97.28
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.