Human Gene C22orf26 (uc003bgq.1) Description and Page Index
  Description: Homo sapiens chromosome 22 open reading frame 26 (C22orf26), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr22:46,446,339-46,450,024 Size: 3,686 Total Exon Count: 2 Strand: -
Coding Region
   Position: hg19 chr22:46,447,707-46,449,973 Size: 2,267 Coding Exon Count: 2 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:46,446,339-46,450,024)mRNA (may differ from genome)Protein (138 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerGeneCardsGeneNetworkH-INVHGNC
HPRDLynxMGIneXtProtPubMedStanford SOURCE
TreefamUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.62 RPKM in Spleen
Total median expression: 14.42 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -23.8051-0.467 Picture PostScript Text
3' UTR -520.361368-0.380 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q9NV39
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK096201 - Homo sapiens cDNA FLJ38882 fis, clone MESAN2016159.
AK001807 - Homo sapiens cDNA FLJ10945 fis, clone OVARC1001425.
JD348380 - Sequence 329404 from Patent EP1572962.
JD073574 - Sequence 54598 from Patent EP1572962.
JD518380 - Sequence 499404 from Patent EP1572962.
JD300006 - Sequence 281030 from Patent EP1572962.
JD281721 - Sequence 262745 from Patent EP1572962.
JD233388 - Sequence 214412 from Patent EP1572962.
JD449486 - Sequence 430510 from Patent EP1572962.
JD423877 - Sequence 404901 from Patent EP1572962.
JD371890 - Sequence 352914 from Patent EP1572962.
JD244784 - Sequence 225808 from Patent EP1572962.
JD277687 - Sequence 258711 from Patent EP1572962.
JD279156 - Sequence 260180 from Patent EP1572962.
JD417485 - Sequence 398509 from Patent EP1572962.
JD449020 - Sequence 430044 from Patent EP1572962.
JD278640 - Sequence 259664 from Patent EP1572962.
JD376441 - Sequence 357465 from Patent EP1572962.
JD450997 - Sequence 432021 from Patent EP1572962.
JD088937 - Sequence 69961 from Patent EP1572962.
JD389413 - Sequence 370437 from Patent EP1572962.
JD079715 - Sequence 60739 from Patent EP1572962.
JD375213 - Sequence 356237 from Patent EP1572962.
JD210327 - Sequence 191351 from Patent EP1572962.
JD461976 - Sequence 443000 from Patent EP1572962.
BC152896 - Synthetic construct Homo sapiens clone IMAGE:100016212, MGC:184133 chromosome 22 open reading frame 26 (C22orf26) mRNA, encodes complete protein.
BC156803 - Synthetic construct Homo sapiens clone IMAGE:100062534, MGC:190548 chromosome 22 open reading frame 26 (C22orf26) mRNA, encodes complete protein.
AB528792 - Synthetic construct DNA, clone: pF1KE0258, Homo sapiens C22orf26 gene for chromosome 22 open reading frame 26, without stop codon, in Flexi system.
JD249475 - Sequence 230499 from Patent EP1572962.
JD140205 - Sequence 121229 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B0QZ24, CV026_HUMAN, NM_018280, NP_060750, Q9NV39
UCSC ID: uc003bgq.1
RefSeq Accession: NM_018280
Protein: Q9NV39 (aka CV026_HUMAN)
CCDS: CCDS14071.1

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_018280.2
exon count: 2CDS single in 3' UTR: no RNA size: 1836
ORF size: 417CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 1023.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.