Human Gene MIRLET7BHG (uc003bgu.2) Description and Page Index
  Description: Homo sapiens MIRLET7B host gene (non-protein coding) (MIRLET7BHG), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr22:46,481,877-46,507,518 Size: 25,642 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr22:46,493,807-46,505,890 Size: 12,084 Coding Exon Count: 4 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:46,481,877-46,507,518)mRNA (may differ from genome)Protein (160 aa)
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblExonPrimerGeneCardsH-INVHGNCLynx
MGIPubMedStanford SOURCETreefamUniProtKB

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.37 RPKM in Cells - Cultured fibroblasts
Total median expression: 39.07 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -63.90165-0.387 Picture PostScript Text
3' UTR -794.121628-0.488 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on Q6ZNQ0
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC036832 - Homo sapiens, clone IMAGE:3890870, mRNA.
AK023424 - Homo sapiens cDNA FLJ13362 fis, clone PLACE1000236.
AK130875 - Homo sapiens cDNA FLJ27365 fis, clone UBA02633.
JD065601 - Sequence 46625 from Patent EP1572962.
JD339315 - Sequence 320339 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK130875, Q6ZNQ0, Q6ZNQ0_HUMAN, RP4-695O20__B.10, RP4-695O20__B.10-001
UCSC ID: uc003bgu.2
RefSeq Accession: NR_027033
Protein: Q6ZNQ0

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK130875.1
exon count: 5CDS single in 3' UTR: no RNA size: 2270
ORF size: 483CDS single in intron: no Alignment % ID: 99.91
txCdsPredict score: 632.50frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.