Human Gene LOC648987 (uc003jnd.3) Description and Page Index
  Description: Homo sapiens uncharacterized LOC648987 (LOC648987), transcript variant 2, non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr5:43,014,831-43,018,913 Size: 4,083 Total Exon Count: 2 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:43,014,831-43,018,913)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerLynxPubMedStanford SOURCE

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.99 RPKM in Testis
Total median expression: 45.02 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC046188 - Homo sapiens, clone IMAGE:5561763, mRNA.
BC013653 - Homo sapiens, clone IMAGE:3462051, mRNA.
BC039088 - Homo sapiens, clone IMAGE:5164031, mRNA.
BC034002 - Homo sapiens hypothetical LOC648987, mRNA (cDNA clone IMAGE:5092955), partial cds.
AK097396 - Homo sapiens cDNA FLJ40077 fis, clone TESTI2001120.
JD186948 - Sequence 167972 from Patent EP1572962.
JD235061 - Sequence 216085 from Patent EP1572962.
JD391786 - Sequence 372810 from Patent EP1572962.
JD308977 - Sequence 290001 from Patent EP1572962.
JD444647 - Sequence 425671 from Patent EP1572962.
JD385796 - Sequence 366820 from Patent EP1572962.
JD163278 - Sequence 144302 from Patent EP1572962.
JD521457 - Sequence 502481 from Patent EP1572962.
JD227264 - Sequence 208288 from Patent EP1572962.
JD358179 - Sequence 339203 from Patent EP1572962.
JD037094 - Sequence 18118 from Patent EP1572962.
JD229304 - Sequence 210328 from Patent EP1572962.
DQ584099 - Homo sapiens piRNA piR-51211, complete sequence.
JD473924 - Sequence 454948 from Patent EP1572962.
JD036963 - Sequence 17987 from Patent EP1572962.
DQ597478 - Homo sapiens piRNA piR-35544, complete sequence.
JD254738 - Sequence 235762 from Patent EP1572962.
JD318341 - Sequence 299365 from Patent EP1572962.
JD506115 - Sequence 487139 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_034086
UCSC ID: uc003jnd.3
RefSeq Accession: NR_034086

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_034086.1
exon count: 2CDS single in 3' UTR: no RNA size: 2160
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: -83.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.