Human Gene C5orf27 (uc003klq.3) Description and Page Index
  Description: Homo sapiens chromosome 5 open reading frame 27 (C5orf27), non-coding RNA.
Transcript (Including UTRs)
   Position: hg19 chr5:95,187,936-95,195,836 Size: 7,901 Total Exon Count: 3 Strand: +


Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:95,187,936-95,195,836)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaBioGPSCGAP
EnsemblEntrez GeneExonPrimerH-INVHGNCLynx
PubMedStanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 69.53 RPKM in Liver
Total median expression: 115.38 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK314737 - Homo sapiens cDNA, FLJ95599, Homo sapiens FIS (FIS), mRNA.
AK096140 - Homo sapiens cDNA FLJ38821 fis, clone LIVER2008580.
JD404568 - Sequence 385592 from Patent EP1572962.
JD530519 - Sequence 511543 from Patent EP1572962.
JD167928 - Sequence 148952 from Patent EP1572962.
JD361094 - Sequence 342118 from Patent EP1572962.
JD535660 - Sequence 516684 from Patent EP1572962.
JD576641 - Sequence 965 from Patent EP2831104.
JD318750 - Sequence 299774 from Patent EP1572962.
AY168789 - Homo sapiens FIS (FIS) mRNA, complete cds.
JD311151 - Sequence 292175 from Patent EP1572962.
JD343825 - Sequence 324849 from Patent EP1572962.
JD188628 - Sequence 169652 from Patent EP1572962.
BC093643 - Homo sapiens chromosome 5 open reading frame 27, mRNA (cDNA clone IMAGE:7939488).
BC101577 - Homo sapiens chromosome 5 open reading frame 27, mRNA (cDNA clone IMAGE:8069083).
KJ904000 - Synthetic construct Homo sapiens clone ccsbBroadEn_13394 C5orf27 gene, encodes complete protein.
JD184754 - Sequence 165778 from Patent EP1572962.
JD313819 - Sequence 294843 from Patent EP1572962.
JD231414 - Sequence 212438 from Patent EP1572962.
JD101382 - Sequence 82406 from Patent EP1572962.
JD563101 - Sequence 544125 from Patent EP1572962.
JD174269 - Sequence 155293 from Patent EP1572962.
JD257598 - Sequence 238622 from Patent EP1572962.
JD452092 - Sequence 433116 from Patent EP1572962.
JD096197 - Sequence 77221 from Patent EP1572962.
JD373906 - Sequence 354930 from Patent EP1572962.
JD277988 - Sequence 259012 from Patent EP1572962.
JD045953 - Sequence 26977 from Patent EP1572962.
JD221714 - Sequence 202738 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: NR_026936
UCSC ID: uc003klq.3
RefSeq Accession: NR_026936

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: NR_026936.1
exon count: 3CDS single in 3' UTR: no RNA size: 1931
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 480.00frame shift in genome: no % Coverage: 99.22
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.