Human Gene NUP43 (uc003qmx.4) Description and Page Index
  Description: Homo sapiens nucleoporin 43kDa (NUP43), transcript variant 1, mRNA.
RefSeq Summary (NM_198887): Bidirectional transport of macromolecules between the cytoplasm and nucleus occurs through nuclear pore complexes (NPCs) embedded in the nuclear envelope. NPCs are composed of subcomplexes, and NUP43 is part of one such subcomplex, Nup107-160 (Loiodice et al., 2004 [PubMed 15146057]).[supplied by OMIM, Mar 2008].
Transcript (Including UTRs)
   Position: hg19 chr6:150,045,452-150,057,758 Size: 12,307 Total Exon Count: 4 Strand: -


Page IndexSequence and LinksCTDRNA-Seq ExpressionMicroarray ExpressionOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:150,045,452-150,057,758)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblEntrez GeneExonPrimerGeneNetwork
H-INVHGNCLynxOMIMPubMedStanford SOURCE
TreefamWikipedia

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.06 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 271.20 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BX538215 - Homo sapiens mRNA; cDNA DKFZp686L22109 (from clone DKFZp686L22109).
AK074311 - Homo sapiens cDNA FLJ23731 fis, clone HEP14545.
AK023349 - Homo sapiens cDNA FLJ13287 fis, clone OVARC1001161.
AK095994 - Homo sapiens cDNA FLJ38675 fis, clone IMR322000243, highly similar to Nucleoporin Nup43.
BC046637 - Homo sapiens nucleoporin 43kDa, mRNA (cDNA clone IMAGE:5297868).
BC040121 - Homo sapiens nucleoporin 43kDa, mRNA (cDNA clone IMAGE:5552687), partial cds.
LF384615 - JP 2014500723-A/192118: Polycomb-Associated Non-Coding RNAs.
JD275237 - Sequence 256261 from Patent EP1572962.
JD126358 - Sequence 107382 from Patent EP1572962.
JD230149 - Sequence 211173 from Patent EP1572962.
JD144036 - Sequence 125060 from Patent EP1572962.
JD257696 - Sequence 238720 from Patent EP1572962.
JD352075 - Sequence 333099 from Patent EP1572962.
JD448493 - Sequence 429517 from Patent EP1572962.
JD332465 - Sequence 313489 from Patent EP1572962.
JD308957 - Sequence 289981 from Patent EP1572962.
JD446961 - Sequence 427985 from Patent EP1572962.
BC047539 - Homo sapiens nucleoporin 43kDa, mRNA (cDNA clone IMAGE:5270277).
BC065028 - Homo sapiens nucleoporin 43kDa, mRNA (cDNA clone MGC:70545 IMAGE:6042215), complete cds.
JD239399 - Sequence 220423 from Patent EP1572962.
JD232902 - Sequence 213926 from Patent EP1572962.
JD346787 - Sequence 327811 from Patent EP1572962.
JD312255 - Sequence 293279 from Patent EP1572962.
JD415028 - Sequence 396052 from Patent EP1572962.
JD132127 - Sequence 113151 from Patent EP1572962.
JD312254 - Sequence 293278 from Patent EP1572962.
JD312252 - Sequence 293276 from Patent EP1572962.
JD415027 - Sequence 396051 from Patent EP1572962.
JD476817 - Sequence 457841 from Patent EP1572962.
JD172899 - Sequence 153923 from Patent EP1572962.
JD379775 - Sequence 360799 from Patent EP1572962.
JD560738 - Sequence 541762 from Patent EP1572962.
JD522190 - Sequence 503214 from Patent EP1572962.
JD148685 - Sequence 129709 from Patent EP1572962.
JD379774 - Sequence 360798 from Patent EP1572962.
JD120607 - Sequence 101631 from Patent EP1572962.
JD415025 - Sequence 396049 from Patent EP1572962.
JD431834 - Sequence 412858 from Patent EP1572962.
JD080582 - Sequence 61606 from Patent EP1572962.
JD080583 - Sequence 61607 from Patent EP1572962.
JD066518 - Sequence 47542 from Patent EP1572962.
JD369128 - Sequence 350152 from Patent EP1572962.
JD186488 - Sequence 167512 from Patent EP1572962.
JD465487 - Sequence 446511 from Patent EP1572962.
JD431833 - Sequence 412857 from Patent EP1572962.
JD494553 - Sequence 475577 from Patent EP1572962.
JD271958 - Sequence 252982 from Patent EP1572962.
AF514997 - Homo sapiens nucleoporin Nup43 mRNA, complete cds.
JD146519 - Sequence 127543 from Patent EP1572962.
BX647097 - Homo sapiens mRNA; cDNA DKFZp686H19158 (from clone DKFZp686H19158).
AK304244 - Homo sapiens cDNA FLJ53749 complete cds, moderately similar to Nucleoporin Nup43.
LF321592 - JP 2014500723-A/129095: Polycomb-Associated Non-Coding RNAs.
JD433304 - Sequence 414328 from Patent EP1572962.
KJ896124 - Synthetic construct Homo sapiens clone ccsbBroadEn_05518 NUP43 gene, encodes complete protein.
AM392678 - Synthetic construct Homo sapiens clone IMAGE:100002142 for hypothetical protein (NUP43 gene).
AK304505 - Homo sapiens cDNA FLJ61080 complete cds, highly similar to Nucleoporin Nup43.
AK301027 - Homo sapiens cDNA FLJ54281 complete cds, highly similar to Nucleoporin Nup43.
LF321591 - JP 2014500723-A/129094: Polycomb-Associated Non-Coding RNAs.
CU688006 - Synthetic construct Homo sapiens gateway clone IMAGE:100021709 5' read NUP43 mRNA.
LF321590 - JP 2014500723-A/129093: Polycomb-Associated Non-Coding RNAs.
MA620192 - JP 2018138019-A/192118: Polycomb-Associated Non-Coding RNAs.
MA557169 - JP 2018138019-A/129095: Polycomb-Associated Non-Coding RNAs.
MA557168 - JP 2018138019-A/129094: Polycomb-Associated Non-Coding RNAs.
MA557167 - JP 2018138019-A/129093: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: AK023349, NM_198887
UCSC ID: uc003qmx.4
RefSeq Accession: NM_198887

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: AK023349.1
exon count: 4CDS single in 3' UTR: no RNA size: 2196
ORF size: 0CDS single in intron: no Alignment % ID: 99.73
txCdsPredict score: 632.00frame shift in genome: no % Coverage: 99.82
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.