Human Gene ERMP1 (uc003zjn.1) Description and Page Index
  Description: Homo sapiens endoplasmic reticulum metallopeptidase 1 (ERMP1), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr9:5,812,737-5,833,081 Size: 20,345 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr9:5,812,812-5,833,027 Size: 20,216 Coding Exon Count: 5 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:5,812,737-5,833,081)mRNA (may differ from genome)Protein (365 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneCardsGeneNetwork
H-INVHGNCLynxMGIOMIMPubMed
Stanford SOURCE

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 13.78 RPKM in Brain - Spinal cord (cervical c-1)
Total median expression: 308.84 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -22.9054-0.424 Picture PostScript Text
3' UTR -14.1075-0.188 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Descriptions from all associated GenBank mRNAs
  AK127218 - Homo sapiens cDNA FLJ45285 fis, clone BRHIP3002000, highly similar to Rattus norvegicus endoplasmic reticulum metallopeptidase 1 (Ermp1), mRNA.
LF211300 - JP 2014500723-A/18803: Polycomb-Associated Non-Coding RNAs.
AL834191 - Homo sapiens mRNA; cDNA DKFZp762E096 (from clone DKFZp762E096).
AB058718 - Homo sapiens mRNA for KIAA1815 protein, partial cds.
BC136771 - Homo sapiens endoplasmic reticulum metallopeptidase 1, mRNA (cDNA clone MGC:168384 IMAGE:9020761), complete cds.
BC136773 - Homo sapiens endoplasmic reticulum metallopeptidase 1, mRNA (cDNA clone MGC:168386 IMAGE:9020763), complete cds.
BC144404 - Homo sapiens cDNA clone IMAGE:9052925.
AK093217 - Homo sapiens cDNA FLJ35898 fis, clone TESTI2009520, highly similar to Rattus norvegicus endoplasmic reticulum metallopeptidase 1 (Ermp1), mRNA.
AX747995 - Sequence 1520 from Patent EP1308459.
LF345383 - JP 2014500723-A/152886: Polycomb-Associated Non-Coding RNAs.
JD423531 - Sequence 404555 from Patent EP1572962.
JD269992 - Sequence 251016 from Patent EP1572962.
JD310906 - Sequence 291930 from Patent EP1572962.
JD244512 - Sequence 225536 from Patent EP1572962.
JD197534 - Sequence 178558 from Patent EP1572962.
JD039960 - Sequence 20984 from Patent EP1572962.
LF345388 - JP 2014500723-A/152891: Polycomb-Associated Non-Coding RNAs.
JD057479 - Sequence 38503 from Patent EP1572962.
JD409025 - Sequence 390049 from Patent EP1572962.
JD408164 - Sequence 389188 from Patent EP1572962.
LF345390 - JP 2014500723-A/152893: Polycomb-Associated Non-Coding RNAs.
JD129157 - Sequence 110181 from Patent EP1572962.
MA580960 - JP 2018138019-A/152886: Polycomb-Associated Non-Coding RNAs.
MA580965 - JP 2018138019-A/152891: Polycomb-Associated Non-Coding RNAs.
MA580967 - JP 2018138019-A/152893: Polycomb-Associated Non-Coding RNAs.
MA446877 - JP 2018138019-A/18803: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: AX721170, NM_024896, NP_079172
UCSC ID: uc003zjn.1
RefSeq Accession: NM_024896

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AX721170.1
exon count: 5CDS single in 3' UTR: no RNA size: 1218
ORF size: 1098CDS single in intron: no Alignment % ID: 99.92
txCdsPredict score: 2372.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 152# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.