Human Gene DNAJB5 (uc003zvs.4) Description and Page Index
  Description: Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 5 (DNAJB5), transcript variant 2, mRNA.
RefSeq Summary (NM_001135004): This gene encodes a member of the DNAJ heat shock protein 40 family of co-chaperone proteins. The encoded protein contains an N-terminal DNAJ domain and a C-terminal substrate binding domain but lacks the cysteine-rich domain found in other DNAJ family members. In mice, a multi-protein complex containing this protein, thioredoxin 1, and histone deacetylase 4, serves as a master negative regulator of cardiac hypertrophy. [provided by RefSeq, Mar 2017].
Transcript (Including UTRs)
   Position: hg19 chr9:34,989,638-34,998,430 Size: 8,793 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr9:34,989,666-34,997,256 Size: 7,591 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:34,989,638-34,998,430)mRNA (may differ from genome)Protein (462 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCLynxMGIOMIM
PubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: J3KQM9_HUMAN
DESCRIPTION: SubName: Full=DnaJ homolog subfamily B member 5;
CAUTION: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D013749 Tetrachlorodibenzodioxin
  • C573693 2-(4-((4-(6-methoxy-3-pyridinyl)-5-(4-(trifluoromethoxy)phenyl)-2-thiazolyl)methoxy)-2-methylphenoxy)acetic acid
  • C472791 3-(4'-hydroxy-3'-adamantylbiphenyl-4-yl)acrylic acid
  • C547126 AZM551248
  • D000082 Acetaminophen
  • D019256 Cadmium Chloride
  • D002794 Choline
  • D003513 Cycloheximide
  • D004121 Dimethyl Sulfoxide
  • D005492 Folic Acid
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 23.91 RPKM in Muscle - Skeletal
Total median expression: 333.67 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -5.0228-0.179 Picture PostScript Text
3' UTR -436.301174-0.372 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002939 - DnaJ_C
IPR001623 - DnaJ_N
IPR018253 - Heat_shock_DnaJ_CS
IPR008971 - HSP40/DnaJ_pept-bd
IPR003095 - Hsp_DnaJ

Pfam Domains:
PF00226 - DnaJ domain
PF01556 - DnaJ C terminal domain

SCOP Domains:
46565 - Chaperone J-domain
49493 - HSP40/DnaJ peptide-binding domain

ModBase Predicted Comparative 3D Structure on J3KQM9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LF206425 - JP 2014500723-A/13928: Polycomb-Associated Non-Coding RNAs.
AK023253 - Homo sapiens cDNA FLJ13191 fis, clone NT2RP3004262, highly similar to DnaJ homolog subfamily B member 5.
BC012115 - Homo sapiens DnaJ (Hsp40) homolog, subfamily B, member 5, mRNA (cDNA clone MGC:20128 IMAGE:4684829), complete cds.
AK314671 - Homo sapiens cDNA, FLJ95519.
AF087870 - Homo sapiens heat shock protein 40 mRNA, complete cds.
AK299647 - Homo sapiens cDNA FLJ56830 complete cds, highly similar to DnaJ homolog subfamily B member 5.
AF088982 - Homo sapiens heat shock protein hsp40-3 mRNA, complete cds.
DQ895388 - Synthetic construct Homo sapiens clone IMAGE:100009848; FLH183912.01L; RZPDo839A03143D DnaJ (Hsp40) homolog, subfamily B, member 5 (DNAJB5) gene, encodes complete protein.
KJ902376 - Synthetic construct Homo sapiens clone ccsbBroadEn_11770 DNAJB5 gene, encodes complete protein.
DQ892192 - Synthetic construct clone IMAGE:100004822; FLH183916.01X; RZPDo839A03144D DnaJ (Hsp40) homolog, subfamily B, member 5 (DNAJB5) gene, encodes complete protein.
MA442002 - JP 2018138019-A/13928: Polycomb-Associated Non-Coding RNAs.
JD535820 - Sequence 516844 from Patent EP1572962.
JD357641 - Sequence 338665 from Patent EP1572962.
JD229123 - Sequence 210147 from Patent EP1572962.
LF354307 - JP 2014500723-A/161810: Polycomb-Associated Non-Coding RNAs.
LF354309 - JP 2014500723-A/161812: Polycomb-Associated Non-Coding RNAs.
MA589884 - JP 2018138019-A/161810: Polycomb-Associated Non-Coding RNAs.
MA589886 - JP 2018138019-A/161812: Polycomb-Associated Non-Coding RNAs.
LF354314 - JP 2014500723-A/161817: Polycomb-Associated Non-Coding RNAs.
LF354315 - JP 2014500723-A/161818: Polycomb-Associated Non-Coding RNAs.
JD068207 - Sequence 49231 from Patent EP1572962.
JD053851 - Sequence 34875 from Patent EP1572962.
JD229393 - Sequence 210417 from Patent EP1572962.
JD365457 - Sequence 346481 from Patent EP1572962.
JD117897 - Sequence 98921 from Patent EP1572962.
JD223170 - Sequence 204194 from Patent EP1572962.
JD065223 - Sequence 46247 from Patent EP1572962.
JD109729 - Sequence 90753 from Patent EP1572962.
JD081784 - Sequence 62808 from Patent EP1572962.
JD059897 - Sequence 40921 from Patent EP1572962.
JD422213 - Sequence 403237 from Patent EP1572962.
JD227083 - Sequence 208107 from Patent EP1572962.
JD538566 - Sequence 519590 from Patent EP1572962.
JD493188 - Sequence 474212 from Patent EP1572962.
JD099361 - Sequence 80385 from Patent EP1572962.
JD507471 - Sequence 488495 from Patent EP1572962.
JD072638 - Sequence 53662 from Patent EP1572962.
JD282177 - Sequence 263201 from Patent EP1572962.
JD204400 - Sequence 185424 from Patent EP1572962.
JD558654 - Sequence 539678 from Patent EP1572962.
JD398287 - Sequence 379311 from Patent EP1572962.
JD156084 - Sequence 137108 from Patent EP1572962.
JD186355 - Sequence 167379 from Patent EP1572962.
JD368643 - Sequence 349667 from Patent EP1572962.
JD158237 - Sequence 139261 from Patent EP1572962.
JD541102 - Sequence 522126 from Patent EP1572962.
JD288346 - Sequence 269370 from Patent EP1572962.
JD121315 - Sequence 102339 from Patent EP1572962.
JD297438 - Sequence 278462 from Patent EP1572962.
LF354316 - JP 2014500723-A/161819: Polycomb-Associated Non-Coding RNAs.
JD049367 - Sequence 30391 from Patent EP1572962.
MA589891 - JP 2018138019-A/161817: Polycomb-Associated Non-Coding RNAs.
MA589892 - JP 2018138019-A/161818: Polycomb-Associated Non-Coding RNAs.
MA589893 - JP 2018138019-A/161819: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: J3KQM9, J3KQM9_HUMAN, NM_001135004, NP_036398, uc003zvs.3
UCSC ID: uc003zvs.4
RefSeq Accession: NM_001135004
Protein: J3KQM9 CCDS: CCDS47960.2

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001135004.2
exon count: 5CDS single in 3' UTR: no RNA size: 2610
ORF size: 1389CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 2978.00frame shift in genome: no % Coverage: 99.27
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.