Human Gene GPR107 (uc004bzb.2) Description and Page Index
  Description: Homo sapiens G protein-coupled receptor 107 (GPR107), transcript variant 3, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr9:132,815,985-132,892,303 Size: 76,319 Total Exon Count: 17 Strand: +
Coding Region
   Position: hg19 chr9:132,848,702-132,891,044 Size: 42,343 Coding Exon Count: 11 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:132,815,985-132,892,303)mRNA (may differ from genome)Protein (332 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblExonPrimerGeneCardsGeneNetworkH-INV
HGNCLynxMGIPubMedStanford SOURCEUniProtKB
Wikipedia

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 17.24 RPKM in Thyroid
Total median expression: 544.01 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -297.49790-0.377 Picture PostScript Text
3' UTR -452.351259-0.359 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF06814 - Lung seven transmembrane receptor
PF10192 - Rhodopsin-like GPCR transmembrane domain

ModBase Predicted Comparative 3D Structure on Q5VW38-2
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC039728 - Homo sapiens G protein-coupled receptor 107, mRNA (cDNA clone IMAGE:5750558), containing frame-shift errors.
BC143655 - Homo sapiens G protein-coupled receptor 107, mRNA (cDNA clone IMAGE:9052169), partial cds.
AK225456 - Homo sapiens mRNA for Splice isoform 3 of Q5VW38 variant, clone: HSI03124.
AK026244 - Homo sapiens cDNA: FLJ22591 fis, clone HSI03124.
BC030147 - Homo sapiens G protein-coupled receptor 107, mRNA (cDNA clone IMAGE:4560526), partial cds.
BC110518 - Homo sapiens G protein-coupled receptor 107, mRNA (cDNA clone MGC:126118 IMAGE:40033360), complete cds.
AF376725 - Homo sapiens lung seven transmembrane receptor 1 (LUSTR1) mRNA, complete cds.
AX776003 - Sequence 273 from Patent WO03048202.
AK293092 - Homo sapiens cDNA FLJ75421 complete cds, highly similar to Homo sapiens lung seven transmembrane receptor 1 (LUSTR1) mRNA.
AB385490 - Synthetic construct DNA, clone: pF1KA1624, Homo sapiens GPR107 gene for G-protein coupled receptor 107, complete cds, without stop codon, in Flexi system.
KJ894453 - Synthetic construct Homo sapiens clone ccsbBroadEn_03847 GPR107 gene, encodes complete protein.
AB046844 - Homo sapiens mRNA for KIAA1624 protein, partial cds.
AL834359 - Homo sapiens mRNA; cDNA DKFZp667C222 (from clone DKFZp667C222).
JD184136 - Sequence 165160 from Patent EP1572962.
JD092956 - Sequence 73980 from Patent EP1572962.
JD518641 - Sequence 499665 from Patent EP1572962.
JD227464 - Sequence 208488 from Patent EP1572962.
JD173165 - Sequence 154189 from Patent EP1572962.
JD428580 - Sequence 409604 from Patent EP1572962.
LF205634 - JP 2014500723-A/13137: Polycomb-Associated Non-Coding RNAs.
LF346691 - JP 2014500723-A/154194: Polycomb-Associated Non-Coding RNAs.
AK023462 - Homo sapiens cDNA FLJ13400 fis, clone PLACE1001414.
BC040059 - Homo sapiens cDNA clone IMAGE:6157729, partial cds.
MA582268 - JP 2018138019-A/154194: Polycomb-Associated Non-Coding RNAs.
MA441211 - JP 2018138019-A/13137: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: BC030147, KIAA1624, LUSTR1, Q5VW38-2
UCSC ID: uc004bzb.2
RefSeq Accession: NM_020960
Protein: Q5VW38-2, splice isoform of Q5VW38

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC030147.2
exon count: 17CDS single in 3' UTR: no RNA size: 2852
ORF size: 999CDS single in intron: no Alignment % ID: 99.86
txCdsPredict score: 1386.00frame shift in genome: no % Coverage: 99.30
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 1263# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.