Human Gene MAP3K5 (uc010kgw.1) Description and Page Index
  Description: Homo sapiens mitogen-activated protein kinase kinase kinase 5 (MAP3K5), mRNA.
RefSeq Summary (NM_005923): Mitogen-activated protein kinase (MAPK) signaling cascades include MAPK or extracellular signal-regulated kinase (ERK), MAPK kinase (MKK or MEK), and MAPK kinase kinase (MAPKKK or MEKK). MAPKK kinase/MEKK phosphorylates and activates its downstream protein kinase, MAPK kinase/MEK, which in turn activates MAPK. The kinases of these signaling cascades are highly conserved, and homologs exist in yeast, Drosophila, and mammalian cells. MAPKKK5 contains 1,374 amino acids with all 11 kinase subdomains. Northern blot analysis shows that MAPKKK5 transcript is abundantly expressed in human heart and pancreas. The MAPKKK5 protein phosphorylates and activates MKK4 (aliases SERK1, MAPKK4) in vitro, and activates c-Jun N-terminal kinase (JNK)/stress-activated protein kinase (SAPK) during transient expression in COS and 293 cells; MAPKKK5 does not activate MAPK/ERK. [provided by RefSeq, Jul 2008]. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: SRR1660809.22198.1, U67156.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMEA1965299, SAMEA1966682 [ECO:0000350] ##Evidence-Data-END## ##RefSeq-Attributes-START## MANE Ensembl match :: ENST00000359015.5/ ENSP00000351908.4 RefSeq Select criteria :: based on conservation, expression ##RefSeq-Attributes-END##
Transcript (Including UTRs)
   Position: hg19 chr6:136,977,131-137,113,656 Size: 136,526 Total Exon Count: 10 Strand: -
Coding Region
   Position: hg19 chr6:136,977,325-137,113,295 Size: 135,971 Coding Exon Count: 10 

Page IndexSequence and LinksGenetic AssociationsMalaCardsCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsPathways
Other NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:136,977,131-137,113,656)mRNA (may differ from genome)Protein (599 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblEntrez GeneExonPrimerGeneCards
GeneNetworkH-INVHGNCLynxMGIOMIM
PubMedStanford SOURCETreefamWikipedia

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): MAP3K5
CDC HuGE Published Literature: MAP3K5
Positive Disease Associations: Attention Deficit Disorder with Hyperactivity , Diabetic Nephropathies , Heart Rate
Related Studies:
  1. Attention Deficit Disorder with Hyperactivity
    , , . [PubMed 0]
  2. Attention Deficit Disorder with Hyperactivity
    , , . [PubMed 0]
  3. Diabetic Nephropathies
    , , . [PubMed 0]
           more ... click here to view the complete list

-  MalaCards Disease Associations
  MalaCards Gene Search: MAP3K5
Diseases sorted by gene-association score: ischemia (5), hiv-1 (5), fatty liver disease (4), amphetamine abuse (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 78.43 RPKM in Adrenal Gland
Total median expression: 582.03 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -198.90361-0.551 Picture PostScript Text
3' UTR -41.30194-0.213 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene Details     
Gene Sorter     
      
      
      

-  Descriptions from all associated GenBank mRNAs
  HH933925 - Sequence 119 from Patent WO2010111464.
HV964429 - JP 2012521760-A/119: RNA Interference Mediated Inhibition of Apoptosis Signal-Regulating Kinase 1 (ASK1) Gene Expression Using Short Interfering Nucleic Acid (siNA).
U67156 - Human mitogen-activated kinase kinase kinase 5 (MAPKKK5) mRNA, complete cds.
AK294507 - Homo sapiens cDNA FLJ50139 complete cds, highly similar to Mitogen-activated protein kinase kinase kinase 5(EC 2.7.11.25).
BC054503 - Homo sapiens mitogen-activated protein kinase kinase kinase 5, mRNA (cDNA clone MGC:60047 IMAGE:6143181), complete cds.
BC088829 - Homo sapiens mitogen-activated protein kinase kinase kinase 5, mRNA (cDNA clone MGC:87795 IMAGE:6007002), complete cds.
D84476 - Homo sapiens ASK1 mRNA for apoptosis signal-regulating kinase 1, complete cds.
AB209093 - Homo sapiens mRNA for mitogen-activated protein kinase kinase kinase 5 variant protein.
AB384845 - Synthetic construct DNA, clone: pF1KB3725, Homo sapiens MAP3K5 gene for mitogen-activated protein kinase kinase kinase 5, complete cds, without stop codon, in Flexi system.
AK293953 - Homo sapiens cDNA FLJ51736 partial cds, highly similar to Mitogen-activated protein kinase kinase kinase 5 (EC 2.7.11.25).
AK310942 - Homo sapiens cDNA, FLJ17984.
JD203566 - Sequence 184590 from Patent EP1572962.
JD104533 - Sequence 85557 from Patent EP1572962.
JD424390 - Sequence 405414 from Patent EP1572962.
JD257219 - Sequence 238243 from Patent EP1572962.
JD071604 - Sequence 52628 from Patent EP1572962.
JD095860 - Sequence 76884 from Patent EP1572962.
JD513837 - Sequence 494861 from Patent EP1572962.
JD394184 - Sequence 375208 from Patent EP1572962.
MP015053 - Sequence 256 from Patent WO2019016252.

-  Biochemical and Signaling Pathways
  KEGG - Kyoto Encyclopedia of Genes and Genomes
hsa04010 - MAPK signaling pathway
hsa04722 - Neurotrophin signaling pathway
hsa05014 - Amyotrophic lateral sclerosis (ALS)

BioCarta from NCI Cancer Genome Anatomy Project
h_keratinocytePathway - Keratinocyte Differentiation
h_41bbPathway - The 4-1BB-dependent immune response
h_HivnefPathway - HIV-I Nef: negative effector of Fas and TNF
h_mapkPathway - MAPKinase Signaling Pathway
h_p38mapkPathway - p38 MAPK Signaling Pathway

-  Other Names for This Gene
  Alternate Gene Symbols: AK310942, NM_005923, NP_005914
UCSC ID: uc010kgw.1
RefSeq Accession: NM_005923

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK310942.1
exon count: 10CDS single in 3' UTR: no RNA size: 2134
ORF size: 1800CDS single in intron: no Alignment % ID: 99.81
txCdsPredict score: 3617.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 314# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.