Human Gene TMEM194A (uc010sra.2) Description and Page Index
  Description: Homo sapiens transmembrane protein 194A (TMEM194A), transcript variant 1, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr12:57,449,426-57,472,574 Size: 23,149 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg19 chr12:57,453,662-57,457,104 Size: 3,443 Coding Exon Count: 3 

Page IndexSequence and LinksCTDGene AllelesRNA-Seq ExpressionMicroarray Expression
RNA StructureOther SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:57,449,426-57,472,574)mRNA (may differ from genome)Protein (185 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblExonPrimerGeneCardsGeneNetwork
H-INVHGNCLynxMGIPubMedStanford SOURCE
Treefam

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.80 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 213.75 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -196.09562-0.349 Picture PostScript Text
3' UTR -1180.274236-0.279 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologGenome BrowserNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
 Protein Sequence    
 Alignment    

-  Descriptions from all associated GenBank mRNAs
  KJ893355 - Synthetic construct Homo sapiens clone ccsbBroadEn_02749 TMEM194A gene, encodes complete protein.
CR749406 - Homo sapiens mRNA; cDNA DKFZp686N1768 (from clone DKFZp686N1768).
AB006624 - Homo sapiens mRNA for KIAA0286 gene.
AL833310 - Homo sapiens mRNA; cDNA DKFZp313B107 (from clone DKFZp313B107).
AL833311 - Homo sapiens mRNA; cDNA DKFZp313C037 (from clone DKFZp313C037).
JD038785 - Sequence 19809 from Patent EP1572962.
JD168099 - Sequence 149123 from Patent EP1572962.
JD283701 - Sequence 264725 from Patent EP1572962.
JD314397 - Sequence 295421 from Patent EP1572962.
JD361022 - Sequence 342046 from Patent EP1572962.
BC071597 - Homo sapiens transmembrane protein 194A, mRNA (cDNA clone IMAGE:30344897), partial cds.
JD082857 - Sequence 63881 from Patent EP1572962.
JD314286 - Sequence 295310 from Patent EP1572962.
JD345858 - Sequence 326882 from Patent EP1572962.
JD291828 - Sequence 272852 from Patent EP1572962.
JD349174 - Sequence 330198 from Patent EP1572962.
JD296687 - Sequence 277711 from Patent EP1572962.
JD330895 - Sequence 311919 from Patent EP1572962.
JD252166 - Sequence 233190 from Patent EP1572962.
JD166963 - Sequence 147987 from Patent EP1572962.
JD455832 - Sequence 436856 from Patent EP1572962.
JD352650 - Sequence 333674 from Patent EP1572962.
JD095422 - Sequence 76446 from Patent EP1572962.
JD399822 - Sequence 380846 from Patent EP1572962.
JD392852 - Sequence 373876 from Patent EP1572962.
JD549085 - Sequence 530109 from Patent EP1572962.
JD467474 - Sequence 448498 from Patent EP1572962.
JD231371 - Sequence 212395 from Patent EP1572962.
JD204747 - Sequence 185771 from Patent EP1572962.
JD296617 - Sequence 277641 from Patent EP1572962.
JD450430 - Sequence 431454 from Patent EP1572962.
JD202755 - Sequence 183779 from Patent EP1572962.
JD375028 - Sequence 356052 from Patent EP1572962.
JD506844 - Sequence 487868 from Patent EP1572962.
JD234593 - Sequence 215617 from Patent EP1572962.
JD192361 - Sequence 173385 from Patent EP1572962.
JD145969 - Sequence 126993 from Patent EP1572962.
JD552588 - Sequence 533612 from Patent EP1572962.
JD319101 - Sequence 300125 from Patent EP1572962.
JD508152 - Sequence 489176 from Patent EP1572962.
JD176297 - Sequence 157321 from Patent EP1572962.
JD553134 - Sequence 534158 from Patent EP1572962.
JD553133 - Sequence 534157 from Patent EP1572962.
JD347996 - Sequence 329020 from Patent EP1572962.
JD161892 - Sequence 142916 from Patent EP1572962.
JD197463 - Sequence 178487 from Patent EP1572962.
JD409796 - Sequence 390820 from Patent EP1572962.
JD058469 - Sequence 39493 from Patent EP1572962.
JD565485 - Sequence 546509 from Patent EP1572962.
JD256305 - Sequence 237329 from Patent EP1572962.
JD122899 - Sequence 103923 from Patent EP1572962.
JD556668 - Sequence 537692 from Patent EP1572962.
JD147387 - Sequence 128411 from Patent EP1572962.
JD382679 - Sequence 363703 from Patent EP1572962.
JD319100 - Sequence 300124 from Patent EP1572962.
JD250293 - Sequence 231317 from Patent EP1572962.
JD304869 - Sequence 285893 from Patent EP1572962.
JD449786 - Sequence 430810 from Patent EP1572962.
BC117436 - Homo sapiens transmembrane protein 194A, mRNA (cDNA clone MGC:151045 IMAGE:40125987), complete cds.
BC126300 - Homo sapiens transmembrane protein 194A, mRNA (cDNA clone MGC:161578 IMAGE:8992016), complete cds.
BC144029 - Homo sapiens cDNA clone IMAGE:9052549, with apparent retained intron.
AK294566 - Homo sapiens cDNA FLJ53781 complete cds.
JD532824 - Sequence 513848 from Patent EP1572962.
JD263377 - Sequence 244401 from Patent EP1572962.
JD286498 - Sequence 267522 from Patent EP1572962.
JD512438 - Sequence 493462 from Patent EP1572962.
AB383838 - Synthetic construct DNA, clone: pF1KSDA0286, Homo sapiens KIAA0286 gene for KIAA0286 protein, complete cds, without stop codon, in Flexi system.
HQ258223 - Synthetic construct Homo sapiens clone IMAGE:100072532 transmembrane protein 194A (TMEM194A), transcript variant 2 (TMEM194A) gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: BC144029
UCSC ID: uc010sra.2
RefSeq Accession: NM_001130963

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: BC144029.1
exon count: 8CDS single in 3' UTR: no RNA size: 1381
ORF size: 558CDS single in intron: no Alignment % ID: 99.93
txCdsPredict score: 764.00frame shift in genome: no % Coverage: 99.78
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.