Human Gene RBM24 (uc011diy.2) Description and Page Index
  Description: Homo sapiens RNA binding motif protein 24 (RBM24), transcript variant 2, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr6:17,290,200-17,294,099 Size: 3,900 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr6:17,290,257-17,292,363 Size: 2,107 Coding Exon Count: 3 

Page IndexSequence and LinksGenetic AssociationsCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesmRNA DescriptionsOther Names
Model InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr6:17,290,200-17,294,099)mRNA (may differ from genome)Protein (154 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaBioGPS
CGAPEnsemblEntrez GeneExonPrimerGeneCardsH-INV
HGNCLynxMGIOMIMPubMedStanford SOURCE
TreefamUniProtKB

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): RBM24
CDC HuGE Published Literature: RBM24
Positive Disease Associations: Blood Pressure Determination
Related Studies:
  1. Blood Pressure Determination
    , , . [PubMed 0]

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 80.71 RPKM in Muscle - Skeletal
Total median expression: 277.99 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -14.0057-0.246 Picture PostScript Text
3' UTR -401.961736-0.232 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  ModBase Predicted Comparative 3D Structure on B7Z6B7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  AK095016 - Homo sapiens cDNA FLJ37697 fis, clone BRHIP2015360, highly similar to Xenopus laevis RRM-containing protein SEB-4 mRNA.
AK293052 - Homo sapiens cDNA FLJ76592 complete cds.
AK315856 - Homo sapiens cDNA, FLJ79505 complete cds, highly similar to RNA-binding region-containing protein 1.
AB528899 - Synthetic construct DNA, clone: pF1KE0661, Homo sapiens RBM24 gene for RNA binding motif protein 24, without stop codon, in Flexi system.
AY547318 - Homo sapiens unknown mRNA.
AK129865 - Homo sapiens cDNA FLJ26355 fis, clone HRT04952.
AK055391 - Homo sapiens cDNA FLJ30829 fis, clone FEBRA2001790, highly similar to Xenopus laevis RRM-containing protein SEB-4 mRNA.
BC104808 - Homo sapiens RNA binding motif protein 24, mRNA (cDNA clone MGC:132468 IMAGE:8143811), complete cds.
BC104810 - Homo sapiens RNA binding motif protein 24, mRNA (cDNA clone MGC:132470 IMAGE:8143813), complete cds.
KJ895869 - Synthetic construct Homo sapiens clone ccsbBroadEn_05263 RBM24 gene, encodes complete protein.
BC040928 - Homo sapiens RNA binding motif protein 24, mRNA (cDNA clone IMAGE:4151433), partial cds.
AL832199 - Homo sapiens mRNA; cDNA DKFZp686G042 (from clone DKFZp686G042).
AL833156 - Homo sapiens mRNA; cDNA DKFZp313P0740 (from clone DKFZp313P0740).
AK300068 - Homo sapiens cDNA FLJ52748 complete cds.
AK300062 - Homo sapiens cDNA FLJ54967 complete cds.
JD200359 - Sequence 181383 from Patent EP1572962.
JD088984 - Sequence 70008 from Patent EP1572962.
BC018674 - Homo sapiens RNA binding motif protein 24, mRNA (cDNA clone IMAGE:4291964), with apparent retained intron.
JD038154 - Sequence 19178 from Patent EP1572962.
BC065748 - Homo sapiens cDNA clone IMAGE:3934015, partial cds.
JD047109 - Sequence 28133 from Patent EP1572962.
JD433432 - Sequence 414456 from Patent EP1572962.
JD026514 - Sequence 7538 from Patent EP1572962.
JD027914 - Sequence 8938 from Patent EP1572962.
JD311523 - Sequence 292547 from Patent EP1572962.
JD363901 - Sequence 344925 from Patent EP1572962.
JD238529 - Sequence 219553 from Patent EP1572962.
JD492473 - Sequence 473497 from Patent EP1572962.
JD147347 - Sequence 128371 from Patent EP1572962.
JD092398 - Sequence 73422 from Patent EP1572962.
JD297280 - Sequence 278304 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: AK300068, B7Z6B7, B7Z6B7_HUMAN, NM_001143941, NP_001137413
UCSC ID: uc011diy.2
RefSeq Accession: NM_001143941
Protein: B7Z6B7

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: AK300068.1
exon count: 3CDS single in 3' UTR: no RNA size: 1413
ORF size: 465CDS single in intron: no Alignment % ID: 99.79
txCdsPredict score: 1030.00frame shift in genome: no % Coverage: 100.00
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.