Human Gene C1orf63 (uc021ojj.1) Description and Page Index
  Description: Homo sapiens chromosome 1 open reading frame 63 (C1orf63), mRNA.
Transcript (Including UTRs)
   Position: hg19 chr1:25,568,740-25,664,656 Size: 95,917 Total Exon Count: 6 Strand: -


Page IndexSequence and LinksGenetic AssociationsCTDRNA-Seq ExpressionMicroarray Expression
Other SpeciesmRNA DescriptionsOther NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:25,568,740-25,664,656)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblEntrez GeneExonPrimerGeneNetwork
H-INVHGNCLynxPubMedStanford SOURCE

-  Genetic Association Studies of Complex Diseases and Disorders
  Genetic Association Database (archive): C1orf63
CDC HuGE Published Literature: C1orf63
Positive Disease Associations: Blood Sedimentation , Myocardial Infarction
Related Studies:
  1. Blood Sedimentation
    Iftikhar J Kullo et al. American journal of human genetics 2011, Complement receptor 1 gene variants are associated with erythrocyte sedimentation rate., American journal of human genetics. [PubMed 21700265]
  2. Myocardial Infarction
    , , . [PubMed 0]

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 51.13 RPKM in Pituitary
Total median expression: 1191.49 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  BC065040 - Homo sapiens chromosome 1 open reading frame 63, mRNA (cDNA clone MGC:74698 IMAGE:6147639), complete cds.
BC001892 - Homo sapiens chromosome 1 open reading frame 63, mRNA (cDNA clone MGC:1827 IMAGE:3534629), complete cds.
AF267856 - Homo sapiens HT033 mRNA, complete cds.
AK226012 - Homo sapiens mRNA for NPD014 protein isoform 2 variant, clone: FCC107D08.
BC041843 - Homo sapiens chromosome 1 open reading frame 63, mRNA (cDNA clone MGC:43558 IMAGE:5269181), complete cds.
AK292532 - Homo sapiens cDNA FLJ77191 complete cds.
JD503402 - Sequence 484426 from Patent EP1572962.
JD053489 - Sequence 34513 from Patent EP1572962.
JD347964 - Sequence 328988 from Patent EP1572962.
JD377240 - Sequence 358264 from Patent EP1572962.
JD155278 - Sequence 136302 from Patent EP1572962.
HQ447247 - Synthetic construct Homo sapiens clone IMAGE:100070553; CCSB003657_03 chromosome 1 open reading frame 63 (C1orf63) gene, encodes complete protein.
KJ899294 - Synthetic construct Homo sapiens clone ccsbBroadEn_08688 C1orf63 gene, encodes complete protein.
CU674918 - Synthetic construct Homo sapiens gateway clone IMAGE:100018078 5' read C1orf63 mRNA.
AF247168 - Homo sapiens NPD014 (NPD014) mRNA, complete cds.
AK027318 - Homo sapiens cDNA FLJ14412 fis, clone HEMBA1004669, weakly similar to SON PROTEIN.
AK296798 - Homo sapiens cDNA FLJ55092 complete cds.
AK311029 - Homo sapiens cDNA, FLJ18071.
DQ575922 - Homo sapiens piRNA piR-44034, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: BC041843, NM_020317
UCSC ID: uc021ojj.1
RefSeq Accession: NM_020317

-  Gene Model Information
 
category: nearCoding nonsense-mediated-decay: yes RNA accession: BC041843.1
exon count: 6CDS single in 3' UTR: no RNA size: 3079
ORF size: 0CDS single in intron: no Alignment % ID: 99.93
txCdsPredict score: 907.00frame shift in genome: no % Coverage: 98.57
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.