Human Gene TRNA (uc021skk.1) Description and Page Index
  Description: Rfam model RF00005 hit found at contig region AC051619.7/69973-69902
Transcript (Including UTRs)
   Position: hg19 chr15:45,490,804-45,490,875 Size: 72 Total Exon Count: 1 Strand: -

Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
Genomic Sequence (chr15:45,490,804-45,490,875)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.96 RPKM in Testis
Total median expression: 18.53 RPKM

View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog

-  Descriptions from all associated GenBank mRNAs
  DQ597975 - Homo sapiens piRNA piR-36041, complete sequence.
DQ576872 - Homo sapiens piRNA piR-44984, complete sequence.
DQ571243 - Homo sapiens piRNA piR-31355, complete sequence.
DQ597974 - Homo sapiens piRNA piR-36040, complete sequence.
DQ597973 - Homo sapiens piRNA piR-36039, complete sequence.
DQ597972 - Homo sapiens piRNA piR-36038, complete sequence.

-  Other Names for This Gene
  UCSC ID: uc021skk.1

-  Gene Model Information
category: noncoding nonsense-mediated-decay: no RNA accession: RF00005;Alias=tRNA;Note=AC051619.7/69973-69902
exon count: 1CDS single in 3' UTR: no RNA size: 72
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 0.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.