Human Gene U1 (uc021tkb.1) Description and Page Index
  Description: Rfam model RF00003 hit found at contig region AC009061.10/87254-87095
Transcript (Including UTRs)
   Position: hg19 chr16:67,424,594-67,424,753 Size: 160 Total Exon Count: 1 Strand: -


Page IndexSequence and LinksRNA-Seq ExpressionMicroarray ExpressionOther SpeciesmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:67,424,594-67,424,753)mRNA (may differ from genome)No protein
Gene SorterGenome BrowserOther Species FASTATable SchemaEnsemblExonPrimer
PubMed

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 2.61 RPKM in Skin - Not Sun Exposed (Suprapubic)
Total median expression: 13.33 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Descriptions from all associated GenBank mRNAs
  LF208275 - JP 2014500723-A/15778: Polycomb-Associated Non-Coding RNAs.
MA443852 - JP 2018138019-A/15778: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  UCSC ID: uc021tkb.1

-  Gene Model Information
 
category: noncoding nonsense-mediated-decay: no RNA accession: RF00003;Alias=U1;Note=AC009061.10/87254-87095
exon count: 1CDS single in 3' UTR: no RNA size: 160
ORF size: 0CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 0.00frame shift in genome: no % Coverage: 100.00
has start codon: no stop codon in genome: no # of Alignments: 1
has end codon: no retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.