Human Gene C20orf112 (uc031rss.1) Description and Page Index
  Description: Homo sapiens chromosome 20 open reading frame 112 (C20orf112), transcript variant 1, mRNA.
Transcript (Including UTRs)
   Position: hg19 chr20:31,030,862-31,172,875 Size: 142,014 Total Exon Count: 11 Strand: -
Coding Region
   Position: hg19 chr20:31,035,399-31,172,692 Size: 137,294 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated: 2013-06-15

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:31,030,862-31,172,875)mRNA (may differ from genome)Protein (680 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
BioGPSCGAPEnsemblEntrez GeneExonPrimerGeneCards
H-INVHGNCHPRDLynxMGIneXtProt
PubMedStanford SOURCEUniProtKB

-  Comments and Description Text from UniProtKB
  ID: CT112_HUMAN
DESCRIPTION: RecName: Full=Uncharacterized protein C20orf112;

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 13.04 RPKM in Testis
Total median expression: 209.73 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -104.90183-0.573 Picture PostScript Text
3' UTR -1580.604537-0.348 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026746 - UPF_C20orf112

ModBase Predicted Comparative 3D Structure on Q96MY1
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologGenome BrowserGenome BrowserNo orthologNo ortholog
Gene Details  Gene Details  
Gene Sorter  Gene Sorter  
  EnsemblFlyBase  
  Protein SequenceProtein Sequence  
  AlignmentAlignment  

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Cellular Component:
GO:0005654 nucleoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK056286 - Homo sapiens cDNA FLJ31724 fis, clone NT2RI2006703, moderately similar to Homo sapiens nolp mRNA.
BC038088 - Homo sapiens, clone IMAGE:5169312, mRNA.
AK097804 - Homo sapiens cDNA FLJ40485 fis, clone TESTI2043857, moderately similar to Homo sapiens nolp mRNA.
AL122043 - Homo sapiens mRNA; cDNA DKFZp566G1424 (from clone DKFZp566G1424).
AL834520 - Homo sapiens mRNA; cDNA DKFZp434O128 (from clone DKFZp434O128).
JD098540 - Sequence 79564 from Patent EP1572962.
JD345100 - Sequence 326124 from Patent EP1572962.
JD520685 - Sequence 501709 from Patent EP1572962.
JD535204 - Sequence 516228 from Patent EP1572962.
JD565358 - Sequence 546382 from Patent EP1572962.
JD174097 - Sequence 155121 from Patent EP1572962.
JD020345 - Sequence 1369 from Patent EP1572962.
JD432769 - Sequence 413793 from Patent EP1572962.
JD453254 - Sequence 434278 from Patent EP1572962.
JD199147 - Sequence 180171 from Patent EP1572962.
JD272292 - Sequence 253316 from Patent EP1572962.
JD553500 - Sequence 534524 from Patent EP1572962.
JD285889 - Sequence 266913 from Patent EP1572962.
JD546062 - Sequence 527086 from Patent EP1572962.
JD528481 - Sequence 509505 from Patent EP1572962.
JD452806 - Sequence 433830 from Patent EP1572962.
JD414694 - Sequence 395718 from Patent EP1572962.
JD066025 - Sequence 47049 from Patent EP1572962.
JD058655 - Sequence 39679 from Patent EP1572962.
JD307706 - Sequence 288730 from Patent EP1572962.
JD130572 - Sequence 111596 from Patent EP1572962.
JD254154 - Sequence 235178 from Patent EP1572962.
JD288352 - Sequence 269376 from Patent EP1572962.
JD118903 - Sequence 99927 from Patent EP1572962.
JD549353 - Sequence 530377 from Patent EP1572962.
JD365914 - Sequence 346938 from Patent EP1572962.
JD539215 - Sequence 520239 from Patent EP1572962.
JD560416 - Sequence 541440 from Patent EP1572962.
JD307653 - Sequence 288677 from Patent EP1572962.
JD061444 - Sequence 42468 from Patent EP1572962.
JD506449 - Sequence 487473 from Patent EP1572962.
JD049969 - Sequence 30993 from Patent EP1572962.
JD322804 - Sequence 303828 from Patent EP1572962.
JD097340 - Sequence 78364 from Patent EP1572962.
JD104208 - Sequence 85232 from Patent EP1572962.
JD251990 - Sequence 233014 from Patent EP1572962.
JD099690 - Sequence 80714 from Patent EP1572962.
JD487200 - Sequence 468224 from Patent EP1572962.
JD517063 - Sequence 498087 from Patent EP1572962.
JD054533 - Sequence 35557 from Patent EP1572962.
JD257867 - Sequence 238891 from Patent EP1572962.
JD497206 - Sequence 478230 from Patent EP1572962.
JD422620 - Sequence 403644 from Patent EP1572962.
JD233945 - Sequence 214969 from Patent EP1572962.
JD497205 - Sequence 478229 from Patent EP1572962.
JD537509 - Sequence 518533 from Patent EP1572962.
JD535336 - Sequence 516360 from Patent EP1572962.
JD163456 - Sequence 144480 from Patent EP1572962.
JD415481 - Sequence 396505 from Patent EP1572962.
JD521074 - Sequence 502098 from Patent EP1572962.
JD142878 - Sequence 123902 from Patent EP1572962.
JD123910 - Sequence 104934 from Patent EP1572962.
JD131680 - Sequence 112704 from Patent EP1572962.
JD183792 - Sequence 164816 from Patent EP1572962.
JD038700 - Sequence 19724 from Patent EP1572962.
JD066144 - Sequence 47168 from Patent EP1572962.
JD401079 - Sequence 382103 from Patent EP1572962.
JD388082 - Sequence 369106 from Patent EP1572962.
JD129839 - Sequence 110863 from Patent EP1572962.
JD431640 - Sequence 412664 from Patent EP1572962.
JD475187 - Sequence 456211 from Patent EP1572962.
JD526783 - Sequence 507807 from Patent EP1572962.
JD518224 - Sequence 499248 from Patent EP1572962.
JD126951 - Sequence 107975 from Patent EP1572962.
JD535397 - Sequence 516421 from Patent EP1572962.
JD319157 - Sequence 300181 from Patent EP1572962.
JD040901 - Sequence 21925 from Patent EP1572962.
JD503574 - Sequence 484598 from Patent EP1572962.
JD367585 - Sequence 348609 from Patent EP1572962.
JD410501 - Sequence 391525 from Patent EP1572962.
JD130055 - Sequence 111079 from Patent EP1572962.
JD547249 - Sequence 528273 from Patent EP1572962.
JD223534 - Sequence 204558 from Patent EP1572962.
JD421180 - Sequence 402204 from Patent EP1572962.
JD491359 - Sequence 472383 from Patent EP1572962.
JD281161 - Sequence 262185 from Patent EP1572962.
JD452771 - Sequence 433795 from Patent EP1572962.
JD068584 - Sequence 49608 from Patent EP1572962.
JD437667 - Sequence 418691 from Patent EP1572962.
JD469878 - Sequence 450902 from Patent EP1572962.
JD508348 - Sequence 489372 from Patent EP1572962.
JD470139 - Sequence 451163 from Patent EP1572962.
JD369690 - Sequence 350714 from Patent EP1572962.
BC065370 - Homo sapiens chromosome 20 open reading frame 112, mRNA (cDNA clone MGC:71176 IMAGE:6261963), complete cds.
JD134487 - Sequence 115511 from Patent EP1572962.
HQ448464 - Synthetic construct Homo sapiens clone IMAGE:100071893; CCSB013742_03 chromosome 20 open reading frame 112 (C20orf112) gene, encodes complete protein.
JD253621 - Sequence 234645 from Patent EP1572962.
JD483276 - Sequence 464300 from Patent EP1572962.
JD057961 - Sequence 38985 from Patent EP1572962.
JD559943 - Sequence 540967 from Patent EP1572962.
JD379085 - Sequence 360109 from Patent EP1572962.
JD547100 - Sequence 528124 from Patent EP1572962.
JD139941 - Sequence 120965 from Patent EP1572962.
JD192235 - Sequence 173259 from Patent EP1572962.
CU688048 - Synthetic construct Homo sapiens gateway clone IMAGE:100022477 5' read C20orf112 mRNA.
BC023657 - Homo sapiens hypothetical protein LOC284804, mRNA (cDNA clone IMAGE:4761759), partial cds.
BC065483 - Homo sapiens hypothetical protein LOC284804, mRNA (cDNA clone IMAGE:6340033), partial cds.
JD406774 - Sequence 387798 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: C20orf113, CT112_HUMAN, NM_001256798, NP_001243727, Q5JYB7, Q6P0Y4, Q96MY1, Q9BR34, Q9NQF6, uc002wxu.4
UCSC ID: uc031rss.1
RefSeq Accession: NM_001256798
Protein: Q96MY1 (aka CT112_HUMAN or CTB2_HUMAN)

-  Gene Model Information
 
category: coding nonsense-mediated-decay: no RNA accession: NM_001256798.1
exon count: 11CDS single in 3' UTR: no RNA size: 6781
ORF size: 2043CDS single in intron: no Alignment % ID: 100.00
txCdsPredict score: 4286.00frame shift in genome: no % Coverage: 99.73
has start codon: yes stop codon in genome: no # of Alignments: 1
has end codon: yes retained intron: no # AT/AC introns 0
selenocysteine: no end bleed into intron: 0# strange splices: 0
Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.