Public Sessions
 

Sessions allow users to save snapshots of the Genome Browser and its current configuration, including displayed tracks, position, and custom track data. The Public Sessions tool allows users to easily share those sessions that they deem interesting with the rest of the world's researchers. You can add your own sessions to this list by checking the appropriate box on the Session Management page.

See the Sessions User's Guide for more information.

Sort by:

Screenshot Session Properties Creation Date Use Count
Screenshot not available
Click Here to view
Description: Humans and gorilla.
Author: bangqa
Session Name: hg38_ils1
Genome Assembly: hg38
Creation Date: 2024-03-12
Views: 5
1710169200 5
Screenshot not available
Click Here to view
Description: bonobos & orangutan don't have, humans, chimpanzees, and gorilla do.
Author: bangqa
Session Name: hg38_ils
Genome Assembly: hg38
Creation Date: 2024-03-12
Views: 4
1710169200 4
Screenshot not available
Click Here to view
Description: The pattern of genomic differences in the SRY gene reflects the phylogeny of the great apes.
Author: bangqa
Session Name: hg38_sry
Genome Assembly: hg38
Creation Date: 2024-03-12
Views: 4
1710169200 4
Description: refTSS coordinates on mouse mm39 genome. More details: https://reftss.riken.jp
Author: MasakiM
Session Name: refTSS on mm39
Genome Assembly: mm39
Creation Date: 2024-01-05
Views: 49
1704380400 49
Description: hemoglobin HBB is a variant of HB which is not very common in populations. HBA is common in all peoples. HBB expresses in white blood cells .
Author: RAJINDERGOLEE
Session Name: hg19-_hemoglobin
Genome Assembly: hg19
Creation Date: 2023-10-08
Views: 39
1696690800 39
Description: refTSS coordinates on human hg38 genome. More details: https://reftss.riken.jp
Author: MasakiM
Session Name: refTSS4 on hg38
Genome Assembly: hg38
Creation Date: 2023-07-03
Views: 114
1688310000 114
Description: The genes HBB and HBD are both expressed in red blood cells , but HBB is also expressed in many other tissues , whereas HBD is expressed in red cells almost exclusively.
Author: yrajat7900
Session Name: hg19_hemoglobin
Genome Assembly: hg19
Creation Date: 2022-02-06
Views: 150
1644073200 150
Description:
Author: bzswmu
Session Name: pf47_part2_new
Genome Assembly: hub_132305_pf47
Creation Date: 2022-01-28
Views: 280
1643295600 280
Description:
Author: bzswmu
Session Name: pf47_part1
Genome Assembly: hub_132305_pf47
Creation Date: 2021-12-16
Views: 646
1639580400 646
Description:
Author: zahra jafari
Session Name: homwork
Genome Assembly: hg19
Creation Date: 2021-12-03
Views: 157
1638457200 157
Description:
Author: BowenYang
Session Name: part 4
Genome Assembly: hg19
Creation Date: 2021-08-31
Views: 289
1630335600 289
Screenshot not available
Click Here to view
Description:
Author: zzhmark
Session Name: germlayer_enh
Genome Assembly: mm10
Creation Date: 2021-03-14
Views: 367
1615647600 367
Screenshot not available
Click Here to view
Description:
Author: chenchuanhuizi
Session Name: TP53
Genome Assembly: hg38
Creation Date: 2021-03-05
Views: 385
1614870000 385
Screenshot not available
Click Here to view
Description:
Author: Aragon
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2021-02-12
Views: 364
1613055600 364
Screenshot not available
Click Here to view
Description:
Author: Aragon
Session Name: hg19_joydip
Genome Assembly: hg19
Creation Date: 2021-02-12
Views: 396
1613055600 396
Screenshot not available
Click Here to view
Description:
Author: SAYANTANI SANTRA
Session Name: hg19 8-2-21
Genome Assembly: hg19
Creation Date: 2021-02-08
Views: 351
1612710000 351
Screenshot not available
Click Here to view
Description:
Author: akhileshwar_namani@yahoo.co.in
Session Name: TXA549CHIPSEQ
Genome Assembly: hg19
Creation Date: 2021-01-17
Views: 352
1610809200 352
Screenshot not available
Click Here to view
Description:
Author: Shadab79
Session Name: shadab
Genome Assembly: hg19
Creation Date: 2020-07-20
Views: 455
1595170800 455
Description:
Author: lkh
Session Name: pol2_subunits
Genome Assembly: mm10
Creation Date: 2019-11-21
Views: 1157
1574262000 1157
Description:
Author: jieMM
Session Name: hg38_FINAL
Genome Assembly: hg38
Creation Date: 2019-11-05
Views: 881
1572879600 881
Description: The latest version of imomdb data, uploaded on April 2020
Author: imomdb
Session Name: imomdb_v0
Genome Assembly: hg19
Creation Date: 2020-04-15
Views: 447
1586876400 447
Description:
Author: QAtester2
Session Name: hg18_SNP
Genome Assembly: hg18
Creation Date: 2019-08-01
Views: 543
1564585200 543
Description:
Author: brianlee
Session Name: hg38_test
Genome Assembly: hg38
Creation Date: 2019-06-11
Views: 531
1560178800 531
Description:
Author: geneHunter23
Session Name: hg19Default
Genome Assembly: hg19
Creation Date: 2019-06-11
Views: 550
1560178800 550
Description:
Author: Lou
Session Name: bosTau9_Interesting
Genome Assembly: bosTau9
Creation Date: 2019-06-08
Views: 621
1559919600 621
Description: This is an interact track type using GeneHancer data.
Author: brianlee
Session Name: InteractSession
Genome Assembly: hg38
Creation Date: 2019-06-07
Views: 560
1559833200 560
Screenshot not available
Click Here to view
Description:
Author: XinDong
Session Name: TAD_with_Hsitone_and_RNAseq
Genome Assembly: hg38
Creation Date: 2019-03-25
Views: 525
1553439600 525
Screenshot not available
Click Here to view
Description:
Author: pdl.tyh
Session Name: hg19_PDL CNV analysis
Genome Assembly: hg19
Creation Date: 2018-12-29
Views: 1117
1546009200 1117
Screenshot not available
Click Here to view
Description:
Author: QAtester3
Session Name: genomeAsia
Genome Assembly: hub_80308_linHum0
Creation Date: 2018-12-22
Views: 510
1545404400 510
Screenshot not available
Click Here to view
Description:
Author: malaysia2018
Session Name: hg19_UPD2
Genome Assembly: hg19
Creation Date: 2018-08-29
Views: 539
1535468400 539
Screenshot not available
Click Here to view
Description:
Author: malaysia2018
Session Name: hg19_UPD
Genome Assembly: hg19
Creation Date: 2018-08-29
Views: 1264
1535468400 1264
Screenshot not available
Click Here to view
Description:
Author: maskyjg
Session Name: hg19_TRPS1_ChIPSeq
Genome Assembly: hg38
Creation Date: 2018-08-08
Views: 474
1533654000 474
Description:
Author: lipan
Session Name: hg38_dynamics
Genome Assembly: hg38
Creation Date: 2018-07-13
Views: 1933
1531407600 1933
Description:
Author: lipan
Session Name: mm10_dynamics
Genome Assembly: mm10
Creation Date: 2018-07-13
Views: 1095
1531407600 1095
Screenshot not available
Click Here to view
Description:
Author: Lin Xia
Session Name: hg19 HEK293T
Genome Assembly: hg19
Creation Date: 2018-05-10
Views: 667
1525878000 667
Screenshot not available
Click Here to view
Description:
Author: cehnouz
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2017-08-25
Views: 553
1503586800 553
Screenshot not available
Click Here to view
Description: We have recently released a file type called "longTabix" which supports inter & intra-chromosomal interactions by drawing an "arc" among paired regions in the UCSC Genome Browser. Note the first track at the top of the display, you can click on any of the "arcs" or interaction connections to see details such as ID and score. Credit goes to Cath Tyner for the creation of this session. Link to the original question: https://groups.google.com/a/soe.ucsc.edu/d/msg/genome/kE2pIZUvfnA/jfopk7pFAQAJ
Author: PublicSessions
Session Name: Viewing inter- & intra-chromosomal interactions
Genome Assembly: hg19
Creation Date: 2017-03-22
Views: 502
1490108400 502
Screenshot not available
Click Here to view
Description:
Author: vivekgopalanmedgenome
Session Name: MSH3_DHFR_region2
Genome Assembly: hg19
Creation Date: 2016-09-21
Views: 546
1474383600 546
Screenshot not available
Click Here to view
Description:
Author: vivekgopalanmedgenome
Session Name: MSH3_DHFR_region1
Genome Assembly: hg19
Creation Date: 2016-09-21
Views: 562
1474383600 562
Screenshot not available
Click Here to view
Description:
Author: vivekgopalanmedgenome
Session Name: MSH3_DHFR_region
Genome Assembly: hg19
Creation Date: 2016-09-21
Views: 504
1474383600 504
Description: This session demonstrates the GTEx track on the human assembly hg19. The GTEx track shows data from the NIH Genotype-Tissue Expression project and displays expression data for each gene, based on GENCODE gene models, from 51 tissues collected from 570 individual. This session also demonstrates the gene-only mode of the multi-region feature, which removes intergenic regions from the display.
Author: mspeir
Session Name: hg19_gtexAnnouncement
Genome Assembly: hg19
Creation Date: 2016-06-24
Views: 527
1466694000 527
Description: Session highlights a mouse-specific repeat on chromosome 12. You can see the gap in the 60-way vertebrate alignment surrounding the repeat, which is highlighted in light blue. The repeat is classified as a LINE and is part of the L1 family of repeats. Additionally, on the far right-hand side of the display, you can see the retrotransposed Bf3 gene.
Author: mspeir
Session Name: mm10_MouseSpecificRepeat_plus_RetroposedGene
Genome Assembly: mm10
Creation Date: 2016-05-24
Views: 509
1464015600 509
Description: Session displays the promoter region of DARC on human assembly hg19 including UCSC Genes, dbSNP 146 (Common subset) and the Publications track showing sequences and SNPs text-mined from PubMed Central and Elsevier. Adapted from Figure 1 in Meyer, et al. The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res. 2013 Jan;41(Database issue):D64-9: http://nar.oxfordjournals.org/content/41/D1/D64.long.
Author: mspeir
Session Name: hg19_NAR_2013_Fig1
Genome Assembly: hg19
Creation Date: 2016-05-24
Views: 542
1464015600 542
Description: Session displays the dyskeratosis congenita 1 (DKC1) gene using the exon-only multi-region mode in the human assembly hg38. Alongside the gene structure, tracks displaying dbSNP "flagged" variants, OMIM clinical variants, ENCODE transcription levels from 9 cell lines, a 100-way vertebrate alignment (only a subset of species displayed), and conservation scores calculated using phyloP across this 100-way alignment.
Author: mspeir
Session Name: hg38_DKC1_SNPs_Cons_Transcription
Genome Assembly: hg38
Creation Date: 2016-05-24
Views: 552
1464015600 552
Description: Session displays the promoter region and transcription start of IRF1 on human assembly hg19 showing UCSC Genes, 1000 Genomes Phase 3 Integrated Variant Calls in the haplotype sorting VCF display mode, histone mark H3K27Ac binding in overlays of 7 ENCODE cell lines and PhyloP conservation scores from alignments of 100 vertebrates. Adapted from Figure 2 in Meyer, et al. The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res. 2013 Jan;41(Database issue):D64-9: http://nar.oxfordjournals.org/content/41/D1/D64.long.
Author: mspeir
Session Name: hg19_NAR_2013_Fig2
Genome Assembly: hg19
Creation Date: 2016-05-24
Views: 636
1464015600 636
Screenshot not available
Click Here to view
Description:
Author: lijin
Session Name: session6 lung specific enhancer example
Genome Assembly: hg19
Creation Date: 2016-04-29
Views: 479
1461855600 479
Screenshot not available
Click Here to view
Description:
Author: lijin
Session Name: session2 four types
Genome Assembly: hg19
Creation Date: 2016-04-17
Views: 485
1460818800 485
Screenshot not available
Click Here to view
Description:
Author: lijin
Session Name: test
Genome Assembly: hg19
Creation Date: 2016-04-16
Views: 515
1460732400 515
Screenshot not available
Click Here to view
Description:
Author: lijin
Session Name: session5 whole genome methy
Genome Assembly: hg19
Creation Date: 2016-04-29
Views: 488
1461855600 488
Description:
Author: mspeir
Session Name: hg19_CAGrepeat
Genome Assembly: hg19
Creation Date: 2016-06-21
Views: 501
1466434800 501
Description:
Author: mspeir
Session Name: hg19_wobble
Genome Assembly: hg19
Creation Date: 2016-06-21
Views: 538
1466434800 538
Description: This session is demonstrating the exon-only mode of the multi-region feature. The exon-only mode uses the GENCODE v22 track to slice up the normal display and remove both intronic and intergenic regions from the display. Only those regions covered by exons, both coding and noncoding, are left in the display. For more on the multi-region display see the user guide: http://genome.ucsc.edu/goldenPath/help/multiRegionHelp.html.
Author: mspeir
Session Name: hg38_exonOnlyExample
Genome Assembly: hg38
Creation Date: 2016-06-21
Views: 486
1466434800 486
Screenshot not available
Click Here to view
Description:
Author: lijin
Session Name: session1 Liver 97L exp meth
Genome Assembly: hg19
Creation Date: 2016-04-17
Views: 489
1460818800 489
Screenshot not available
Click Here to view
Description:
Author: lijin
Session Name: session4 plus h3k27ac density andpeaks
Genome Assembly: hg19
Creation Date: 2016-04-28
Views: 492
1461769200 492
Screenshot not available
Click Here to view
Description:
Author: lijin
Session Name: session3 plus h3k27ac
Genome Assembly: hg19
Creation Date: 2016-04-28
Views: 593
1461769200 593
Screenshot not available
Click Here to view
Description:
Author: ARKLAB_iwoo
Session Name: arklab_hg19_hemo_demonstration
Genome Assembly: hg19
Creation Date: 2017-03-31
Views: 592
1490886000 592
Description: This session shows a search of primers. A researcher had an issue building PCR primers and Browser staff discovered that a desired reverse primer falls into an area of repeats.  The original primer at 20 bases was near the limit of BLAT's sensitivity. With such short sequences, if BLAT has an over-used tile, a section of the query used to match and trigger an alignment, the algorithm will not be able to seed and extend an original BLAT hit in an area of repeats, which was what was likely happening to the reverse primer sequence in this session. In the session a larger BLAT query will result in a hit. Since primers are typically chosen from unique locations, Browser staff suggested it might be best to avoid a repeat-region, and noted that the nearby chr13:50,593,214-50,593,267 section appears to not have any repeats.
Author: brianlee
Session Name: Primers Blat Search
Genome Assembly: hg19
Creation Date: 2013-07-23
Views: 86
1374505200 86
Description: This session displays a region of the LHX6 gene that highlights a selection of the new tracks added in the previous year for the hg38/GRCh38 human assembly. The tracks shown in this display (from top to bottom) include GENCODE Genes V22, transcription levels assayed across 9 ENCODE cell lines, DNase hypersensitive regions based on data from 95 ENCODE cell lines, genome-wide conservation scores calculated using phastCons, a multiple genome alignment created using Lastz and Multiz, and pathogenic CNVs from the ClinGen database. Adapted from Figure 1 in Speir, et al. The UCSC Genome Browser database: 2016 update. Nucleic Acids Res. 2016 Jan 4;44(D1):D717-25: http://nar.oxfordjournals.org/content/44/D1/D717.full
Author: mspeir
Session Name: hg38_NAR_2016_Fig1
Genome Assembly: hg38
Creation Date: 2015-08-11
Views: 539
1439218800 539