Multiz Alignments of 100 Vertebrates
 

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Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 496 in window, 111856644 - 111856701, 58 bps 
B D                   Human  tctcctgcctcagcctcccgagtagctgggactacaggctcccaccaccacgcccggc
B D                 Gorilla  tctcccaactcagcctccccagtagctgggactacaggtgtgtgtcaccatgcccagc
B D               Orangutan  tctcctgcctcagcctcccgagtagctgggactacaggctc------ccatgcctggc
B D                  Gibbon  tctcctgcctcagcctcccgagtagctgggactacatgctcccgccaccacgcctggc
B D     Crab-eating macaque  tctcctgcctcagcctcccgagtagctgggaccacagacgcccgccaccacgcccggc
B D                  Baboon  tctcctgcctcagcctcccgagtagctgggaccacaggcgcccgccaccacgcccggc
B D            Green monkey  tctcctgcctcagccttgtgagtagctgggaccacaggcgcccgccaccacgcccagc
B D                Marmoset  tctcctgcctcagcctcctgagtagctgggattacaggcatgcgccaccgtgcccggc
            Golden hamster  ==========================================================
    Lesser Egyptian jerboa  ==========================================================
B D                     Rat  ==========================================================
              Prairie vole  ==========================================================
B D                   Mouse  ==========================================================
B D                    Pika  ==========================================================
B D                   Shrew  ==========================================================
B D              Guinea pig  ==========================================================
B D                  Rabbit  ==========================================================
                  Aardvark  ==========================================================
B D                  Rhesus  ==========================================================
          Cape golden mole  ==========================================================
B D                     Pig  ==========================================================
B D                 Megabat  ==========================================================
B D                 Dolphin  ==========================================================
                Chinchilla  ==========================================================
B D          Naked mole-rat  ==========================================================
          Brush-tailed rat  ==========================================================
       Cape elephant shrew  ==========================================================
        Chinese tree shrew  ==========================================================
B D                 Manatee  ==========================================================
B D                Elephant  ==========================================================
B D         Chinese hamster  ==========================================================
B D                  Tenrec  ==========================================================
B D                     Cat  ==========================================================
B D                Bushbaby  ==========================================================
              Weddell seal  ==========================================================
B D                 Ferret   ==========================================================
             Domestic goat  ==========================================================
B D                   Sheep  ==========================================================
          Tibetan antelope  ==========================================================
           Star-nosed mole  ==========================================================
            Bactrian camel  ==========================================================
B D                  Alpaca  ----------------------------------------------------------
             Big brown bat  ----------------------------------------------------------
            Pacific walrus  ==========================================================
B D                   Panda  ==========================================================
B D                     Cow  ==========================================================
              Killer whale  ==========================================================
B D                     Dog  ==========================================================
          Black flying-fox  ==========================================================
B D        White rhinoceros  ==========================================================
B D                   Horse  ==========================================================
B D                Squirrel  ==========================================================
      David's myotis (bat)  ----------------------------------------------------------
B D                Microbat  ==========================================================
B D         Squirrel monkey  ==========================================================
B D               Armadillo  ==========================================================
B D                   Chimp  ==========================================================

Alignment block 2 of 496 in window, 111856702 - 111856717, 16 bps 
B D                   Human  t-----------aatttttgtattttt
B D                 Gorilla  taattaaaataaaatttttgtgtgt--
B D               Orangutan  t-----------aatttttgtattttt
B D                  Gibbon  t-----------aatttttgtattttt
B D     Crab-eating macaque  t-----------aagttttgtattttt
B D                  Baboon  t-----------aagttttgtattttt
B D            Green monkey  t-----------aagttttgtattttt
            Golden hamster  ===========================
    Lesser Egyptian jerboa  ===========================
B D                     Rat  ===========================
              Prairie vole  ===========================
B D                   Mouse  ===========================
B D                    Pika  ===========================
B D                   Shrew  ===========================
B D              Guinea pig  ===========================
B D                  Rabbit  ===========================
                  Aardvark  ===========================
B D                  Rhesus  ===========================
          Cape golden mole  ===========================
B D                     Pig  ===========================
B D                 Megabat  ===========================
B D                 Dolphin  ===========================
                Chinchilla  ===========================
B D          Naked mole-rat  ===========================
          Brush-tailed rat  ===========================
       Cape elephant shrew  ===========================
        Chinese tree shrew  ===========================
B D                 Manatee  ===========================
B D                Elephant  ===========================
B D         Chinese hamster  ===========================
B D                  Tenrec  ===========================
B D                     Cat  ===========================
B D                Bushbaby  ===========================
              Weddell seal  ===========================
B D                 Ferret   ===========================
             Domestic goat  ===========================
B D                   Sheep  ===========================
          Tibetan antelope  ===========================
           Star-nosed mole  ===========================
            Bactrian camel  ===========================
B D                  Alpaca  ---------------------------
             Big brown bat  ---------------------------
            Pacific walrus  ===========================
B D                   Panda  ===========================
B D                     Cow  ===========================
              Killer whale  ===========================
B D                     Dog  ===========================
          Black flying-fox  ===========================
B D        White rhinoceros  ===========================
B D                   Horse  ===========================
B D                Squirrel  ===========================
      David's myotis (bat)  ---------------------------
B D                Microbat  ===========================
B D         Squirrel monkey  ===========================
B D                Marmoset  ---------------------------
B D               Armadillo  ===========================
B D                   Chimp  ===========================

Alignment block 3 of 496 in window, 111856718 - 111856827, 110 bps 
B D                   Human  agtagagacggggtttcaccgtgttag-ccaggatggtctcgatctcctgacctt--gtgatccgcccac
B D                 Gorilla  -gtgaaggcagg---tctccctaagagcccaggctgattttgaactcctggactcaagtgattctcctgc
B D               Orangutan  agtagagacggggtttcaccgtgttag-ccaccatggtctcgatctcctgacctt--gtgatccgcccac
B D                  Gibbon  agtagagacggggtttcaccgtgttag-ccaggatggtcttgatctcctgacctt--gtgatccgcccac
B D     Crab-eating macaque  agtagagacagggtttcaccgtgttag-ccaggatagtctcgatttcctgacctt--gtgatccgcccgc
B D                  Baboon  agtagagacggggtttcaccgtgttag-ccaggatggtctcgatttcctgacctt--gtgatccgcccgc
B D            Green monkey  agtagagacagggtttcaccgtgttag-ccaggatggtctcgatttcctgacctt--gtgatccgcccgc
B D         Squirrel monkey  aataaagatagggtttcaccatgatgg-ccaggctggtgttgaactcctgatctcaggtgatccacccac
            Golden hamster  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
B D                     Rat  ======================================================================
              Prairie vole  ======================================================================
B D                   Mouse  ======================================================================
B D                    Pika  ======================================================================
B D                   Shrew  ======================================================================
B D              Guinea pig  ======================================================================
B D                  Rabbit  ======================================================================
                  Aardvark  ======================================================================
B D                  Rhesus  ======================================================================
          Cape golden mole  ======================================================================
B D                     Pig  ======================================================================
B D                 Megabat  ======================================================================
B D                 Dolphin  ======================================================================
                Chinchilla  ======================================================================
B D          Naked mole-rat  ======================================================================
          Brush-tailed rat  ======================================================================
       Cape elephant shrew  ======================================================================
        Chinese tree shrew  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
B D         Chinese hamster  ======================================================================
B D                  Tenrec  ======================================================================
B D                     Cat  ======================================================================
B D                Bushbaby  ======================================================================
              Weddell seal  ======================================================================
B D                 Ferret   ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
           Star-nosed mole  ======================================================================
            Bactrian camel  ======================================================================
B D                  Alpaca  ----------------------------------------------------------------------
             Big brown bat  ----------------------------------------------------------------------
            Pacific walrus  ======================================================================
B D                   Panda  ======================================================================
B D                     Cow  ======================================================================
              Killer whale  ======================================================================
B D                     Dog  ======================================================================
          Black flying-fox  ======================================================================
B D        White rhinoceros  ======================================================================
B D                   Horse  ======================================================================
B D                Squirrel  ======================================================================
      David's myotis (bat)  ----------------------------------------------------------------------
B D                Microbat  ======================================================================
B D                Marmoset  ----------------------------------------------------------------------
B D               Armadillo  ======================================================================
B D                   Chimp  ======================================================================

                      Human  cttggcctcccaaagtgctgggattacaggcgtgagccaccgc
                    Gorilla  tttggcctccaaaagtgctgggattacaggtgtaagccactgc
                  Orangutan  cttggcctcccaaagtgctgggattacaggcgtgagccaccgc
                     Gibbon  cttggcctcccaaagtgctgggattacaggcgtgagccaccac
        Crab-eating macaque  ctcggcctcccaaagtgctgggattacaggcatgagccacggc
                     Baboon  ctcggcctcccaaagtgctgggattacaggcacgagccaccgc
               Green monkey  ctcggcctcccaaagtgctgggattacaggcatgagccaccgc
            Squirrel monkey  ctcggcctcccaaaatgctaggattacaggcgtaagccaccat
             Golden hamster  ===========================================
     Lesser Egyptian jerboa  ===========================================
                        Rat  ===========================================
               Prairie vole  ===========================================
                      Mouse  ===========================================
                       Pika  ===========================================
                      Shrew  ===========================================
                 Guinea pig  ===========================================
                     Rabbit  ===========================================
                   Aardvark  ===========================================
                     Rhesus  ===========================================
           Cape golden mole  ===========================================
                        Pig  ===========================================
                    Megabat  ===========================================
                    Dolphin  ===========================================
                 Chinchilla  ===========================================
             Naked mole-rat  ===========================================
           Brush-tailed rat  ===========================================
        Cape elephant shrew  ===========================================
         Chinese tree shrew  ===========================================
                    Manatee  ===========================================
                   Elephant  ===========================================
            Chinese hamster  ===========================================
                     Tenrec  ===========================================
                        Cat  ===========================================
                   Bushbaby  ===========================================
               Weddell seal  ===========================================
                    Ferret   ===========================================
              Domestic goat  ===========================================
                      Sheep  ===========================================
           Tibetan antelope  ===========================================
            Star-nosed mole  ===========================================
             Bactrian camel  ===========================================
                     Alpaca  -------------------------------------------
              Big brown bat  -------------------------------------------
             Pacific walrus  ===========================================
                      Panda  ===========================================
                        Cow  ===========================================
               Killer whale  ===========================================
                        Dog  ===========================================
           Black flying-fox  ===========================================
           White rhinoceros  ===========================================
                      Horse  ===========================================
                   Squirrel  ===========================================
       David's myotis (bat)  -------------------------------------------
                   Microbat  ===========================================
                   Marmoset  -------------------------------------------
                  Armadillo  ===========================================
                      Chimp  ===========================================

Inserts between block 3 and 4 in window
B D                Gorilla 2675bp

Alignment block 4 of 496 in window, 111856828 - 111856835, 8 bps 
B D                   Human  gcccggcc
B D               Orangutan  gcccggcc
B D                  Gibbon  gcccggcc
B D     Crab-eating macaque  gcccggcc
B D                  Baboon  gcccggcc
B D            Green monkey  gcccggcc
B D         Squirrel monkey  gcctagcc
            Golden hamster  ========
    Lesser Egyptian jerboa  ========
B D                     Rat  ========
              Prairie vole  ========
B D                   Mouse  ========
B D                    Pika  ========
B D                   Shrew  ========
B D              Guinea pig  ========
B D                  Rabbit  ========
                  Aardvark  ========
B D                  Rhesus  ========
          Cape golden mole  ========
B D                     Pig  ========
B D                 Megabat  ========
B D                 Dolphin  ========
                Chinchilla  ========
B D          Naked mole-rat  ========
          Brush-tailed rat  ========
       Cape elephant shrew  ========
        Chinese tree shrew  ========
B D                 Manatee  ========
B D                Elephant  ========
B D         Chinese hamster  ========
B D                  Tenrec  ========
B D                     Cat  ========
B D                Bushbaby  ========
              Weddell seal  ========
B D                 Ferret   ========
             Domestic goat  ========
B D                   Sheep  ========
          Tibetan antelope  ========
           Star-nosed mole  ========
            Bactrian camel  ========
B D                  Alpaca  --------
             Big brown bat  --------
            Pacific walrus  ========
B D                   Panda  ========
B D                     Cow  ========
              Killer whale  ========
B D                     Dog  ========
          Black flying-fox  ========
B D        White rhinoceros  ========
B D                   Horse  ========
B D                Squirrel  ========
      David's myotis (bat)  --------
B D                Microbat  ========
B D                Marmoset  --------
B D               Armadillo  ========
B D                 Gorilla  ========
B D                   Chimp  ========

Alignment block 5 of 496 in window, 111856836 - 111856837, 2 bps 
B D                   Human  aa
B D               Orangutan  aa
B D                  Gibbon  aa
B D     Crab-eating macaque  aa
B D                  Baboon  aa
B D            Green monkey  aa
            Golden hamster  ==
    Lesser Egyptian jerboa  ==
B D                     Rat  ==
              Prairie vole  ==
B D                   Mouse  ==
B D                    Pika  ==
B D                   Shrew  ==
B D              Guinea pig  ==
B D                  Rabbit  ==
                  Aardvark  ==
B D                  Rhesus  ==
          Cape golden mole  ==
B D                     Pig  ==
B D                 Megabat  ==
B D                 Dolphin  ==
                Chinchilla  ==
B D          Naked mole-rat  ==
          Brush-tailed rat  ==
       Cape elephant shrew  ==
        Chinese tree shrew  ==
B D                 Manatee  ==
B D                Elephant  ==
B D         Chinese hamster  ==
B D                  Tenrec  ==
B D                     Cat  ==
B D                Bushbaby  ==
              Weddell seal  ==
B D                 Ferret   ==
             Domestic goat  ==
B D                   Sheep  ==
          Tibetan antelope  ==
           Star-nosed mole  ==
            Bactrian camel  ==
B D                  Alpaca  --
             Big brown bat  --
            Pacific walrus  ==
B D                   Panda  ==
B D                     Cow  ==
              Killer whale  ==
B D                     Dog  ==
          Black flying-fox  ==
B D        White rhinoceros  ==
B D                   Horse  ==
B D                Squirrel  ==
      David's myotis (bat)  --
B D                Microbat  ==
B D         Squirrel monkey  --
B D                Marmoset  --
B D               Armadillo  ==
B D                 Gorilla  ==
B D                   Chimp  ==

Alignment block 6 of 496 in window, 111856838 - 111856838, 1 bps 
B D                   Human  c
B D               Orangutan  c
B D     Crab-eating macaque  t
B D                  Baboon  t
B D            Green monkey  t
            Golden hamster  =
    Lesser Egyptian jerboa  =
B D                     Rat  =
              Prairie vole  =
B D                   Mouse  =
B D                    Pika  =
B D                   Shrew  =
B D              Guinea pig  =
B D                  Rabbit  =
                  Aardvark  =
B D                  Rhesus  =
          Cape golden mole  =
B D                     Pig  =
B D                 Megabat  =
B D                 Dolphin  =
B D                  Gibbon  -
                Chinchilla  =
B D          Naked mole-rat  =
          Brush-tailed rat  =
       Cape elephant shrew  =
        Chinese tree shrew  =
B D                 Manatee  =
B D                Elephant  =
B D         Chinese hamster  =
B D                  Tenrec  =
B D                     Cat  =
B D                Bushbaby  =
              Weddell seal  =
B D                 Ferret   =
             Domestic goat  =
B D                   Sheep  =
          Tibetan antelope  =
           Star-nosed mole  =
            Bactrian camel  =
B D                  Alpaca  -
             Big brown bat  -
            Pacific walrus  =
B D                   Panda  =
B D                     Cow  =
              Killer whale  =
B D                     Dog  =
          Black flying-fox  =
B D        White rhinoceros  =
B D                   Horse  =
B D                Squirrel  =
      David's myotis (bat)  -
B D                Microbat  =
B D         Squirrel monkey  -
B D                Marmoset  -
B D               Armadillo  =
B D                 Gorilla  =
B D                   Chimp  =

Alignment block 7 of 496 in window, 111856839 - 111856843, 5 bps 
B D                   Human  tttgc
B D               Orangutan  tttgc
            Golden hamster  =====
    Lesser Egyptian jerboa  =====
B D                     Rat  =====
              Prairie vole  =====
B D                   Mouse  =====
B D                    Pika  =====
B D                   Shrew  =====
B D              Guinea pig  =====
B D                  Rabbit  =====
                  Aardvark  =====
B D                  Baboon  -----
B D            Green monkey  -----
B D     Crab-eating macaque  -----
B D                  Rhesus  =====
          Cape golden mole  =====
B D                     Pig  =====
B D                 Megabat  =====
B D                 Dolphin  =====
B D                  Gibbon  -----
                Chinchilla  =====
B D          Naked mole-rat  =====
          Brush-tailed rat  =====
       Cape elephant shrew  =====
        Chinese tree shrew  =====
B D                 Manatee  =====
B D                Elephant  =====
B D         Chinese hamster  =====
B D                  Tenrec  =====
B D                     Cat  =====
B D                Bushbaby  =====
              Weddell seal  =====
B D                 Ferret   =====
             Domestic goat  =====
B D                   Sheep  =====
          Tibetan antelope  =====
           Star-nosed mole  =====
            Bactrian camel  =====
B D                  Alpaca  -----
             Big brown bat  -----
            Pacific walrus  =====
B D                   Panda  =====
B D                     Cow  =====
              Killer whale  =====
B D                     Dog  =====
          Black flying-fox  =====
B D        White rhinoceros  =====
B D                   Horse  =====
B D                Squirrel  =====
      David's myotis (bat)  -----
B D                Microbat  =====
B D         Squirrel monkey  -----
B D                Marmoset  -----
B D               Armadillo  =====
B D                 Gorilla  =====
B D                   Chimp  =====

Alignment block 8 of 496 in window, 111856844 - 111856854, 11 bps 
B D                   Human  ctttatttttt
B D                 Gorilla  ccttttttttt
B D               Orangutan  ccttatttttt
            Golden hamster  ===========
    Lesser Egyptian jerboa  ===========
B D                     Rat  ===========
              Prairie vole  ===========
B D                   Mouse  ===========
B D                    Pika  ===========
B D                   Shrew  ===========
B D              Guinea pig  ===========
B D                  Rabbit  ===========
                  Aardvark  ===========
B D                  Baboon  -----------
B D            Green monkey  -----------
B D     Crab-eating macaque  -----------
B D                  Rhesus  ===========
          Cape golden mole  ===========
B D                     Pig  ===========
B D                 Megabat  ===========
B D                 Dolphin  ===========
B D                  Gibbon  -----------
                Chinchilla  ===========
B D          Naked mole-rat  ===========
          Brush-tailed rat  ===========
       Cape elephant shrew  ===========
        Chinese tree shrew  ===========
B D                 Manatee  ===========
B D                Elephant  ===========
B D         Chinese hamster  ===========
B D                  Tenrec  ===========
B D                     Cat  ===========
B D                Bushbaby  ===========
              Weddell seal  ===========
B D                 Ferret   ===========
             Domestic goat  ===========
B D                   Sheep  ===========
          Tibetan antelope  ===========
           Star-nosed mole  ===========
            Bactrian camel  ===========
B D                  Alpaca  -----------
             Big brown bat  -----------
            Pacific walrus  ===========
B D                   Panda  ===========
B D                     Cow  ===========
              Killer whale  ===========
B D                     Dog  ===========
          Black flying-fox  ===========
B D        White rhinoceros  ===========
B D                   Horse  ===========
B D                Squirrel  ===========
      David's myotis (bat)  -----------
B D                Microbat  ===========
B D         Squirrel monkey  -----------
B D                Marmoset  -----------
B D               Armadillo  ===========
B D                   Chimp  ===========

Inserts between block 8 and 9 in window
B D              Orangutan 1bp

Alignment block 9 of 496 in window, 111856855 - 111856906, 52 bps 
B D                   Human  atttatttattttttttgagacggagtctcgctctgtcgcccaggctggagt
B D                 Gorilla  ttttttttttttttgtagaggtggggttttgccatgttgcccaagttggttt
            Golden hamster  ====================================================
    Lesser Egyptian jerboa  ====================================================
B D                     Rat  ====================================================
              Prairie vole  ====================================================
B D                   Mouse  ====================================================
B D                    Pika  ====================================================
B D                   Shrew  ====================================================
B D              Guinea pig  ====================================================
B D                  Rabbit  ====================================================
                  Aardvark  ====================================================
B D                  Baboon  ----------------------------------------------------
B D            Green monkey  ----------------------------------------------------
B D     Crab-eating macaque  ----------------------------------------------------
B D                  Rhesus  ====================================================
          Cape golden mole  ====================================================
B D                     Pig  ====================================================
B D                 Megabat  ====================================================
B D                 Dolphin  ====================================================
B D                  Gibbon  ----------------------------------------------------
                Chinchilla  ====================================================
B D          Naked mole-rat  ====================================================
          Brush-tailed rat  ====================================================
       Cape elephant shrew  ====================================================
        Chinese tree shrew  ====================================================
B D                 Manatee  ====================================================
B D                Elephant  ====================================================
B D         Chinese hamster  ====================================================
B D                  Tenrec  ====================================================
B D                     Cat  ====================================================
B D                Bushbaby  ====================================================
              Weddell seal  ====================================================
B D                 Ferret   ====================================================
B D               Orangutan  ====================================================
             Domestic goat  ====================================================
B D                   Sheep  ====================================================
          Tibetan antelope  ====================================================
           Star-nosed mole  ====================================================
            Bactrian camel  ====================================================
B D                  Alpaca  ----------------------------------------------------
             Big brown bat  ----------------------------------------------------
            Pacific walrus  ====================================================
B D                   Panda  ====================================================
B D                     Cow  ====================================================
              Killer whale  ====================================================
B D                     Dog  ====================================================
          Black flying-fox  ====================================================
B D        White rhinoceros  ====================================================
B D                   Horse  ====================================================
B D                Squirrel  ====================================================
      David's myotis (bat)  ----------------------------------------------------
B D                Microbat  ====================================================
B D         Squirrel monkey  ----------------------------------------------------
B D                Marmoset  ----------------------------------------------------
B D               Armadillo  ====================================================
B D                   Chimp  ====================================================

Inserts between block 9 and 10 in window
B D                Gorilla 83bp

Alignment block 10 of 496 in window, 111856907 - 111856958, 52 bps 
B D                   Human  gcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcacgcca
            Golden hamster  ====================================================
    Lesser Egyptian jerboa  ====================================================
B D                     Rat  ====================================================
              Prairie vole  ====================================================
B D                   Mouse  ====================================================
B D                    Pika  ====================================================
B D                   Shrew  ====================================================
B D              Guinea pig  ====================================================
B D                  Rabbit  ====================================================
                  Aardvark  ====================================================
B D                  Baboon  ----------------------------------------------------
B D            Green monkey  ----------------------------------------------------
B D     Crab-eating macaque  ----------------------------------------------------
B D                  Rhesus  ====================================================
          Cape golden mole  ====================================================
B D                     Pig  ====================================================
B D                 Megabat  ====================================================
B D                 Dolphin  ====================================================
B D                  Gibbon  ----------------------------------------------------
                Chinchilla  ====================================================
B D          Naked mole-rat  ====================================================
          Brush-tailed rat  ====================================================
       Cape elephant shrew  ====================================================
        Chinese tree shrew  ====================================================
B D                 Manatee  ====================================================
B D                Elephant  ====================================================
B D         Chinese hamster  ====================================================
B D                  Tenrec  ====================================================
B D                     Cat  ====================================================
B D                Bushbaby  ====================================================
              Weddell seal  ====================================================
B D                 Ferret   ====================================================
B D               Orangutan  ====================================================
             Domestic goat  ====================================================
B D                   Sheep  ====================================================
          Tibetan antelope  ====================================================
           Star-nosed mole  ====================================================
            Bactrian camel  ====================================================
B D                  Alpaca  ----------------------------------------------------
             Big brown bat  ----------------------------------------------------
            Pacific walrus  ====================================================
B D                   Panda  ====================================================
B D                     Cow  ====================================================
              Killer whale  ====================================================
B D                     Dog  ====================================================
          Black flying-fox  ====================================================
B D        White rhinoceros  ====================================================
B D                   Horse  ====================================================
B D                Squirrel  ====================================================
      David's myotis (bat)  ----------------------------------------------------
B D                Microbat  ====================================================
B D         Squirrel monkey  ----------------------------------------------------
B D                Marmoset  ----------------------------------------------------
B D               Armadillo  ====================================================
B D                 Gorilla  ====================================================
B D                   Chimp  ====================================================

Alignment block 11 of 496 in window, 111856959 - 111856962, 4 bps 
B D                   Human  ttct
                 Chinchilla  ttct
B D                   Horse  ttct
B D        White rhinoceros  ttct
            Golden hamster  ====
    Lesser Egyptian jerboa  ====
B D                     Rat  ====
              Prairie vole  ====
B D                   Mouse  ====
B D                    Pika  ====
B D                   Shrew  ====
B D              Guinea pig  ====
B D                  Rabbit  ====
                  Aardvark  ====
B D                  Baboon  ----
B D            Green monkey  ----
B D     Crab-eating macaque  ----
B D                  Rhesus  ====
          Cape golden mole  ====
B D                     Pig  ====
B D                 Megabat  ====
B D                 Dolphin  ====
B D                  Gibbon  ----
B D          Naked mole-rat  ====
          Brush-tailed rat  ====
       Cape elephant shrew  ====
        Chinese tree shrew  ====
B D                 Manatee  ====
B D                Elephant  ====
B D         Chinese hamster  ====
B D                  Tenrec  ====
B D                     Cat  ====
B D                Bushbaby  ====
              Weddell seal  ====
B D                 Ferret   ====
B D               Orangutan  ====
             Domestic goat  ====
B D                   Sheep  ====
          Tibetan antelope  ====
           Star-nosed mole  ====
            Bactrian camel  ====
B D                  Alpaca  ----
             Big brown bat  ----
            Pacific walrus  ====
B D                   Panda  ====
B D                     Cow  ====
              Killer whale  ====
B D                     Dog  ====
          Black flying-fox  ====
B D                Squirrel  ====
      David's myotis (bat)  ----
B D                Microbat  ====
B D         Squirrel monkey  ----
B D                Marmoset  ----
B D               Armadillo  ====
B D                 Gorilla  ====
B D                   Chimp  ====

Inserts between block 11 and 12 in window
                Chinchilla 1bp

Alignment block 12 of 496 in window, 111856963 - 111856965, 3 bps 
B D                   Human  cct-
B D                Bushbaby  cct-
                 Chinchilla  cc--
B D                   Horse  ccat
B D        White rhinoceros  ccag
            Golden hamster  ====
    Lesser Egyptian jerboa  ====
B D                     Rat  ====
              Prairie vole  ====
B D                   Mouse  ====
B D                    Pika  ====
B D                   Shrew  ====
B D              Guinea pig  ====
B D                  Rabbit  ====
                  Aardvark  ====
B D                  Baboon  ----
B D            Green monkey  ----
B D     Crab-eating macaque  ----
B D                  Rhesus  ====
          Cape golden mole  ====
B D                     Pig  ====
B D                 Megabat  ====
B D                 Dolphin  ====
B D                  Gibbon  ----
B D          Naked mole-rat  ====
          Brush-tailed rat  ====
       Cape elephant shrew  ====
        Chinese tree shrew  ====
B D                 Manatee  ====
B D                Elephant  ====
B D         Chinese hamster  ====
B D                  Tenrec  ====
B D                     Cat  ====
              Weddell seal  ====
B D                 Ferret   ====
B D               Orangutan  ====
             Domestic goat  ====
B D                   Sheep  ====
          Tibetan antelope  ====
           Star-nosed mole  ====
            Bactrian camel  ====
B D                  Alpaca  ----
             Big brown bat  ----
            Pacific walrus  ====
B D                   Panda  ====
B D                     Cow  ====
              Killer whale  ====
B D                     Dog  ====
          Black flying-fox  ====
B D                Squirrel  ====
      David's myotis (bat)  ----
B D                Microbat  ====
B D         Squirrel monkey  ----
B D                Marmoset  ----
B D               Armadillo  ====
B D                 Gorilla  ====
B D                   Chimp  ====

Alignment block 13 of 496 in window, 111856966 - 111856966, 1 bps 
B D                   Human  c
B D                 Gorilla  c
B D                  Gibbon  c
B D                Bushbaby  t
B D                Squirrel  c
B D          Naked mole-rat  c
                 Chinchilla  c
B D                     Pig  c
B D                  Alpaca  c
             Bactrian camel  c
B D                 Dolphin  c
               Killer whale  c
B D                   Horse  c
B D        White rhinoceros  c
B D               Armadillo  c
            Golden hamster  =
    Lesser Egyptian jerboa  =
B D                     Rat  =
              Prairie vole  =
B D                   Mouse  =
B D                    Pika  =
B D                   Shrew  =
B D              Guinea pig  =
B D                  Rabbit  =
                  Aardvark  =
B D                  Baboon  -
B D            Green monkey  -
B D     Crab-eating macaque  -
B D                  Rhesus  =
          Cape golden mole  =
B D                 Megabat  =
          Brush-tailed rat  =
       Cape elephant shrew  =
        Chinese tree shrew  =
B D                 Manatee  =
B D                Elephant  =
B D         Chinese hamster  =
B D                  Tenrec  =
B D                     Cat  =
              Weddell seal  =
B D                 Ferret   =
B D               Orangutan  =
             Domestic goat  =
B D                   Sheep  =
          Tibetan antelope  =
           Star-nosed mole  =
             Big brown bat  -
            Pacific walrus  =
B D                   Panda  =
B D                     Cow  =
B D                     Dog  =
          Black flying-fox  =
      David's myotis (bat)  -
B D                Microbat  =
B D         Squirrel monkey  -
B D                Marmoset  -
B D                   Chimp  =

Alignment block 14 of 496 in window, 111856967 - 111856982, 16 bps 
B D                   Human  tttgccctta-tttttt
B D                 Gorilla  ttcgccctta-tttttt
B D                  Gibbon  tttgccctta-tttttt
B D                  Rhesus  tttgccctta-tttttt
B D     Crab-eating macaque  tttgccctta-tttttt
B D                  Baboon  tttgccctta-tttttt
B D            Green monkey  tttgccctta-tttttt
B D                Bushbaby  tatgcccttg-tttttg
B D                Squirrel  tttgcctttg-tttttt
B D          Naked mole-rat  tttgtccttg-ttgttt
B D              Guinea pig  tttattctca-tttctc
                 Chinchilla  ---------a-tttctc
           Brush-tailed rat  tttcttctca-tttctc
B D                     Pig  tccccccttattttttt
B D                  Alpaca  ttttctctta-tttttt
             Bactrian camel  ttttctcttattttttt
B D                 Dolphin  tttcccctta-tttttt
               Killer whale  tttcccctta-tttttt
           Tibetan antelope  tttcccctta-tttttt
B D                     Cow  tttcccctta-tttttt
B D                   Sheep  tttcccctta-tttttt
              Domestic goat  tttcccctta-tttttt
B D                   Horse  tttgccttta-tttttt
B D        White rhinoceros  tttgccctta-tttttc
B D                Elephant  tttgcccttc-cttttt
B D                 Manatee  tttgcccttg-cttttt
B D               Armadillo  tttgactttg-ctttt-
            Golden hamster  =================
    Lesser Egyptian jerboa  =================
B D                     Rat  =================
              Prairie vole  =================
B D                   Mouse  =================
B D                    Pika  =================
B D                   Shrew  =================
B D                  Rabbit  =================
                  Aardvark  =================
          Cape golden mole  =================
B D                 Megabat  =================
       Cape elephant shrew  =================
        Chinese tree shrew  =================
B D         Chinese hamster  =================
B D                  Tenrec  =================
B D                     Cat  =================
              Weddell seal  =================
B D                 Ferret   =================
B D               Orangutan  =================
           Star-nosed mole  =================
             Big brown bat  -----------------
            Pacific walrus  =================
B D                   Panda  =================
B D                     Dog  =================
          Black flying-fox  =================
      David's myotis (bat)  -----------------
B D                Microbat  =================
B D         Squirrel monkey  -----------------
B D                Marmoset  -----------------
B D                   Chimp  =================

Inserts between block 14 and 15 in window
B D               Bushbaby 3bp
B D                 Alpaca 3bp
            Bactrian camel 3bp

Alignment block 15 of 496 in window, 111856983 - 111856996, 14 bps 
B D                   Human  aaagc--ccagtgttt
B D                 Gorilla  aaagc--ccagtgttt
B D               Orangutan  aaagc--ccagtgttt
B D                  Gibbon  aaagc--ccagtgttt
B D                  Rhesus  aaagc--ccagtg---
B D     Crab-eating macaque  aaagc--ccagtg---
B D                  Baboon  aaagc--ccagtg---
B D            Green monkey  aaagc--ccagtgt--
B D                Bushbaby  taagc--caatttttt
B D                Squirrel  aaggc--caatttttt
B D          Naked mole-rat  aaagc--caacttttt
B D              Guinea pig  aaaat--caagtctat
                 Chinchilla  -atat--ctattctac
           Brush-tailed rat  aatat--ctattctac
B D                     Pig  aaggg--caagttttt
B D                  Alpaca  aaagt--caaattttt
             Bactrian camel  aaagt--caaattttt
B D                 Dolphin  aaagt--caaattttt
               Killer whale  aaagt--caaattttt
           Tibetan antelope  aaagt--caaaattac
B D                     Cow  aaagt--caaaattgc
B D                   Sheep  aaagt--caaaattac
              Domestic goat  aaagt--caaaattac
B D                   Horse  aaagc--cagattttt
B D        White rhinoceros  aaagc--cagattttt
B D                Elephant  aaagc--caagttttt
B D                 Manatee  aaagc--caagttttt
                   Aardvark  aaagt--aaaattttt
B D               Armadillo  aaagtaaaaaatttct
            Golden hamster  ================
    Lesser Egyptian jerboa  ================
B D                     Rat  ================
              Prairie vole  ================
B D                   Mouse  ================
B D                    Pika  ================
B D                   Shrew  ================
B D                  Rabbit  ================
          Cape golden mole  ================
B D                 Megabat  ================
       Cape elephant shrew  ================
        Chinese tree shrew  ================
B D         Chinese hamster  ================
B D                  Tenrec  ================
B D                     Cat  ================
              Weddell seal  ================
B D                 Ferret   ================
           Star-nosed mole  ================
             Big brown bat  ----------------
            Pacific walrus  ================
B D                   Panda  ================
B D                     Dog  ================
          Black flying-fox  ================
      David's myotis (bat)  ----------------
B D                Microbat  ================
B D         Squirrel monkey  ----------------
B D                Marmoset  ----------------
B D                   Chimp  ================

Alignment block 16 of 496 in window, 111856997 - 111856997, 1 bps 
B D                   Human  a
B D                 Gorilla  a
B D               Orangutan  a
B D                  Gibbon  a
B D                Bushbaby  a
B D                Squirrel  a
B D          Naked mole-rat  a
B D              Guinea pig  a
                 Chinchilla  a
           Brush-tailed rat  a
B D                     Pig  a
B D                  Alpaca  a
             Bactrian camel  a
B D                 Dolphin  a
               Killer whale  a
           Tibetan antelope  a
B D                     Cow  a
B D                   Sheep  a
              Domestic goat  a
B D                   Horse  a
B D        White rhinoceros  a
               Weddell seal  a
B D                Elephant  a
B D                 Manatee  a
                   Aardvark  a
B D               Armadillo  a
            Golden hamster  =
    Lesser Egyptian jerboa  =
B D                     Rat  =
              Prairie vole  =
B D                   Mouse  =
B D                    Pika  =
B D                   Shrew  =
B D                  Rabbit  =
B D                  Baboon  -
B D            Green monkey  -
B D     Crab-eating macaque  -
B D                  Rhesus  -
          Cape golden mole  =
B D                 Megabat  =
       Cape elephant shrew  =
        Chinese tree shrew  =
B D         Chinese hamster  =
B D                  Tenrec  =
B D                     Cat  =
B D                 Ferret   =
           Star-nosed mole  =
             Big brown bat  -
            Pacific walrus  =
B D                   Panda  =
B D                     Dog  =
          Black flying-fox  =
      David's myotis (bat)  -
B D                Microbat  =
B D         Squirrel monkey  -
B D                Marmoset  -
B D                   Chimp  =

Alignment block 17 of 496 in window, 111856998 - 111856998, 1 bps 
B D                   Human  t
B D                 Gorilla  t
B D               Orangutan  t
B D                  Gibbon  t
B D     Crab-eating macaque  t
B D                  Baboon  t
B D            Green monkey  t
B D         Squirrel monkey  t
B D                Bushbaby  t
B D                Squirrel  t
B D          Naked mole-rat  t
B D              Guinea pig  t
                 Chinchilla  t
           Brush-tailed rat  c
B D                     Pig  t
B D                  Alpaca  t
             Bactrian camel  t
B D                 Dolphin  t
               Killer whale  t
           Tibetan antelope  t
B D                     Cow  t
B D                   Sheep  t
              Domestic goat  t
B D                   Horse  t
B D        White rhinoceros  t
               Weddell seal  c
B D                 Megabat  t
B D                Elephant  t
B D                 Manatee  t
                   Aardvark  t
B D               Armadillo  t
            Golden hamster  =
    Lesser Egyptian jerboa  =
B D                     Rat  =
              Prairie vole  =
B D                   Mouse  =
B D                    Pika  =
B D                   Shrew  =
B D                  Rabbit  =
B D                  Rhesus  -
          Cape golden mole  =
       Cape elephant shrew  =
        Chinese tree shrew  =
B D         Chinese hamster  =
B D                  Tenrec  =
B D                     Cat  =
B D                 Ferret   =
           Star-nosed mole  =
             Big brown bat  -
            Pacific walrus  =
B D                   Panda  =
B D                     Dog  =
          Black flying-fox  =
      David's myotis (bat)  -
B D                Microbat  =
B D                Marmoset  -
B D                   Chimp  =

Alignment block 18 of 496 in window, 111856999 - 111856999, 1 bps 
B D                   Human  t
B D                 Gorilla  t
B D               Orangutan  t
B D                  Gibbon  t
B D                  Rhesus  t
B D     Crab-eating macaque  t
B D                  Baboon  t
B D            Green monkey  t
B D         Squirrel monkey  c
B D                Bushbaby  t
B D                Squirrel  a
B D          Naked mole-rat  t
B D              Guinea pig  t
                 Chinchilla  t
           Brush-tailed rat  t
B D                     Pig  t
B D                  Alpaca  t
             Bactrian camel  t
B D                 Dolphin  t
               Killer whale  t
           Tibetan antelope  t
B D                     Cow  t
B D                   Sheep  t
              Domestic goat  t
B D                   Horse  c
B D        White rhinoceros  t
B D                 Megabat  t
B D                Elephant  c
B D                 Manatee  c
                   Aardvark  c
B D               Armadillo  c
            Golden hamster  =
    Lesser Egyptian jerboa  =
B D                     Rat  =
              Prairie vole  =
B D                   Mouse  =
B D                    Pika  =
B D                   Shrew  =
B D                  Rabbit  =
          Cape golden mole  =
       Cape elephant shrew  =
        Chinese tree shrew  =
B D         Chinese hamster  =
B D                  Tenrec  =
B D                     Cat  =
              Weddell seal  =
B D                 Ferret   =
           Star-nosed mole  =
             Big brown bat  -
            Pacific walrus  =
B D                   Panda  =
B D                     Dog  =
          Black flying-fox  =
      David's myotis (bat)  -
B D                Microbat  =
B D                Marmoset  -
B D                   Chimp  =

Inserts between block 18 and 19 in window
B D                Gorilla 1bp
B D              Orangutan 1bp
B D                 Gibbon 1bp
B D                 Rhesus 1bp
B D    Crab-eating macaque 1bp
B D                 Baboon 1bp
B D           Green monkey 1bp
B D               Bushbaby 1bp
B D               Squirrel 1bp
B D         Naked mole-rat 1bp
B D             Guinea pig 1bp
                Chinchilla 1bp
          Brush-tailed rat 1bp
B D                    Pig 2bp
B D                 Alpaca 1bp
            Bactrian camel 1bp
B D                Dolphin 1bp
              Killer whale 1bp
          Tibetan antelope 1bp
B D                    Cow 1bp
B D                  Sheep 1bp
             Domestic goat 1bp
B D                  Horse 1bp
B D       White rhinoceros 1bp
B D                Megabat 113bp

Alignment block 19 of 496 in window, 111857000 - 111857014, 15 bps 
B D                   Human  -ttttttct-cttaagc
B D                 Gorilla  -ttttttct-cttaagc
B D               Orangutan  -ttgtttct-cttaggc
B D                  Gibbon  -ttttttct-cttaagc
B D                  Rhesus  -tttttaat-ctcaagc
B D     Crab-eating macaque  -tttttaat-ctcaagc
B D                  Baboon  -tttttaat-cttaagc
B D            Green monkey  -tttttaat-cttaagc
B D                Marmoset  -ctcttttt-tctaagc
B D         Squirrel monkey  -ttttttct-cttaagc
B D                Bushbaby  -ttttttct-cttaagc
B D                Squirrel  -tttttttatcttaagc
B D          Naked mole-rat  -ttttccct-cttaagc
B D              Guinea pig  -tggctctt-tttatgc
                 Chinchilla  -tggtccttatttacac
           Brush-tailed rat  -tggtccttatttacac
B D                     Pig  -ttttttct-ctaaagc
B D                  Alpaca  -ttttattt-ctaaagc
             Bactrian camel  -ttttattc-ctaaagc
B D                 Dolphin  -ctttctct-ctaaagc
               Killer whale  -ctttctct-ctaaagc
           Tibetan antelope  -ctttctct-ctaaagc
B D                     Cow  -ctttctct-ctaaagc
B D                   Sheep  -ctttctct-ctaaagc
              Domestic goat  -ctttctct-ctaaagc
B D                   Horse  -ttttctct-cttaagc
B D        White rhinoceros  -ttttctct-cttaagc
B D                Elephant  cttttctct-cttaagt
B D                 Manatee  cttttcttt-cttaagt
                   Aardvark  c--ttctct-ctcaagt
B D               Armadillo  ctcttctct-gtttagc
            Golden hamster  =================
    Lesser Egyptian jerboa  =================
B D                     Rat  =================
              Prairie vole  =================
B D                   Mouse  =================
B D                    Pika  =================
B D                   Shrew  =================
B D                  Rabbit  =================
          Cape golden mole  =================
B D                 Megabat  =================
       Cape elephant shrew  =================
        Chinese tree shrew  =================
B D         Chinese hamster  =================
B D                  Tenrec  =================
B D                     Cat  =================
              Weddell seal  =================
B D                 Ferret   =================
           Star-nosed mole  =================
             Big brown bat  -----------------
            Pacific walrus  =================
B D                   Panda  =================
B D                     Dog  =================
          Black flying-fox  =================
      David's myotis (bat)  -----------------
B D                Microbat  =================
B D                   Chimp  =================

Inserts between block 19 and 20 in window
B D                Dolphin 1bp
              Killer whale 1bp

Alignment block 20 of 496 in window, 111857015 - 111857063, 49 bps 
B D                   Human  atcaggcttgt---------gaagttgaaaaccatgactttcaagattattg---tctctt---------
B D                   Chimp  atcaggcttgt---------gaagttgaaaaccatgactttcaagattattg---tctctt---------
B D                 Gorilla  atcaggcttgt---------gaagttgaaaaccatgactttcaag---attg---tctcct---------
B D               Orangutan  atcaggcttgt---------gaagttgaaaaccatgactttcaagattattg---tctctt---------
B D                  Gibbon  atcaggcttgt---------gaagttgaaaaccatgactttcaagattattg---tctcct---------
B D                  Rhesus  atcaggcttgt---------gaagttgaaagccatgactttcaagattattg---tttctt---------
B D     Crab-eating macaque  atcaggcttgt---------gaagttgaaagccatgactttcaagattattg---tttctt---------
B D                  Baboon  atcaggcttgt---------gaagttgaaagccatgactttcaagatgattg---tttctt---------
B D            Green monkey  atcaggcttgt---------gaagttgaaagccatgactttcaagattattg---tttctt---------
B D                Marmoset  atcatgcttgt---------gaagatgaaatccatgaccttcaagattattg---tctctt---------
B D         Squirrel monkey  atcatgattat---------gaagatgaaatccatgactttaaagattactg---tctctt---------
B D                Bushbaby  accaggcctgt---------gaggttgaaaactatgactttcgagattatta---tcaatg---------
B D                Squirrel  atcaagcttat---------gaagttgaaaaccgtaattgtcaagattattg---tctctg---------
B D          Naked mole-rat  ctcaatcttat---------gaagttgcaagttatgactttcaagattactg---tctttg---------
B D              Guinea pig  tttcagtttctcacaccagagaatttgtaaatcatgactttcaagattactg---tctctg---------
                 Chinchilla  tttcagtttctcacaccagagaactcgctagtcatgactttcaagattgcta---tctccg---------
           Brush-tailed rat  ttgcagtttctcatgccagagtagttgctagtcataactttcaatattattg---tctctg---------
B D                     Pig  atcagactcat---------gaagtcaaaagccctgactttcaagattgttg---tctccg---------
B D                  Alpaca  atcaggctcat---------gaagttaaaaaccatgactttcaagattattg---tctcca---------
             Bactrian camel  atcaggctcat---------gaagttaaaaaccatgactttcaagattattg---tcttca---------
B D                 Dolphin  atc-------------------agttgaaaaccatgactttcaagattattgaaatctctg---------
               Killer whale  atcagggtcat---------gaagttgaaaaccatgactttcaagattattgaaatctctg---------
           Tibetan antelope  atcaggctcac---------aaagttgaaaaccgtgactttcaagattattg---tctcta---------
B D                     Cow  atcaggctcac---------aaagttgaaaaccatgactttcaagattattg---tctcct---------
B D                   Sheep  atcaggctcac---------aaagttgaaaaccatgactttcaagattattg---tctcca---------
              Domestic goat  atcaggctcac---------aaagttgaaaaccatgactttcaagattattg---tctcca---------
B D                   Horse  atcaggtttag---------gaagttgaaaaccatgactttgaagattattg---tctctg---------
B D        White rhinoceros  atcaggctcat---------gatgttgaaaaccatgactttcaagattattg---tctctg---------
B D                Elephant  atcaggctcat---------gaagttggaaaccatgactttcgaggttattt---tctccactgcagatt
B D                 Manatee  atcaggctcat---------gaagttgaaaaccatgactttcaaggttatta---tatccactgcagatt
                   Aardvark  atcatg-tcat---------gaagttgaaaatcatgactttcaaaattatca---tctctgctgcaggtt
B D               Armadillo  at--gtctcct---------gaaaccgaaaacagtaactttcaaaat--ttt---tgtctgttacaaatt
            Golden hamster  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
B D                     Rat  ======================================================================
              Prairie vole  ======================================================================
B D                   Mouse  ======================================================================
B D                    Pika  ======================================================================
B D                   Shrew  ======================================================================
B D                  Rabbit  ======================================================================
          Cape golden mole  ======================================================================
B D                 Megabat  ======================================================================
       Cape elephant shrew  ======================================================================
        Chinese tree shrew  ======================================================================
B D         Chinese hamster  ======================================================================
B D                  Tenrec  ======================================================================
B D                     Cat  ======================================================================
              Weddell seal  ======================================================================
B D                 Ferret   ======================================================================
           Star-nosed mole  ======================================================================
             Big brown bat  ----------------------------------------------------------------------
            Pacific walrus  ======================================================================
B D                   Panda  ======================================================================
B D                     Dog  ======================================================================
          Black flying-fox  ======================================================================
      David's myotis (bat)  ----------------------------------------------------------------------
B D                Microbat  ======================================================================

                      Human  -
                      Chimp  -
                    Gorilla  -
                  Orangutan  -
                     Gibbon  -
                     Rhesus  -
        Crab-eating macaque  -
                     Baboon  -
               Green monkey  -
                   Marmoset  -
            Squirrel monkey  -
                   Bushbaby  -
                   Squirrel  -
             Naked mole-rat  -
                 Guinea pig  -
                 Chinchilla  -
           Brush-tailed rat  -
                        Pig  -
                     Alpaca  -
             Bactrian camel  -
                    Dolphin  -
               Killer whale  -
           Tibetan antelope  -
                        Cow  -
                      Sheep  -
              Domestic goat  -
                      Horse  -
           White rhinoceros  -
                   Elephant  t
                    Manatee  t
                   Aardvark  t
                  Armadillo  t
             Golden hamster  =
     Lesser Egyptian jerboa  =
                        Rat  =
               Prairie vole  =
                      Mouse  =
                       Pika  =
                      Shrew  =
                     Rabbit  =
           Cape golden mole  =
                    Megabat  =
        Cape elephant shrew  =
         Chinese tree shrew  =
            Chinese hamster  =
                     Tenrec  =
                        Cat  =
               Weddell seal  =
                    Ferret   =
            Star-nosed mole  =
              Big brown bat  -
             Pacific walrus  =
                      Panda  =
                        Dog  =
           Black flying-fox  =
       David's myotis (bat)  -
                   Microbat  =

Inserts between block 20 and 21 in window
B D        Squirrel monkey 1657bp
B D               Bushbaby 10bp
B D               Squirrel 10bp
B D         Naked mole-rat 10bp
                Chinchilla 10bp
          Brush-tailed rat 10bp
B D                    Pig 11bp
B D                 Alpaca 10bp
            Bactrian camel 10bp
B D                Dolphin 9bp
              Killer whale 9bp
          Tibetan antelope 11bp
B D                    Cow 11bp
B D                  Sheep 11bp
             Domestic goat 11bp
B D                  Horse 10bp
B D       White rhinoceros 10bp

Alignment block 21 of 496 in window, 111857064 - 111857077, 14 bps 
B D                   Human  acaaaagtct-acct
B D                   Chimp  acaaaagtct-actt
B D                 Gorilla  tcaaaagtct-actt
B D               Orangutan  acaaaagtct-actt
B D                  Gibbon  acaaaaatct-tctt
B D                  Rhesus  acaaaagtct-actt
B D     Crab-eating macaque  acaaaagtct-actt
B D                  Baboon  acaaaagtct-actt
B D            Green monkey  acaaaagtct-actt
B D                Marmoset  acaagagtct-actt
B D                Bushbaby  acaaaaatct-actc
B D                Squirrel  ataaaggact-cctc
B D          Naked mole-rat  acaaaagtct-actc
B D              Guinea pig  ------------ctc
                 Chinchilla  acaaaagtct-actc
           Brush-tailed rat  acaaaagtct-actc
B D                     Pig  ttt------------
B D                  Alpaca  ttaaaagctt-actc
             Bactrian camel  ataaaagctt-actc
B D                 Dolphin  ataaaagatt-actc
               Killer whale  ataaaagatt-actc
           Tibetan antelope  ataaaagttt-actc
B D                     Cow  ataaaagttt-actc
B D                   Sheep  ataaaagttt-attc
              Domestic goat  ataaaagttt-actc
B D                   Horse  acaaaagcct-actc
B D        White rhinoceros  acaaaagcct-actc
B D                Elephant  ataaga-tct-acgc
B D                 Manatee  ataaga-tct-actc
                   Aardvark  ataaaa-ttt-actc
B D               Armadillo  acagaa-ttcaactc
            Golden hamster  ===============
    Lesser Egyptian jerboa  ===============
B D                     Rat  ===============
              Prairie vole  ===============
B D                   Mouse  ===============
B D                    Pika  ===============
B D                   Shrew  ===============
B D                  Rabbit  ===============
          Cape golden mole  ===============
B D                 Megabat  ===============
       Cape elephant shrew  ===============
        Chinese tree shrew  ===============
B D         Chinese hamster  ===============
B D                  Tenrec  ===============
B D                     Cat  ===============
              Weddell seal  ===============
B D                 Ferret   ===============
           Star-nosed mole  ===============
             Big brown bat  ---------------
            Pacific walrus  ===============
B D                   Panda  ===============
B D                     Dog  ===============
          Black flying-fox  ===============
      David's myotis (bat)  ---------------
B D                Microbat  ===============
B D         Squirrel monkey  ===============

Inserts between block 21 and 22 in window
B D                    Pig 409bp

Alignment block 22 of 496 in window, 111857078 - 111857103, 26 bps 
B D                   Human  gaaggctc-aaaatgcaaa-aattcaa--------------c
B D                   Chimp  gaaggctc-aaaatgcaaa-aattcaa--------------c
B D                 Gorilla  gaaggctc-aaaatgcaaa-aattcaa--------------c
B D               Orangutan  gaaggctc-aaaatgcaaa-aattcaa--------------c
B D                  Gibbon  gaaagctc-aaaatgcaaa-cattcaa--------------c
B D                  Rhesus  gaaagctc-aaaatgcaaa-aattcaa--------------c
B D     Crab-eating macaque  gaaagctc-aaaatgcaaa-aattcaa--------------c
B D                  Baboon  gaaagctc-aaaatgcaaa-aattcaa--------------c
B D            Green monkey  gaaagctc-aaaatgcaaa-aattcaa--------------c
B D                Marmoset  gaaagctc-aaaatgcaaa-aattcaa--------------t
B D                Bushbaby  aaaatctc-aaaatccaaataattcaa--------------c
B D                Squirrel  aaaagctc-aaatctaaat-aatttaa--------------c
B D          Naked mole-rat  aaaaattc-aaatccaaat-aattcac--------------c
B D              Guinea pig  aaa------aaattcaaat-actccac--------------c
                 Chinchilla  aaaaactc-aaatccaaat-aattcac--------------c
           Brush-tailed rat  aaaaactc-aaatccaaat-aattcac--------------c
B D                     Pig  aagagctcaaaatccaaat-aattcaa--------------c
B D                  Alpaca  aagagcgcaaaatccaaat-catttga--------------c
             Bactrian camel  aagtacgcaaaatccgaat-catttga--------------c
B D                 Dolphin  aagagctcaaaatccaaat-aattcaa--------------c
               Killer whale  aagagctcaaaatccaaat-aattcag--------------c
           Tibetan antelope  aagagttc-aaatccaaat-aatgcaacgtgtgcgcgtgcgc
B D                     Cow  aagagttc-aaatccaaat-aatacaa--------------c
B D                   Sheep  aagagttc-aaatccaaat-aatgcaa--------cctctgt
              Domestic goat  aagatttc-aaatccaaat-aatgcaa------------tgt
B D                   Horse  aagagctcaaaatccaaat-aattcaa--------------t
B D        White rhinoceros  aagagctcaaaatccaaat-tattcaa--------------t
B D                Elephant  aagagctcaaaatccaaat-aattcaa--------------c
B D                 Manatee  aaaagctcaaaatccaaat-aattcaa--------------c
                   Aardvark  aaaagctcaaagtccaaat-aattcaa---------------
B D               Armadillo  aagagctcaaaatctaaat-aattcca--------------t
            Golden hamster  ==========================================
    Lesser Egyptian jerboa  ==========================================
B D                     Rat  ==========================================
              Prairie vole  ==========================================
B D                   Mouse  ==========================================
B D                    Pika  ==========================================
B D                   Shrew  ==========================================
B D                  Rabbit  ==========================================
          Cape golden mole  ==========================================
B D                 Megabat  ==========================================
       Cape elephant shrew  ==========================================
        Chinese tree shrew  ==========================================
B D         Chinese hamster  ==========================================
B D                  Tenrec  ==========================================
B D                     Cat  ==========================================
              Weddell seal  ==========================================
B D                 Ferret   ==========================================
           Star-nosed mole  ==========================================
             Big brown bat  ------------------------------------------
            Pacific walrus  ==========================================
B D                   Panda  ==========================================
B D                     Dog  ==========================================
          Black flying-fox  ==========================================
      David's myotis (bat)  ------------------------------------------
B D                Microbat  ==========================================
B D         Squirrel monkey  ==========================================

Inserts between block 22 and 23 in window
B D               Squirrel 22bp

Alignment block 23 of 496 in window, 111857104 - 111857104, 1 bps 
B D                   Human  t
B D                   Chimp  t
B D                 Gorilla  t
B D               Orangutan  t
B D                  Gibbon  t
B D                  Rhesus  t
B D     Crab-eating macaque  t
B D                  Baboon  t
B D            Green monkey  t
B D                Marmoset  t
B D                Bushbaby  t
B D          Naked mole-rat  t
B D              Guinea pig  t
                 Chinchilla  t
           Brush-tailed rat  t
B D                     Pig  c
B D                  Alpaca  c
             Bactrian camel  c
B D                 Dolphin  c
               Killer whale  c
           Tibetan antelope  g
B D                     Cow  c
B D                   Sheep  g
              Domestic goat  g
B D                   Horse  t
B D        White rhinoceros  t
B D                 Megabat  t
B D                Elephant  c
B D                 Manatee  c
B D               Armadillo  t
            Golden hamster  =
    Lesser Egyptian jerboa  =
B D                     Rat  =
              Prairie vole  =
B D                   Mouse  =
B D                    Pika  =
B D                   Shrew  =
B D                  Rabbit  =
                  Aardvark  -
          Cape golden mole  =
       Cape elephant shrew  =
        Chinese tree shrew  =
B D         Chinese hamster  =
B D                  Tenrec  =
B D                     Cat  =
              Weddell seal  =
B D                 Ferret   =
           Star-nosed mole  =
             Big brown bat  -
            Pacific walrus  =
B D                   Panda  =
B D                     Dog  =
          Black flying-fox  =
B D                Squirrel  =
      David's myotis (bat)  -
B D                Microbat  =
B D         Squirrel monkey  =

Inserts between block 23 and 24 in window
B D                  Horse 9bp
B D       White rhinoceros 1bp

Alignment block 24 of 496 in window, 111857105 - 111857106, 2 bps 
B D                   Human  ca
B D                   Chimp  ca
B D                 Gorilla  ca
B D               Orangutan  ca
B D                  Gibbon  ca
B D                  Rhesus  cg
B D     Crab-eating macaque  cg
B D                  Baboon  cg
B D            Green monkey  cg
B D                Marmoset  cg
B D                Bushbaby  cg
B D          Naked mole-rat  ct
B D              Guinea pig  ct
                 Chinchilla  ct
           Brush-tailed rat  ct
B D                     Pig  cg
B D                  Alpaca  ct
             Bactrian camel  ct
B D                 Dolphin  cg
               Killer whale  ag
           Tibetan antelope  cg
B D                     Cow  tg
B D                   Sheep  tg
              Domestic goat  tg
B D                   Horse  ca
B D        White rhinoceros  ca
B D                Elephant  cc
B D                 Manatee  cc
B D               Armadillo  cc
            Golden hamster  ==
    Lesser Egyptian jerboa  ==
B D                     Rat  ==
              Prairie vole  ==
B D                   Mouse  ==
B D                    Pika  ==
B D                   Shrew  ==
B D                  Rabbit  ==
                  Aardvark  --
          Cape golden mole  ==
B D                 Megabat  ==
       Cape elephant shrew  ==
        Chinese tree shrew  ==
B D         Chinese hamster  ==
B D                  Tenrec  ==
B D                     Cat  ==
              Weddell seal  ==
B D                 Ferret   ==
           Star-nosed mole  ==
             Big brown bat  --
            Pacific walrus  ==
B D                   Panda  ==
B D                     Dog  ==
          Black flying-fox  ==
B D                Squirrel  ==
      David's myotis (bat)  --
B D                Microbat  ==
B D         Squirrel monkey  ==

Inserts between block 24 and 25 in window
B D         Naked mole-rat 30bp
B D             Guinea pig 45bp
                Chinchilla 34bp
          Brush-tailed rat 34bp
B D              Armadillo 4bp

Alignment block 25 of 496 in window, 111857107 - 111857118, 12 bps 
B D                   Human  tgtg--tatgt----gtg
B D                   Chimp  tgtg--tatgt----gtg
B D                 Gorilla  tgtg--tatgt----gtg
B D               Orangutan  tgtg--tatgt----gtg
B D                  Gibbon  tgtg--tatgt----gtg
B D                  Rhesus  tgtg--tatgt----atg
B D     Crab-eating macaque  tgtg--tatgt----atg
B D                  Baboon  tgtg--tatgt----atg
B D            Green monkey  tgtg--tatgt----atg
B D                Marmoset  tgtg--tgtgt----gtg
B D                Bushbaby  cgcg--tgcgt----gtg
B D                Squirrel  tgtg--tgtgt----gtg
               Prairie vole  tgtg--tgtgt----gtg
B D          Naked mole-rat  tgtg--tgtgt----gtg
B D              Guinea pig  tgtg--tgtgt----gtg
                 Chinchilla  tgtg--tgcatgcacgtg
           Brush-tailed rat  tgtg--tgtgt----gtg
B D                     Pig  tgtg--tgtgt----gtg
B D                  Alpaca  tttg--tgtgg----g--
             Bactrian camel  tttg--tgtgg----g--
B D                 Dolphin  tgtg--tgtgt----gtg
               Killer whale  tgtg--tgtgt----gtg
           Tibetan antelope  tgtg--tgtgt----gtg
B D                     Cow  tgtt--tgtgt----gtg
B D                   Sheep  tgtg--tgtgt----gtg
              Domestic goat  tgtg--tgtat----gtg
B D                   Horse  tgtg--tgcgt----gtg
B D        White rhinoceros  tgtg--tgtgt----gtg
B D                Elephant  tttgtatgtgt----g--
B D                 Manatee  tttg--tgagt----g--
                   Aardvark  tttg--tgtat----g--
B D               Armadillo  tgtg--tgtgc----a--
            Golden hamster  ==================
    Lesser Egyptian jerboa  ==================
B D                     Rat  ==================
B D                   Mouse  ==================
B D                    Pika  ==================
B D                   Shrew  ==================
B D                  Rabbit  ==================
          Cape golden mole  ==================
B D                 Megabat  ==================
       Cape elephant shrew  ==================
        Chinese tree shrew  ==================
B D         Chinese hamster  ==================
B D                  Tenrec  ==================
B D                     Cat  ==================
              Weddell seal  ==================
B D                 Ferret   ==================
           Star-nosed mole  ==================
             Big brown bat  ------------------
            Pacific walrus  ==================
B D                   Panda  ==================
B D                     Dog  ==================
          Black flying-fox  ==================
      David's myotis (bat)  ------------------
B D                Microbat  ==================
B D         Squirrel monkey  ==================

Inserts between block 25 and 26 in window
B D                    Pig 22bp
B D                Dolphin 656bp
              Killer whale 24bp
          Tibetan antelope 4bp
B D                    Cow 4bp
B D                  Sheep 4bp
             Domestic goat 4bp

Alignment block 26 of 496 in window, 111857119 - 111857126, 8 bps 
B D                   Human  tgtgt----------------------------ata
B D                   Chimp  tgtgt----------------------------ata
B D                 Gorilla  tgtgt----------------------------ata
B D               Orangutan  tgcgt----------------------------ata
B D                  Gibbon  tgtgt----------------------------ata
B D                  Rhesus  tgtgt----------------------------ata
B D     Crab-eating macaque  tgtgt----------------------------ata
B D                  Baboon  tgtgt----------------------------ata
B D            Green monkey  tgtgt----------------------------ata
B D                Marmoset  tgtgt----------------------------gtg
B D                Bushbaby  tgtgtgtgtacacatgcatgcacatgtacccacata
B D                Squirrel  tgtgt----------------------------gtg
               Prairie vole  tgtgt----------------------------gtg
B D          Naked mole-rat  tgtgt----------------------------gtg
B D              Guinea pig  tgtgt----------------------------gtg
                 Chinchilla  tgtgt----------------------------gtg
           Brush-tailed rat  tgtgt----------------------------gtg
B D                     Pig  tgcat----------------------------gtg
B D                  Alpaca  tgtgc----------------------------ata
             Bactrian camel  tgtgc----------------------------ata
B D                 Dolphin  --tgt----------------------------gta
               Killer whale  tgtgt----------------------------gta
           Tibetan antelope  tgtgt----------------------------gta
B D                     Cow  tgtgt----------------------------gtg
B D                   Sheep  tgtgt----------------------------gta
              Domestic goat  tgtgt----------------------------gta
B D                   Horse  tgtgt----------------------------gtg
B D        White rhinoceros  tgtgt----------------------------gtg
B D                Elephant  tgtgc----------------------------ctg
B D                 Manatee  tgtgc----------------------------ttg
                   Aardvark  tgtgc----------------------------ata
B D               Armadillo  tgtgt----------------------------atg
            Golden hamster  ====================================
    Lesser Egyptian jerboa  ====================================
B D                     Rat  ====================================
B D                   Mouse  ====================================
B D                    Pika  ====================================
B D                   Shrew  ====================================
B D                  Rabbit  ====================================
          Cape golden mole  ====================================
B D                 Megabat  ====================================
       Cape elephant shrew  ====================================
        Chinese tree shrew  ====================================
B D         Chinese hamster  ====================================
B D                  Tenrec  ====================================
B D                     Cat  ====================================
              Weddell seal  ====================================
B D                 Ferret   ====================================
           Star-nosed mole  ====================================
             Big brown bat  ------------------------------------
            Pacific walrus  ====================================
B D                   Panda  ====================================
B D                     Dog  ====================================
          Black flying-fox  ====================================
      David's myotis (bat)  ------------------------------------
B D                Microbat  ====================================
B D         Squirrel monkey  ====================================

Inserts between block 26 and 27 in window
B D                  Horse 4bp
B D       White rhinoceros 69bp

Alignment block 27 of 496 in window, 111857127 - 111857149, 23 bps 
B D                   Human  c-aaa---------------------------aatcttttcctgtt-cttgg
B D                   Chimp  c-aaa---------------------------aatattttcctgtt-cttgg
B D                 Gorilla  c-aaa---------------------------aatcttttcctgtt-cttgg
B D               Orangutan  c-aaa---------------------------aatcttttactgtt-cttgg
B D                  Gibbon  c-aaa---------------------------aatcttttcctgtt-cttgg
B D                  Rhesus  c-aaa---------------------------attcttttcctgtt-cttgg
B D     Crab-eating macaque  c-aaa---------------------------attcttttcctgtt-cttgg
B D                  Baboon  c-aaa---------------------------attcttttcctgtt-cttgg
B D            Green monkey  c-aaa---------------------------attcttttcctgtt-cttgg
B D                Marmoset  t-gtgtgtgtgtgtgtgcttgaatcttttcctgctcttttcctgct-cttgg
B D                Bushbaby  t-aga---------------------------aatctcttcctgct-cttgg
B D                Squirrel  t-aaa---------------------------aatctcttcctgct-cttgg
               Prairie vole  t-gtg---------------------------tgtgtgtgtcttct-cctgg
B D          Naked mole-rat  t-aaa---------------------------aagctcttcctgtt-tttgc
B D              Guinea pig  t-aaa---------------------------agtctcttcctgtt-cttgg
                 Chinchilla  t-aaa---------------------------aatctcttcttgct-cttgg
           Brush-tailed rat  t-aaa---------------------------aaattcttcctgtt-cttgg
B D                     Pig  t-aaa---------------------------aatatcttcctgttccttga
B D                  Alpaca  t-aaa---------------------------aatctcttcttgtcccttga
             Bactrian camel  t-aaa---------------------------aatctcttcctgtcccttga
B D                 Dolphin  gaaaa---------------------------aatctcttcctgctacttgc
               Killer whale  g-aaa---------------------------aatctcttcctgctacttgc
           Tibetan antelope  t-aaa---------------------------agtctcttcccactccttga
B D                     Cow  t-aaa---------------------------agtctcttcccactccttga
B D                   Sheep  t-aaa---------------------------agtgtcttcccactccttga
              Domestic goat  t-aaa---------------------------agtctcttcccactccttga
B D                   Horse  t-aaa---------------------------aatgtcttcctgctccttga
B D                Elephant  t-aaa---------------------------aatctcttcctgttgtttag
B D                 Manatee  t-aaa---------------------------aaatctcttctgttgtttgg
                   Aardvark  t-aaa---------------------------aatctcttcctgct-tatgg
B D               Armadillo  t-aaa---------------------------aatttcctcctact---tag
            Golden hamster  ====================================================
    Lesser Egyptian jerboa  ====================================================
B D                     Rat  ====================================================
B D                   Mouse  ====================================================
B D                    Pika  ====================================================
B D                   Shrew  ====================================================
B D                  Rabbit  ====================================================
          Cape golden mole  ====================================================
B D                 Megabat  ====================================================
       Cape elephant shrew  ====================================================
        Chinese tree shrew  ====================================================
B D         Chinese hamster  ====================================================
B D                  Tenrec  ====================================================
B D                     Cat  ====================================================
              Weddell seal  ====================================================
B D                 Ferret   ====================================================
           Star-nosed mole  ====================================================
             Big brown bat  ----------------------------------------------------
            Pacific walrus  ====================================================
B D                   Panda  ====================================================
B D                     Dog  ====================================================
          Black flying-fox  ====================================================
B D        White rhinoceros  ====================================================
      David's myotis (bat)  ----------------------------------------------------
B D                Microbat  ====================================================
B D         Squirrel monkey  ====================================================

Inserts between block 27 and 28 in window
                  Aardvark 2694bp

Alignment block 28 of 496 in window, 111857150 - 111857183, 34 bps 
B D                   Human  atagtggggag------aatgatctgagcaaa---acaaag-aa
B D                   Chimp  atagtggggag------aatgatctgagcaaa---acaaag-aa
B D                 Gorilla  atagtggggag------aatgatctgagcaaa---acaaagaaa
B D               Orangutan  atagtggggag------aatgatctgagcaaa---acaaag-aa
B D                  Gibbon  atagtggggag------aatgagctgagcaaa---acaaag-aa
B D                  Rhesus  atagtggggag------aatgatctgagcaaa---agaaat-ta
B D     Crab-eating macaque  atagtggggag------aatgatctgagcaaa---agaaat-ta
B D                  Baboon  atagtggggag------aatgatcggagcaaa---agaaat-ta
B D            Green monkey  atggtggggag------aatgatctgagcaaa---agaaat-ta
B D                Marmoset  atagtggggag------aatgatctgagcaaa---agaaag---
B D                Bushbaby  atagtgagaag------aatcatctgagcaaagggaggagg-aa
B D                Squirrel  atggtggggag------aatgatctgagcaaa---agagag-ag
               Prairie vole  acaat-gggag------agtggtctaagcaaa---agaagg-ag
B D          Naked mole-rat  ataatggggag------aatggtctgagttaa---gggaaa-ag
B D              Guinea pig  atagtggggag------aattgtctgagctta---gggaaa-at
                 Chinchilla  ataatggagag------aatggtctaagctaa---gggaaa-ag
           Brush-tailed rat  ataatggggag------gatagtctgagctaa---ggggga-aa
B D                     Pig  atagtgatgga-----aaatgatctgggcaaa---agaatg-aa
B D                  Alpaca  acgcttaggga-----aaataatctgagcaaa---aggaaa-ac
             Bactrian camel  acgctcaggga-----aaataatctgagcaaa---aggaaa-ac
B D                 Dolphin  atagtgaggga-----aaatgatctgggcaaa---agaaag-aa
               Killer whale  atagtgaggga-----aaatgatctgggcaaa---agaaag-ag
           Tibetan antelope  atagtgagggaaaatcaaatgatctgggcaaa---agaaag-ag
B D                     Cow  atagtgagggaaaatcaaatgatctgggcaaa---agaaag-ag
B D                   Sheep  atagtgaggggaaatcaaatgatctgggcaaa---aggaag-ag
              Domestic goat  atagtgagggaaaatcaaatgatctgggcaaa---agaaag-ag
B D                   Horse  atagtgaggag------aatgatctgggcaaa---aggaag-ag
B D                Elephant  gtagtggggag------aatagtctgggcaaa---aagaag-ag
B D                 Manatee  atagtggggag------aatggtctgggcaaa---gaggag-ag
B D               Armadillo  ataacggggag------aatgcactgatacaa---aggaag-aa
            Golden hamster  ============================================
    Lesser Egyptian jerboa  ============================================
B D                     Rat  ============================================
B D                   Mouse  ============================================
B D                    Pika  ============================================
B D                   Shrew  ============================================
B D                  Rabbit  ============================================
                  Aardvark  ============================================
          Cape golden mole  ============================================
B D                 Megabat  ============================================
       Cape elephant shrew  ============================================
        Chinese tree shrew  ============================================
B D         Chinese hamster  ============================================
B D                  Tenrec  ============================================
B D                     Cat  ============================================
              Weddell seal  ============================================
B D                 Ferret   ============================================
           Star-nosed mole  ============================================
             Big brown bat  --------------------------------------------
            Pacific walrus  ============================================
B D                   Panda  ============================================
B D                     Dog  ============================================
          Black flying-fox  ============================================
B D        White rhinoceros  ============================================
      David's myotis (bat)  --------------------------------------------
B D                Microbat  ============================================
B D         Squirrel monkey  ============================================

Inserts between block 28 and 29 in window
B D                    Pig 8397bp

Alignment block 29 of 496 in window, 111857184 - 111857186, 3 bps 
B D                   Human  aaa
B D                   Chimp  aaa
B D                 Gorilla  aaa
B D               Orangutan  aaa
B D                  Gibbon  aaa
B D                  Rhesus  aaa
B D     Crab-eating macaque  aaa
B D                  Baboon  aaa
B D            Green monkey  aaa
B D                Marmoset  aaa
B D                Bushbaby  aaa
B D                Squirrel  aga
               Prairie vole  aaa
B D          Naked mole-rat  aaa
B D              Guinea pig  aaa
                 Chinchilla  aaa
           Brush-tailed rat  aaa
B D                  Alpaca  aca
             Bactrian camel  aca
B D                 Dolphin  aaa
               Killer whale  aaa
           Tibetan antelope  aaa
B D                     Cow  aaa
B D                   Sheep  aaa
              Domestic goat  aaa
B D                   Horse  aga
B D                Elephant  aaa
B D                 Manatee  aaa
B D               Armadillo  aaa
            Golden hamster  ===
    Lesser Egyptian jerboa  ===
B D                     Rat  ===
B D                   Mouse  ===
B D                    Pika  ===
B D                   Shrew  ===
B D                  Rabbit  ===
                  Aardvark  ===
          Cape golden mole  ===
B D                     Pig  ===
B D                 Megabat  ===
       Cape elephant shrew  ===
        Chinese tree shrew  ===
B D         Chinese hamster  ===
B D                  Tenrec  ===
B D                     Cat  ===
              Weddell seal  ===
B D                 Ferret   ===
           Star-nosed mole  ===
             Big brown bat  ---
            Pacific walrus  ===
B D                   Panda  ===
B D                     Dog  ===
          Black flying-fox  ===
B D        White rhinoceros  ===
      David's myotis (bat)  ---
B D                Microbat  ===
B D         Squirrel monkey  ===

Inserts between block 29 and 30 in window
B D               Squirrel 1bp
              Prairie vole 1bp
          Brush-tailed rat 26bp

Alignment block 30 of 496 in window, 111857187 - 111857188, 2 bps 
B D                   Human  aa
B D                   Chimp  aa
B D                 Gorilla  aa
B D               Orangutan  aa
B D                  Gibbon  aa
B D                  Rhesus  aa
B D     Crab-eating macaque  aa
B D                  Baboon  aa
B D            Green monkey  aa
B D                Marmoset  aa
B D                Bushbaby  aa
B D                Squirrel  a-
               Prairie vole  a-
B D          Naked mole-rat  a-
B D              Guinea pig  a-
                 Chinchilla  a-
B D                  Alpaca  -a
             Bactrian camel  -a
B D                 Dolphin  -a
               Killer whale  -a
           Tibetan antelope  -a
B D                     Cow  -a
B D                   Sheep  -a
              Domestic goat  -a
B D                   Horse  -a
B D                Elephant  aa
B D                 Manatee  aa
B D               Armadillo  aa
            Golden hamster  ==
    Lesser Egyptian jerboa  ==
B D                     Rat  ==
B D                   Mouse  ==
B D                    Pika  ==
B D                   Shrew  ==
B D                  Rabbit  ==
                  Aardvark  ==
          Cape golden mole  ==
B D                     Pig  ==
B D                 Megabat  ==
          Brush-tailed rat  ==
       Cape elephant shrew  ==
        Chinese tree shrew  ==
B D         Chinese hamster  ==
B D                  Tenrec  ==
B D                     Cat  ==
              Weddell seal  ==
B D                 Ferret   ==
           Star-nosed mole  ==
             Big brown bat  --
            Pacific walrus  ==
B D                   Panda  ==
B D                     Dog  ==
          Black flying-fox  ==
B D        White rhinoceros  ==
      David's myotis (bat)  --
B D                Microbat  ==
B D         Squirrel monkey  ==

Inserts between block 30 and 31 in window
B D         Naked mole-rat 1bp
B D             Guinea pig 28bp
                Chinchilla 1bp
B D                 Alpaca 1bp
            Bactrian camel 1bp
B D                Dolphin 1bp
              Killer whale 1bp
          Tibetan antelope 1bp
B D                    Cow 1bp
B D                  Sheep 1bp
             Domestic goat 1bp
B D                  Horse 1bp

Alignment block 31 of 496 in window, 111857189 - 111857190, 2 bps 
B D                   Human  a---------a
B D                   Chimp  a---------a
B D                 Gorilla  a---------a
B D               Orangutan  a---------a
B D                  Gibbon  a---------a
B D                  Rhesus  aaaaaaaa---
B D     Crab-eating macaque  aaaaaaaa--a
B D                  Baboon  aaaaaaaaaaa
B D            Green monkey  a---------a
B D                Marmoset  a---------a
B D                Bushbaby  a---------a
B D                Squirrel  ----------a
               Prairie vole  ----------a
B D          Naked mole-rat  ----------a
                 Chinchilla  ----------a
B D                  Alpaca  ----------c
             Bactrian camel  ----------c
B D                 Dolphin  ----------a
               Killer whale  ----------g
           Tibetan antelope  ----------a
B D                     Cow  ----------a
B D                   Sheep  ----------a
              Domestic goat  ----------a
B D                   Horse  ----------a
B D                Elephant  ---------aa
B D                 Manatee  ---------aa
B D               Armadillo  ---------aa
            Golden hamster  ===========
    Lesser Egyptian jerboa  ===========
B D                     Rat  ===========
B D                   Mouse  ===========
B D                    Pika  ===========
B D                   Shrew  ===========
B D              Guinea pig  ===========
B D                  Rabbit  ===========
                  Aardvark  ===========
          Cape golden mole  ===========
B D                     Pig  ===========
B D                 Megabat  ===========
          Brush-tailed rat  ===========
       Cape elephant shrew  ===========
        Chinese tree shrew  ===========
B D         Chinese hamster  ===========
B D                  Tenrec  ===========
B D                     Cat  ===========
              Weddell seal  ===========
B D                 Ferret   ===========
           Star-nosed mole  ===========
             Big brown bat  -----------
            Pacific walrus  ===========
B D                   Panda  ===========
B D                     Dog  ===========
          Black flying-fox  ===========
B D        White rhinoceros  ===========
      David's myotis (bat)  -----------
B D                Microbat  ===========
B D         Squirrel monkey  ===========

Inserts between block 31 and 32 in window
B D               Squirrel 1bp
              Prairie vole 1bp
B D         Naked mole-rat 1bp
                Chinchilla 1bp
B D                 Alpaca 1bp
            Bactrian camel 1bp
B D                Dolphin 1bp
              Killer whale 1bp
          Tibetan antelope 1bp
B D                    Cow 1bp
B D                  Sheep 1bp
             Domestic goat 1bp
B D                  Horse 1bp
B D                Manatee 224bp
B D              Armadillo 1bp

Alignment block 32 of 496 in window, 111857191 - 111857191, 1 bps 
B D                   Human  c
B D                   Chimp  c
B D                 Gorilla  c
B D               Orangutan  c
B D                  Gibbon  c
B D     Crab-eating macaque  c
B D                  Baboon  c
B D            Green monkey  c
B D                Marmoset  c
B D                Bushbaby  t
               Prairie vole  c
B D          Naked mole-rat  c
                 Chinchilla  c
B D                  Alpaca  c
             Bactrian camel  c
B D                 Dolphin  c
               Killer whale  c
           Tibetan antelope  c
B D                     Cow  c
B D                   Sheep  c
              Domestic goat  c
B D                   Horse  c
B D                Elephant  t
B D               Armadillo  t
            Golden hamster  =
    Lesser Egyptian jerboa  =
B D                     Rat  =
B D                   Mouse  =
B D                    Pika  =
B D                   Shrew  =
B D              Guinea pig  =
B D                  Rabbit  =
                  Aardvark  =
B D                  Rhesus  -
          Cape golden mole  =
B D                     Pig  =
B D                 Megabat  =
          Brush-tailed rat  =
       Cape elephant shrew  =
        Chinese tree shrew  =
B D                 Manatee  =
B D         Chinese hamster  =
B D                  Tenrec  =
B D                     Cat  =
              Weddell seal  =
B D                 Ferret   =
           Star-nosed mole  =
             Big brown bat  -
            Pacific walrus  =
B D                   Panda  =
B D                     Dog  =
          Black flying-fox  =
B D        White rhinoceros  =
B D                Squirrel  =
      David's myotis (bat)  -
B D                Microbat  =
B D         Squirrel monkey  =

Inserts between block 32 and 33 in window
B D         Naked mole-rat 24bp
                Chinchilla 24bp
B D               Elephant 246bp

Alignment block 33 of 496 in window, 111857192 - 111857192, 1 bps 
B D                   Human  -c
B D                   Chimp  -t
B D                 Gorilla  -c
B D               Orangutan  -c
B D                  Gibbon  -c
B D                  Rhesus  -c
B D     Crab-eating macaque  -c
B D                  Baboon  -c
B D            Green monkey  -c
B D                Marmoset  -c
B D                Bushbaby  -c
               Prairie vole  -c
B D                  Alpaca  -c
             Bactrian camel  -c
B D                 Dolphin  -c
               Killer whale  -c
           Tibetan antelope  -c
B D                     Cow  -c
B D                   Sheep  -c
              Domestic goat  -c
B D                   Horse  -c
B D               Armadillo  a-
            Golden hamster  ==
    Lesser Egyptian jerboa  ==
B D                     Rat  ==
B D                   Mouse  ==
B D                    Pika  ==
B D                   Shrew  ==
B D              Guinea pig  ==
B D                  Rabbit  ==
                  Aardvark  ==
          Cape golden mole  ==
B D                     Pig  ==
B D                 Megabat  ==
                Chinchilla  ==
B D          Naked mole-rat  ==
          Brush-tailed rat  ==
       Cape elephant shrew  ==
        Chinese tree shrew  ==
B D                 Manatee  ==
B D                Elephant  ==
B D         Chinese hamster  ==
B D                  Tenrec  ==
B D                     Cat  ==
              Weddell seal  ==
B D                 Ferret   ==
           Star-nosed mole  ==
             Big brown bat  --
            Pacific walrus  ==
B D                   Panda  ==
B D                     Dog  ==
          Black flying-fox  ==
B D        White rhinoceros  ==
B D                Squirrel  ==
      David's myotis (bat)  --
B D                Microbat  ==
B D         Squirrel monkey  ==

Inserts between block 33 and 34 in window
B D                 Alpaca 61bp
B D                Dolphin 1769bp
              Killer whale 1771bp
B D                  Horse 25bp

Alignment block 34 of 496 in window, 111857193 - 111857193, 1 bps 
B D                   Human  g
B D                   Chimp  g
B D                 Gorilla  g
B D               Orangutan  g
B D                  Gibbon  g
B D                  Rhesus  g
B D     Crab-eating macaque  g
B D                  Baboon  g
B D            Green monkey  g
B D                Marmoset  a
B D                Bushbaby  a
B D                     Cow  g
B D                   Horse  g
B D               Armadillo  a
            Golden hamster  =
    Lesser Egyptian jerboa  =
B D                     Rat  =
              Prairie vole  -
B D                   Mouse  =
B D                    Pika  =
B D                   Shrew  =
B D              Guinea pig  =
B D                  Rabbit  =
                  Aardvark  =
          Cape golden mole  =
B D                     Pig  =
B D                 Megabat  =
B D                 Dolphin  =
                Chinchilla  =
B D          Naked mole-rat  =
          Brush-tailed rat  =
       Cape elephant shrew  =
        Chinese tree shrew  =
B D                 Manatee  =
B D                Elephant  =
B D         Chinese hamster  =
B D                  Tenrec  =
B D                     Cat  =
              Weddell seal  =
B D                 Ferret   =
             Domestic goat  -
B D                   Sheep  -
          Tibetan antelope  -
           Star-nosed mole  =
            Bactrian camel  -
B D                  Alpaca  =
             Big brown bat  -
            Pacific walrus  =
B D                   Panda  =
              Killer whale  =
B D                     Dog  =
          Black flying-fox  =
B D        White rhinoceros  =
B D                Squirrel  =
      David's myotis (bat)  -
B D                Microbat  =
B D         Squirrel monkey  =

Inserts between block 34 and 35 in window
B D               Bushbaby 75bp
B D                    Cow 3bp

Alignment block 35 of 496 in window, 111857194 - 111857200, 7 bps 
B D                   Human  gccaggc
B D                   Chimp  gccaggc
B D                 Gorilla  gccaggc
B D               Orangutan  gccaggc
B D                  Gibbon  tccaggc
B D                  Rhesus  gccagtc
B D     Crab-eating macaque  gccagtc
B D                  Baboon  gccaggc
B D            Green monkey  gccaggc
B D                Marmoset  gccagtc
B D                   Horse  ggctggc
B D               Armadillo  gttaaaa
            Golden hamster  =======
    Lesser Egyptian jerboa  =======
B D                     Rat  =======
              Prairie vole  -------
B D                   Mouse  =======
B D                    Pika  =======
B D                   Shrew  =======
B D              Guinea pig  =======
B D                  Rabbit  =======
                  Aardvark  =======
          Cape golden mole  =======
B D                     Pig  =======
B D                 Megabat  =======
B D                 Dolphin  =======
                Chinchilla  =======
B D          Naked mole-rat  =======
          Brush-tailed rat  =======
       Cape elephant shrew  =======
        Chinese tree shrew  =======
B D                 Manatee  =======
B D                Elephant  =======
B D         Chinese hamster  =======
B D                  Tenrec  =======
B D                     Cat  =======
B D                Bushbaby  =======
              Weddell seal  =======
B D                 Ferret   =======
             Domestic goat  -------
B D                   Sheep  -------
          Tibetan antelope  -------
           Star-nosed mole  =======
            Bactrian camel  -------
B D                  Alpaca  =======
             Big brown bat  -------
            Pacific walrus  =======
B D                   Panda  =======
B D                     Cow  =======
              Killer whale  =======
B D                     Dog  =======
          Black flying-fox  =======
B D        White rhinoceros  =======
B D                Squirrel  =======
      David's myotis (bat)  -------
B D                Microbat  =======
B D         Squirrel monkey  =======

Inserts between block 35 and 36 in window
B D              Armadillo 215bp

Alignment block 36 of 496 in window, 111857201 - 111857211, 11 bps 
B D                   Human  acggtggc----------------------tca
B D                   Chimp  gcggtggc----------------------tca
B D                 Gorilla  acggtggc----------------------tca
B D               Orangutan  acggtggc----------------------tca
B D                  Gibbon  acggtggcttactcctgtaatcctttgggatca
B D                  Rhesus  atggtggctcatgcctgtagtcctttgggatca
B D     Crab-eating macaque  atggtggctcatgcctgtagtcctttgggatca
B D                  Baboon  atggtggttcacgcctgtagtcctttgggatca
B D            Green monkey  atggtggctcgcgcctgtagtcctttgggatca
B D                Marmoset  atggtggc-------------------------
             Bactrian camel  ------------------------------aca
B D                   Horse  ccggtggt----------------------gca
            Golden hamster  =================================
    Lesser Egyptian jerboa  =================================
B D                     Rat  =================================
              Prairie vole  ---------------------------------
B D                   Mouse  =================================
B D                    Pika  =================================
B D                   Shrew  =================================
B D              Guinea pig  =================================
B D                  Rabbit  =================================
                  Aardvark  =================================
          Cape golden mole  =================================
B D                     Pig  =================================
B D                 Megabat  =================================
B D                 Dolphin  =================================
                Chinchilla  =================================
B D          Naked mole-rat  =================================
          Brush-tailed rat  =================================
       Cape elephant shrew  =================================
        Chinese tree shrew  =================================
B D                 Manatee  =================================
B D                Elephant  =================================
B D         Chinese hamster  =================================
B D                  Tenrec  =================================
B D                     Cat  =================================
B D                Bushbaby  =================================
              Weddell seal  =================================
B D                 Ferret   =================================
             Domestic goat  ---------------------------------
B D                   Sheep  ---------------------------------
          Tibetan antelope  ---------------------------------
           Star-nosed mole  =================================
B D                  Alpaca  =================================
             Big brown bat  ---------------------------------
            Pacific walrus  =================================
B D                   Panda  =================================
B D                     Cow  =================================
              Killer whale  =================================
B D                     Dog  =================================
          Black flying-fox  =================================
B D        White rhinoceros  =================================
B D                Squirrel  =================================
      David's myotis (bat)  ---------------------------------
B D                Microbat  =================================
B D         Squirrel monkey  =================================
B D               Armadillo  =================================

Inserts between block 36 and 37 in window
            Bactrian camel 2bp
B D                  Horse 182bp

Alignment block 37 of 496 in window, 111857212 - 111857283, 72 bps 
B D                   Human  cgcctgtaatcctttggcactttgggaggcggcggcgggcggatcatttgag---gtcaggagtttgaga
B D                   Chimp  cgcctgtaatcctttgacactttgggaggcggcgg---gcagatcatttgag---gtcaggagtttgaga
B D                 Gorilla  cgccggtaatcctttggcactttgggaggcggcggcgggcggatcatttgag---gtcaggagtttgaga
B D               Orangutan  tgcctgtaatccttcggcactttgggaggcggtggggggcggatca-----------------tttgaga
B D                  Gibbon  cccctgtaatcctttggcactttgggaggtggcggcgggcagatcatttgag---gtcaggagtttgaga
B D                  Rhesus  ggcctgtaatcctgtggcattttaggaggctgctgcaggcggatcatttgaagtcgtcaggagtttgaga
B D     Crab-eating macaque  ggcctgtaatcctgtggcattttgggaggctgctgcaggcggatcatttgaagtcgtcaggagtttgaga
B D                  Baboon  ggcctgtaatcctgtggcattttgggaggctgctgccggcggatcatttgaagtcgtcaggagttggaga
B D            Green monkey  ggcctgtaatcctgtggcattttgggaggctgctgtaggcggatcatttgaagtcgtcaggagttcgaga
B D                Marmoset  ----------------------------------------tgatcaattgag---gtcagtagttcaaga
             Bactrian camel  --------------------------------------------------------------gtttaaaa
            Golden hamster  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
B D                     Rat  ======================================================================
              Prairie vole  ----------------------------------------------------------------------
B D                   Mouse  ======================================================================
B D                    Pika  ======================================================================
B D                   Shrew  ======================================================================
B D              Guinea pig  ======================================================================
B D                  Rabbit  ======================================================================
                  Aardvark  ======================================================================
          Cape golden mole  ======================================================================
B D                     Pig  ======================================================================
B D                 Megabat  ======================================================================
B D                 Dolphin  ======================================================================
                Chinchilla  ======================================================================
B D          Naked mole-rat  ======================================================================
          Brush-tailed rat  ======================================================================
       Cape elephant shrew  ======================================================================
        Chinese tree shrew  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
B D         Chinese hamster  ======================================================================
B D                  Tenrec  ======================================================================
B D                     Cat  ======================================================================
B D                Bushbaby  ======================================================================
              Weddell seal  ======================================================================
B D                 Ferret   ======================================================================
             Domestic goat  ----------------------------------------------------------------------
B D                   Sheep  ----------------------------------------------------------------------
          Tibetan antelope  ----------------------------------------------------------------------
           Star-nosed mole  ======================================================================
B D                  Alpaca  ======================================================================
             Big brown bat  ----------------------------------------------------------------------
            Pacific walrus  ======================================================================
B D                   Panda  ======================================================================
B D                     Cow  ======================================================================
              Killer whale  ======================================================================
B D                     Dog  ======================================================================
          Black flying-fox  ======================================================================
B D        White rhinoceros  ======================================================================
B D                   Horse  ======================================================================
B D                Squirrel  ======================================================================
      David's myotis (bat)  ----------------------------------------------------------------------
B D                Microbat  ======================================================================
B D         Squirrel monkey  ======================================================================
B D               Armadillo  ======================================================================

                      Human  ccagt
                      Chimp  ccagt
                    Gorilla  ccagt
                  Orangutan  ccagt
                     Gibbon  ccagt
                     Rhesus  cctgt
        Crab-eating macaque  cctgt
                     Baboon  cctgt
               Green monkey  cctgt
                   Marmoset  ccagc
             Bactrian camel  ccagt
             Golden hamster  =====
     Lesser Egyptian jerboa  =====
                        Rat  =====
               Prairie vole  -----
                      Mouse  =====
                       Pika  =====
                      Shrew  =====
                 Guinea pig  =====
                     Rabbit  =====
                   Aardvark  =====
           Cape golden mole  =====
                        Pig  =====
                    Megabat  =====
                    Dolphin  =====
                 Chinchilla  =====
             Naked mole-rat  =====
           Brush-tailed rat  =====
        Cape elephant shrew  =====
         Chinese tree shrew  =====
                    Manatee  =====
                   Elephant  =====
            Chinese hamster  =====
                     Tenrec  =====
                        Cat  =====
                   Bushbaby  =====
               Weddell seal  =====
                    Ferret   =====
              Domestic goat  -----
                      Sheep  -----
           Tibetan antelope  -----
            Star-nosed mole  =====
                     Alpaca  =====
              Big brown bat  -----
             Pacific walrus  =====
                      Panda  =====
                        Cow  =====
               Killer whale  =====
                        Dog  =====
           Black flying-fox  =====
           White rhinoceros  =====
                      Horse  =====
                   Squirrel  =====
       David's myotis (bat)  -----
                   Microbat  =====
            Squirrel monkey  =====
                  Armadillo  =====

Inserts between block 37 and 38 in window
            Bactrian camel 42bp

Alignment block 38 of 496 in window, 111857284 - 111857299, 16 bps 
B D                   Human  ctggccatcatggtga
B D                   Chimp  ctggccaacatggtga
B D                 Gorilla  ctggccaacatggtga
B D               Orangutan  ctggccaacatggtga
B D                  Gibbon  ctggccaacatgggga
B D                  Rhesus  ctgtccaacaaggtga
B D     Crab-eating macaque  ctgtccaacaaggtga
B D                  Baboon  ctgtccaacaaggtga
B D            Green monkey  ctgtccaacaaggtga
B D                Marmoset  ctggccaacatggtga
            Golden hamster  ================
    Lesser Egyptian jerboa  ================
B D                     Rat  ================
              Prairie vole  ----------------
B D                   Mouse  ================
B D                    Pika  ================
B D                   Shrew  ================
B D              Guinea pig  ================
B D                  Rabbit  ================
                  Aardvark  ================
          Cape golden mole  ================
B D                     Pig  ================
B D                 Megabat  ================
B D                 Dolphin  ================
                Chinchilla  ================
B D          Naked mole-rat  ================
          Brush-tailed rat  ================
       Cape elephant shrew  ================
        Chinese tree shrew  ================
B D                 Manatee  ================
B D                Elephant  ================
B D         Chinese hamster  ================
B D                  Tenrec  ================
B D                     Cat  ================
B D                Bushbaby  ================
              Weddell seal  ================
B D                 Ferret   ================
             Domestic goat  ----------------
B D                   Sheep  ----------------
          Tibetan antelope  ----------------
           Star-nosed mole  ================
            Bactrian camel  ================
B D                  Alpaca  ================
             Big brown bat  ----------------
            Pacific walrus  ================
B D                   Panda  ================
B D                     Cow  ================
              Killer whale  ================
B D                     Dog  ================
          Black flying-fox  ================
B D        White rhinoceros  ================
B D                   Horse  ================
B D                Squirrel  ================
      David's myotis (bat)  ----------------
B D                Microbat  ================
B D         Squirrel monkey  ================
B D               Armadillo  ================

Alignment block 39 of 496 in window, 111857300 - 111857322, 23 bps 
B D                   Human  aaccccgtctctactaaaaatac
B D                   Chimp  aaccccgtctctactaaaaatac
B D                 Gorilla  aaccccgtctctactaaaaatac
B D               Orangutan  aaccccgtctctactaaaaatac
B D                  Gibbon  aaccccgtctctactaaaaatac
B D                  Rhesus  aatcccatctctactaaaaatac
B D     Crab-eating macaque  aaccccatctctactaaaaatac
B D                  Baboon  aaccccatctctactaaaaatac
B D            Green monkey  aaccccatctctactaaaaatac
B D                Marmoset  aaccccgtgtctactaaaaatac
B D                 Manatee  aactcgatggcacccaaaaacat
            Golden hamster  =======================
    Lesser Egyptian jerboa  =======================
B D                     Rat  =======================
              Prairie vole  -----------------------
B D                   Mouse  =======================
B D                    Pika  =======================
B D                   Shrew  =======================
B D              Guinea pig  =======================
B D                  Rabbit  =======================
                  Aardvark  =======================
          Cape golden mole  =======================
B D                     Pig  =======================
B D                 Megabat  =======================
B D                 Dolphin  =======================
                Chinchilla  =======================
B D          Naked mole-rat  =======================
          Brush-tailed rat  =======================
       Cape elephant shrew  =======================
        Chinese tree shrew  =======================
B D                Elephant  =======================
B D         Chinese hamster  =======================
B D                  Tenrec  =======================
B D                     Cat  =======================
B D                Bushbaby  =======================
              Weddell seal  =======================
B D                 Ferret   =======================
             Domestic goat  -----------------------
B D                   Sheep  -----------------------
          Tibetan antelope  -----------------------
           Star-nosed mole  =======================
            Bactrian camel  =======================
B D                  Alpaca  =======================
             Big brown bat  -----------------------
            Pacific walrus  =======================
B D                   Panda  =======================
B D                     Cow  =======================
              Killer whale  =======================
B D                     Dog  =======================
          Black flying-fox  =======================
B D        White rhinoceros  =======================
B D                   Horse  =======================
B D                Squirrel  =======================
      David's myotis (bat)  -----------------------
B D                Microbat  =======================
B D         Squirrel monkey  =======================
B D               Armadillo  =======================

Alignment block 40 of 496 in window, 111857323 - 111857332, 10 bps 
B D                   Human  aaaaattagc
B D                   Chimp  aaaaattagc
B D                 Gorilla  aaaaattagc
B D               Orangutan  aaaaattagc
B D                  Gibbon  aaaaattagc
B D                  Rhesus  aaaaattagc
B D     Crab-eating macaque  aaaaattagc
B D                  Baboon  aaaaattaga
B D            Green monkey  aaaaattagc
B D                Marmoset  aaaaattatc
B D                Squirrel  aaaaaatagc
B D                 Manatee  acacataagc
            Golden hamster  ==========
    Lesser Egyptian jerboa  ==========
B D                     Rat  ==========
              Prairie vole  ----------
B D                   Mouse  ==========
B D                    Pika  ==========
B D                   Shrew  ==========
B D              Guinea pig  ==========
B D                  Rabbit  ==========
                  Aardvark  ==========
          Cape golden mole  ==========
B D                     Pig  ==========
B D                 Megabat  ==========
B D                 Dolphin  ==========
                Chinchilla  ==========
B D          Naked mole-rat  ==========
          Brush-tailed rat  ==========
       Cape elephant shrew  ==========
        Chinese tree shrew  ==========
B D                Elephant  ==========
B D         Chinese hamster  ==========
B D                  Tenrec  ==========
B D                     Cat  ==========
B D                Bushbaby  ==========
              Weddell seal  ==========
B D                 Ferret   ==========
             Domestic goat  ----------
B D                   Sheep  ----------
          Tibetan antelope  ----------
           Star-nosed mole  ==========
            Bactrian camel  ==========
B D                  Alpaca  ==========
             Big brown bat  ----------
            Pacific walrus  ==========
B D                   Panda  ==========
B D                     Cow  ==========
              Killer whale  ==========
B D                     Dog  ==========
          Black flying-fox  ==========
B D        White rhinoceros  ==========
B D                   Horse  ==========
      David's myotis (bat)  ----------
B D                Microbat  ==========
B D         Squirrel monkey  ==========
B D               Armadillo  ==========

Inserts between block 40 and 41 in window
B D                Manatee 1bp

Alignment block 41 of 496 in window, 111857333 - 111857411, 79 bps 
B D                   Human  caggcatggtggcac-gcgtctgtagtcccagctgct--ttggaagctgaggcaggagaatcgcttgaac
B D                   Chimp  caggcatggtggcac-gcgtctgtagtcccagctgct--ttggaagctgaggcaggagaatcgcttgaac
B D                 Gorilla  caggcatggtggcac-acgtctgtagtcccagctgct--ttggaagcggaggcaggagaatcgcttgaac
B D               Orangutan  caggcatggtggcat-gcgtctgtagtcccagctact--tgggaagctgaggcaggagaatcgcttgaac
B D                  Gibbon  caggcatggtggcac-gcgtctatagtcccaggtact--tgagaaggtgaggcaggagaatcgcttgaac
B D                  Rhesus  cagacatggtggcac-gcatctgtagtcccagctact--cggaaggctaaggcaggagaatcgcttgaac
B D     Crab-eating macaque  cagacatggtggcac-gcatctgtagtcccagctact--cggaaggctaaggcaggagaatcgcttgaac
B D                  Baboon  cagacatggtggcac-acgtctgtagtcccagctact--cggaaggctgaggcaggagaatcgcttgaac
B D            Green monkey  cagacatggtggcac-gcgtctgtagtcccagctact--cacaaggctgaggcaggagaatggcttgaac
B D                Marmoset  caggcatggtgacat-gtgcctgtagtcttagctact--caggaggctgaggcaagaaaattgcttgaac
B D                Squirrel  c---------------------------------------------------------------------
B D                Elephant  gagccctggtggtatagtggttaagctcttggctggtagccgaaaactt-ggca--------gtttgaac
B D                 Manatee  aagccctggtggtacagtggttaagctctcagctgctaactgaaaggtt-ggca--------gtttaaac
            Golden hamster  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
B D                     Rat  ======================================================================
              Prairie vole  ----------------------------------------------------------------------
B D                   Mouse  ======================================================================
B D                    Pika  ======================================================================
B D                   Shrew  ======================================================================
B D              Guinea pig  ======================================================================
B D                  Rabbit  ======================================================================
                  Aardvark  ======================================================================
          Cape golden mole  ======================================================================
B D                     Pig  ======================================================================
B D                 Megabat  ======================================================================
B D                 Dolphin  ======================================================================
                Chinchilla  ======================================================================
B D          Naked mole-rat  ======================================================================
          Brush-tailed rat  ======================================================================
       Cape elephant shrew  ======================================================================
        Chinese tree shrew  ======================================================================
B D         Chinese hamster  ======================================================================
B D                  Tenrec  ======================================================================
B D                     Cat  ======================================================================
B D                Bushbaby  ======================================================================
              Weddell seal  ======================================================================
B D                 Ferret   ======================================================================
             Domestic goat  ----------------------------------------------------------------------
B D                   Sheep  ----------------------------------------------------------------------
          Tibetan antelope  ----------------------------------------------------------------------
           Star-nosed mole  ======================================================================
            Bactrian camel  ======================================================================
B D                  Alpaca  ======================================================================
             Big brown bat  ----------------------------------------------------------------------
            Pacific walrus  ======================================================================
B D                   Panda  ======================================================================
B D                     Cow  ======================================================================
              Killer whale  ======================================================================
B D                     Dog  ======================================================================
          Black flying-fox  ======================================================================
B D        White rhinoceros  ======================================================================
B D                   Horse  ======================================================================
      David's myotis (bat)  ----------------------------------------------------------------------
B D                Microbat  ======================================================================
B D         Squirrel monkey  ======================================================================
B D               Armadillo  ======================================================================

                      Human  ccatgag----------gcaga----
                      Chimp  ccatgag----------gcaga----
                    Gorilla  ccatgag----------gcaga----
                  Orangutan  ccatgag----------gcaga----
                     Gibbon  ctatgag----------gcaga----
                     Rhesus  ccaagag-------------------
        Crab-eating macaque  ccaagag-------------------
                     Baboon  ccaagag-------------------
               Green monkey  ccaagag-------------------
                   Marmoset  ccaaggg----------gtgga----
                   Squirrel  --------------------------
                   Elephant  ccaccagccgctctgtgggagaaaga
                    Manatee  ccaccagctgctctgtgggagaaaga
             Golden hamster  ==========================
     Lesser Egyptian jerboa  ==========================
                        Rat  ==========================
               Prairie vole  --------------------------
                      Mouse  ==========================
                       Pika  ==========================
                      Shrew  ==========================
                 Guinea pig  ==========================
                     Rabbit  ==========================
                   Aardvark  ==========================
           Cape golden mole  ==========================
                        Pig  ==========================
                    Megabat  ==========================
                    Dolphin  ==========================
                 Chinchilla  ==========================
             Naked mole-rat  ==========================
           Brush-tailed rat  ==========================
        Cape elephant shrew  ==========================
         Chinese tree shrew  ==========================
            Chinese hamster  ==========================
                     Tenrec  ==========================
                        Cat  ==========================
                   Bushbaby  ==========================
               Weddell seal  ==========================
                    Ferret   ==========================
              Domestic goat  --------------------------
                      Sheep  --------------------------
           Tibetan antelope  --------------------------
            Star-nosed mole  ==========================
             Bactrian camel  ==========================
                     Alpaca  ==========================
              Big brown bat  --------------------------
             Pacific walrus  ==========================
                      Panda  ==========================
                        Cow  ==========================
               Killer whale  ==========================
                        Dog  ==========================
           Black flying-fox  ==========================
           White rhinoceros  ==========================
                      Horse  ==========================
       David's myotis (bat)  --------------------------
                   Microbat  ==========================
            Squirrel monkey  ==========================
                  Armadillo  ==========================

Alignment block 42 of 496 in window, 111857412 - 111857471, 60 bps 
B D                   Human  ggttgcagtgagcccagatcacgccattacaatccag-----cctgagtgacatagcgagac--tgt
B D                   Chimp  ggttgcagtgagcccagatcacgccattacaatccag-----cctgagtgacatagcgagac--tgt
B D                 Gorilla  ggttgcagtgagcccagaacacgccattacaatccag-----cctgagtgacatagcgagac--tgt
B D               Orangutan  ggttgcagtgagcccagatcacgccattacaatccag-----cctgagtgacatagcgagac--tgt
B D                  Gibbon  ggttgcagtgagcccagatcacgccattataatccag-----cctgagtgacatagcaagac--agt
B D                  Rhesus  ----gcagtgagcccagatcatgccattacaatcttg-----cctgggtgacacagccagactctgt
B D     Crab-eating macaque  ----gcagtgagcccagatcatgccattacaatcttg-----cctgggtgacacagccagactctgt
B D                  Baboon  ----gcagtgagcccagatcatgccattacaatcttg-----cctgggtgacacagccagactctgt
B D            Green monkey  ----gcagtgagcccagatcatgtcattacaatcatg-----cctgggtgacacagccagactgtgt
B D                Marmoset  ggttgcagtgagccgagatcgtgccattacaatccag-----cctgggtgacatagtgagactctgt
B D                Squirrel  -------------------cacattatt---------------------------------------
B D                   Horse  ggcagtagttagctcagagctaatcttc---------------------------------------
B D                Elephant  tgtggcagtctgtttccattatg--attatagccctggaaaccctgtggggcaggtctagtc--tgt
B D                 Manatee  tgtggcagtctgcttccgtaaca--attacagccttgaaaaccttgtggggcagttctactc--tgt
            Golden hamster  ===================================================================
    Lesser Egyptian jerboa  ===================================================================
B D                     Rat  ===================================================================
              Prairie vole  -------------------------------------------------------------------
B D                   Mouse  ===================================================================
B D                    Pika  ===================================================================
B D                   Shrew  ===================================================================
B D              Guinea pig  ===================================================================
B D                  Rabbit  ===================================================================
                  Aardvark  ===================================================================
          Cape golden mole  ===================================================================
B D                     Pig  ===================================================================
B D                 Megabat  ===================================================================
B D                 Dolphin  ===================================================================
                Chinchilla  ===================================================================
B D          Naked mole-rat  ===================================================================
          Brush-tailed rat  ===================================================================
       Cape elephant shrew  ===================================================================
        Chinese tree shrew  ===================================================================
B D         Chinese hamster  ===================================================================
B D                  Tenrec  ===================================================================
B D                     Cat  ===================================================================
B D                Bushbaby  ===================================================================
              Weddell seal  ===================================================================
B D                 Ferret   ===================================================================
             Domestic goat  -------------------------------------------------------------------
B D                   Sheep  -------------------------------------------------------------------
          Tibetan antelope  -------------------------------------------------------------------
           Star-nosed mole  ===================================================================
            Bactrian camel  ===================================================================
B D                  Alpaca  ===================================================================
             Big brown bat  -------------------------------------------------------------------
            Pacific walrus  ===================================================================
B D                   Panda  ===================================================================
B D                     Cow  ===================================================================
              Killer whale  ===================================================================
B D                     Dog  ===================================================================
          Black flying-fox  ===================================================================
B D        White rhinoceros  ===================================================================
      David's myotis (bat)  -------------------------------------------------------------------
B D                Microbat  ===================================================================
B D         Squirrel monkey  ===================================================================
B D               Armadillo  ===================================================================

Alignment block 43 of 496 in window, 111857472 - 111857474, 3 bps 
B D                   Human  -ctc
B D                   Chimp  -ctc
B D                 Gorilla  -ctc
B D               Orangutan  -ctc
B D                  Gibbon  -ctc
B D                  Rhesus  -ctc
B D     Crab-eating macaque  -ctc
B D                  Baboon  -ctc
B D            Green monkey  -ctc
B D                Marmoset  -ctc
B D                     Pig  -ctt
B D                   Horse  -cta
B D                Elephant  cct-
B D                 Manatee  cct-
            Golden hamster  ====
    Lesser Egyptian jerboa  ====
B D                     Rat  ====
              Prairie vole  ----
B D                   Mouse  ====
B D                    Pika  ====
B D                   Shrew  ====
B D              Guinea pig  ====
B D                  Rabbit  ====
                  Aardvark  ====
          Cape golden mole  ====
B D                 Megabat  ====
B D                 Dolphin  ====
                Chinchilla  ====
B D          Naked mole-rat  ====
          Brush-tailed rat  ====
       Cape elephant shrew  ====
        Chinese tree shrew  ====
B D         Chinese hamster  ====
B D                  Tenrec  ====
B D                     Cat  ====
B D                Bushbaby  ====
              Weddell seal  ====
B D                 Ferret   ====
             Domestic goat  ----
B D                   Sheep  ----
          Tibetan antelope  ----
           Star-nosed mole  ====
            Bactrian camel  ====
B D                  Alpaca  ====
             Big brown bat  ----
            Pacific walrus  ====
B D                   Panda  ====
B D                     Cow  ====
              Killer whale  ====
B D                     Dog  ====
          Black flying-fox  ====
B D        White rhinoceros  ====
B D                Squirrel  ----
      David's myotis (bat)  ----
B D                Microbat  ====
B D         Squirrel monkey  ====
B D               Armadillo  ====

Inserts between block 43 and 44 in window
B D    Crab-eating macaque 8bp
B D                 Baboon 8bp
B D           Green monkey 10bp
B D               Elephant 25bp

Alignment block 44 of 496 in window, 111857475 - 111857486, 12 bps 
B D                   Human  aaaaaaaaaaaa
B D                   Chimp  aaaaaaaaaaaa
B D                 Gorilla  aaaaaaaaaaaa
B D               Orangutan  aaaaaaaaaaaa
B D                  Gibbon  aaaaaaaaaaaa
B D                  Rhesus  aaaaaaaaaaaa
B D     Crab-eating macaque  aaaaaaaaaaaa
B D                  Baboon  aaaaaaaaaaaa
B D            Green monkey  aaaaaaaaaaaa
B D                Marmoset  aaaaa-------
B D                     Pig  gaatagtgatgg
B D                   Horse  aaaaaaaaaaaa
            Golden hamster  ============
    Lesser Egyptian jerboa  ============
B D                     Rat  ============
              Prairie vole  ------------
B D                   Mouse  ============
B D                    Pika  ============
B D                   Shrew  ============
B D              Guinea pig  ============
B D                  Rabbit  ============
                  Aardvark  ============
          Cape golden mole  ============
B D                 Megabat  ============
B D                 Dolphin  ============
                Chinchilla  ============
B D          Naked mole-rat  ============
          Brush-tailed rat  ============
       Cape elephant shrew  ============
        Chinese tree shrew  ============
B D                 Manatee  ------------
B D                Elephant  ============
B D         Chinese hamster  ============
B D                  Tenrec  ============
B D                     Cat  ============
B D                Bushbaby  ============
              Weddell seal  ============
B D                 Ferret   ============
             Domestic goat  ------------
B D                   Sheep  ------------
          Tibetan antelope  ------------
           Star-nosed mole  ============
            Bactrian camel  ============
B D                  Alpaca  ============
             Big brown bat  ------------
            Pacific walrus  ============
B D                   Panda  ============
B D                     Cow  ============
              Killer whale  ============
B D                     Dog  ============
          Black flying-fox  ============
B D        White rhinoceros  ============
B D                Squirrel  ------------
      David's myotis (bat)  ------------
B D                Microbat  ============
B D         Squirrel monkey  ============
B D               Armadillo  ============

Inserts between block 44 and 45 in window
B D                Gorilla 6bp
B D                 Rhesus 6bp
B D    Crab-eating macaque 6bp
B D                 Baboon 6bp
B D           Green monkey 6bp

Alignment block 45 of 496 in window, 111857487 - 111857490, 4 bps 
B D                   Human  aaaa
B D                 Gorilla  aaaa
B D               Orangutan  -aaa
B D                  Rhesus  agag
B D     Crab-eating macaque  aaag
B D                  Baboon  agag
B D            Green monkey  aaaa
            Golden hamster  ====
    Lesser Egyptian jerboa  ====
B D                     Rat  ====
              Prairie vole  ----
B D                   Mouse  ====
B D                    Pika  ====
B D                   Shrew  ====
B D              Guinea pig  ====
B D                  Rabbit  ====
                  Aardvark  ====
          Cape golden mole  ====
B D                     Pig  ----
B D                 Megabat  ====
B D                 Dolphin  ====
B D                  Gibbon  ----
                Chinchilla  ====
B D          Naked mole-rat  ====
          Brush-tailed rat  ====
       Cape elephant shrew  ====
        Chinese tree shrew  ====
B D                 Manatee  ----
B D                Elephant  ====
B D         Chinese hamster  ====
B D                  Tenrec  ====
B D                     Cat  ====
B D                Bushbaby  ====
              Weddell seal  ====
B D                 Ferret   ====
             Domestic goat  ----
B D                   Sheep  ----
          Tibetan antelope  ----
           Star-nosed mole  ====
            Bactrian camel  ====
B D                  Alpaca  ====
             Big brown bat  ----
            Pacific walrus  ====
B D                   Panda  ====
B D                     Cow  ====
              Killer whale  ====
B D                     Dog  ====
          Black flying-fox  ====
B D        White rhinoceros  ====
B D                   Horse  ----
B D                Squirrel  ----
      David's myotis (bat)  ----
B D                Microbat  ====
B D         Squirrel monkey  ====
B D                Marmoset  ----
B D               Armadillo  ====
B D                   Chimp  ----

Alignment block 46 of 496 in window, 111857491 - 111857518, 28 bps 
B D                   Human  ---------agaaaagaaaagaaagaaagaaaaaaca
B D                   Chimp  ---------------gaaaagaaagaaagaaaaaaca
B D                 Gorilla  ---------aggaaagaaaagaaagaaagaaaaaaca
B D               Orangutan  ---------aaaaaagaaaagaaagaaagaaaaaaca
B D                  Gibbon  ----------agaaaaaaagaaaagaaagaaaaaaca
B D                  Rhesus  ---------aaaaaagaaaagaaagaaagaaaaaaca
B D     Crab-eating macaque  ---------aaaaaagaaaagaaagaaagaaaaaaca
B D                  Baboon  ---------aaaaaagaaaagaaagaaagaaaaaaca
B D            Green monkey  ---------agagaaaaaagaaaagaaagaaaaaaca
B D                Marmoset  ---------------gaaaagaaaagaaaagaaaac-
B D                     Pig  ----------aaaatgatctgggcaaaagaatgaatg
B D        White rhinoceros  ----------aaaa-------ggaaaagaaaaaaact
B D                 Manatee  --gtagggttatgt--------gagtcagaatcgaca
                   Aardvark  agaaaagtctaggcaaaaggaagattaaaaaaaaaat
            Golden hamster  =====================================
    Lesser Egyptian jerboa  =====================================
B D                     Rat  =====================================
              Prairie vole  -------------------------------------
B D                   Mouse  =====================================
B D                    Pika  =====================================
B D                   Shrew  =====================================
B D              Guinea pig  =====================================
B D                  Rabbit  =====================================
          Cape golden mole  =====================================
B D                 Megabat  =====================================
B D                 Dolphin  =====================================
                Chinchilla  =====================================
B D          Naked mole-rat  =====================================
          Brush-tailed rat  =====================================
       Cape elephant shrew  =====================================
        Chinese tree shrew  =====================================
B D                Elephant  =====================================
B D         Chinese hamster  =====================================
B D                  Tenrec  =====================================
B D                     Cat  =====================================
B D                Bushbaby  =====================================
              Weddell seal  =====================================
B D                 Ferret   =====================================
             Domestic goat  -------------------------------------
B D                   Sheep  -------------------------------------
          Tibetan antelope  -------------------------------------
           Star-nosed mole  =====================================
            Bactrian camel  =====================================
B D                  Alpaca  =====================================
             Big brown bat  -------------------------------------
            Pacific walrus  =====================================
B D                   Panda  =====================================
B D                     Cow  =====================================
              Killer whale  =====================================
B D                     Dog  =====================================
          Black flying-fox  =====================================
B D                   Horse  -------------------------------------
B D                Squirrel  -------------------------------------
      David's myotis (bat)  -------------------------------------
B D                Microbat  =====================================
B D         Squirrel monkey  =====================================
B D               Armadillo  =====================================

Alignment block 47 of 496 in window, 111857519 - 111857522, 4 bps 
B D                   Human  acat
B D                   Chimp  acat
B D                 Gorilla  acat
B D               Orangutan  acat
B D                  Gibbon  acat
B D                  Rhesus  acat
B D     Crab-eating macaque  acat
B D                  Baboon  acat
B D            Green monkey  acat
B D                Marmoset  acat
               Prairie vole  aaat
           Tibetan antelope  atat
B D                   Sheep  atat
              Domestic goat  atat
B D        White rhinoceros  gcat
B D                 Manatee  gcat
                   Aardvark  acaa
            Golden hamster  ====
    Lesser Egyptian jerboa  ====
B D                     Rat  ====
B D                   Mouse  ====
B D                    Pika  ====
B D                   Shrew  ====
B D              Guinea pig  ====
B D                  Rabbit  ====
          Cape golden mole  ====
B D                     Pig  ----
B D                 Megabat  ====
B D                 Dolphin  ====
                Chinchilla  ====
B D          Naked mole-rat  ====
          Brush-tailed rat  ====
       Cape elephant shrew  ====
        Chinese tree shrew  ====
B D                Elephant  ====
B D         Chinese hamster  ====
B D                  Tenrec  ====
B D                     Cat  ====
B D                Bushbaby  ====
              Weddell seal  ====
B D                 Ferret   ====
           Star-nosed mole  ====
            Bactrian camel  ====
B D                  Alpaca  ====
             Big brown bat  ----
            Pacific walrus  ====
B D                   Panda  ====
B D                     Cow  ====
              Killer whale  ====
B D                     Dog  ====
          Black flying-fox  ====
B D                   Horse  ----
B D                Squirrel  ----
      David's myotis (bat)  ----
B D                Microbat  ====
B D         Squirrel monkey  ====
B D               Armadillo  ====

Alignment block 48 of 496 in window, 111857523 - 111857526, 4 bps 
B D                   Human  tatt
B D                   Chimp  tatt
B D                 Gorilla  tatt
B D               Orangutan  tgtt
B D                  Gibbon  tgtt
B D                  Rhesus  tgtt
B D     Crab-eating macaque  tgtt
B D                  Baboon  tgtt
B D            Green monkey  tgtt
B D                Marmoset  ggtt
               Prairie vole  agtt
B D                     Pig  --tt
           Tibetan antelope  tgtt
B D                     Cow  tgtt
B D                   Sheep  tgtt
              Domestic goat  tgtt
B D        White rhinoceros  tgtt
B D                 Manatee  gggt
                   Aardvark  tgtt
B D               Armadillo  tgtt
            Golden hamster  ====
    Lesser Egyptian jerboa  ====
B D                     Rat  ====
B D                   Mouse  ====
B D                    Pika  ====
B D                   Shrew  ====
B D              Guinea pig  ====
B D                  Rabbit  ====
          Cape golden mole  ====
B D                 Megabat  ====
B D                 Dolphin  ====
                Chinchilla  ====
B D          Naked mole-rat  ====
          Brush-tailed rat  ====
       Cape elephant shrew  ====
        Chinese tree shrew  ====
B D                Elephant  ====
B D         Chinese hamster  ====
B D                  Tenrec  ====
B D                     Cat  ====
B D                Bushbaby  ====
              Weddell seal  ====
B D                 Ferret   ====
           Star-nosed mole  ====
            Bactrian camel  ====
B D                  Alpaca  ====
             Big brown bat  ----
            Pacific walrus  ====
B D                   Panda  ====
              Killer whale  ====
B D                     Dog  ====
          Black flying-fox  ====
B D                   Horse  ----
B D                Squirrel  ----
      David's myotis (bat)  ----
B D                Microbat  ====
B D         Squirrel monkey  ====

Inserts between block 48 and 49 in window
B D                Manatee 1bp

Alignment block 49 of 496 in window, 111857527 - 111857547, 21 bps 
B D                   Human  tcaaatcaaattttac-----tctgc
B D                   Chimp  tcaaatcaaattttac-----tctgc
B D                 Gorilla  tcaaatcaaattttac-----tctgc
B D               Orangutan  tcaaatcaaattttac-----tctgc
B D                  Gibbon  tcaaatcaaattttac-----tctgc
B D                  Rhesus  tcaaatcaaa-tttac-----tctgc
B D     Crab-eating macaque  tcaaatcaaa-tttac-----tctgc
B D                  Baboon  tcaaatcaaa-tttac-----tctgc
B D            Green monkey  tcaaatcaaa-tttac-----tctgc
B D                Marmoset  tcaaatcaaattttac-----tgtgc
B D                Squirrel  ttaaatcaaattttac-----cccat
               Prairie vole  taaaaacaaattttag-----tctgc
B D                     Pig  taaaagt-cactgtat-----cctgc
           Tibetan antelope  tgaaatc-aagtgta------cctac
B D                     Cow  taaaacc-aattgta------cctag
B D                   Sheep  tgaaatc-aagtgtg------cctac
              Domestic goat  tgaaatc-aagtgta------cctac
B D                   Horse  --aaatcaaagtttac-----cctgc
B D        White rhinoceros  taaaatcaaattttac-----cctgc
B D                Elephant  ttcaacagcaatgggt----------
                   Aardvark  taaaataaaattttac----------
B D               Armadillo  gaaagtgaaatttcaccttgt-----
            Golden hamster  ==========================
    Lesser Egyptian jerboa  ==========================
B D                     Rat  ==========================
B D                   Mouse  ==========================
B D                    Pika  ==========================
B D                   Shrew  ==========================
B D              Guinea pig  ==========================
B D                  Rabbit  ==========================
          Cape golden mole  ==========================
B D                 Megabat  ==========================
B D                 Dolphin  ==========================
                Chinchilla  ==========================
B D          Naked mole-rat  ==========================
          Brush-tailed rat  ==========================
       Cape elephant shrew  ==========================
        Chinese tree shrew  ==========================
B D                 Manatee  ==========================
B D         Chinese hamster  ==========================
B D                  Tenrec  ==========================
B D                     Cat  ==========================
B D                Bushbaby  ==========================
              Weddell seal  ==========================
B D                 Ferret   ==========================
           Star-nosed mole  ==========================
            Bactrian camel  ==========================
B D                  Alpaca  ==========================
             Big brown bat  --------------------------
            Pacific walrus  ==========================
B D                   Panda  ==========================
              Killer whale  ==========================
B D                     Dog  ==========================
          Black flying-fox  ==========================
      David's myotis (bat)  --------------------------
B D                Microbat  ==========================
B D         Squirrel monkey  ==========================

Inserts between block 49 and 50 in window
B D               Elephant 1bp
                  Aardvark 628bp

Alignment block 50 of 496 in window, 111857548 - 111857563, 16 bps 
B D                   Human  ta----------tacacaggaacctg-----
B D                   Chimp  ta----------tacacaggaacctg-----
B D                 Gorilla  ta----------tacacaggaacctg-----
B D               Orangutan  ta----------tacacaggaacctg-----
B D                  Gibbon  ta----------tacacagcaacctg-----
B D                  Rhesus  ta----------tatacaggaacctg-----
B D     Crab-eating macaque  ta----------tatacaggaacctg-----
B D                  Baboon  ta----------tacacaggaacctg-----
B D            Green monkey  ta----------tacacaggaacctg-----
B D                Marmoset  taaattcctgtgtacacaggaatctg-----
B D                Squirrel  tg----------tacaggtaagcctg-----
               Prairie vole  ta----------tggacacaagcctt-----
B D                     Pig  ta----------tacacataaacctt-----
           Tibetan antelope  ta----------tacacataagcctg-----
B D                     Cow  ta----------tacacataagcctg-----
B D                   Sheep  ta----------cacacataagcctg-----
              Domestic goat  ta----------tacacataagcctg-----
B D                   Horse  tc----------tacacataagcctg-----
B D        White rhinoceros  tc----------tacacataaacctg-----
B D                Elephant  ta----------tacacataagcctgctctg
B D                 Manatee  ta----------tacacataagcctgctttg
                   Aardvark  ta----------tacacataaacctgtcctg
B D               Armadillo  ta----------tacacataagcctgctcgg
            Golden hamster  ===============================
    Lesser Egyptian jerboa  ===============================
B D                     Rat  ===============================
B D                   Mouse  ===============================
B D                    Pika  ===============================
B D                   Shrew  ===============================
B D              Guinea pig  ===============================
B D                  Rabbit  ===============================
          Cape golden mole  ===============================
B D                 Megabat  ===============================
B D                 Dolphin  ===============================
                Chinchilla  ===============================
B D          Naked mole-rat  ===============================
          Brush-tailed rat  ===============================
       Cape elephant shrew  ===============================
        Chinese tree shrew  ===============================
B D         Chinese hamster  ===============================
B D                  Tenrec  ===============================
B D                     Cat  ===============================
B D                Bushbaby  ===============================
              Weddell seal  ===============================
B D                 Ferret   ===============================
           Star-nosed mole  ===============================
            Bactrian camel  ===============================
B D                  Alpaca  ===============================
             Big brown bat  -------------------------------
            Pacific walrus  ===============================
B D                   Panda  ===============================
              Killer whale  ===============================
B D                     Dog  ===============================
          Black flying-fox  ===============================
      David's myotis (bat)  -------------------------------
B D                Microbat  ===============================
B D         Squirrel monkey  ===============================

Inserts between block 50 and 51 in window
B D                  Chimp 5bp
B D                Gorilla 5bp
B D              Orangutan 5bp
B D                 Gibbon 5bp
B D                 Rhesus 5bp
B D    Crab-eating macaque 5bp
B D                 Baboon 5bp
B D           Green monkey 5bp
B D               Marmoset 5bp
B D               Squirrel 5bp
              Prairie vole 5bp
          Tibetan antelope 5bp
B D                    Cow 5bp
B D                  Sheep 5bp
             Domestic goat 5bp
B D                  Horse 5bp
B D       White rhinoceros 5bp

Alignment block 51 of 496 in window, 111857564 - 111857568, 5 bps 
B D                   Human  tctca
B D                   Chimp  tctca
B D                 Gorilla  tctca
B D               Orangutan  tctca
B D                  Gibbon  tctca
B D                  Rhesus  tctca
B D     Crab-eating macaque  tctca
B D                  Baboon  tctca
B D            Green monkey  tctca
B D                Marmoset  tgtta
B D                Squirrel  tttca
               Prairie vole  tctcc
B D                     Pig  -ctct
B D                  Alpaca  tctcc
           Tibetan antelope  tctca
B D                     Cow  tctca
B D                   Sheep  tctca
              Domestic goat  tctca
B D                   Horse  tctca
B D        White rhinoceros  tctca
B D                Elephant  tctca
B D                 Manatee  tctca
                   Aardvark  cctca
B D               Armadillo  tctca
            Golden hamster  =====
    Lesser Egyptian jerboa  =====
B D                     Rat  =====
B D                   Mouse  =====
B D                    Pika  =====
B D                   Shrew  =====
B D              Guinea pig  =====
B D                  Rabbit  =====
          Cape golden mole  =====
B D                 Megabat  =====
B D                 Dolphin  =====
                Chinchilla  =====
B D          Naked mole-rat  =====
          Brush-tailed rat  =====
       Cape elephant shrew  =====
        Chinese tree shrew  =====
B D         Chinese hamster  =====
B D                  Tenrec  =====
B D                     Cat  =====
B D                Bushbaby  =====
              Weddell seal  =====
B D                 Ferret   =====
           Star-nosed mole  =====
            Bactrian camel  =====
             Big brown bat  -----
            Pacific walrus  =====
B D                   Panda  =====
              Killer whale  =====
B D                     Dog  =====
          Black flying-fox  =====
      David's myotis (bat)  -----
B D                Microbat  =====
B D         Squirrel monkey  =====

Inserts between block 51 and 52 in window
B D                    Pig 1bp

Alignment block 52 of 496 in window, 111857569 - 111857589, 21 bps 
B D                   Human  ttcta-ccttctccctgcctct
B D                   Chimp  ttcta-ccttctccctgcctct
B D                 Gorilla  ttcta-ccttctccctgcctct
B D               Orangutan  ttcta-ccttctgcctgcctct
B D                  Gibbon  ttcta-ccttctccctgcctct
B D                  Rhesus  ttcta-ccttctccctgcctct
B D