Multiz Alignments of 100 Vertebrates
 

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Alignment block 1 of 1060 in window, 3845499 - 3845517, 19 bps 
B D                   Human  tttcattttaaaatgggaa
B D                   Chimp  tttcattttaaaatgggaa
B D                 Gorilla  tttcattttaaaatgggaa
B D               Orangutan  tttcattttaaaatgggaa
B D                  Gibbon  tttcattttaaaatgggaa
B D                  Rhesus  tttcattttaaaatgagaa
B D     Crab-eating macaque  tttcattttaaaatgagaa
B D                  Baboon  tttcattttaaaatgagaa
B D            Green monkey  tttcattttaaaatgagaa
B D                Marmoset  tttcattttaaaatgggaa
B D         Squirrel monkey  tttcattttaaaatgggaa
         Chinese tree shrew  tttcatttaaaaatgaaaa
B D                Squirrel  tttcattttaaaatagaaa
                 Chinchilla  ttttattttatggtggaaa
B D                  Rabbit  gatgactttgagatgcgga
           Cape golden mole  tttcattt-aaaataggaa
                   Aardvark  tttcattt-aaaatgagaa
           Star-nosed mole  ===================
B D                    Pika  ===================
       Cape elephant shrew  ===================
B D                Hedgehog  ===================
B D                   Shrew  ===================
B D                   Mouse  ===================
              Prairie vole  ===================
B D                     Rat  ===================
B D         Chinese hamster  ===================
            Golden hamster  ===================
          Black flying-fox  ===================
    Lesser Egyptian jerboa  ===================
B D                  Tenrec  ===================
          Brush-tailed rat  ===================
B D              Guinea pig  ===================
B D                     Pig  ===================
B D                 Dolphin  ===================
              Weddell seal  -------------------
B D                 Megabat  ===================
              Killer whale  ===================
B D                   Panda  ===================
             Big brown bat  ===================
B D                     Cow  ===================
             Domestic goat  ===================
B D                   Sheep  ===================
          Tibetan antelope  ===================
B D                Microbat  ===================
      David's myotis (bat)  ===================
B D               Armadillo  ===================
B D                 Manatee  ===================
B D                Elephant  ===================
B D        White rhinoceros  ===================
B D                   Horse  ===================
            Bactrian camel  ===================
B D                  Alpaca  ===================
B D          Naked mole-rat  ===================
B D                     Dog  ===================
B D                 Ferret   ===================
B D                     Cat  ===================
            Pacific walrus  ===================
B D                 Opossum  ===================
B D         Tasmanian devil  ===================
B D                Bushbaby  ===================

Alignment block 2 of 1060 in window, 3845518 - 3845521, 4 bps 
B D                   Human  tggc
B D                   Chimp  tggc
B D                 Gorilla  tggc
B D               Orangutan  tggc
B D                  Gibbon  tggc
B D                  Rhesus  tggt
B D     Crab-eating macaque  tggt
B D                  Baboon  tggt
B D            Green monkey  tggt
B D                Marmoset  tggc
B D         Squirrel monkey  tggc
         Chinese tree shrew  tgat
                 Chinchilla  tgag
           Cape golden mole  tgac
                   Aardvark  tgac
           Star-nosed mole  ====
B D                    Pika  ====
       Cape elephant shrew  ====
B D                Hedgehog  ====
B D                   Shrew  ====
B D                   Mouse  ====
              Prairie vole  ====
B D                     Rat  ====
B D         Chinese hamster  ====
            Golden hamster  ====
B D                  Rabbit  ----
          Black flying-fox  ====
    Lesser Egyptian jerboa  ====
B D                  Tenrec  ====
          Brush-tailed rat  ====
B D              Guinea pig  ====
B D                     Pig  ====
B D                 Dolphin  ====
              Weddell seal  ----
B D                 Megabat  ====
              Killer whale  ====
B D                   Panda  ====
             Big brown bat  ====
B D                     Cow  ====
             Domestic goat  ====
B D                   Sheep  ====
          Tibetan antelope  ====
B D                Microbat  ====
      David's myotis (bat)  ====
B D               Armadillo  ====
B D                 Manatee  ====
B D                Elephant  ====
B D        White rhinoceros  ====
B D                   Horse  ====
            Bactrian camel  ====
B D                  Alpaca  ====
B D                Squirrel  ----
B D          Naked mole-rat  ====
B D                     Dog  ====
B D                 Ferret   ====
B D                     Cat  ====
            Pacific walrus  ====
B D                 Opossum  ====
B D         Tasmanian devil  ====
B D                Bushbaby  ====

Inserts between block 2 and 3 in window
          Cape golden mole 289bp
                  Aardvark 251bp

Alignment block 3 of 1060 in window, 3845522 - 3845557, 36 bps 
B D                   Human  tg-----------ggcgtggtggctca------------------------tgc-----ctctattccta
B D                   Chimp  tg-----------ggcgtggtggctca------------------------tgc-----ctgtattccta
B D                 Gorilla  tg-----------ggtgtggtggctca------------------------tgc-----ctgtattccta
B D               Orangutan  tg-----------ggtgtggtgggtca------------------------tgc-----ctatattccta
B D                  Gibbon  tg-----------ggcgtggtggctca------------------------tgc-----ctgtattccta
B D                  Rhesus  tg-----------ggcgtggttgctca------------------------tgc-----ctgtattccta
B D     Crab-eating macaque  tg-----------ggcgtggttgctca------------------------tgc-----ctgtattccta
B D                  Baboon  tg-----------ggcgtggttgctca------------------------tgc-----ctgtattccta
B D            Green monkey  tg-----------ggtgtggttgctca------------------------tgc-----ctgtattccta
B D                Marmoset  tg-----------ggcatggtggctca------------------------tgg-----ctgtattccta
B D         Squirrel monkey  tg-----------ggcatggtggctca------------------------tgc-----ctgt-------
         Chinese tree shrew  ggggctggcaagtggcgtggtggttaa------------------------gat----------------
                 Chinchilla  ct-----------ggggatatagctcagtggcacagcgcctgcctggcaaacgcaaggtcttgagttcaa
B D                  Rabbit  ---------------------------------------------------tgctggacctagatgtcaa
           Star-nosed mole  ======================================================================
B D                    Pika  ======================================================================
       Cape elephant shrew  ======================================================================
B D                Hedgehog  ======================================================================
B D                   Shrew  ======================================================================
B D                   Mouse  ======================================================================
              Prairie vole  ======================================================================
B D                     Rat  ======================================================================
B D         Chinese hamster  ======================================================================
            Golden hamster  ======================================================================
          Black flying-fox  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
B D                  Tenrec  ======================================================================
          Brush-tailed rat  ======================================================================
B D              Guinea pig  ======================================================================
B D                     Pig  ======================================================================
B D                 Dolphin  ======================================================================
              Weddell seal  ----------------------------------------------------------------------
B D                 Megabat  ======================================================================
              Killer whale  ======================================================================
B D                   Panda  ======================================================================
             Big brown bat  ======================================================================
B D                     Cow  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
B D                Microbat  ======================================================================
      David's myotis (bat)  ======================================================================
B D               Armadillo  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
B D        White rhinoceros  ======================================================================
B D                   Horse  ======================================================================
            Bactrian camel  ======================================================================
B D                  Alpaca  ======================================================================
B D                Squirrel  ----------------------------------------------------------------------
B D          Naked mole-rat  ======================================================================
B D                     Dog  ======================================================================
B D                 Ferret   ======================================================================
B D                     Cat  ======================================================================
            Pacific walrus  ======================================================================
B D                 Opossum  ======================================================================
B D         Tasmanian devil  ======================================================================
          Cape golden mole  ======================================================================
                  Aardvark  ======================================================================
B D                Bushbaby  ======================================================================

                      Human  gcactt------
                      Chimp  gcactt------
                    Gorilla  gcactt------
                  Orangutan  gcactt------
                     Gibbon  gcaatt------
                     Rhesus  acactt------
        Crab-eating macaque  acactt------
                     Baboon  acactt------
               Green monkey  acactt------
                   Marmoset  gcactt------
            Squirrel monkey  ------------
         Chinese tree shrew  ------------
                 Chinchilla  ttactggtacca
                     Rabbit  ttcctt------
            Star-nosed mole  ============
                       Pika  ============
        Cape elephant shrew  ============
                   Hedgehog  ============
                      Shrew  ============
                      Mouse  ============
               Prairie vole  ============
                        Rat  ============
            Chinese hamster  ============
             Golden hamster  ============
           Black flying-fox  ============
     Lesser Egyptian jerboa  ============
                     Tenrec  ============
           Brush-tailed rat  ============
                 Guinea pig  ============
                        Pig  ============
                    Dolphin  ============
               Weddell seal  ------------
                    Megabat  ============
               Killer whale  ============
                      Panda  ============
              Big brown bat  ============
                        Cow  ============
              Domestic goat  ============
                      Sheep  ============
           Tibetan antelope  ============
                   Microbat  ============
       David's myotis (bat)  ============
                  Armadillo  ============
                    Manatee  ============
                   Elephant  ============
           White rhinoceros  ============
                      Horse  ============
             Bactrian camel  ============
                     Alpaca  ============
                   Squirrel  ------------
             Naked mole-rat  ============
                        Dog  ============
                    Ferret   ============
                        Cat  ============
             Pacific walrus  ============
                    Opossum  ============
            Tasmanian devil  ============
           Cape golden mole  ============
                   Aardvark  ============
                   Bushbaby  ============

Alignment block 4 of 1060 in window, 3845558 - 3845609, 52 bps 
B D                   Human  --------------tgagaggccaag----gtg--g--gacaatcact----tgagcccag-gaa---tt
B D                   Chimp  --------------tgagaggccaag----gtg--g--gacaatcact----tgagcccag-gaa---tt
B D                 Gorilla  --------------tcagaggccaag----gtg--g--gacaatcact----tgagcccag-gaa---tt
B D               Orangutan  --------------tgagaagccaag----gtg--g--gacaatcatt----tcagctcag-gaa---tt
B D                  Gibbon  --------------tgagaggccaag----gtg--g--gacaatcact----tgagcccag-gaa---tt
B D                  Rhesus  --------------tgagaggccaag----gtg--g--gacgatcact----tgatcccag-gaa---tt
B D     Crab-eating macaque  --------------tgagaggccaag----gtg--g--gacgatcact----tgatcccag-gaa---tt
B D                  Baboon  --------------tgagaggccaag----gtg--g--gacgatcact----tgatcccag-gaa---tt
B D            Green monkey  --------------tgagaggccaag----gtg--g--gacgatcact----tgatctcag-gaa---tt
B D                Marmoset  --------------tgggaggccaag----gtg--g--gacaatcact----tgagccc-----------
B D         Squirrel monkey  ------------------aggccaag----gtg--g--gacgattact----ggagccc-----------
B D                Bushbaby  --------------tcagtggatagg----gcgctg--gccacatacc----tgagcctggtgag---tt
         Chinese tree shrew  ----------------ggactctcat----gtg--gctgactgtggtt----tgagtcttg-gac---ct
                 Chinchilla  aaaagaaataaaaattaaaagcctctaagggcc--g--gggatatagctcagcaggcacag-cac---ct
B D                  Rabbit  ------------------aggccttt----gtc--a--cacacaca------taagctcat-ttctgact
           Star-nosed mole  ======================================================================
B D                    Pika  ======================================================================
       Cape elephant shrew  ======================================================================
B D                Hedgehog  ======================================================================
B D                   Shrew  ======================================================================
B D                   Mouse  ======================================================================
              Prairie vole  ======================================================================
B D                     Rat  ======================================================================
B D         Chinese hamster  ======================================================================
            Golden hamster  ======================================================================
          Black flying-fox  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
B D                  Tenrec  ======================================================================
          Brush-tailed rat  ======================================================================
B D              Guinea pig  ======================================================================
B D                     Pig  ======================================================================
B D                 Dolphin  ======================================================================
              Weddell seal  ----------------------------------------------------------------------
B D                 Megabat  ======================================================================
              Killer whale  ======================================================================
B D                   Panda  ======================================================================
             Big brown bat  ======================================================================
B D                     Cow  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
B D                Microbat  ======================================================================
      David's myotis (bat)  ======================================================================
B D               Armadillo  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
B D        White rhinoceros  ======================================================================
B D                   Horse  ======================================================================
            Bactrian camel  ======================================================================
B D                  Alpaca  ======================================================================
B D                Squirrel  ----------------------------------------------------------------------
B D          Naked mole-rat  ======================================================================
B D                     Dog  ======================================================================
B D                 Ferret   ======================================================================
B D                     Cat  ======================================================================
            Pacific walrus  ======================================================================
B D                 Opossum  ======================================================================
B D         Tasmanian devil  ======================================================================
          Cape golden mole  ======================================================================
                  Aardvark  ======================================================================

                      Human  tgtaaccagcct
                      Chimp  tgtaaccagcct
                    Gorilla  tgtaaccagcct
                  Orangutan  tgtaaccagcct
                     Gibbon  tgtaaccaacct
                     Rhesus  tgtaaccagcct
        Crab-eating macaque  tgtaaccagcct
                     Baboon  tgtaaccagcct
               Green monkey  tgtaaccagcct
                   Marmoset  ------------
            Squirrel monkey  ------------
                   Bushbaby  tgaaacccgcct
         Chinese tree shrew  ggtggctggctt
                 Chinchilla  tcc---------
                     Rabbit  tcc---------
            Star-nosed mole  ============
                       Pika  ============
        Cape elephant shrew  ============
                   Hedgehog  ============
                      Shrew  ============
                      Mouse  ============
               Prairie vole  ============
                        Rat  ============
            Chinese hamster  ============
             Golden hamster  ============
           Black flying-fox  ============
     Lesser Egyptian jerboa  ============
                     Tenrec  ============
           Brush-tailed rat  ============
                 Guinea pig  ============
                        Pig  ============
                    Dolphin  ============
               Weddell seal  ------------
                    Megabat  ============
               Killer whale  ============
                      Panda  ============
              Big brown bat  ============
                        Cow  ============
              Domestic goat  ============
                      Sheep  ============
           Tibetan antelope  ============
                   Microbat  ============
       David's myotis (bat)  ============
                  Armadillo  ============
                    Manatee  ============
                   Elephant  ============
           White rhinoceros  ============
                      Horse  ============
             Bactrian camel  ============
                     Alpaca  ============
                   Squirrel  ------------
             Naked mole-rat  ============
                        Dog  ============
                    Ferret   ============
                        Cat  ============
             Pacific walrus  ============
                    Opossum  ============
            Tasmanian devil  ============
           Cape golden mole  ============
                   Aardvark  ============

Inserts between block 4 and 5 in window
        Chinese tree shrew 73bp

Alignment block 5 of 1060 in window, 3845610 - 3845653, 44 bps 
B D                   Human  aggcaatc----at----agcaa----gaccccatct--gcatac---acacacaaaaatt
B D                   Chimp  aggcaatc----at----agcaa----gaccccatct--gcatac---acacacaaaaatt
B D                 Gorilla  aggcaatc----at----agcaa----gaccccatct--gcatac---acacacaaaaatt
B D               Orangutan  aggcaatc----at----agcaa----gaccctgtctccacacac---acacacacaaatc
B D                  Gibbon  aggcaatc----at----agcaa----gaccccgtctccacacac---acacacaaaaatt
B D                  Rhesus  aggcaatc----at----agcaa-----acctcatct--ccacac---acacacacaaatt
B D     Crab-eating macaque  aggcaatc----at----agcaa-----acctcatct--ccacac---acacacacaaatt
B D                  Baboon  aggcaatc----at----agcaa-----acctcatct--ccacac---acacacacaaatt
B D            Green monkey  aggcaatc----at----agcaa-----acctcatct--ccacac---acacacaaaaatt
B D                Marmoset  aggcaatt----at----agcaa----caccccatctccacacac---acaaacacaaatt
B D         Squirrel monkey  aggcaatc----at----agcaa----caccccatctccacacac---acaaacacaaatt
B D                Bushbaby  ggaccagctaaaac----aacaatgataactgcaaca--acaata---acaagaacaaaat
                 Chinchilla  tggcaagc----acaaggtcctg----agtttgattc--ttagtgggaaacaaaacaaaac
B D                  Rabbit  tagctaac----ac----tctca----cattcattcc--ttcatt---actgaaagtattc
           Star-nosed mole  =============================================================
B D                    Pika  =============================================================
       Cape elephant shrew  =============================================================
B D                Hedgehog  =============================================================
B D                   Shrew  =============================================================
B D                   Mouse  =============================================================
              Prairie vole  =============================================================
B D                     Rat  =============================================================
B D         Chinese hamster  =============================================================
            Golden hamster  =============================================================
          Black flying-fox  =============================================================
    Lesser Egyptian jerboa  =============================================================
B D                  Tenrec  =============================================================
          Brush-tailed rat  =============================================================
B D              Guinea pig  =============================================================
B D                     Pig  =============================================================
B D                 Dolphin  =============================================================
              Weddell seal  -------------------------------------------------------------
B D                 Megabat  =============================================================
              Killer whale  =============================================================
B D                   Panda  =============================================================
             Big brown bat  =============================================================
B D                     Cow  =============================================================
             Domestic goat  =============================================================
B D                   Sheep  =============================================================
          Tibetan antelope  =============================================================
B D                Microbat  =============================================================
      David's myotis (bat)  =============================================================
B D               Armadillo  =============================================================
B D                 Manatee  =============================================================
B D                Elephant  =============================================================
B D        White rhinoceros  =============================================================
B D                   Horse  =============================================================
            Bactrian camel  =============================================================
B D                  Alpaca  =============================================================
B D                Squirrel  -------------------------------------------------------------
        Chinese tree shrew  =============================================================
B D          Naked mole-rat  =============================================================
B D                     Dog  =============================================================
B D                 Ferret   =============================================================
B D                     Cat  =============================================================
            Pacific walrus  =============================================================
B D                 Opossum  =============================================================
B D         Tasmanian devil  =============================================================
          Cape golden mole  =============================================================
                  Aardvark  =============================================================

Alignment block 6 of 1060 in window, 3845654 - 3845788, 135 bps 
B D                   Human  a----gctgggca-tagtggcacatgcctgt------------------------agtcccagttacttg
B D                   Chimp  a----gctgggca-tagtggcacatgcctgt------------------------agtcccagttacttg
B D                 Gorilla  a----gctgggca-tagtggtacatgcctgt------------------------agtcccagttacttg
B D               Orangutan  a----gctgggca-tagtggcacatgcctgt------------------------agtcccagttacttg
B D                  Gibbon  a----gctgggca-tagtggcacacgcctgt------------------------agtcccagttacttg
B D                  Rhesus  a----gctgggca-tagtggcacatgcctgt------------------------agtcccagttacttg
B D     Crab-eating macaque  a----gctgggca-tagtggcacatgcctgt------------------------agtcccagttacttg
B D                  Baboon  a----gctgggca-tagtggcacatgcctgt------------------------agtcccagttacttg
B D            Green monkey  a----gctgggca-tagtggcacatgcctgt------------------------agtcccagttacttg
B D                Marmoset  a----gctgggca-tggcggcacatgcctgt------------------------agtctcagctacctg
B D         Squirrel monkey  a----gctgggcattggtggcacatgcctgt------------------------agtcccagctactcg
B D                Bushbaby  a----gctgggca-ttgtggggggtgcctgt------------------------agtcccagctacttg
                 Chinchilla  aaaaggctaggtg-tggtgttgcaggcctgt------------------------aatctcagc-actcg
B D                  Rabbit  ctggtgctgggca-tagtgctacatgccagtggtgaagtggatacaacatagagaagtccctac-cctga
B D                     Cat  ----ggctgggta-taatgtcacatggcaat------------------------g--------------
           Star-nosed mole  ======================================================================
B D                    Pika  ======================================================================
       Cape elephant shrew  ======================================================================
B D                Hedgehog  ======================================================================
B D                   Shrew  ======================================================================
B D                   Mouse  ======================================================================
              Prairie vole  ======================================================================
B D                     Rat  ======================================================================
B D         Chinese hamster  ======================================================================
            Golden hamster  ======================================================================
          Black flying-fox  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
B D                  Tenrec  ======================================================================
          Brush-tailed rat  ======================================================================
B D              Guinea pig  ======================================================================
B D                     Pig  ======================================================================
B D                 Dolphin  ======================================================================
              Weddell seal  ----------------------------------------------------------------------
B D                 Megabat  ======================================================================
              Killer whale  ======================================================================
B D                   Panda  ======================================================================
             Big brown bat  ======================================================================
B D                     Cow  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
B D                Microbat  ======================================================================
      David's myotis (bat)  ======================================================================
B D               Armadillo  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
B D        White rhinoceros  ======================================================================
B D                   Horse  ======================================================================
            Bactrian camel  ======================================================================
B D                  Alpaca  ======================================================================
B D                Squirrel  ----------------------------------------------------------------------
        Chinese tree shrew  ======================================================================
B D          Naked mole-rat  ======================================================================
B D                     Dog  ======================================================================
B D                 Ferret   ======================================================================
            Pacific walrus  ======================================================================
B D                 Opossum  ======================================================================
B D         Tasmanian devil  ======================================================================
          Cape golden mole  ======================================================================
                  Aardvark  ======================================================================

                      Human  ctaggctgaggtgggaggatcact-------tgagtctaggtgtttgaggttgc-----agagagcta--
                      Chimp  ctaggctgaggtgggaggatcact-------tgagtctaggtgtttgaggttgc-----agagagcta--
                    Gorilla  ctaggctgaggtgggaggatcact-------tgagtctaggtgtttgaggttgc-----agagagcta--
                  Orangutan  ctaggctgaggtgggaggatcact-------tgagtctaggtgtttgaggttgc-----agagagcta--
                     Gibbon  ctagactgaggtgggaggatcact-------tgagtctaggtgtttgaggttgc-----agagagcta--
                     Rhesus  ctaggctgaggtgggcggatcact-------tgagcctaggcgtttgaggttgc-----agagagcta--
        Crab-eating macaque  ctaggctgaggtgggcggatcact-------tgagcctaggtgtttgaggttgc-----agagagcta--
                     Baboon  ctaggctgaggtgggcggatcact-------tgagcctaggtgtttgaggttgc-----agagagcta--
               Green monkey  ctaggctgaggtgggcggatcact-------tgagcctaggtgtttgaggttgc-----agagagcta--
                   Marmoset  ctaggctgaggtgggaggatcact-------tgagcctaggtgtttcaggttgc-----agagagcta--
            Squirrel monkey  ctagactgaggtgggagtatcact-------tgaacctaggtgttcgaggttgc-----agagagct---
                   Bushbaby  ggaggctaaggcaagagaatcgct-------taagcccaggagtttgaggttac-----tgtgagctg--
                 Chinchilla  ggaggctgaggcaggaggatcattgcaagtttgagaccag----cctgggctac-----aaagtaagc--
                     Rabbit  taagact-agcaaggaagatagat---------agacca---------aagtac-----atagtatta--
                        Cat  --acacagaggtgaaaaca-caga-------taagtccctat-cctgatgtaactagcaagggagataga
            Star-nosed mole  ======================================================================
                       Pika  ======================================================================
        Cape elephant shrew  ======================================================================
                   Hedgehog  ======================================================================
                      Shrew  ======================================================================
                      Mouse  ======================================================================
               Prairie vole  ======================================================================
                        Rat  ======================================================================
            Chinese hamster  ======================================================================
             Golden hamster  ======================================================================
           Black flying-fox  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
                     Tenrec  ======================================================================
           Brush-tailed rat  ======================================================================
                 Guinea pig  ======================================================================
                        Pig  ======================================================================
                    Dolphin  ======================================================================
               Weddell seal  ----------------------------------------------------------------------
                    Megabat  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                   Microbat  ======================================================================
       David's myotis (bat)  ======================================================================
                  Armadillo  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
           White rhinoceros  ======================================================================
                      Horse  ======================================================================
             Bactrian camel  ======================================================================
                     Alpaca  ======================================================================
                   Squirrel  ----------------------------------------------------------------------
         Chinese tree shrew  ======================================================================
             Naked mole-rat  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
             Pacific walrus  ======================================================================
                    Opossum  ======================================================================
            Tasmanian devil  ======================================================================
           Cape golden mole  ======================================================================
                   Aardvark  ======================================================================

                      Human  ---tgatcatgccactgcactacagtctgggtgacagagtg
                      Chimp  ---tgatcatgccactgcactccagtctgggtgacacagtc
                    Gorilla  ---cgatcgtgccactgcactccagtctgggtgacagagtg
                  Orangutan  ---tgatcatgccattgcactccagtctgggtgacagagtg
                     Gibbon  ---tgatcgtgccactgcactccagtctgggtgacagagtg
                     Rhesus  ---tgatcgtgccactgtcctccagtctgggtgacagagtg
        Crab-eating macaque  ---tgatcgtgccactgtactccagtctgggtgacagagtg
                     Baboon  ---tgatcgtgccactgtactccagtctgggtgacagagtg
               Green monkey  ---tgatcgtgccactgtactccagtctgggtgacagagtg
                   Marmoset  ---tgattgtgtcactgcactccagtctgggggacagactg
            Squirrel monkey  ------ttgtgtcactgcactccagtctgggtgacagattg
                   Bushbaby  ---tga---caccacagcactctaccgagggtgatagcttg
                 Chinchilla  ---tcaaggt------------cagcctgaactgcatagca
                     Rabbit  ---caagtgc------------aaacaacaaccaacttttc
                        Cat  tcttaaacaggtaaatatacaaaagt-------acagagtg
            Star-nosed mole  =========================================
                       Pika  =========================================
        Cape elephant shrew  =========================================
                   Hedgehog  =========================================
                      Shrew  =========================================
                      Mouse  =========================================
               Prairie vole  =========================================
                        Rat  =========================================
            Chinese hamster  =========================================
             Golden hamster  =========================================
           Black flying-fox  =========================================
     Lesser Egyptian jerboa  =========================================
                     Tenrec  =========================================
           Brush-tailed rat  =========================================
                 Guinea pig  =========================================
                        Pig  =========================================
                    Dolphin  =========================================
               Weddell seal  -----------------------------------------
                    Megabat  =========================================
               Killer whale  =========================================
                      Panda  =========================================
              Big brown bat  =========================================
                        Cow  =========================================
              Domestic goat  =========================================
                      Sheep  =========================================
           Tibetan antelope  =========================================
                   Microbat  =========================================
       David's myotis (bat)  =========================================
                  Armadillo  =========================================
                    Manatee  =========================================
                   Elephant  =========================================
           White rhinoceros  =========================================
                      Horse  =========================================
             Bactrian camel  =========================================
                     Alpaca  =========================================
                   Squirrel  -----------------------------------------
         Chinese tree shrew  =========================================
             Naked mole-rat  =========================================
                        Dog  =========================================
                    Ferret   =========================================
             Pacific walrus  =========================================
                    Opossum  =========================================
            Tasmanian devil  =========================================
           Cape golden mole  =========================================
                   Aardvark  =========================================

Alignment block 7 of 1060 in window, 3845789 - 3845824, 36 bps 
B D                   Human  agatcctgtctc-------taaaaactaacaaataa-aaa--acaa
B D                   Chimp  agatcctgtctc-------taaaaactaacaaataa-aaa--acaa
B D                 Gorilla  agatcctgtctc-------taaaaactaacaaataa-aaa--acaa
B D               Orangutan  agatcctgtctc-------taaaaaccaacaaataa-aaa--acaa
B D                  Gibbon  agatcctgtctc-------taaaaaccaacaaataa-aaa--acaa
B D                  Rhesus  agatcctgtctc-------taaaag-caacaaataa-aaa--acaa
B D     Crab-eating macaque  agatcctgtctc-------taaaaaccaacaaataa-aaa--acaa
B D                  Baboon  agatcctgcctc-------taaaaaccaacaaataa-aaa--acaa
B D            Green monkey  agatcctgtctc-------taaaaaccaacaaataa-aaa--acaa
B D                Marmoset  agaccctttctc-------taaaaa----caaata--aat--acaa
B D         Squirrel monkey  agaccctgtctc-------taaaaa----caaatac-aaa--acaa
B D                Bushbaby  agactctgtctc-------aaaaaaataaaataata-ata--ataa
         Chinese tree shrew  agatcat-tctt-------taaaaa------aataa-aaatgacaa
                 Chinchilla  agaccttgtctcagaaaaacaaaaacaaacaaacaa-aaa--agaa
B D                  Rabbit  agtcttggtttc----------------------------------
B D                     Cat  ---------ctg-------taagag----catagaacaga--gcaa
           Star-nosed mole  ==============================================
B D                    Pika  ==============================================
       Cape elephant shrew  ==============================================
B D                Hedgehog  ==============================================
B D                   Shrew  ==============================================
B D                   Mouse  ==============================================
              Prairie vole  ==============================================
B D                     Rat  ==============================================
B D         Chinese hamster  ==============================================
            Golden hamster  ==============================================
          Black flying-fox  ==============================================
    Lesser Egyptian jerboa  ==============================================
B D                  Tenrec  ==============================================
          Brush-tailed rat  ==============================================
B D              Guinea pig  ==============================================
B D                     Pig  ==============================================
B D                 Dolphin  ==============================================
              Weddell seal  ----------------------------------------------
B D                 Megabat  ==============================================
              Killer whale  ==============================================
B D                   Panda  ==============================================
             Big brown bat  ==============================================
B D                     Cow  ==============================================
             Domestic goat  ==============================================
B D                   Sheep  ==============================================
          Tibetan antelope  ==============================================
B D                Microbat  ==============================================
      David's myotis (bat)  ==============================================
B D               Armadillo  ==============================================
B D                 Manatee  ==============================================
B D                Elephant  ==============================================
B D        White rhinoceros  ==============================================
B D                   Horse  ==============================================
            Bactrian camel  ==============================================
B D                  Alpaca  ==============================================
B D                Squirrel  ----------------------------------------------
B D          Naked mole-rat  ==============================================
B D                     Dog  ==============================================
B D                 Ferret   ==============================================
            Pacific walrus  ==============================================
B D                 Opossum  ==============================================
B D         Tasmanian devil  ==============================================
          Cape golden mole  ==============================================
                  Aardvark  ==============================================

Inserts between block 7 and 8 in window
B D               Bushbaby 23bp
                Chinchilla 16bp
B D                 Rabbit 5bp
B D                    Cat 13bp

Alignment block 8 of 1060 in window, 3845825 - 3845825, 1 bps 
B D                   Human  t
B D                   Chimp  t
B D                 Gorilla  t
B D               Orangutan  t
B D                  Gibbon  c
B D                  Rhesus  t
B D     Crab-eating macaque  t
B D                  Baboon  t
B D            Green monkey  t
B D                Marmoset  t
B D         Squirrel monkey  t
B D                Bushbaby  t
         Chinese tree shrew  t
B D         Chinese hamster  t
             Golden hamster  t
B D                   Mouse  t
B D                     Rat  t
                 Chinchilla  t
B D                    Pika  t
B D                  Alpaca  t
             Bactrian camel  t
B D                 Dolphin  t
               Killer whale  t
           Tibetan antelope  t
B D                     Cow  t
B D                   Sheep  t
              Domestic goat  t
B D                   Horse  t
B D                     Cat  t
B D                     Dog  t
B D                 Ferret   t
B D                   Panda  t
           Black flying-fox  t
B D                 Megabat  t
              Big brown bat  t
       David's myotis (bat)  t
B D                Microbat  t
            Star-nosed mole  t
B D                Elephant  t
B D                 Manatee  t
B D               Armadillo  t
       Cape elephant shrew  =
B D                Hedgehog  =
B D                   Shrew  =
              Prairie vole  =
B D                  Rabbit  =
    Lesser Egyptian jerboa  =
B D                  Tenrec  =
          Brush-tailed rat  =
B D              Guinea pig  =
B D                     Pig  =
              Weddell seal  -
B D        White rhinoceros  =
B D                Squirrel  -
B D          Naked mole-rat  =
            Pacific walrus  =
B D                 Opossum  =
B D         Tasmanian devil  =
          Cape golden mole  =
                  Aardvark  =

Inserts between block 8 and 9 in window
B D                   Pika 1bp

Alignment block 9 of 1060 in window, 3845826 - 3845826, 1 bps 
B D                   Human  a
B D                   Chimp  a
B D                 Gorilla  a
B D               Orangutan  a
B D                  Gibbon  a
B D                  Rhesus  a
B D     Crab-eating macaque  a
B D                  Baboon  a
B D            Green monkey  a
B D                Marmoset  a
B D         Squirrel monkey  a
B D                Bushbaby  a
               Prairie vole  a
B D         Chinese hamster  a
             Golden hamster  a
B D                   Mouse  a
B D                     Rat  a
                 Chinchilla  a
B D                  Rabbit  a
B D                    Pika  a
B D                  Alpaca  a
             Bactrian camel  a
B D                 Dolphin  a
               Killer whale  a
           Tibetan antelope  a
B D                     Cow  a
B D                   Sheep  a
              Domestic goat  a
B D                   Horse  a
B D                     Cat  a
B D                     Dog  a
B D                 Ferret   a
B D                   Panda  a
           Black flying-fox  a
B D                 Megabat  a
              Big brown bat  a
       David's myotis (bat)  a
B D                Microbat  a
            Star-nosed mole  a
B D                Elephant  a
B D                 Manatee  a
B D                  Tenrec  a
B D               Armadillo  a
       Cape elephant shrew  =
B D                Hedgehog  =
B D                   Shrew  =
    Lesser Egyptian jerboa  =
          Brush-tailed rat  =
B D              Guinea pig  =
B D                     Pig  =
              Weddell seal  -
B D        White rhinoceros  =
B D                Squirrel  -
        Chinese tree shrew  -
B D          Naked mole-rat  =
            Pacific walrus  =
B D                 Opossum  =
B D         Tasmanian devil  =
          Cape golden mole  =
                  Aardvark  =

Alignment block 10 of 1060 in window, 3845827 - 3845835, 9 bps 
B D                   Human  aaatgggac
B D                   Chimp  aaatgggac
B D                 Gorilla  aaatgggac
B D               Orangutan  aaatgggac
B D                  Gibbon  aaatgggac
B D                  Rhesus  aaatgggac
B D     Crab-eating macaque  aaatgggac
B D                  Baboon  aaatgggac
B D            Green monkey  aaatgggac
B D                Marmoset  aaatggaac
B D         Squirrel monkey  aaatggaac
B D                Bushbaby  acatgagaa
         Chinese tree shrew  -------tc
               Prairie vole  agatgtgaa
B D         Chinese hamster  agatgtgaa
             Golden hamster  agatgtgaa
B D                   Mouse  aaatgtgaa
B D                     Rat  aaatgtgaa
                 Chinchilla  taatggaaa
B D                  Rabbit  aaatggg--
B D                    Pika  aaaggggg-
B D                  Alpaca  aaatcggag
             Bactrian camel  aaactggaa
B D                 Dolphin  aaatcagaa
               Killer whale  aaatcagaa
           Tibetan antelope  aagttggaa
B D                     Cow  aaatcggaa
B D                   Sheep  aagtcggaa
              Domestic goat  aagtcggaa
B D                   Horse  aaatgggaa
B D        White rhinoceros  -----gaaa
B D                     Cat  aaatgggaa
B D                     Dog  aaatgggaa
B D                 Ferret   aaatgggaa
B D                   Panda  aaatgggaa
             Pacific walrus  aaatgggaa
               Weddell seal  aaatggcaa
           Black flying-fox  aaatgagca
B D                 Megabat  aaatgagca
              Big brown bat  aaatgagaa
       David's myotis (bat)  aaatgagaa
B D                Microbat  aaaggagaa
            Star-nosed mole  agataggaa
B D                Elephant  aaatgggaa
B D                 Manatee  aaatggaaa
B D                  Tenrec  aagtgggaa
B D               Armadillo  aaaggggaa
       Cape elephant shrew  =========
B D                Hedgehog  =========
B D                   Shrew  =========
    Lesser Egyptian jerboa  =========
          Brush-tailed rat  =========
B D              Guinea pig  =========
B D                     Pig  =========
B D                Squirrel  ---------
B D          Naked mole-rat  =========
B D                 Opossum  =========
B D         Tasmanian devil  =========
          Cape golden mole  =========
                  Aardvark  =========

Alignment block 11 of 1060 in window, 3845836 - 3845860, 25 bps 
B D                   Human  tggc-aa------g-------tgctg-------ca-tgagattgtga
B D                   Chimp  tggc-aa------g-------tgctg-------ca-tgagattgtga
B D                 Gorilla  tggc-aa------g-------tgctg-------ca-tgagattgtga
B D               Orangutan  tggc-aa------g-------tgctg-------cg-tgagattgtga
B D                  Gibbon  tggc-aa------g-------ggccg-------ca-tgagattgtga
B D                  Rhesus  tggc-aa------g-------tgctg-------ca-cgagattgtga
B D     Crab-eating macaque  tggc-aa------g-------tgctg-------ca-tgagattgtga
B D                  Baboon  tggc-aa------g-------tgctg-------ca-tgagattgtga
B D            Green monkey  tggc-aa------g-------tgctg-------ca-tgaaattgtga
B D                Marmoset  tggc-aa------g-------tgctg-------tg-tgagattgtga
B D         Squirrel monkey  tggc-aa------g-------tgctg-------tg-tgagattgtga
B D                Bushbaby  tgac-aa------a-------tactgagctctttg-tggaatcatga
         Chinese tree shrew  tgg---a------g-------tgctt-------tg-tgaaattgtga
B D                Squirrel  agac-aa------at----agtgctt-------tg-tgagattgggg
               Prairie vole  tgac-aa------a-------tgtct-------tg-atggattgtgc
B D         Chinese hamster  tgac-aa------a-------tgtct-------tg-atggattgtgc
             Golden hamster  tgac-aa------a-------tgtct-------tgaatggattgtgc
B D                   Mouse  tggc-aa------a-------tgcct-------gg-aggggctgtgc
B D                     Rat  tgac-aa------a-------tgcct-------tg-ggggactgtgc
                 Chinchilla  tgaa-aa------atacagagtgctt-------tg-tgggattgcaa
B D                  Rabbit  --------------------atgctt-------tg-tgggattgcaa
B D                    Pika  tgac-aa------atactgagtgcat-------tg-tgggattgtga
B D                  Alpaca  taac-aatacagtg-------cactt-------tg-tgggattatga
             Bactrian camel  taac-aatactgtg-------ctctt-------tg-tgggattatga
B D                 Dolphin  tgac-aatactgtg-------tgctt-------tg-tgggattgcga
               Killer whale  tgac-aatactgtg-------tgctt-------tg-tgggattgcga
           Tibetan antelope  tgac-aatactgtg-------tactt-------tg-tgggattatga
B D                     Cow  tgac-aatactgtg-------tactt-------tg-tgggattatga
B D                   Sheep  tgac-aatactgtg-------tactt-------tg-tgggattatga
              Domestic goat  tgac-aatactgtg-------tactt-------tg-tgggattatga
B D                   Horse  tgac-aatgatctg-------tgctg-------tg-tgggattgtga
B D        White rhinoceros  tgac-agtactttg-------tgctc-------tg-tgggatcatga
B D                     Cat  tgac-aatactatg-------tgctt-------tg-tgggatt----
B D                     Dog  tgat-aatactacg-------ggctt-------tg-tgggactgtga
B D                 Ferret   tgac-aatactatg-------ggctt-------tg-tgggattgtga
B D                   Panda  cgac-aacactaag-------tgctt-------tg-tgggattgtga
             Pacific walrus  tgac-aatactacg-------tgctt-------tg-tggaattgtga
               Weddell seal  tgac-aatactaca-------tgctt-------tg-tgggattgtga
           Black flying-fox  tgac-aataccatg-------tgctt-------tg-tgggattgtga
B D                 Megabat  tgac-aataccatg-------tgctt-------tg-tgggattgtga
              Big brown bat  tgag-aatactgtg-------tgctt-------tg-cgggattgtga
       David's myotis (bat)  tgac-aatactgtg-------tgctt-------tg-tgggattgtga
B D                Microbat  tgac-aatactgtg-------tgctt-------tg-tgggattgtga
            Star-nosed mole  gaacaaatactttg-------tgctt-------tg-tggatttttga
B D                Elephant  tgac-aatactacc-------tactt-------tg-tgaggttgtga
B D                 Manatee  tgac-aatactacc-------tactt-------tg-tgaggttgtga
B D                  Tenrec  tgac-aatcctaca-------tactt-------tt-tgaagtggtaa
B D               Armadillo  tgac-aatactaca-------tagtt-------tg-tgggactgtga
       Cape elephant shrew  ===============================================
B D                Hedgehog  ===============================================
B D                   Shrew  ===============================================
    Lesser Egyptian jerboa  ===============================================
          Brush-tailed rat  ===============================================
B D              Guinea pig  ===============================================
B D                     Pig  ===============================================
B D          Naked mole-rat  ===============================================
B D                 Opossum  ===============================================
B D         Tasmanian devil  ===============================================
          Cape golden mole  ===============================================
                  Aardvark  ===============================================

Alignment block 12 of 1060 in window, 3845861 - 3845934, 74 bps 
B D                   Human  gtattaaacgacataatgcatgtgg-agc-c-c-tcgtaaattgccc-------tagggta------cag
B D                   Chimp  gtattaaacgacataatgcatgtgg-agc-c-c-tcgtaaattgccc-------tagggta------cag
B D                 Gorilla  gtattaaacgacataatgcatgtgg-agc-c-c-tcataaattgccc-------tagggta------cag
B D               Orangutan  gtattaaacgacataatgcatgtgg-agc-c-c-tcgtaaattgccc-------taaggta------cag
B D                  Gibbon  gtattaaacgacatagtgcatgtgg-agc-c-cttcgtaaattgccc-------tagggta------cag
B D                  Rhesus  ggattaaatgacataatgcatgtgg-agc-c-c-tcgtaaattgccc-------gagggta------gag
B D     Crab-eating macaque  ggattaaatgacataatgcatgtgg-agc-c-c-tcgtaaattgccc-------gagggta------gag
B D                  Baboon  ggattaaatgacataatgcatgtgg-agc-c-c-tcataaattgccc-------gagggta------gag
B D            Green monkey  ggattaaatgacataatgcatgtgg-agc-c-c-tcgtaaattgccc-------gagggta------gag
B D                Marmoset  ggattaaatgacgtaatgcatgtag-agc-c-t-tagtaaattgccc-------tagggta------cag
B D         Squirrel monkey  ggattaaatgacataatacatgtag-agc-c-c-tagtaagttgccc-------tagggta------cag
B D                Bushbaby  ggcttaaatgagataatacaggtggaaga-g-c-tagcaaattgccc-------aaaggtg------caa
         Chinese tree shrew  gaattcaatataataatgcatgttg-agcag-c-tcatatattgccc-------aagatta------caa
B D                Squirrel  ggattagata-----atgcatgtag-aat-g-gctagcaagttgccc-------aatggta------tca
               Prairie vole  agattaagtaaag-tactcttgtgg-aat-g-g----taaattggccattggtcattggta------tga
B D         Chinese hamster  agatgaagtaaag-tacacttgtgc-aat-g-g----caa--------------attggta------caa
             Golden hamster  agatgaagtaaag-tacacttgtgc-aat-g-g----caa--------------attagta------caa
B D                   Mouse  aggtgaagta-----acacctgtgg-aat-g-g----------------------------------caa
B D                     Rat  aggtgaagta-----acacccgtgg-act-g-g----caaatcggcc-------attggaa------caa
                 Chinchilla  ggattaaatgaagccatatatatgg-agt-g-gctagcaagctgcct-------aaaggta------tga
B D                  Rabbit  agattaaat---------------g-agt-g-actagcaaattaccc-------aggggtg------caa
B D                    Pika  agattcagtgagatcagacatgtgg-agt-g-accaacatattgctc-------aagggtg------cag
B D                  Alpaca  agattaaatgagataa-gcaagcgg-agt-g-tctagccgattgcca--------agagta------caa
             Bactrian camel  agattaaatgagataa-gcaagcgg-agt-g-tctagccgattgcta--------agagta------caa
B D                 Dolphin  ggattcagtgagataa-gcaagctg-agt-g-tctagcagattgccc--------agggta------caa
               Killer whale  ggattcagtgagataa-gcaagctg-agt-g-tctagcagattgccc--------agggta------caa
           Tibetan antelope  ggattcaatgaaataa-gcaagcca-aga-g-tctagcagattgctc--------agggta------caa
B D                     Cow  ggattcagtgaaatga-gcaagcca-aga-g-tctagcagattgccc--------agggta------caa
B D                   Sheep  ggattcaatgaaataa-ggaagcca-aga-g-tctagcagattgccc--------agggta------caa
              Domestic goat  ggattcaatgaaataa-ggaagcca-aga-g-tctagcagattgccc--------agggtg------caa
B D                   Horse  ggattaaatggggtgatgcaagtgg-agc-g-gctagcaggttgccc--------agggta------c--
B D        White rhinoceros  ggattaaatgagataat--aaatgg-agt-g-gctagcaggttgccc--------agacta------caa
B D                     Cat  -------atgagataatgcaagttg-agt-g-ttgagcagattgccc--------agagta------cga
B D                     Dog  ggattaaatgagagaatgcaaatag-aat-gccctagccgattgcct--------agggta------caa
B D                 Ferret   ggatt-catgaaagaatgcaagtag-aat-g-cttaggagattgccc--------agggtg------caa
B D                   Panda  ggattaaatgagagaatgcaagcag-aac-g-cctagcagattgccc--------agggta------caa
             Pacific walrus  ggattaaatgagagaatgcaaatag-aat-g-cctagcagattgccc--------agggta------caa
               Weddell seal  ggattaaatgagagaatgcaagtag-aat-g-cctagcagattgccc--------agggta------caa
           Black flying-fox  ggattaaatgagataatataagtgt-ggc-a-tctagcagattgccc--------aggata------caa
B D                 Megabat  ggattaaatgagataatataagtgt-ggc-a-tctagcagattgccc--------aagata------caa
              Big brown bat  ggattaaatgagataatacaa------gc-a-tctagcagattgccc--------agggtatactagtaa
       David's myotis (bat)  ggattaaatgagataatacaa------gc-g-tctagcagattgtcc--------agggta------taa
B D                Microbat  atattaaatgagataatacaa------gc-a-tctagcagattgtcc--------agggta------taa
            Star-nosed mole  ggattaaccgagttaatgcaagtgg-agt-g-cctagtggattgccc--------ggggca------tag
B D                Elephant  ggattaaattagacaacgcatgtgg-agg-g-tctaataaattgccc--------tgg------------
B D                 Manatee  ggattaaattagataatgcatgtgg-agc-a-tctaataaattgccc--------agggtc------caa
B D                  Tenrec  ggattaaagtagatacagcatgtgg-aac-a-tctagtaaattgctc--------agggcc---------
                   Aardvark  gtattaacc---atagcactaccag-agc---tccagtaaattgccc--------agtgtt------cag
B D               Armadillo  ggactaaat---------------g-agc-a-cctagcaaattgccc--------agggta---------
       Cape elephant shrew  ======================================================================
B D                Hedgehog  ======================================================================
B D                   Shrew  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
          Brush-tailed rat  ======================================================================
B D              Guinea pig  ======================================================================
B D                     Pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D                 Opossum  ======================================================================
B D         Tasmanian devil  ======================================================================
          Cape golden mole  ======================================================================

                      Human  caaataaacat-----tagtt----aattt
                      Chimp  caaataaacat-----tagtt----aattt
                    Gorilla  caaataaacat-----tagtt----aattt
                  Orangutan  caaataaacat-----tagtt----aattt
                     Gibbon  caaataaacat-----tagtt----aattt
                     Rhesus  caaataaacat-----tagtt----aattt
        Crab-eating macaque  caaataaacat-----tagtt----aattt
                     Baboon  caaataaacat-----tagtt----aattt
               Green monkey  caaataaacat-----tagtt----aattt
                   Marmoset  caaataaacgt-----tagtt----aattt
            Squirrel monkey  caaataaacat-----tagtt----aattt
                   Bushbaby  caaataaatat-----t---------attt
         Chinese tree shrew  cacataaagat-----tagtt----aattt
                   Squirrel  caaataaacat-----taatt---------
               Prairie vole  caaataagcat-----taatt---------
            Chinese hamster  caaattagcat-----taatt---------
             Golden hamster  caaataagcct-----taatt---------
                      Mouse  caaataagcat-----taatt---------
                        Rat  caaatgagca--------------------
                 Chinchilla  c-aataaacat-----caatt---------
                     Rabbit  caaacattcat-----tgat----------
                       Pika  caaacgttcat-----tgat----------
                     Alpaca  caaataaacat-----tactt----aattt
             Bactrian camel  caaataaacat-----tactt----aattt
                    Dolphin  ttaataaacat---------t----tattt
               Killer whale  ttaataaacat---------t----tattt
           Tibetan antelope  tgaataaacat-----tactt----aattt
                        Cow  tgaataaacat-----tacat----aattt
                      Sheep  tgaataaacat-----tactt----aattt
              Domestic goat  tgaataaacat-----tactt----aattt
                      Horse  -------------------------agtct
           White rhinoceros  cacataaacat---------tagttaattt
                        Cat  c----aaaca------------------tt
                        Dog  c-----aacat---------t----aattt
                    Ferret   c----aaacat---------t----aattt
                      Panda  c----aaacat---------t----aattt
             Pacific walrus  c----aaacat---------t----aattt
               Weddell seal  c----aaacat---------t----aattt
           Black flying-fox  caaataaacat---------t----aattt
                    Megabat  caaataaatgt---------t----aattt
              Big brown bat  caaatgaacat-----tagtt----cattt
       David's myotis (bat)  caaatgaacattactgtagtt----aattt
                   Microbat  ctaatgaacattactgtagtt----aattt
            Star-nosed mole  caagcaaacat---------t----aattt
                   Elephant  --------cat-----gagtt----cattt
                    Manatee  caaataaacat-----gagtt----cattt
                     Tenrec  caaataaacat-----gagct----tattt
                   Aardvark  caaataaacat-----gaatt----catct
                  Armadillo  taagtaaacat-----caatt----cattt
        Cape elephant shrew  ==============================
                   Hedgehog  ==============================
                      Shrew  ==============================
     Lesser Egyptian jerboa  ==============================
           Brush-tailed rat  ==============================
                 Guinea pig  ==============================
                        Pig  ==============================
             Naked mole-rat  ==============================
                    Opossum  ==============================
            Tasmanian devil  ==============================
           Cape golden mole  ==============================

Alignment block 13 of 1060 in window, 3845935 - 3845942, 8 bps 
B D                   Human  ctccacac
B D                   Chimp  ctccacac
B D                 Gorilla  ctccacac
B D               Orangutan  ctccacac
B D                  Gibbon  ctccatac
B D                  Rhesus  ctctacac
B D     Crab-eating macaque  ctctacac
B D                  Baboon  ctctacac
B D            Green monkey  ctctacac
B D                Marmoset  ctctacac
B D         Squirrel monkey  ctctacac
B D                Bushbaby  ctccacac
         Chinese tree shrew  caccatac
B D                Squirrel  -tttatgt
               Prairie vole  -tctatgc
B D         Chinese hamster  -tccatac
             Golden hamster  -tccattc
B D                   Mouse  -cccatac
                 Chinchilla  -tccatcc
B D                  Alpaca  ctccatat
             Bactrian camel  ctccatat
B D                 Dolphin  ctgcatgt
               Killer whale  ctgcatgt
           Tibetan antelope  ctccattc
B D                     Cow  ctccattc
B D                   Sheep  ctccattc
              Domestic goat  ctccattc
B D                   Horse  ctccatac
B D        White rhinoceros  cttcatac
B D                     Cat  ttctatat
B D                     Dog  ctc-atat
B D                 Ferret   ctctgtat
B D                   Panda  ctctatat
             Pacific walrus  ctctctat
               Weddell seal  ctctatat
           Black flying-fox  ttccacat
B D                 Megabat  ttccacat
              Big brown bat  ctccatat
       David's myotis (bat)  ctccatat
B D                Microbat  ctccatat
B D                   Shrew  cccccaac
            Star-nosed mole  ctccatac
B D                Elephant  ctccacac
B D                 Manatee  ctccacac
B D                  Tenrec  ctccacac
                   Aardvark  ctccacat
B D               Armadillo  cttcacac
B D                    Pika  --------
       Cape elephant shrew  ========
B D                Hedgehog  ========
B D                     Rat  --------
B D                  Rabbit  --------
    Lesser Egyptian jerboa  ========
          Brush-tailed rat  ========
B D              Guinea pig  ========
B D                     Pig  ========
B D          Naked mole-rat  ========
B D                 Opossum  ========
B D         Tasmanian devil  ========
          Cape golden mole  ========

Alignment block 14 of 1060 in window, 3845943 - 3845960, 18 bps 
B D                   Human  tcccttga---t-----gttttcag-g
B D                   Chimp  tcccttga---t-----gttttcag-g
B D                 Gorilla  tcccttga---t-----gttttcag-g
B D               Orangutan  tcccttga---t-----gttttcag-g
B D                  Gibbon  tcccttga---t-----gttttcag-g
B D                  Rhesus  tcccttga---t-----gttttcag-g
B D     Crab-eating macaque  tcccttga---t-----gttttcag-g
B D                  Baboon  tcccttga---t-----gttttcag-g
B D            Green monkey  tcccttga---t-----gttttcag-g
B D                Marmoset  tcacttga---t-----gtttgcac-g
B D         Squirrel monkey  tcccttga---t-----gttttcac-g
B D                Bushbaby  ctccatga---t-----gttttcag-g
         Chinese tree shrew  -------a---g-----gtttacag-g
B D                Squirrel  ccaaataa---t-----gttttaag-t
               Prairie vole  cccagtga---c-----gttttcaa-g
B D         Chinese hamster  ctcagtga---ctttcttttttcaa-g
             Golden hamster  cctagtga---c-----attttcaa-a
B D                   Mouse  cccagtga---c-----attttcaa-g
                 Chinchilla  cccaatga---t-----gttttcag-g
B D                  Rabbit  -----------------gctttcaa-g
B D                    Pika  -----------------gtttccaact
B D                  Alpaca  gcctaagt---t-----gttttcaa-g
             Bactrian camel  gcctatgt---t-----gttttcaa-g
B D                 Dolphin  actcatgt---t-----gttttcaa-g
               Killer whale  actcatgt---t-----gttttcaa-g
           Tibetan antelope  actcatgt---t-----gttttcaa-g
B D                     Cow  actcatgt---t-----gttttcaa-g
B D                   Sheep  actcatgt---t-----gttttcaa-g
              Domestic goat  actcatgt---t-----gttttcaa-g
B D                   Horse  acccatga---t-----gtcctcag-g
B D        White rhinoceros  acccatga---t-----gttctcag-g
B D                     Cat  gccca----------------------
B D                     Dog  gccca----------------------
B D                 Ferret   gccca----------------------
B D                   Panda  gctcc----------------------
             Pacific walrus  gtcca----------------------
               Weddell seal  gtcca----------------------
           Black flying-fox  gcctatga---t-----gttatcag-a
B D                 Megabat  gcctatga---t-----gttatcag-a
              Big brown bat  gcccatgg---t-----gttctcag-g
       David's myotis (bat)  gctcatgg---t-----gttctcag-g
B D                Microbat  gcccatgg---t-----gttctcag-g
B D                   Shrew  ctccatgatttt-----tttctcag-t
            Star-nosed mole  ctccatga---t-----gtcctcag-t
B D                Elephant  aaccatga---t-----gttctcag-g
B D                 Manatee  atctctga---t-----gttctcag-c
           Cape golden mole  tctcatga---t-----attc-aag-g
B D                  Tenrec  cctcatgg-------------------
                   Aardvark  cctcatga---t-----gttcacag-g
B D               Armadillo  ccccatga---t------ttctcag-g
       Cape elephant shrew  ===========================
B D                Hedgehog  ===========================
B D                     Rat  ---------------------------
    Lesser Egyptian jerboa  ===========================
          Brush-tailed rat  ===========================
B D              Guinea pig  ===========================
B D                     Pig  ===========================
B D          Naked mole-rat  ===========================
B D                 Opossum  ===========================
B D         Tasmanian devil  ===========================

Inserts between block 14 and 15 in window
B D               Squirrel 3bp
                Chinchilla 120bp

Alignment block 15 of 1060 in window, 3845961 - 3846060, 100 bps 
B D                   Human  ---tatccccccgc----------c-ctt-ggttaattcttccctctctctc-aatgtcaaaatgctaaa
B D                   Chimp  ---tatccccccac----------c-ctt-ggttaattcttccctctctctc-aatgtcaaaatgctaaa
B D                 Gorilla  ---tatccccccgc----------c-ctt-ggttaattcttccctctctctc-aatgtcaaaatgctaaa
B D               Orangutan  ---tatcccctccccaccgccccgc-ctt-ggttaattcttccctctctctc-aatgtcaaaatgctaaa
B D                  Gibbon  ---tatcccccccc----------cgctt-gattaattcttccctctctctc-aatgtcaaaatgctaaa
B D                  Rhesus  ---tatccccca------------c-ctt-ggttaattcttcc----ctctc-aatgtcaaagtgctgaa
B D     Crab-eating macaque  ---tatccccca------------c-ctt-ggttaattcttcc----ctctc-aatgtcaaagtgctgaa
B D                  Baboon  ---tatccccca------------c-ctt-ggttaattcttcc----ctctc-aatgtcaaagtgctgaa
B D            Green monkey  ---tatcctcca------------c-ctt-ggttaattcttcc----ctctc-aatgtcaaagtgctgaa
B D                Marmoset  ---tttcccc--------------c-ctt-ggttaattcttccctctttctc-aatgtcaaaatgctaaa
B D         Squirrel monkey  ---gttcccc--------------c-ctt-ggttaattcttccctctttctc-aatgtcaaaatgctaaa
B D                Bushbaby  ---tttttcc--------------c-ctt-gattaattcttccatctttctc-aaggtcaaaatgctaaa
         Chinese tree shrew  ---tttttcc--------------c-ctt-gatcaattcgtccttctttctc-aaggcaaaaatgctaaa
B D                Squirrel  ---ttttcca--------------c-ctt-aatcaataattccctctctctcaaa-atcaaaacattaaa
               Prairie vole  ---gcccccc--------------c-ct--------------cccatttctt-at-gtcaaaatgctaga
B D         Chinese hamster  ---cttcctc--------------a-ct-----------ttctctatttctt-aa-gtcaaaatgctaga
             Golden hamster  ---cttcccc--------------a-ct-----------ttctctgtttctt-aa-gtcaaaatgctagg
B D                   Mouse  ------tccc--------------c-ct-----------ttctctagttctt-aa-gtcagaatgctaaa
B D                     Rat  ------------------------c-cc-----------ttctctgtttctt-aa-gtcaaaatgctaaa
B D                  Rabbit  ---cttttcc--------------c-ttg-gatcaatttttcccattttctc-aa-gtcaaaatgttgag
B D                    Pika  ---ttttttt--------------c-cta-catcaatttttttcctcttttc-aa-gggcaaatactaag
B D                  Alpaca  ---tt-ttcc--------------c-tct-ga-cagt--tttcttctttctc-aaggtcaaaatgctaaa
             Bactrian camel  ---tt-ttcc--------------c-cct-ga-cagttctttcttctttctc-aaggtcaaaatgctaaa
B D                 Dolphin  ---tttttct--------------c-cct-ga-taattcttccctctttctc-aagatc-aaatgctaaa
               Killer whale  ---tttttct--------------c-cct-ga-taattcttccctctttctc-aagatc-aaatgctaaa
           Tibetan antelope  ---ttattcc--------------c-cct-ga-taatttttccttctttctc-agggtc-aaatgctaaa
B D                     Cow  ---ttattcc--------------c-ccg-ga-taatttttccttctttctc-aaggtc-aaatgctaaa
B D                   Sheep  ---ttattcc--------------c-cct-ga-taatttttccttctttctc-aaggtc-aaatgctaaa
              Domestic goat  ---ttattcc--------------c-ccg-ga-taatttttccttctttctc-aaggtc-aaatgctaaa
B D                   Horse  ---tttttcc--------------c-cct-gaccaattcttccctctttctc-aaggtcaaaatgctaaa
B D        White rhinoceros  ---tttttcc--------------c-cct-caccaattcttccctctttctc-aaggtgaaaatgctaaa
B D                     Cat  ----------------------------------------------------------------------
B D                     Dog  ----------------------------------------------------------------------
B D                 Ferret   ----------------------------------------------------------------------
B D                   Panda  ----------------------------------------------------------------------
             Pacific walrus  ----------------------------------------------------------------------
               Weddell seal  ----------------------------------------------------------------------
           Black flying-fox  ---tttttcc--------------c-cct-gaccaattcttcc--ctttctc-aaggtcgaaatgctaaa
B D                 Megabat  ---tttttcc--------------c-cct-gaccaattcttcc--ctttctc-aaggtcgaaatgctaaa
              Big brown bat  ---ttcttcc--------------c-cct-caccaattcctccttctttctc-aaggtcaaaatgctaaa
       David's myotis (bat)  ---ttcttcc--------------c-cct-caccagttcttctttctttctc-aaggtcaaaatgctaaa
B D                Microbat  ---ttcttcc--------------c-cct-caccaattcttccttctttctc-aaggtcaaaatgctaaa
B D                   Shrew  ---tc-ttct--------------g-cct-gatcaatactccatctc-tctc-aaagtcaaaatgctaaa
            Star-nosed mole  ------tttc--------------a-cct-aaccaattcttcctttcttctc-aagatt---atgttaaa
B D                Elephant  tttgttttcc--------------c-tcc-gaccaattcttccttctttctc-aaggtcaaaatttgaaa
B D                 Manatee  ttcgttttcc--------------c-tca-gacccattcttccttcttttgc-aaagtcaaaatgtgaaa
           Cape golden mole  tttgcttttc--------------c-tcaaggtttgttcttccttctttctc-aagttctaaatgctaaa
B D                  Tenrec  --tgtttttc--------------c-tca--gcccaatcttccttctttctc-aag--------gataaa
                   Aardvark  tttgttttcc--------------t-tct-gactaattcttcttcctttctt-aaggtcaaaatgtgaaa
B D               Armadillo  tttgttttcc--------------c-cca-gacaaattcttccctctttctc-aaggtcaaaatgctaaa
       Cape elephant shrew  ======================================================================
B D                Hedgehog  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
          Brush-tailed rat  ======================================================================
                Chinchilla  ======================================================================
B D              Guinea pig  ======================================================================
B D                     Pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D                 Opossum  ======================================================================
B D         Tasmanian devil  ======================================================================

                      Human  gc---tga-c-tagtttccctg-----agagaggaggggacaga-g-a-gt-----gagagg------ag
                      Chimp  gc---tga-c-tagtttccctg-----agagaggaggggacaga-g-a-gt-----gagagg------ag
                    Gorilla  gc---tga-c-tagtttccctg-----agagaggaggggacaga-g-a-gt-----gagagg------ag
                  Orangutan  gc---tga-c-tagtttccctga-aacagagaggaggggacaga-g-a-gt-----gagagg------ag
                     Gibbon  gc---tga-c-tagtttccctga-aagagagaggaggggacaga-g-a-gt-----gagagg------ag
                     Rhesus  gc---tga-c-tagtttccctga-aagagagaggaggggacaga-g-a-gt-----gagagg------ag
        Crab-eating macaque  gc---tga-c-tagtttccctga-aagagagaggaggggacaga-g-a-gt-----gagagg------ag
                     Baboon  gc---tga-c-tagtttccctga-aagagagaggaggggacaga-g-a-gt-----gagagg------ag
               Green monkey  gc---tga-c-tagtttccctga-aagagagaggaggggacaga-g-a-gt-----gagagg------ag
                   Marmoset  gc---tga-c-tagtttccctga-aagaaaagggaggagtc--a-g-a-gt-----gagaga------ag
            Squirrel monkey  gc---tga-c-tagtttccctga-aagagaagggaggagacaga-g-a-gt-----gagagg------ag
                   Bushbaby  gc---tgacc-tagttttcatga----acaaggatggagacaga-gaa-gg-----gacaag------aa
         Chinese tree shrew  gc---tgacc-caatactcctgaaaagagcatgaggaagacaaa-gaa-gt-----ggaggg------aa
                   Squirrel  gc---tca-ttcagttttcctga-----aagagcaaggtgggga-g-agct-----ggagga------g-
               Prairie vole  gt---tga-cttagtactcctca-----aattgaagggtcgaga-t-c-ca-----gggaga------a-
            Chinese hamster  gt---tga-cttagtacccctca-----aattgaagggtccaga-g-g-ca-----gggaga------a-
             Golden hamster  gt---tga-tttagtacccctca-----aactgaagggttcaga-g-a-ca-----gagagg------a-
                      Mouse  gg---tga-c----tgttgctca-----ta-tgaagggtccaga-g-a-ca-----ggaata------a-
                        Rat  -g---tga-c----cattgctct-----ta-tgaagggtccaga-g-a-ca-----gggata------g-
                     Rabbit  ac---tga-ttcagttcttctgg-----g---------------------------------------a-
                       Pika  at---tga-ttcagttcctttgg-----gcaggcggagtggaga-g-a-----------ggt------a-
                     Alpaca  gc---tga-ctcagttcccctaa-aagagcagaatggaaataga-g-a---------acaag------ag
             Bactrian camel  gc---tga-ctcagttcccctaa-aagagccgaatggaaataga-g-a---------acaag------ag
                    Dolphin  gc---tga-ctcagttcccctga-aagagcaggatgaagacaga-g-a-gg-----gggagg------ag
               Killer whale  gc---tga-ctcagttcccctga-aagagcaggatgaagacaga-g-a-gg-----gggagg------ag
           Tibetan antelope  gc---tga-ctcagttcccctaa-aagcgcaagatggagacaga-g-a---------ggagg------ag
                        Cow  gc---tga-ttcagttcccctaa-aagcgcaagatggagacaga-g-a---------ggagg------ag
                      Sheep  gc---tga-ctcagttcccctaa-aagtgcaagatggagacaga-g-a---------agagg------ag
              Domestic goat  gc---tga-ctcagttcccctaa-aagcgcaagatggagacaga-g-a---------ggagg------ag
                      Horse  gc---tga-ctcggttcccctaa-aagatcagggtggagacaga-g-a-gg-----aggagg------aa
           White rhinoceros  gc---tga-ctcagttcccctaa-aagagcagggtggagaca-----a-gg-----aggagg------ag
                        Cat  -----tga-cttggctcccctaa-aaaagcagggcagagacaga-a-a-gg-----aggaag-----aaa
                        Dog  -----tga-cttggtgcccctaa-aagagcagggcagagacaga-a-a-gg-----aggaggaaaaaaaa
                    Ferret   -----tga-cttgattcccctag-aagagcagggtagagagaga-a-a-gg-----aggagg------aa
                      Panda  -----tga-cttggttcccctaa-atgagcagggtggagacaga-a-a-gg-----aggagg-------a
             Pacific walrus  -----tga-cttggttcccctaa-aagagcagggcggagacaga-a-a-gg-----aggagg------aa
               Weddell seal  -----tga-cttggttcccctaa-aagagcagggcggagacaga-a-a-gg-----aggagg-----aaa
           Black flying-fox  gc---tga-ttgggttcctctaa-aagagtagggtagagacagaag-a-gg-----aggtag------ag
                    Megabat  gc---tga-ttgggttcctctaa-aagagcagggtagagacagaag-a-gg-----aggtag------ag
              Big brown bat  gc---tga-ctcggttctcctac-aggagcagggtggagacaga------g-----aggagg------ag
       David's myotis (bat)  gc---tga-cttggttctcctac-aagagcaggctggtgacaga-g-a-ag-----aggagg------ag
                   Microbat  gc---tga-cttggttctcctac-aagagcaggctggtgacaga-g-a-gg-----aggagg------ag
                      Shrew  g----taa-ttaaaattcccttt-aag---------gggccgga-g-c-gatagcacagagg------gt
            Star-nosed mole  gc---taa-ctccatttacctta-agg---------gaggcaga-g----------aagaga------ag
                   Elephant  tc---cta-ctcagttcccc-aa-aaaagcagggtagagacagg-g-a-ga-----gggaag------ag
                    Manatee  ag---cta-ctcagttcccctaa-aaaagcagggtagagacagg-g-a-ga-----gctaag------ag
           Cape golden mole  gc---cta-ctcagttccc-tga-aagagcagggtggagacagg-g-a-gg-----gggaag------ac
                     Tenrec  gtctacta-ctcagttcccttaa-aagagcagggtggaggcagg-g-a-gg-----gggaag------ag
                   Aardvark  gc---cta-ctcagttcccctaa-aagagcagggtggagaaagg-g-a-ga-----gggaaa------ag
                  Armadillo  gc---tga-ctcagttcctctga-aaaagctgggcagagataaa-g-a-g------gggaag------ag
        Cape elephant shrew  ======================================================================
                   Hedgehog  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
           Brush-tailed rat  ======================================================================
                 Chinchilla  ======================================================================
                 Guinea pig  ======================================================================
                        Pig  ======================================================================
             Naked mole-rat  ======================================================================
                    Opossum  ======================================================================
            Tasmanian devil  ======================================================================

Inserts between block 15 and 16 in window
B D               Marmoset 313bp
        Chinese tree shrew 3bp

Alignment block 16 of 1060 in window, 3846061 - 3846064, 4 bps 
B D                   Human  aaag
B D                   Chimp  aaag
B D                 Gorilla  aaag
B D               Orangutan  aaag
B D                  Gibbon  aaag
B D                  Rhesus  aaag
B D     Crab-eating macaque  aaag
B D                  Baboon  aaag
B D            Green monkey  aaag
B D                Marmoset  aaag
B D         Squirrel monkey  aaag
B D                Bushbaby  -aaa
         Chinese tree shrew  gaag
B D                Squirrel  aaag
               Prairie vole  aaat
B D         Chinese hamster  aaat
             Golden hamster  aaat
B D                   Mouse  aaat
B D                     Rat  aaat
B D                  Rabbit  gagg
B D                    Pika  aaag
B D                  Alpaca  aaag
             Bactrian camel  aaag
B D                 Dolphin  aaag
               Killer whale  aaag
           Tibetan antelope  aaag
B D                     Cow  aaag
B D                   Sheep  aaag
              Domestic goat  aaag
B D                   Horse  aaag
B D        White rhinoceros  aaag
B D                     Cat  aaaa
B D                     Dog  aaaa
B D                 Ferret   aaga
B D                   Panda  aaaa
             Pacific walrus  aaaa
               Weddell seal  aaaa
           Black flying-fox  aagg
B D                 Megabat  aagg
              Big brown bat  aagg
       David's myotis (bat)  aagg
B D                Microbat  aagg
B D                   Shrew  aaag
            Star-nosed mole  aag-
B D                Elephant  aaaa
B D                 Manatee  aaaa
           Cape golden mole  aaaa
B D                  Tenrec  aaag
                   Aardvark  aaag
B D               Armadillo  aagg
       Cape elephant shrew  ====
B D                Hedgehog  ====
    Lesser Egyptian jerboa  ====
          Brush-tailed rat  ====
                Chinchilla  ====
B D              Guinea pig  ====
B D                     Pig  ====
B D          Naked mole-rat  ====
B D                 Opossum  ====
B D         Tasmanian devil  ====

Inserts between block 16 and 17 in window
B D                  Shrew 1427bp

Alignment block 17 of 1060 in window, 3846065 - 3846138, 74 bps 
B D                   Human  g-ccctgaactgat--ctcaccagtgccc----tga-ggattccaaaggg-gtct-tc----ccagc-ct
B D                   Chimp  g-ccctgaactgat--ctcaccagtgccc----tga-ggattccaaaggg-gtct-tc----ccagc-ct
B D                 Gorilla  g-ccctgaactgat--ctcaccagtgccc----tga-ggattccaaaggg-gtct-tc----ccagc-ct
B D               Orangutan  g-ccctgaactgat--ctcaccagtgccc----tga-ggattccaaaggg-gtct-tc----ccagc-ct
B D                  Gibbon  g-ccctgaactgat--ctcaccagtgccc----tga-ggattccaaaggg-gtct-tc----ccagc-ct
B D                  Rhesus  g-acctgaactaat--ctcaccagtgccc----taa-ggattccaaaggg-gtct-tc----ccagc-ct
B D     Crab-eating macaque  g-acctgaactaat--ctcaccagtgccc----tga-ggattccaaaggg-gtct-tc----ccagc-ct
B D                  Baboon  g-acctgaactaat--ctcaccagtgccc----tga-ggattccaaaggg-gtct-tc----ccagc-ct
B D            Green monkey  g-acctgaactaat--ctcaccagtgccc----tga-ggattccaaaggg-gtct-tc----ccagc-ct
B D                Marmoset  a-ccctgaactgat--ctcaccagtgccc-----ga-gaattccaaaagg-gcct-tc----ccagc-ct
B D         Squirrel monkey  a-ccctcaactgat--ctcaccagtgcgg-----ga-gaattccaaaagg-gact-tc----ccagc-ct
B D                Bushbaby  g-gcctgaattgat--ct--cctgtgccc----tggtggctcccaaatgg-gtct-tg----caagt-ct
         Chinese tree shrew  a-ccttgaactgat--ctcacctgtgctt----ggt-ggctttcaaatgt-gtctgtc----cttga-ct
B D                Squirrel  g-tcctaga-tgat--gtcacttgtgccc----tgatatcttttaagtgg-gtct---------------
               Prairie vole  g-tcctggg-tgat--ctcgcctgggctc----tgctggtttccaaacaa-gtct-tc----ctgcccct
B D         Chinese hamster  tctcctggg-tgat--ctcacctgagctc----tgctggtttccaaacag-gtct-tc----ccatccct
             Golden hamster  tctcctggg-tgat--ctcacctgagctc----tgctggtttccaagcag-gtct-tc----acacccct
B D                   Mouse  g-tcctggg-tgat--gtcacctgaactc----tgttctcttccaatcga-gtct-tc----ccacctct
B D                     Rat  g-tcctggg-tgat--ctcacccgagctc----cgctgccttccacacag-gtct-tc----tcaccttt
B D                  Rabbit  a-tcccgaactgat--cccacctgtcccc----tggtggcttccaaatgg-ctct-tc----ccagc-tt
B D                    Pika  a-tcctggacttac--ttcacctgtatct----tggtggcttcccaatggcctct-tc----ctggc-ct
B D                  Alpaca  g-ccct-gaattat--ctcacccctgccctggttggtgttttccaaatgg-gtct-tt----ccagc-ct
             Bactrian camel  g-ccct-gaattat--ctcacccctgccctggttggtgttttccaaatgg-gtct-tt----ccagc-ct
B D                 Dolphin  g-ccctgaattgat--ctcacccctgccc----tggtgttttccaaacgg-gtct-tc----ccagc-ct
               Killer whale  g-ccctgaattgat--ctcacccctgccc----tggtgttttccaaacgg-gtct-tc----ccagc-ct
           Tibetan antelope  g-ccct-cactaat--ctcacccctgccc----tgatgttttccaaatga-gtct-tt----ccagc-ct
B D                     Cow  gcccct-cactggt--ctcacccctgccc----tgatgttttccaaatgg-gtct-tt----ccagc-ct
B D                   Sheep  g-ccct-cactgat--ctcacccctgccc----tgatgttttccagatga-gttt-tt----ccagc-ct
              Domestic goat  g-ccct-cactgat--ctcacccctgccc----tgatgttttccagatga-gtct-tt----ccagc-ct
B D                   Horse  g-ccctgaactgat--ctcgtctctgccc----cggtgtcttccaaacgg-gtct-tc----ccagc-ct
B D        White rhinoceros  g-ccctgcctttctcactcactcctgcct----tggtgtcttccaaacgg-gtct-cc----ccagc-cc
B D                     Cat  g-ccctgaaatgat--ctcacctctgccc----tggtgtcttccgaacag-gtct-tc----ccagc-tt
B D                     Dog  g-ccttgaaatgat--ttcacctctgccc----tcctgtcttccaaagag-gtct-tc----ctagc-ct
B D                 Ferret   g-ccttgaaatgtt--ttaacctctgccc----tggtctcttctgaacag-gtct-tt----ccagc-ct
B D                   Panda  t-cct-----tgat--ttcacctctgcgc----tggtgtcttgcaaacag-gtct-ct----ccagc-ct
             Pacific walrus  g-ccttgaaatgat--ttcacctctgccc----tggtgtcttccaaacag-gtct-tc----ccaac-ct
               Weddell seal  g-ccttgaaatgat--ttcaactctgccc----tggtgtcttccaaacag-gtct-tc----ccagc-ct
           Black flying-fox  g-ccctgaactgat--ctcacctctgcct----tggtggcttctgaatgg-gtct-tc----ccagc-ct
B D                 Megabat  g-ccctgaactgat--ctcgcctctgcct----tggtggcttctgaatgg-gtct-tc----ccagc-ct
              Big brown bat  g-ccctgaactgat--ctcacccctgccc----cagaagcttct--------------------agc-tt
       David's myotis (bat)  a-ccctgaactaat--cttgcccctgccc----tagaagcttct--------------------agc-tt
B D                Microbat  g-ctctgaactaat--ctcacccctgccc----tagaagcttct--------------------agc-tt
            Star-nosed mole  g-ccctaaactgat-----------ggct----tactggtttcagaatgg-gttt-tcacagtcggt-ct
B D                Elephant  g-ccctgaactgat--ctcattcatgccc----tggggacttccaaatgg-gtct-tc----ccaga-ac
B D                 Manatee  g-ccttgaactgat--ctcatccatggcc----cggggacttccaaatgg-gtct-tc----ccagc-ct
           Cape golden mole  g-ccctgaactcat--ctcatctatgccc----tggagacttccaaatgt-ccct-tc----ccagc-cc
B D                  Tenrec  g-cccagaactcat--ctcattcatgcca----gggggactcccaaatgg-gtct-tc----ccagt-tc
                   Aardvark  g-tcctgaactcat--ctcacccatgccc----cggggacatccaaatgg-gtct-tc----acagc-cc
B D               Armadillo  g-cccggacctgat--cttgcctgtgccc----tggtgacttccaaatga-atct-tc----ccagc-cc
       Cape elephant shrew  ======================================================================
B D                Hedgehog  ======================================================================
B D                   Shrew  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
          Brush-tailed rat  ======================================================================
                Chinchilla  ======================================================================
B D              Guinea pig  ======================================================================
B D                     Pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D                 Opossum  ======================================================================
B D         Tasmanian devil  ======================================================================

                      Human  at-tcc---tcactgaactcc--ag
                      Chimp  at-tcc---tcactgaactcc--ag
                    Gorilla  at-tcc---tcactgaactcc--ag
                  Orangutan  at-tcc---tcactgaactcc--ag
                     Gibbon  at-tcc---tcactgaactcc--ag
                     Rhesus  at-tcc---tcactgaactcc--ag
        Crab-eating macaque  at-tcc---tcactgaactcc--ag
                     Baboon  at-tcc---tcactgaactcc--ag
               Green monkey  at-tcc---tcactgaactcc--ag
                   Marmoset  at-tcc---tcactgaactcc--ag
            Squirrel monkey  at-tcc---tcactgaactcc--ag
                   Bushbaby  ag-tcc---tccctgaactcc--ag
         Chinese tree shrew  ag-aag---tcactggaccct--ag
                   Squirrel  ----------cagtgaacttc--ag
               Prairie vole  gg-tcc---ctagga----------
            Chinese hamster  ac-tcc---ccagtaaactcc--aa
             Golden hamster  ac-tct---ccagtaaactcc--aa
                      Mouse  ag-tcc---tgagtgagcccc--ag
                        Rat  ag-tcc---ctggtaaacccc--ag
                     Rabbit  ag-tcc---tcactgaact----cg
                       Pika  ac-tcc---tcgctgaactccaacg
                     Alpaca  ag-ttg---tcactgagctcc--ag
             Bactrian camel  ag-ttg---tcactgagctct--ag
                    Dolphin  gg-tcc---tcactgagctcc--ag
               Killer whale  gg-tcc---tcactgagctcc--ag
           Tibetan antelope  gg-tcc---tcactgagttcc--ag
                        Cow  gg-tcc---tcactgagttcc--ag
                      Sheep  gg-tcc---tctctgagttcc--ag
              Domestic goat  gg-tcc---tcactgagttcc--ag
                      Horse  ag-tcc---tcactgagttcc--ag
           White rhinoceros  ag-ccc---tcaccgagctcc--ag
                        Cat  ag-tct---gca-tgagctcc--ag
                        Dog  gg-tgt---gca-taaacacc--at
                    Ferret   ag-tct---gta-tgagctcc--at
                      Panda  ag-tct---gta-tgagctcc--at
             Pacific walrus  ag-tct---gta-tgagctcc--at
               Weddell seal  ag-tct---gta-tgagctct--gt
           Black flying-fox  ag-tca---tccctgagctcc--ag
                    Megabat  ag-tca---tccctgagctcc--ag
              Big brown bat  a------------------------
       David's myotis (bat)  ag-tcc---tcgctgaactcc--ag
                   Microbat  ag-tcc---tcactgaactcc--ag
            Star-nosed mole  ag-ttc---tcgctgagctcc--aa
                   Elephant  ag---t---tctctgagctcc--at
                    Manatee  agctct---cctctgagctcc--ag
           Cape golden mole  ag---ttaatcactaagctgt--ag
                     Tenrec  ag---t---tctttgagcttc--ag
                   Aardvark  acttct---cctctgagctct--gg
                  Armadillo  ag-tcc---cctctgagtccc--ag
        Cape elephant shrew  =========================
                   Hedgehog  =========================
                      Shrew  =========================
     Lesser Egyptian jerboa  =========================
           Brush-tailed rat  =========================
                 Chinchilla  =========================
                 Guinea pig  =========================
                        Pig  =========================
             Naked mole-rat  =========================
                    Opossum  =========================
            Tasmanian devil  =========================

Alignment block 18 of 1060 in window, 3846139 - 3846208, 70 bps 
B D                   Human  ctccaggagctcaccagt-----gatcca-c--agg--g----g-tc----ttg-gcttagccccag---
B D                   Chimp  ctccaggagctcaccagt-----gatcca-c--agg--g----g-tc----ttg-gcttagccccag---
B D                 Gorilla  ctccaggagctcagcagt-----gatcca-c--agg--g----c-tc----ttg-gcttagccccag---
B D               Orangutan  ctcctggagctcaccagt-----gatcca-c--agg--g----g-tc----ttg-gcttagccccag---
B D                  Gibbon  ctcttggagctcaccagt-----gatcca-c--agg--g----g-tc----ttg-gcttagccccag---
B D                  Rhesus  ctcctggagttcaccagt-----gatcca-c--agg--g----g-tc----ttg-gcttagctccag---
B D     Crab-eating macaque  ctcctggagttcaccagt-----gatcca-c--agg--g----g-tc----ttg-gcttagctccag---
B D                  Baboon  ctcctggagttcaccagt-----gatcca-c--agg--g----g-tc----ttg-gcttagctccag---
B D            Green monkey  ctcctggagttcaccagt-----gatcca-c--agg--g----g-tc----ttg-gcttagctccag---
B D                Marmoset  ttcctggagcccaccagt-----gatcca-c--agg--g----g-tc----ttg-gctcagccccag---
B D         Squirrel monkey  ttcctggagctcaccagt-----gatcca-c--agg--g----g-tc----ttg-gctcagccccag---
B D                Bushbaby  ctcctatagctcaccagt-----ggtcca-t--aag--a----gttt----ttt-gctcagccctag---
         Chinese tree shrew  c-cctgtagcttaccaat-----ga--------------------cc----tt------------aa---
B D                Squirrel  ctcctgtaat--actgtg-----acccattg--agg--a----c-tt----ctg--ctcagctcagg---
               Prairie vole  ------------accggt-----ggccag-a--ggg--t----t-tg----ctg-----agtgttag---
B D         Chinese hamster  ctcctgtggtttaccggc-----agctggca--ggg--g----g-tt----ctg-----agttttag---
             Golden hamster  ctcctgtggctcaccaga-----ggctggca--ggg--t----g-tt----ctg-----agctttag---
B D                   Mouse  cttttgtggttcgccagt-----gcccac-a--ggg--t----g-tt----ctg-----agaatcgg---
B D                     Rat  cttttgcggttcaccaat-----gcccac-a--ggg--t----g-tt----cgg-----agaatcag---
B D                  Rabbit  ctcctggagctcacaagc-----aacca--c--agg--g----g-tc----ctg-----ag---------
B D                    Pika  gccttggacttcaccagc-----ggccat-c--agg--g----a-tc----ttc-----ca---------
B D                  Alpaca  ctcctatagctcattagt-----ggccct-t--a-g--g----g-tc----ttctgcttagtcccag---
             Bactrian camel  ctcctatagctcattagt-----ggtcct-c--a-g--g----g-tc----ttctgcttagtcccag---
B D                 Dolphin  ctcctatggctcaccagt-----gaccca-c--a-g--g----g-tt----ttctgctcagtcccag---
               Killer whale  ctcctatggctcaccagt-----ggccca-c--a-g--g----g-tt----ttctgctcagtcccag---
           Tibetan antelope  cttccacagaccaccagt-----ggcaca-t--a-g--g----a-tc----ttctgctcagtcctag---
B D                     Cow  cttctataacccaccagt-----ggcaca-t--a-g--g----a-tc----ttctgctcagtcctag---
B D                   Sheep  cttccatagaccacaagt-----ggcaca-t--a-g--g----a-tc----ttctgctcagtcctag---
              Domestic goat  cttccatagaccacaagt-----ggcaca-t--a-g--g----a-tc----ttctgctcagtcctag---
B D                   Horse  ctcctggagctcaccagc-----aaccca-c--aag--g----g-tc----ttttgctcaatcccag---
B D        White rhinoceros  ctcctggagttcaccagt-----ggccca-c--aag--g----g-tc----ttctgctcagtcccag---
B D                     Cat  ccccgatagctcacgcat-----ggccca-c--aca--g----g-tc----ttctgctcagccccag---
B D                     Dog  ctcctatagctcaccagt-----ggctca-c--aag--g----g-tcttctttctgttcagtcccag---
B D                 Ferret   ttcttgtagctcaccagg-----ggctca-c--aag--g----g-tc----ttctgctcagtgtcag---
B D                   Panda  ctcctatagctcaccagt-----ggctca-c--aag--g----g-cc----ttctgctccgtcttag---
             Pacific walrus  ctcctatagctcaccagt-----ggctca-c--aag--g----g-tc----ttctgctcagtctcag---
               Weddell seal  cccctatagctcaccagt-----ggctca-c--aag--g----g-tc----ttctgctcagtctcag---
           Black flying-fox  ttcctatagctcaccagt-----ggccca-c--aag--gaagag-tc----ttctgctcagtcccag---
B D                 Megabat  ttcctatagctcaccagt-----ggccca-c--aag--gaagag-tc----ttctgctcagtcccag---
              Big brown bat  ttcctgtagttcaccagt-----gaccca-t--aag--g----g-tt----ttctgcttcatcccag---
       David's myotis (bat)  ctcctatagctcgccagt-----ggccca-t--aag--g----g-tt----ttctgcttagtcccagtcc
B D                Microbat  ctcctatagctcaccagt-----ggccca-t--aag--g----g-tt----ttctgcttaattccagtcc
B D                   Shrew  ctc---tgggtccccact-----agctcc-c-ggag--t----g-at----ctctgcccagtgtcag---
            Star-nosed mole  ctcgattagttcaccagt-----ggccc-----aag--a----g-tc----tcctgctcagtgccag---
B D                Elephant  ctcctattgcctacaagt-----gcccca-c--aag--g----a-tc----ttctgctcagctccag---
B D                 Manatee  ctccttttgttcaccggt-----ggccca-c--aag--g----g-tc----ttctgctcagctctag---
           Cape golden mole  ctcctattgcccaccatc-----agccca-c--aag--t----g-tc----ttctgctcagctccaa---
B D                  Tenrec  ttcctattggcctcca-a-----aggcca-c--aaggtc----a-tc----ttgggctgggctccag---
                   Aardvark  ttcctattgcccatctgc-----agccta-c--aag--t----g-tc----ttctg------ttcag---
B D               Armadillo  cccctatagccaaccagctatagggtcct-ctgtag--g----g-tt----ctcttctgcagcccag---
       Cape elephant shrew  ======================================================================
B D                Hedgehog  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
          Brush-tailed rat  ======================================================================
                Chinchilla  ======================================================================
B D              Guinea pig  ======================================================================
B D                     Pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D                 Opossum  ======================================================================
B D         Tasmanian devil  ======================================================================

                      Human  ---t--------------cccagcccctttaggttaccct
                      Chimp  ---t--------------cccagcccctttaagttaccct
                    Gorilla  ---t--------------cccagcctctttaggttaccct
                  Orangutan  ---t--------------cccagcccctttaggttacctt
                     Gibbon  ---c--------------cccagcccctttaggttacctt
                     Rhesus  ---t--------------cccagcccctttaggttaccct
        Crab-eating macaque  ---t--------------cccagcccctttaggttaccct
                     Baboon  ---t--------------cccagcccctttaggttaccct
               Green monkey  ---t--------------cccagcccctttaggttaccct
                   Marmoset  ---t--------------tccagcct------------ct
            Squirrel monkey  ---t--------------tccagcctc-ttaggctaccct
                   Bushbaby  ---t--------------tccagctcccttgagctaatct
         Chinese tree shrew  ---c--------------ccaaggcctttaaaattaacct
                   Squirrel  ---t--------------ccaagc-ccctttggctaacct
               Prairie vole  ---ccaattggctaactattatactcctactagctaacct
            Chinese hamster  ---tgtattgactaactactttac-cctactggctaatct
             Golden hamster  ---tctactggctaacaactttac-cctgctgactaacct
                      Mouse  ---t--------------cttagcccctactggctaactt
                        Rat  ---t--------------ctttgcccctactggctaacct
                     Rabbit  ------------------ctctgcaccttcaggctaacct
                       Pika  ------------------ttcagtccctt-----------
                     Alpaca  ---t--------------cccaggctcttcaggctgaccc
             Bactrian camel  ---t--------------cccaggctcttcaggctgaccc
                    Dolphin  ---t--------------cccagcctcttcaagctaaccc
               Killer whale  ---t--------------cccagcctcttcaagctaaccc
           Tibetan antelope  ---t--------------cccaacctcttcaagctaaccc
                        Cow  ---t--------------cccagcctcttcaagctaaccc
                      Sheep  ---t--------------cccaacc---tcaagctaaccc
              Domestic goat  ---t--------------cccaacc---tcaagctaaccc
                      Horse  ---c--------------cccaacctcttcagagttcccc
           White rhinoceros  ---t--------------cctaacctcttcaagttaactc
                        Cat  ---t--------------ggcagcatcttcagattaaccc
                        Dog  ---t--------------ctcagcctcttcagactaaccc
                    Ferret   ---t--------------cacagcctcttcagactaaccc
                      Panda  ---t--------------cgcagcctcttcagactaaccc
             Pacific walrus  ---c--------------ctcaacctcttcagactaaccc
               Weddell seal  ---t--------------ctcagcctcttcagactaaccc
           Black flying-fox  ---t--------------cctagcctcttgaggctaaccc
                    Megabat  ---t--------------cctagcctcttgaggctaaccc
              Big brown bat  ---t--------------cccagtctctttaggctaaccc
       David's myotis (bat)  cagt--------------cccagtctctttaggctaaccc
                   Microbat  ctat--------------cccagtctctttaggctaatcc
                      Shrew  ---t--------------cccagcatctttaggctgaccc
            Star-nosed mole  ---t--------------ctc---------aggttaactt
                   Elephant  ---c--------------tccagctccttcggtctaacct
                    Manatee  ---c--------------tccagccccttcggtctcacca
           Cape golden mole  ---c--------------tccagctcct-ctgggtcacct
                     Tenrec  ---c--------------tccagctcctgctggctcacca
                   Aardvark  ---c--------------tccacccccctctggctcacct
                  Armadillo  ---g--------------cccagcccctttgggctcacct
        Cape elephant shrew  ========================================
                   Hedgehog  ========================================
     Lesser Egyptian jerboa  ========================================
           Brush-tailed rat  ========================================
                 Chinchilla  ========================================
                 Guinea pig  ========================================
                        Pig  ========================================
             Naked mole-rat  ========================================
                    Opossum  ========================================
            Tasmanian devil  ========================================

Inserts between block 18 and 19 in window
B D               Bushbaby 235bp

Alignment block 19 of 1060 in window, 3846209 - 3846218, 10 bps 
B D                   Human  t----------------------aa-a-tctgaa
B D                   Chimp  t----------------------aa-a-tctgaa
B D                 Gorilla  t----------------------aa-a-tctgaa
B D               Orangutan  t----------------------aa-a-cctgaa
B D                  Gibbon  t----------------------aa-a-tctgaa
B D                  Rhesus  t----------------------aa-a-tctgaa
B D     Crab-eating macaque  t----------------------aa-a-tctgaa
B D                  Baboon  t----------------------aa-a-tctgaa
B D            Green monkey  t----------------------aa-a-tctgaa
B D                Marmoset  t----------------------aa-a-tctgaa
B D         Squirrel monkey  t----------------------aa-a-tctgaa
B D                Bushbaby  t----------------------aa-a-tctaaa
         Chinese tree shrew  t----------------------aatc-tctgaa
B D                Squirrel  t----------------------aa-t-tctaca
               Prairie vole  t----------------------aa-a-tcttaa
B D         Chinese hamster  t----------------------aa-a-tctaaa
             Golden hamster  t----------------------at-a-tctaaa
B D                   Mouse  t----------------------aa-a-t-----
B D                     Rat  t----------------------aa-a-c-----
B D                  Rabbit  tgatatgggcgagctaggcaggaaa-t-tctgga
B D                    Pika  -----tgggagagctagacagggaa-gatcagaa
B D                  Alpaca  t----------------------aa-a-tctgag
             Bactrian camel  t----------------------aa-a-tctgag
B D                 Dolphin  t----------------------aa-a-tctgag
               Killer whale  t----------------------aa-a-tctgag
           Tibetan antelope  t----------------------aa-a-tctgaa
B D                     Cow  t----------------------aa-a-tctgaa
B D                   Sheep  t----------------------aa-a-tctgaa
              Domestic goat  t----------------------aa-a-tctgaa
B D                   Horse  t----------------------ac-a-tctgag
B D        White rhinoceros  t----------------------ac-a-tctgag
B D                     Cat  t----------------------aa-t-tctgag
B D                     Dog  t----------------------aa-a-cctgag
B D                 Ferret   t----------------------aa-a-tctgag
B D                   Panda  a----------------------aa-a-tctgag
             Pacific walrus  t----------------------aa-a-tctgag
               Weddell seal  t----------------------aa-a-tctgag
           Black flying-fox  t----------------------aa-a-t-----
B D                 Megabat  t----------------------aa-a-t-----
              Big brown bat  t----------------------aa-a-tcaaag
       David's myotis (bat)  t----------------------aa-a-tcaaag
B D                Microbat  t----------------------aa-a-tcaaag
B D                   Shrew  c----------------------aa-g-ccagag
            Star-nosed mole  t----------------------aa-a-tctgag
B D                Elephant  t----------------------aa-g-tctgtg
B D                 Manatee  t----------------------aa-g-tctatg
           Cape golden mole  t----------------------aa-g-tttcct
B D                  Tenrec  c----------------------aa-g-tctacg
                   Aardvark  c----------------------aa-g-tctgtg
B D               Armadillo  t----------------------ag-a-tctatg
       Cape elephant shrew  ==================================
B D                Hedgehog  ==================================
    Lesser Egyptian jerboa  ==================================
          Brush-tailed rat  ==================================
                Chinchilla  ==================================
B D              Guinea pig  ==================================
B D                     Pig  ==================================
B D          Naked mole-rat  ==================================
B D                 Opossum  ==================================
B D         Tasmanian devil  ==================================

Inserts between block 19 and 20 in window
          Tibetan antelope 205bp
B D                    Cow 204bp
B D                  Sheep 205bp
             Domestic goat 205bp

Alignment block 20 of 1060 in window, 3846219 - 3846220, 2 bps 
B D                   Human  tt
B D                   Chimp  tt
B D                 Gorilla  tt
B D               Orangutan  tt
B D                  Gibbon  tt
B D                  Rhesus  tt
B D     Crab-eating macaque  tt
B D                  Baboon  tt
B D            Green monkey  tt
B D                Marmoset  tt
B D         Squirrel monkey  tt
B D                Bushbaby  tt
         Chinese tree shrew  tc
B D                Squirrel  tt
               Prairie vole  tc
B D         Chinese hamster  tt
             Golden hamster  tt
B D                  Rabbit  tt
B D                    Pika  tt
B D                  Alpaca  tt
             Bactrian camel  tt
B D                 Dolphin  tt
               Killer whale  tt
B D                   Sheep  ct
B D                   Horse  tt
B D        White rhinoceros  tt
B D                     Cat  tt
B D                     Dog  tt
B D                 Ferret   ta
B D                   Panda  tt
             Pacific walrus  tt
               Weddell seal  tt
              Big brown bat  tt
       David's myotis (bat)  tc
B D                Microbat  tt
B D                   Shrew  ct
B D                Elephant  tt
B D                 Manatee  tt
           Cape golden mole  tt
B D                  Tenrec  tt
                   Aardvark  tt
B D               Armadillo  tt
           Star-nosed mole  --
       Cape elephant shrew  ==
B D                Hedgehog  ==
B D                   Mouse  --
B D                     Rat  --
          Black flying-fox  --
    Lesser Egyptian jerboa  ==
          Brush-tailed rat  ==
                Chinchilla  ==
B D              Guinea pig  ==
B D                     Pig  ==
B D                 Megabat  --
B D                     Cow  ==
             Domestic goat  ==
          Tibetan antelope  ==
B D          Naked mole-rat  ==
B D                 Opossum  ==
B D         Tasmanian devil  ==

Alignment block 21 of 1060 in window, 3846221 - 3846277, 57 bps 
B D                   Human  ctcttttgcct-----------------------ctgctgtggctccaggggact-cagccttctt----
B D                   Chimp  ctcttttgcct-----------------------ctgctgtggctccaggggact-cagccttctt----
B D                 Gorilla  ctcttttgcct-----------------------ctgctgtggctccaggggact-cagccttctt----
B D               Orangutan  ctcttttgcct-----------------------ctgctgtggctccaggggact-cagccttctt----
B D                  Gibbon  ctcttttgcct-----------------------cagctgtggctccaagggact-cagccttctt----
B D                  Rhesus  ctcttttgcct-----------------------ctgctgtggctccaaggcact-caggcttctt----
B D     Crab-eating macaque  ctcttttgcct-----------------------ctgctgtggctccaaggcact-caggcttctt----
B D                  Baboon  ctcttttgtct-----------------------ctgctgtggctccaaggcact-caggcttctt----
B D            Green monkey  ctcttttgcct-----------------------ctgctgtggctccaaggcact-caggcttctt----
B D                Marmoset  ctcctttgcct-----------------------ctgctgtggccccaggg-act-cagccttctt----
B D         Squirrel monkey  ctcctttgcct-----------------------ctgctgtggctccaggg-act-cagccttctt----
B D                Bushbaby  cttgttggtct-----------------------ctaatatggcatgagaa-att-cagtcttctc----
         Chinese tree shrew  cccctttgtct-----------------------ctgatgtggctccaggg-agt-cagcctcctt----
B D                Squirrel  ctccttcgtct-----------------------ttgatgtggcttcaagt-act-cagcctactt----
               Prairie vole  ctccttcatct-----------------------ctgatgtggcttcagggaact-cagttttctc----
B D         Chinese hamster  ctctgtagtct-----------------------ctgatgtggcttaggggaactccagatttctc----
             Golden hamster  ctccttagtct-----------------------ctgatgt-gcttaggggaact-cagctttccc----
B D                   Mouse  --------------------------------------tgtggcttcagggaact-cagctttctc----
B D                     Rat  --------------------------------------tgtggcttcagggaact-cagccttctt----
B D                  Rabbit  cttgt----ct-----------------------ctacactggctccaggg--cc------ttctt----
B D                    Pika  ttttttgacct-----------------------ctactgtggttcccggg--cc---------------
B D                  Alpaca  cttctttgtct-----------------------ctgat---------ggg-act-cagcct-ttt----
             Bactrian camel  cttctttgtct-----------------------ctgat---------ggg-act-cagcct-ttt----
B D                 Dolphin  cttctttttct-----------------------ctcatgtggctccaggg-act-cagccgtctt----
               Killer whale  cttctttttct-----------------------ctcatgtggctccaggg-act-cagccgtctt----
           Tibetan antelope  -ctctttttct-----------------------ctgatgtggctccaggg-act-caactg--------
B D                     Cow  -ctctttttct-----------------------ctgatgtggctccaggg-act-caattg--------
B D                   Sheep  ---ctttttct-----------------------ctgatgtggctccaggg-act-caactg--------
              Domestic goat  -ctctttttct-----------------------ctgatgtggctccaggg-act-caactg--------
B D                   Horse  cccctttgtct-----------------------ctgatgtggctccaagg-act-cagccttctt----
B D        White rhinoceros  tccctttgtct-----------------------ctgacgtggctccaaag-act-cagccttctt----
B D                     Cat  gtcctttttctgatgtggcttaggggactcaggcttggtg------------------------------
B D                     Dog  ttcctttgtct-----------------------ctgatg------------------------------
B D                 Ferret   ttcctttgtct-----------------------ctggtg------------------------------
B D                   Panda  ttcctttgtct-----------------------ctgatg------------------------------
             Pacific walrus  ttcctttgtct-----------------------ctgatg------------------------------
               Weddell seal  ttcctttgtct-----------------------ctgatg------------------------------
           Black flying-fox  ---ctttgtct-----------------------ctgatgtggctccaggg-att-caacctcctt----
B D                 Megabat  ---ctttgtct-----------------------ctgatgtggctccaggg-act-caacctcctt----
              Big brown bat  ctcctttgact-----------------------ctgatgtagttctaggg-acc-tcacct-ctt----
       David's myotis (bat)  ctcctttgact-----------------------cagatgtggttctaggg-acc-tcacct-ctt----
B D                Microbat  ctcctttgact-----------------------ctgatgtggttctaggg-acc-tctcct-ctt----
B D                   Shrew  ---tcttgtct-----------------------ctgatgtagctccagtg-acc-cagcctgtttgaag
            Star-nosed mole  ----tttgtct-----------------------ttgatgtggctccaggg-act-tagccttctt----
B D                Elephant  ctcctttgtct-----------------------ctgatgtggctctagca-att-tagacttctt----
B D                 Manatee  ctcctttgttt-----------------------ctgatgtggctccaggg-act-tagccttttt----
           Cape golden mole  ctcctttgcct-----------------------ttgatgtggctccaggg-att-tag-----------
B D                  Tenrec  ctctttggcct-----------------------ctggtgtggt--------------------------
                   Aardvark  ctcctttatct-----------------------ctgatgtggctccaggg-act-tagccttctt----
B D               Armadillo  ctc------------------------------------------------------agccatctt----
       Cape elephant shrew  ======================================================================
B D                Hedgehog  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
          Brush-tailed rat  ======================================================================
                Chinchilla  ======================================================================
B D              Guinea pig  ======================================================================
B D                     Pig  ======================================================================
B D          Naked mole-rat  ======================================================================
B D                 Opossum  ======================================================================
B D         Tasmanian devil  ======================================================================

                      Human  ---------ggggctcctcttgat
                      Chimp  ---------ggggctcctcttgat
                    Gorilla  ---------ggggctcctcttgat
                  Orangutan  ---------ggggctcctcttgat
                     Gibbon  ---------ggggctcctcttgat
                     Rhesus  ---------ggggctcctcttgat
        Crab-eating macaque  ---------ggggctcctcttgat
                     Baboon  ---------ggggctcctcttgat
               Green monkey  ---------ggggctcctcttgat
                   Marmoset  ---------ggagtgcctcttgat
            Squirrel monkey  ---------ggagctcctcttgat
                   Bushbaby  ---------ggggctcctc-tgat
         Chinese tree shrew  ---------gggaatctacctgat
                   Squirrel  ---------gggtctcctcttgat
               Prairie vole  ---------tgggctcctctcaat
            Chinese hamster  ---------tgggctcctcttaat
             Golden hamster  ---------tgggctcctcttgat
                      Mouse  ---------tgggctcctctt---
                        Rat  ---------tgggctcctctt---
                     Rabbit  ---------ggtgttctttttgat
                       Pika  -------------------ttggc
                     Alpaca  ---------gggtctcctcttgat
             Bactrian camel  ---------gggtctcctcttgat
                    Dolphin  ---------ggttctcctcttgat
               Killer whale  ---------ggttctcctcttgat
           Tibetan antelope  -----------------tcttgat
                        Cow  -----------------tcttgat
                      Sheep  -----------------tcttgat
              Domestic goat  -----------------tcttgat
                      Horse  ---------ggggctcctcttgat
           White rhinoceros  ---------cgggctcctcttgat
                        Cat  ----------gggctcctcttggt
                        Dog  ----------gggctcctcttgat
                    Ferret   ----------gggctcctcttgat
                      Panda  ----------gggcccctcttgat
             Pacific walrus  ----------gggctcctcttgat
               Weddell seal  ----------gggcttctcttgat
           Black flying-fox  ---------ggggctcctcttgat
                    Megabat  ---------ggggctcctcttgat
              Big brown bat  ---------aggactcctctgtat
       David's myotis (bat)  ---------gggactcctctgtat
                   Microbat  ---------gggactcctctgtat
                      Shrew  attagaaaaggggtgcccctt---
            Star-nosed mole  ---------gggactcctcttaat
                   Elephant  ---------agagcccctcctaat
                    Manatee  ---------ggagctcctcctaat
           Cape golden mole  ------------tttaatccttt-
                     Tenrec  ------------gttcctcctttt
                   Aardvark  ---------ggtgctcctcctaat
                  Armadillo  ---------ggggctcctcctgat
        Cape elephant shrew  ========================
                   Hedgehog  ========================
     Lesser Egyptian jerboa  ========================
           Brush-tailed rat  ========================
                 Chinchilla  ========================
                 Guinea pig  ========================
                        Pig  ========================
             Naked mole-rat  ========================
                    Opossum  ========================
            Tasmanian devil  ========================

Inserts between block 21 and 22 in window
           Star-nosed mole 25bp

Alignment block 22 of 1060 in window, 3846278 - 3846290, 13 bps 
B D                   Human  cctttggtcttcc
B D                   Chimp  cctttggtcttcc
B D                 Gorilla  cctttggtcttcc
B D               Orangutan  cctttggtcttcc
B D                  Gibbon  cctttggtcttcc
B D                  Rhesus  cctttggtcttcc
B D     Crab-eating macaque  cctttggtcttcc
B D                  Baboon  cctttggtcttcc
B D            Green monkey  cctttggtcttcc
B D                Marmoset  ccattggtcttcc
B D         Squirrel monkey  ccgttggtcttcc
B D                Bushbaby  -------tcttct
         Chinese tree shrew  cccgtggtctta-
B D                Squirrel  cccttgctctttc
               Prairie vole  ccctgggcctt--
B D         Chinese hamster  cccttggtcac--
             Golden hamster  cccttggtctt--
B D                   Mouse  -----ggccta--
B D                     Rat  -----ggcctg--
B D                  Rabbit  cccttggcctt--
B D                    Pika  tttttggtctt--
B D                  Alpaca  tcccttgtcttct
             Bactrian camel  tcccttgtcttct
B D                 Dolphin  cccctggccttcc
               Killer whale  cccctggccttcc
           Tibetan antelope  tctctggtcttcc
B D                     Cow  tccctggtcttcc
B D                   Sheep  tccctggtcttcc
              Domestic goat  tccctggtcttcc
B D                   Horse  tccctggtctttc
B D        White rhinoceros  tccctggtc--tc
B D                     Cat  cccctggtgttcc
B D                     Dog  tccctggtgctcc
B D                 Ferret   tccctggtgttac
B D                   Panda  tccctggtgttcc
             Pacific walrus  tccctggtgttct
               Weddell seal  tccctggtgttct
           Black flying-fox  tccttgctctttt
B D                 Megabat  tccttgccctttt
              Big brown bat  tccctgctcttcc
       David's myotis (bat)  tccctgttcttcc
B D                Microbat  tccctgttcttcc
B D                   Shrew  tcattg--ctacc
B D                Elephant  cccttagtcttcc
B D                 Manatee  tccttagtcttcc
           Cape golden mole  ----agcttttc-
B D                  Tenrec  ccccaggtcttc-
                   Aardvark  tccttactcttcc
B D               Armadillo  tccttggtcttcc
           Star-nosed mole  =============
       Cape elephant shrew  =============
B D                Hedgehog  =============
    Lesser Egyptian jerboa  =============
          Brush-tailed rat  =============
                Chinchilla  =============
B D              Guinea pig  =============
B D                     Pig  =============
B D          Naked mole-rat  =============
B D                 Opossum  =============
B D         Tasmanian devil  =============

Inserts between block 22 and 23 in window
B D                 Tenrec 21bp

Alignment block 23 of 1060 in window, 3846291 - 3846301, 11 bps 
B D                   Human  ctctctcagcc
B D                   Chimp  ctctctcagcc
B D                 Gorilla  ctctctcagcc
B D               Orangutan  ctctctcagac
B D                  Gibbon  ctctctcagcc
B D                  Rhesus  ctctctcagct
B D     Crab-eating macaque  ctctctcagct
B D                  Baboon  ctctctcagct
B D            Green monkey  ctctctcagct
B D                Marmoset  ctctctctgcc
B D         Squirrel monkey  ctctctctgcc
B D                Bushbaby  ctcactcacct
         Chinese tree shrew  ctctgtctgcc
B D                Squirrel  ttctctcagcc
               Prairie vole  ---tctcagcc
B D         Chinese hamster  ---tttcagtc
             Golden hamster  ---tctcagtc
B D                   Mouse  ---tctcagcc
B D                     Rat  ---tctcagtc
B D                  Rabbit  --ctctcaatc
B D                    Pika  --ccctc--tc
B D                  Alpaca  ctctttcaccc
             Bactrian camel  ctctctcaccc
B D                 Dolphin  ctctttcaggc
               Killer whale  ctctttcaggc
           Tibetan antelope  ctttctcaacc
B D                     Cow  ctttctcaacc
B D                   Sheep  ctttctcaacc
              Domestic goat  ctttctcaacc
B D                   Horse  ttctcttagcc
B D        White rhinoceros  ttctctcagcc
B D                     Cat  ctctctcagcc
B D                     Dog  ctctctcagcc
B D                 Ferret   --ctctcatcc
B D                   Panda  ctctctcaatc
             Pacific walrus  ctctctcagcc
               Weddell seal  ctctctcagcc
           Black flying-fox  t-ctctctgtc
B D                 Megabat  t-ctctctgtc
              Big brown bat  ctctctcagtc
       David's myotis (bat)  cactctcagtc
B D                Microbat  cactctcagtc
B D                   Shrew  ctcccccaccc
B D                Elephant  ctttctcatcc
B D                 Manatee  ctttctcagcc
           Cape golden mole  ctttcttagcc
                   Aardvark  gtttctcagcc
B D               Armadillo  --tcctcaacc
           Star-nosed mole  ===========
       Cape elephant shrew  ===========
B D                Hedgehog  ===========
    Lesser Egyptian jerboa  ===========
B D                  Tenrec  ===========
          Brush-tailed rat  ===========
                Chinchilla  ===========
B D              Guinea pig  ===========
B D                     Pig  ===========
B D          Naked mole-rat  ===========
B D                 Opossum  ===========
B D         Tasmanian devil  ===========

Inserts between block 23 and 24 in window
B D                 Rabbit 512bp
B D                   Pika 1bp

Alignment block 24 of 1060 in window, 3846302 - 3846302, 1 bps 
B D                   Human  a
B D                   Chimp  a
B D                 Gorilla  a
B D               Orangutan  a
B D                  Gibbon  a
B D                  Rhesus  g
B D     Crab-eating macaque  g
B D                  Baboon  g
B D            Green monkey  g
B D                Marmoset  t
B D         Squirrel monkey  c
B D                Bushbaby  t
         Chinese tree shrew  t
B D                Squirrel  t
               Prairie vole  t
B D         Chinese hamster  t
             Golden hamster  t
B D                   Mouse  c
B D                     Rat  a
B D                  Alpaca  t
             Bactrian camel  t
B D                 Dolphin  t
               Killer whale  t
           Tibetan antelope  t
B D                     Cow  t
B D                   Sheep  t
              Domestic goat  t
B D                   Horse  t
B D        White rhinoceros  t
B D                     Cat  t
B D                     Dog  t
B D                 Ferret   t
B D                   Panda  t
             Pacific walrus  t
               Weddell seal  t
           Black flying-fox  t
B D                 Megabat  t
              Big brown bat  t
       David's myotis (bat)  t
B D                Microbat  t
B D                   Shrew  a
B D                Elephant  t
B D                 Manatee  t
           Cape golden mole  t
                   Aardvark  t
B D               Armadillo  g
           Star-nosed mole  =
B D                    Pika  =
       Cape elephant shrew  =
B D                Hedgehog  =
B D                  Rabbit  =
    Lesser Egyptian jerboa  =
B D                  Tenrec  =
          Brush-tailed rat  =
                Chinchilla  =
B D              Guinea pig  =
B D                     Pig  =
B D          Naked mole-rat  =
B D                 Opossum  =
B D         Tasmanian devil  =

Inserts between block 24 and 25 in window
B D                  Shrew 108bp

Alignment block 25 of 1060 in window, 3846303 - 3846305, 3 bps 
B D                   Human  gcc
B D                   Chimp  gcc
B D                 Gorilla  gcc
B D               Orangutan  gcc
B D                  Gibbon  gcc
B D                  Rhesus  gcc
B D     Crab-eating macaque  gcc
B D                  Baboon  gcc
B D            Green monkey  gcc
B D                Marmoset  gcc
B D         Squirrel monkey  gcc
B D                Bushbaby  gcc
         Chinese tree shrew  gtc
B D                Squirrel  gcc
               Prairie vole  gcc
B D         Chinese hamster  acc
             Golden hamster  gcc
B D                   Mouse  act
B D                     Rat  gcc
B D                    Pika  ggc
B D                  Alpaca  tcc
             Bactrian camel  tcc
B D                 Dolphin  gcc
               Killer whale  gcc
           Tibetan antelope  gcc
B D                     Cow  gcc
B D                   Sheep  gcc
              Domestic goat  gcc
B D                   Horse  gcc
B D        White rhinoceros  gcc
B D                     Cat  gcc
B D                     Dog  gcc
B D                 Ferret   acc
B D                   Panda  gcc
             Pacific walrus  gcc
               Weddell seal  gcc
           Black flying-fox  gcc
B D                 Megabat  gcc
              Big brown bat  gtc
       David's myotis (bat)  gcc
B D                Microbat  gtc
B D                Elephant  gcc
B D                 Manatee  gcc
           Cape golden mole  gtc
                   Aardvark  gtc
B D               Armadillo  gcc
           Star-nosed mole  ===
       Cape elephant shrew  ===
B D                Hedgehog  ===
B D                   Shrew  ===
B D                  Rabbit  ===
    Lesser Egyptian jerboa  ===
B D                  Tenrec  ===
          Brush-tailed rat  ===
                Chinchilla  ===
B D              Guinea pig  ===
B D                     Pig  ===
B D          Naked mole-rat  ===
B D                 Opossum  ===
B D         Tasmanian devil  ===

Inserts between block 25 and 26 in window
                  Aardvark 1bp

Alignment block 26 of 1060 in window, 3846306 - 3846306, 1 bps 
B D                   Human  t
B D                   Chimp  t
B D                 Gorilla  t
B D               Orangutan  t
B D                  Gibbon  t
B D                  Rhesus  t
B D     Crab-eating macaque  t
B D                  Baboon  t
B D            Green monkey  t
B D                Marmoset  t
B D         Squirrel monkey  t
B D                Bushbaby  t
         Chinese tree shrew  t
B D                Squirrel  t
               Prairie vole  t
B D         Chinese hamster  t
             Golden hamster  t
B D                   Mouse  g
B D                     Rat  a
B D                    Pika  t
B D                  Alpaca  t
             Bactrian camel  t
B D                 Dolphin  t
               Killer whale  t
           Tibetan antelope  t
B D                     Cow  t
B D                   Sheep  t
              Domestic goat  t
B D                   Horse  t
B D        White rhinoceros  t
B D                     Cat  t
B D                 Ferret   t
B D                   Panda  t
             Pacific walrus  t
               Weddell seal  t
           Black flying-fox  t
B D                 Megabat  t
              Big brown bat  t
       David's myotis (bat)  t
B D                Microbat  t
B D                Elephant  t
B D                 Manatee  t
           Cape golden mole  t
                   Aardvark  t
B D               Armadillo  g
           Star-nosed mole  =
       Cape elephant shrew  =
B D                Hedgehog  =
B D                   Shrew  =
B D                  Rabbit  =
    Lesser Egyptian jerboa  =
B D                  Tenrec  =
          Brush-tailed rat  =
                Chinchilla  =
B D              Guinea pig  =
B D                     Pig  =
B D          Naked mole-rat  =
B D                     Dog  -
B D                 Opossum  =
B D         Tasmanian devil  =

Inserts between block 26 and 27 in window
B D                Ferret  6bp
B D                  Panda 6bp
            Pacific walrus 3bp
              Weddell seal 3bp

Alignment block 27 of 1060 in window, 3846307 - 3846316, 10 bps 
B D                   Human  caggagtag----a
B D                   Chimp  caggagtag----a
B D                 Gorilla  caggagtag----a
B D               Orangutan  ca-gagtag----a
B D                  Gibbon  taggagtag----a
B D                  Rhesus  caggagtag----a
B D     Crab-eating macaque  caggagtag----a
B D                  Baboon  caggagtag----a
B D            Green monkey  caagagtag----a
B D                Marmoset  caagagtag----a
B D         Squirrel monkey  caagagtag----a
B D                Bushbaby  gaggagtag----a
         Chinese tree shrew  gaaatgtag----a
B D                Squirrel  gaggagtag--a--
               Prairie vole  gagaagtag-----
B D         Chinese hamster  gagaagtaga----
             Golden hamster  gagaagtag-----
B D                   Mouse  tagaattag-a---
B D                     Rat  gagagacag-----
B D                    Pika  gagaagtca---t-
B D                  Alpaca  ---gagtag----a
             Bactrian camel  ---gggtag----a
B D                 Dolphin  ---gagcgg----a
               Killer whale  ---gagcgg----a
           Tibetan antelope  ---gagtag----a
B D                     Cow  ---gagtag----a
B D                   Sheep  ---gagtag----a
              Domestic goat  ---gagtag----a
B D                   Horse  gaagagcag----g
B D        White rhinoceros  gaagagtag----a
B D                 Ferret   gagaaatag----g
B D                   Panda  gagaagtag----g
             Pacific walrus  gagaagtag----g
               Weddell seal  gagaagtag----g
           Black flying-fox  gaggagtgg----a
B D                 Megabat  gaggagtgg----a
              Big brown bat  gaagagtgg----a
       David's myotis (bat)  gaagagtgg----a
B D                Microbat  gaagagtgg----a
B D                Elephant  gagaagcag----a
B D                 Manatee  gaggagtag----a
           Cape golden mole  gaggagtag----a
                   Aardvark  gaggcatag----a
B D               Armadillo  gagttgtga----a
           Star-nosed mole  ==============
       Cape elephant shrew  ==============
B D                Hedgehog  ==============
B D                   Shrew  ==============
B D                  Rabbit  ==============
    Lesser Egyptian jerboa  ==============
B D                  Tenrec  ==============
          Brush-tailed rat  ==============
                Chinchilla  ==============
B D              Guinea pig  ==============
B D                     Pig  ==============
B D          Naked mole-rat  ==============
B D                     Dog  --------------
B D                     Cat  --------------
B D                 Opossum  ==============
B D         Tasmanian devil  ==============

Inserts between block 27 and 28 in window
B D        Chinese hamster 4bp
B D                  Mouse 4bp

Alignment block 28 of 1060 in window, 3846317 - 3846317, 1 bps 
B D                   Human  a
B D                   Chimp  a
B D                 Gorilla  a
B D               Orangutan  a
B D                  Gibbon  a
B D                  Rhesus  a
B D     Crab-eating macaque  a
B D                  Baboon  a
B D            Green monkey  a
B D                Marmoset  a
B D         Squirrel monkey  a
B D                Bushbaby  a
         Chinese tree shrew  t
B D                Squirrel  a
B D                    Pika  a
B D                  Alpaca  a
             Bactrian camel  a
B D                 Dolphin  a
               Killer whale  a
           Tibetan antelope  a
B D                     Cow  a
B D                   Sheep  a
              Domestic goat  a
B D                   Horse  a
B D        White rhinoceros  a
B D                 Ferret   a
B D                   Panda  a
             Pacific walrus  a
               Weddell seal  a
           Black flying-fox  a
B D                 Megabat  a
              Big brown bat  a
       David's myotis (bat)  a
B D                Microbat  a
B D                Elephant  a
B D                 Manatee  a
           Cape golden mole  a
                   Aardvark  a
B D               Armadillo  a
           Star-nosed mole  =
       Cape elephant shrew  =
B D                Hedgehog  =
B D                   Shrew  =
B D                   Mouse  =
              Prairie vole  -
B D                     Rat  -
B D         Chinese hamster  =
            Golden hamster  -
B D                  Rabbit  =
    Lesser Egyptian jerboa  =
B D                  Tenrec  =
          Brush-tailed rat  =
                Chinchilla  =
B D              Guinea pig  =
B D                     Pig  =
B D          Naked mole-rat  =
B D                     Dog  -
B D                     Cat  -
B D                 Opossum  =
B D         Tasmanian devil  =

Inserts between block 28 and 29 in window
B D               Bushbaby 7bp
B D                 Alpaca 5bp
            Bactrian camel 5bp
B D                Dolphin 3bp
              Killer whale 3bp
          Tibetan antelope 6bp
B D                    Cow 6bp
B D                  Sheep 2bp
             Domestic goat 6bp
B D                  Horse 2bp
B D       White rhinoceros 8bp
B D                Ferret  1bp
B D                  Panda 2bp
            Pacific walrus 2bp
              Weddell seal 2bp
          Black flying-fox 2bp
B D                Megabat 2bp
             Big brown bat 2bp
      David's myotis (bat) 2bp
B D               Microbat 8bp

Alignment block 29 of 1060 in window, 3846318 - 3846322, 5 bps 
B D                   Human  cacag
B D                   Chimp  cacag
B D                 Gorilla  cacag
B D               Orangutan  cacag
B D                  Gibbon  cacag
B D                  Rhesus  cacag
B D     Crab-eating macaque  cacag
B D                  Baboon  cacag
B D            Green monkey  tacag
B D                Marmoset  cacag
B D         Squirrel monkey  cacag
         Chinese tree shrew  ctcag
B D                Squirrel  tgctg
               Prairie vole  -tctg
             Golden hamster  -acag
B D                     Rat  -acag
B D                    Pika  cacag
B D                  Alpaca  ---ag
             Bactrian camel  ---ag
B D                 Dolphin  -cgag
               Killer whale  -cgag
B D                   Sheep  gggag
           Black flying-fox  gggag
B D                 Megabat  gggag
              Big brown bat  agaag
       David's myotis (bat)  ggaag
B D                Elephant  cacag
B D                 Manatee  cacag
           Cape golden mole  tac--
                   Aardvark  cacag
B D               Armadillo  cagta
           Star-nosed mole  =====
       Cape elephant shrew  =====
B D                Hedgehog  =====
B D                   Shrew  =====
B D                   Mouse  =====
B D         Chinese hamster  =====
B D                  Rabbit  =====
    Lesser Egyptian jerboa  =====
B D                  Tenrec  =====
          Brush-tailed rat  =====
                Chinchilla  =====
B D              Guinea pig  =====
B D                     Pig  =====
              Weddell seal  =====
B D                   Panda  =====
B D                     Cow  =====
             Domestic goat  =====
          Tibetan antelope  =====
B D                Microbat  =====
B D        White rhinoceros  =====
B D                   Horse  =====
B D          Naked mole-rat  =====
B D                     Dog  -----
B D                 Ferret   =====
B D                     Cat  -----
            Pacific walrus  =====
B D                 Opossum  =====
B D         Tasmanian devil  =====
B D                Bushbaby  =====

Inserts between block 29 and 30 in window
B D                   Pika 5bp

Alignment block 30 of 1060 in window, 3846323 - 3846323, 1 bps 
B D                   Human  t
B D                   Chimp  t
B D                 Gorilla  t
B D               Orangutan  t
B D                  Gibbon  t
B D                  Rhesus  t
B D     Crab-eating macaque  t
B D                  Baboon  t
B D            Green monkey  t
B D                Marmoset  t
B D         Squirrel monkey  t
         Chinese tree shrew  t
B D                Squirrel  t
               Prairie vole  t
             Golden hamster  t
B D                     Rat  t
B D                  Alpaca  t
             Bactrian camel  t
B D                 Dolphin  t
               Killer whale  t
B D                   Sheep  t
           Black flying-fox  t
B D                 Megabat  t
              Big brown bat  t
       David's myotis (bat)  t
B D                Elephant  t
B D                 Manatee  t
                   Aardvark  t
B D               Armadillo  t
           Star-nosed mole  =
B D                    Pika  =
       Cape elephant shrew  =
B D                Hedgehog  =
B D                   Shrew  =
B D                   Mouse  =
B D         Chinese hamster  =
B D                  Rabbit  =
    Lesser Egyptian jerboa  =
B D                  Tenrec  =
          Brush-tailed rat  =
                Chinchilla  =
B D              Guinea pig  =
B D                     Pig  =
              Weddell seal  =
B D                   Panda  =
B D                     Cow  =
             Domestic goat  =
          Tibetan antelope  =
B D                Microbat  =
B D        White rhinoceros  =
B D                   Horse  =
B D          Naked mole-rat  =
B D                     Dog  -
B D                 Ferret   =
B D                     Cat  -
            Pacific walrus  =
B D                 Opossum  =
B D         Tasmanian devil  =
          Cape golden mole  -
B D                Bushbaby  =

Alignment block 31 of 1060 in window, 3846324 - 3846326, 3 bps 
B D                   Human  ttc
B D                   Chimp  ttc
B D                 Gorilla  ttc
B D               Orangutan  ttc
B D                  Gibbon  ttc
B D                  Rhesus  ttc
B D     Crab-eating macaque  ttc
B D                  Baboon  ttt
B D            Green monkey  ttc
B D                Marmoset  tgc
B D         Squirrel monkey  tgc
               Prairie vole  ttc
             Golden hamster  ttc
B D                  Alpaca  ctc
             Bactrian camel  ctc
B D                 Dolphin  ctc
               Killer whale  ctc
B D                   Sheep  ctt
B D                   Horse  ctc
B D                 Ferret   tct
B D                   Panda  ctc
           Black flying-fox  -ct
B D                 Megabat  -ct
B D                Elephant  cac
B D                 Manatee  ctc
           Cape golden mole  ctc
                   Aardvark  ctc
B D               Armadillo  ttc
           Star-nosed mole  ===
B D                    Pika  ===
       Cape elephant shrew  ===
B D                Hedgehog  ===
B D                   Shrew  ===
B D                   Mouse  ===
B D                     Rat  ---
B D         Chinese hamster  ===
B D                  Rabbit  ===
    Lesser Egyptian jerboa  ===
B D                  Tenrec  ===
          Brush-tailed rat  ===
                Chinchilla  ===
B D              Guinea pig  ===
B D                     Pig  ===
              Weddell seal  ===
             Big brown bat  ---
B D                     Cow  ===
             Domestic goat  ===
          Tibetan antelope  ===
B D                Microbat  ===
      David's myotis (bat)  ---
B D        White rhinoceros  ===
B D                Squirrel  ---
        Chinese tree shrew  ---
B D          Naked mole-rat  ===
B D                     Dog  ---
B D                     Cat  ---
            Pacific walrus  ===
B D                 Opossum  ===
B D         Tasmanian devil  ===
B D                Bushbaby  ===

Alignment block 32 of 1060 in window, 3846327 - 3846327, 1 bps 
B D                   Human  c
B D                   Chimp  c
B D                 Gorilla  c
B D               Orangutan  c
B D                  Gibbon  c
B D                  Rhesus  c
B D     Crab-eating macaque  c
B D                  Baboon  c
B D            Green monkey  c
B D                Marmoset  c
B D         Squirrel monkey  c
B D                     Rat  c
B D                  Alpaca  a
             Bactrian camel  a
B D                 Dolphin  c
               Killer whale  c
B D                   Sheep  c
B D                   Horse  t
B D                 Ferret   c
B D                   Panda  c
           Black flying-fox  c
B D                 Megabat  c
B D                Elephant  c
B D                 Manatee  c
                   Aardvark  c
           Star-nosed mole  =
B D                    Pika  =
       Cape elephant shrew  =
B D                Hedgehog  =
B D                   Shrew  =
B D                   Mouse  =
              Prairie vole  -
B D         Chinese hamster  =
            Golden hamster  -
B D                  Rabbit  =
    Lesser Egyptian jerboa  =
B D                  Tenrec  =
          Brush-tailed rat  =
                Chinchilla  =
B D              Guinea pig  =
B D                     Pig  =
              Weddell seal  =
             Big brown bat  -
B D                     Cow  =
             Domestic goat  =
          Tibetan antelope  =
B D                Microbat  =
      David's myotis (bat)  -
B D               Armadillo  -
B D        White rhinoceros  =
B D                Squirrel  -
        Chinese tree shrew  -
B D          Naked mole-rat  =
B D                     Dog  -
B D                     Cat  -
            Pacific walrus  =
B D                 Opossum  =
B D         Tasmanian devil  =
          Cape golden mole  -
B D                Bushbaby  =

Alignment block 33 of 1060 in window, 3846328 - 3846329, 2 bps 
B D                   Human  tc
B D                   Chimp  tc
B D                 Gorilla  tc
B D               Orangutan  tc
B D                  Gibbon  tc
B D                  Rhesus  tc
B D     Crab-eating macaque  tc
B D                  Baboon  tc
B D            Green monkey  tc
B D                Marmoset  tc
B D         Squirrel monkey  tc
B D                     Rat  tc
B D                  Alpaca  cc
             Bactrian camel  cc
B D                 Dolphin  tg
               Killer whale  tg
B D                   Sheep  cc
B D                   Horse  cc
B D                 Ferret   cc
B D                   Panda  cc
           Black flying-fox  cc
B D                 Megabat  cc
B D                 Manatee  -c
           Cape golden mole  cc
B D               Armadillo  -c
           Star-nosed mole  ==
B D                    Pika  ==
       Cape elephant shrew  ==
B D                Hedgehog  ==
B D                   Shrew  ==
B D                   Mouse  ==
              Prairie vole  --
B D         Chinese hamster  ==
            Golden hamster  --
B D                  Rabbit  ==
    Lesser Egyptian jerboa  ==
B D                  Tenrec  ==
          Brush-tailed rat  ==
                Chinchilla  ==
B D              Guinea pig  ==
B D                     Pig  ==
              Weddell seal  ==
             Big brown bat  --
B D                     Cow  ==
             Domestic goat  ==
          Tibetan antelope  ==
B D                Microbat  ==
      David's myotis (bat)  --
B D                Elephant  --
B D        White rhinoceros  ==
B D                Squirrel  --
        Chinese tree shrew  --
B D          Naked mole-rat  ==
B D                     Dog  --
B D                     Cat  --
            Pacific walrus  ==
B D                 Opossum  ==
B D         Tasmanian devil  ==
                  Aardvark  --
B D                Bushbaby  ==

Alignment block 34 of 1060 in window, 3846330 - 3846337, 8 bps 
B D                   Human  ttcattat
B D                   Chimp  ttcattat
B D                 Gorilla  ttcattat
B D               Orangutan  ttcattat
B D                  Gibbon  ttcattat
B D                  Rhesus  ttcattac
B D     Crab-eating macaque  ttcattac
B D                  Baboon  ttcattac
B D            Green monkey  ttcattac
B D                Marmoset  ttcattac
B D         Squirrel monkey  ttcattac
B D                     Rat  ttcactac
B D                  Alpaca  cttattac
             Bactrian camel  ctcattac
B D                 Dolphin  ctcattat
               Killer whale  ctcattat
B D                   Sheep  ctcctcat
B D                   Horse  tttattgc
B D                 Ferret   ctcattac
B D                   Panda  ttcattac
           Black flying-fox  ttcattgc
B D                 Megabat  ttcattgc
B D                 Manatee  ttcattgt
           Cape golden mole  ttcattgc
           Star-nosed mole  ========
B D                    Pika  ========
       Cape elephant shrew  ========
B D                Hedgehog  ========
B D                   Shrew  ========
B D                   Mouse  ========
              Prairie vole  --------
B D         Chinese hamster  ========
            Golden hamster  --------
B D                  Rabbit  ========
    Lesser Egyptian jerboa  ========
B D                  Tenrec  ========
          Brush-tailed rat  ========
                Chinchilla  ========
B D              Guinea pig  ========
B D                     Pig  ========
              Weddell seal  ========
             Big brown bat  --------
B D                     Cow  ========
             Domestic goat  ========
          Tibetan antelope  ========
B D                Microbat  ========
      David's myotis (bat)  --------
B D               Armadillo  --------
B D                Elephant  --------
B D        White rhinoceros  ========
B D                Squirrel  --------
        Chinese tree shrew  --------
B D          Naked mole-rat  ========
B D                     Dog  --------
B D                     Cat  --------
            Pacific walrus  ========
B D                 Opossum  ========
B D         Tasmanian devil  ========
                  Aardvark  --------
B D                Bushbaby  ========

Alignment block 35 of 1060 in window, 3846338 - 3846338, 1 bps 
B D                   Human  t
B D                   Chimp  t
B D                 Gorilla  t
B D               Orangutan  t
B D                  Gibbon  t
B D                  Rhesus  t
B D     Crab-eating macaque  t
B D                  Baboon  t
B D            Green monkey  t
B D                Marmoset  t
B D         Squirrel monkey  t
B D                     Rat  t
B D                  Alpaca  t
             Bactrian camel  t
B D                 Dolphin  t
               Killer whale  t
B D                   Sheep  t
           Black flying-fox  t
B D                 Megabat  t
B D                 Manatee  t
           Cape golden mole  c
           Star-nosed mole  =
B D                    Pika  =
       Cape elephant shrew  =
B D                Hedgehog  =
B D                   Shrew  =
B D                   Mouse  =
              Prairie vole  -
B D         Chinese hamster  =
            Golden hamster  -
B D                  Rabbit  =
    Lesser Egyptian jerboa  =
B D                  Tenrec  =
          Brush-tailed rat  =
                Chinchilla  =
B D              Guinea pig  =
B D                     Pig  =
              Weddell seal  =
B D                   Panda  -
             Big brown bat  -
B D                     Cow  =
             Domestic goat  =
          Tibetan antelope  =
B D                Microbat  =
      David's myotis (bat)  -
B D               Armadillo  -
B D                Elephant  -
B D        White rhinoceros  =
B D                   Horse  -
B D                Squirrel  -
        Chinese tree shrew  -
B D          Naked mole-rat  =
B D                     Dog  -
B D                 Ferret   -
B D                     Cat  -
            Pacific walrus  =
B D                 Opossum  =
B D         Tasmanian devil  =
                  Aardvark  -
B D                Bushbaby  =

Inserts between block 35 and 36 in window
B D                  Sheep 1bp
          Black flying-fox 1bp
B D                Megabat 1bp
          Cape golden mole 2bp

Alignment block 36 of 1060 in window, 3846339 - 3846339, 1 bps 
B D                   Human  t
B D                   Chimp  t
B D                 Gorilla  t
B D               Orangutan  c
B D                  Gibbon  c
B D                  Rhesus  c
B D     Crab-eating macaque  c
B D                  Baboon  c
B D            Green monkey  c
B D                Marmoset  c
B D         Squirrel monkey  c
B D                     Rat  t
           Cape golden mole  c
           Star-nosed mole  =
B D                    Pika  =
       Cape elephant shrew  =
B D                Hedgehog  =
B D                   Shrew  =
B D                   Mouse  =
              Prairie vole  -
B D         Chinese hamster  =
            Golden hamster  -
B D                  Rabbit  =
          Black flying-fox  =
    Lesser Egyptian jerboa  =
B D                  Tenrec  =
          Brush-tailed rat  =
                Chinchilla  =
B D              Guinea pig  =
B D                     Pig  =
B D                 Dolphin  -
              Weddell seal  =
B D                 Megabat  =
              Killer whale  -
B D                   Panda  -
             Big brown bat  -
B D                     Cow  =
             Domestic goat  =
B D                   Sheep  =
          Tibetan antelope  =
B D                Microbat  =
      David's myotis (bat)  -
B D               Armadillo  -
B D                 Manatee  -
B D                Elephant  -
B D        White rhinoceros  =
B D                   Horse  -
            Bactrian camel  -
B D                  Alpaca  -
B D                Squirrel  -
        Chinese tree shrew  -
B D          Naked mole-rat  =
B D                     Dog  -
B D                 Ferret   -
B D                     Cat  -
            Pacific walrus  =
B D                 Opossum  =
B D         Tasmanian devil  =
                  Aardvark  -
B D                Bushbaby  =

Alignment block 37 of 1060 in window, 3846340 - 3846342, 3 bps 
B D                   Human  c-------------------------tt
B D                   Chimp  c-----------tttctttttttttttt
B D                 Gorilla  c------------------ttttctttt
B D               Orangutan  c---------------tttttttttttt
B D                  Gibbon  cttttttttttttttttttttttttttt
B D                  Rhesus  c-------------tttccttttttttt
B D     Crab-eating macaque  c------------------------ttt
B D                  Baboon  c-----------tttttttttttttttt
B D            Green monkey  c-------------tttttttttttttt
B D                Marmoset  t---------------------------
B D         Squirrel monkey  t---------------------------
B D                  Alpaca  -------------------------ccc
             Bactrian camel  -------------------------ccc
B D                 Dolphin  -------------------------ccc
               Killer whale  -------------------------ccc
B D                 Ferret   -------------------------tct
B D                   Panda  -------------------------tct
           Black flying-fox  -------------------------cct
B D                 Megabat  -------------------------cct
           Cape golden mole  -------------------------ctt
           Star-nosed mole  ============================
B D                    Pika  ============================
       Cape elephant shrew  ============================
B D                Hedgehog  ============================
B D                   Shrew  ============================
B D                   Mouse  ============================
              Prairie vole  ----------------------------
B D                     Rat  ----------------------------
B D         Chinese hamster  ============================
            Golden hamster  ----------------------------
B D                  Rabbit  ============================
    Lesser Egyptian jerboa  ============================
B D                  Tenrec  ============================
          Brush-tailed rat  ============================
                Chinchilla  ============================
B D              Guinea pig  ============================
B D                     Pig  ============================
              Weddell seal  ============================
             Big brown bat  ----------------------------
B D                     Cow  ============================
             Domestic goat  ============================
B D                   Sheep  ============================
          Tibetan antelope  ============================
B D                Microbat  ============================
      David's myotis (bat)  ----------------------------
B D               Armadillo  ----------------------------
B D                 Manatee  ----------------------------
B D                Elephant  ----------------------------
B D        White rhinoceros  ============================
B D                   Horse  ----------------------------
B D                Squirrel  ----------------------------
        Chinese tree shrew  ----------------------------
B D          Naked mole-rat  ============================
B D                     Dog  ----------------------------
B D                     Cat  ----------------------------
            Pacific walrus  ============================
B D                 Opossum  ============================
B D         Tasmanian devil  ============================
                  Aardvark  ----------------------------
B D                Bushbaby  ============================

Inserts between block 37 and 38 in window
B D                 Alpaca 1bp
            Bactrian camel 1bp
B D                Dolphin 1bp
              Killer whale 1bp
B D                Ferret  2bp
B D                  Panda 2bp
          Black flying-fox 38bp
B D                Megabat 108bp

Alignment block 38 of 1060 in window, 3846343 - 3846343, 1 bps 
B D                   Human  t
B D                   Chimp  t
B D                 Gorilla  t
B D               Orangutan  g
B D                  Gibbon  t
B D                  Rhesus  t
B D     Crab-eating macaque  t
B D                  Baboon  t
B D            Green monkey  t
B D                Marmoset  t
B D         Squirrel monkey  t
B D                  Alpaca  t
             Bactrian camel  t
B D                 Dolphin  t
               Killer whale  t
B D                 Ferret   t
B D                   Panda  t
           Cape golden mole  t
           Star-nosed mole  =
B D                    Pika  =
       Cape elephant shrew  =
B D                Hedgehog  =
B D                   Shrew  =
B D                   Mouse  =
              Prairie vole  -
B D                     Rat  -
B D         Chinese hamster  =
            Golden hamster  -
B D                  Rabbit  =
          Black flying-fox  =
    Lesser Egyptian jerboa  =
B D                  Tenrec  =
          Brush-tailed rat  =
                Chinchilla  =
B D              Guinea pig  =
B D                     Pig  =
              Weddell seal  =
B D                 Megabat  =
             Big brown bat  -
B D                     Cow  =
             Domestic goat  =
B D                   Sheep  =
          Tibetan antelope  =
B D                Microbat  =
      David's myotis (bat)  -
B D               Armadillo  -
B D                 Manatee  -
B D                Elephant  -
B D        White rhinoceros  =
B D                   Horse  -
B D                Squirrel  -
        Chinese tree shrew  -
B D          Naked mole-rat  =
B D                     Dog  -
B D                     Cat  -
            Pacific walrus  =
B D                 Opossum  =
B D         Tasmanian devil  =
                  Aardvark  -
B D                Bushbaby  =

Alignment block 39 of 1060 in window, 3846344 - 3846346, 3 bps 
B D                   Human  ttt
B D                   Chimp  ttt
B D                 Gorilla  ttt
B D               Orangutan  ttt
B D                  Gibbon  ttt
B D                  Rhesus  ttt
B D     Crab-eating macaque  ttt
B D                  Baboon  ttt
B D            Green monkey  ttt
B D                Marmoset  gtt
B D         Squirrel monkey  gtt
B D                  Alpaca  --t
             Bactrian camel  --t
B D                 Dolphin  --t
               Killer whale  --t
B D                 Ferret   -tc
           Cape golden mole  gct
           Star-nosed mole  ===
B D                    Pika  ===
       Cape elephant shrew  ===
B D                Hedgehog  ===
B D                   Shrew  ===
B D                   Mouse  ===
              Prairie vole  ---
B D                     Rat  ---
B D         Chinese hamster  ===
            Golden hamster  ---
B D                  Rabbit  ===
          Black flying-fox  ===
    Lesser Egyptian jerboa  ===
B D                  Tenrec  ===
          Brush-tailed rat  ===
                Chinchilla  ===
B D              Guinea pig  ===
B D                     Pig  ===
              Weddell seal  ===
B D                 Megabat  ===
B D                   Panda  ---
             Big brown bat  ---
B D                     Cow  ===
             Domestic goat  ===
B D                   Sheep  ===
          Tibetan antelope  ===
B D                Microbat  ===
      David's myotis (bat)  ---
B D               Armadillo  ---
B D                 Manatee  ---
B D                Elephant  ---
B D        White rhinoceros  ===
B D                   Horse  ---
B D                Squirrel  ---
        Chinese tree shrew  ---
B D          Naked mole-rat  ===
B D                     Dog  ---
B D                     Cat  ---
            Pacific walrus  ===
B D                 Opossum  ===
B D         Tasmanian devil  ===
                  Aardvark  ---
B D                Bushbaby  ===

Inserts between block 39 and 40 in window
B D                 Alpaca 2bp
            Bactrian camel 2bp
B D                Dolphin 2bp
              Killer whale 2bp
B D                Ferret  1bp

Alignment block 40 of 1060 in window, 3846347 - 3846347, 1 bps 
B D                   Human  t
B D                   Chimp  t
B D                 Gorilla  t
B D               Orangutan  t
B D                  Gibbon  t
B D                  Rhesus  t
B D     Crab-eating macaque  t
B D                  Baboon  t
B D            Green monkey  t
B D                Marmoset  t
B D         Squirrel monkey  t
B D                  Alpaca  t
             Bactrian camel  t
B D                 Ferret   t
           Cape golden mole  c
           Star-nosed mole  =
B D                    Pika  =
       Cape elephant shrew  =
B D                Hedgehog  =
B D                   Shrew  =
B D                   Mouse  =
              Prairie vole  -
B D                     Rat  -
B D         Chinese hamster  =
            Golden hamster  -
B D                  Rabbit  =
          Black flying-fox  =
    Lesser Egyptian jerboa  =
B D                  Tenrec  =
          Brush-tailed rat  =
                Chinchilla  =
B D              Guinea pig  =
B D                     Pig  =
B D                 Dolphin  =
              Weddell seal  =
B D                 Megabat  =
              Killer whale  =
B D                   Panda  -
             Big brown bat  -
B D                     Cow  =
             Domestic goat  =
B D                   Sheep  =
          Tibetan antelope  =
B D                Microbat  =
      David's myotis (bat)  -
B D               Armadillo  -
B D                 Manatee  -
B D                Elephant  -
B D        White rhinoceros  =
B D                   Horse  -
B D                Squirrel  -
        Chinese tree shrew  -
B D          Naked mole-rat  =
B D                     Dog  -
B D                     Cat  -
            Pacific walrus  =
B D                 Opossum  =
B D         Tasmanian devil  =
                  Aardvark  -
B D                Bushbaby  =

Alignment block 41 of 1060 in window, 3846348 - 3846351, 4 bps 
B D                   Human  tttt
B D                   Chimp  tttt
B D                 Gorilla  tttt
B D               Orangutan  tttt
B D                  Gibbon  tttt
B D                  Rhesus  tttt
B D     Crab-eating macaque  tttt
B D                  Baboon  tttt
B D            Green monkey  tttt
B D                Marmoset  tttt
B D         Squirrel monkey  tttt
B D                 Ferret   tgtt
           Cape golden mole  ttcc
           Star-nosed mole  ====
B D                    Pika  ====
       Cape elephant shrew  ====
B D                Hedgehog  ====
B D                   Shrew  ====
B D                   Mouse  ====
              Prairie vole  ----
B D                     Rat  ----
B D         Chinese hamster  ====
            Golden hamster  ----
B D                  Rabbit  ====
          Black flying-fox  ====
    Lesser Egyptian jerboa  ====
B D                  Tenrec  ====
          Brush-tailed rat  ====
                Chinchilla  ====
B D              Guinea pig  ====
B D                     Pig  ====
B D                 Dolphin  ====
              Weddell seal  ====
B D                 Megabat  ====
              Killer whale  ====
B D                   Panda  ----
             Big brown bat  ----
B D                     Cow  ====
             Domestic goat  ====
B D                   Sheep  ====
          Tibetan antelope  ====
B D                Microbat  ====
      David's myotis (bat)  ----
B D               Armadillo  ----
B D                 Manatee  ----
B D                Elephant  ----
B D        White rhinoceros  ====
B D                   Horse  ----
            Bactrian camel  ----
B D                  Alpaca  ----
B D                Squirrel  ----
        Chinese tree shrew  ----
B D          Naked mole-rat  ====
B D                     Dog  ----
B D                     Cat  ----
            Pacific walrus  ====
B D                 Opossum  ====
B D         Tasmanian devil  ====
                  Aardvark  ----
B D                Bushbaby  ====

Inserts between block 41 and 42 in window
B D                Ferret  5bp

Alignment block 42 of 1060 in window, 3846352 - 3846368, 17 bps 
B D                   Human  tgagacagagtcaccca
B D                   Chimp  tgagacagagtcaccca
B D                 Gorilla  tgagacagagtcaccca
B D               Orangutan  tgagacagagtcaccca
B D                  Gibbon  tgaaaaaaaatcccccc
B D                  Rhesus  tgagacagagtca-cca
B D     Crab-eating macaque  tgagacagagtca-cca
B D                  Baboon  tgagacagagtca-cca
B D            Green monkey  tgagacagagtca-cca
B D                Marmoset  tgagacagagtcgccca
B D         Squirrel monkey  tgagacagagttgccca
           Cape golden mole  ccagagaaaagcacaca
           Star-nosed mole  =================
B D                    Pika  =================
       Cape elephant shrew  =================
B D                Hedgehog  =================
B D                   Shrew  =================
B D                   Mouse  =================
              Prairie vole  -----------------
B D                     Rat  -----------------
B D         Chinese hamster  =================
            Golden hamster  -----------------
B D                  Rabbit  =================
          Black flying-fox  =================
    Lesser Egyptian jerboa  =================
B D                  Tenrec  =================
          Brush-tailed rat  =================
                Chinchilla  =================
B D              Guinea pig  =================
B D                     Pig  =================
B D                 Dolphin  =================
              Weddell seal  =================
B D                 Megabat  =================
              Killer whale  =================
B D                   Panda  -----------------
             Big brown bat  -----------------
B D                     Cow  =================
             Domestic goat  =================
B D                   Sheep  =================
          Tibetan antelope  =================
B D                Microbat  =================
      David's myotis (bat)  -----------------
B D               Armadillo  -----------------
B D                 Manatee  -----------------
B D                Elephant  -----------------
B D        White rhinoceros  =================
B D                   Horse  -----------------
            Bactrian camel  -----------------
B D                  Alpaca  -----------------
B D                Squirrel  -----------------
        Chinese tree shrew  -----------------
B D          Naked mole-rat  =================
B D                     Dog  -----------------
B D                 Ferret   =================
B D                     Cat  -----------------
            Pacific walrus  =================
B D                 Opossum  =================
B D         Tasmanian devil  =================
                  Aardvark  -----------------
B D                Bushbaby  =================

Inserts between block 42 and 43 in window
          Cape golden mole 1bp

Alignment block 43 of 1060 in window, 3846369 - 3846651, 283 bps 
B D                   Human  ggctggagtgctgtggcacgatctctgctcactgcaacctctgcctcctagattcaagcaattctcctgc
B D                   Chimp  ggctggagtgctgtggcacgatctctgctcactgcaacctccgcctcctggattcaagcaattctcctgc
B D                 Gorilla  ggctggagtgctgtggcacgatctctgctcactgcaacctccgcctcctggattcaagcaattctcctgc
B D               Orangutan  ggctggagtgcagtggcacgatctctgctcactgcaacctctgcctcctgggttcaagcaattctcctgc
B D                  Gibbon  ggctggagtgcaggggcacgatctctgctcactgcaacctccgcctcctgggttcaaacaattctcctgc
B D                  Rhesus  ggctggagtgcagtggcacgatctctgctcactgcaacctccgcctcctgggttgaagaaattcccctgc
B D     Crab-eating macaque  ggctggagtgcagtggcatgatctctgctcactgcaacctccgcctcctgggttgaagcaattcccctgc
B D                  Baboon  ggctggagtgcagtggcacgatctctgctcactgcaacctccgcctcctgggttgaagcaattcccctgc
B D            Green monkey  ggctggagtgcagtggcaccatctctgctcactgcaacctccgcctcctgggttcaagcaattcccctgc
B D                Marmoset  ggctggagtccagtggcacgatcttggctcaccacaaccttcacctcctgg-ttcaagcaattctcctgc
B D         Squirrel monkey  ggctggagtgcagtggcaccatcttggctcactacaacctccacctcctgg-ttcaagcaattctcctgc
           Star-nosed mole  ======================================================================
B D                    Pika  ======================================================================
       Cape elephant shrew  ======================================================================
B D                Hedgehog  ======================================================================
B D                   Shrew  ======================================================================
B D                   Mouse  ======================================================================
              Prairie vole  ----------------------------------------------------------------------
B D                     Rat  ----------------------------------------------------------------------
B D         Chinese hamster  ======================================================================
            Golden hamster  ----------------------------------------------------------------------
B D                  Rabbit  ======================================================================
          Black flying-fox  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
B D                  Tenrec  ======================================================================
          Brush-tailed rat  ======================================================================
                Chinchilla  ======================================================================
B D              Guinea pig  ======================================================================
B D                     Pig  ======================================================================
B D                 Dolphin  ======================================================================
              Weddell seal  ======================================================================
B D                 Megabat  ======================================================================
              Killer whale  ======================================================================
B D                   Panda  ----------------------------------------------------------------------
             Big brown bat  ----------------------------------------------------------------------
B D                     Cow  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
B D                Microbat  ======================================================================
      David's myotis (bat)  ----------------------------------------------------------------------
B D               Armadillo  ----------------------------------------------------------------------
B D                 Manatee  ----------------------------------------------------------------------
B D                Elephant  ----------------------------------------------------------------------
B D        White rhinoceros  ======================================================================
B D                   Horse  ----------------------------------------------------------------------
            Bactrian camel  ----------------------------------------------------------------------
B D                  Alpaca  ----------------------------------------------------------------------
B D                Squirrel  ----------------------------------------------------------------------
        Chinese tree shrew  ----------------------------------------------------------------------
B D          Naked mole-rat  ======================================================================
B D                     Dog  ----------------------------------------------------------------------
B D                 Ferret   ======================================================================
B D                     Cat  ----------------------------------------------------------------------
            Pacific walrus  ======================================================================
B D                 Opossum  ======================================================================
B D         Tasmanian devil  ======================================================================
          Cape golden mole  ======================================================================
                  Aardvark  ----------------------------------------------------------------------
B D                Bushbaby  ======================================================================

                      Human  ctcagcctcctgattagctggaattacaggcatgcaccaccacgcccagctaactttttctatttttagt
                      Chimp  ctcagcctcctgattagctggaattacaggcattcaccaccacgcccagctaactttttctatttttagt
                    Gorilla  ctcagcctcctgagtagctggaattacaggcatgcaccaccacgcccagctaactttttctatttttagt
                  Orangutan  ctcagcctcctgagtagctggaattacaggcatgcaccaccacgcccagctaactttttctatttttagt
                     Gibbon  ctcaccctcctgaatagctggaattacaggcatgcaccaccacgcccagctaactctttctatttttagt
                     Rhesus  ctcagcctcctgagtagctggaattacaggcatacaccaccatggccagctaactttttctatttttagt
        Crab-eating macaque  ctcagcctcctgagtagctggaattacaggcatacaccaccatggccagctaactttttctatttttagt
                     Baboon  ctcagcctcctgagtagctggaattacaggcatacaccaccatggccagctaactttttctatttttagt
               Green monkey  ctcagcctcctgagtagctggaattacaggcatacaccaccatggccagctaactttttctatttttagt
                   Marmoset  ctcagcctcttgagtagctggaattacaggcatgcaccaccatgcccagctcattttttgtacttttagt
            Squirrel monkey  ctcagcctcctgagtagctggaattacaggcatgcaccaccatgcccagctaattttttgtacttttagt
            Star-nosed mole  ======================================================================
                       Pika  ======================================================================
        Cape elephant shrew  ======================================================================
                   Hedgehog  ======================================================================
                      Shrew  ======================================================================
                      Mouse  ======================================================================
               Prairie vole  ----------------------------------------------------------------------
                        Rat  ----------------------------------------------------------------------
            Chinese hamster  ======================================================================
             Golden hamster  ----------------------------------------------------------------------
                     Rabbit  ======================================================================
           Black flying-fox  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
                     Tenrec  ======================================================================
           Brush-tailed rat  ======================================================================
                 Chinchilla  ======================================================================
                 Guinea pig  ======================================================================
                        Pig  ======================================================================
                    Dolphin  ======================================================================
               Weddell seal  ======================================================================
                    Megabat  ======================================================================
               Killer whale  ======================================================================
                      Panda  ----------------------------------------------------------------------
              Big brown bat  ----------------------------------------------------------------------
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                   Microbat  ======================================================================
       David's myotis (bat)  ----------------------------------------------------------------------
                  Armadillo  ----------------------------------------------------------------------
                    Manatee  ----------------------------------------------------------------------
                   Elephant  ----------------------------------------------------------------------
           White rhinoceros  ======================================================================
                      Horse  ----------------------------------------------------------------------
             Bactrian camel  ----------------------------------------------------------------------
                     Alpaca  ----------------------------------------------------------------------
                   Squirrel  ----------------------------------------------------------------------
         Chinese tree shrew  ----------------------------------------------------------------------
             Naked mole-rat  ======================================================================
                        Dog  ----------------------------------------------------------------------
                    Ferret   ======================================================================
                        Cat  ----------------------------------------------------------------------
             Pacific walrus  ======================================================================
                    Opossum  ======================================================================
            Tasmanian devil  ======================================================================
           Cape golden mole  ======================================================================
                   Aardvark  ----------------------------------------------------------------------
                   Bushbaby  ======================================================================

                      Human  agagacagggtttcaccatgttggc-caggctggtctcgaactcccgacctcaggtgatccgcccacctg
                      Chimp  agagacagggtttcaccatgttggc-caggctggactcgaactcccgacctcaggtgatccgcccacctg
                    Gorilla  agagacagggtttcaccatgttggc-caggctggtcttgaactcccgacctcaggtgatccgcccacctg
                  Orangutan  agagacagggtttcaccatgttggc-caggctgg--tcgaactcctgacctcaagtgatccgcccacctc
                     Gibbon  agagacaggatttcaccatgttggc-caggctggtctcgaactcccgacctcaggtgatctgcccacctg
                     Rhesus  agagatggggtttcaccatgttggc-caggccagtttcgaactcctgacctcaggtgatctgcccacctc
        Crab-eating macaque  agagatggggtttcaccatgttggc-caggccagtttcgaactcctgacctcaggtgatctgcccacctc
                     Baboon  agagatggggtttcaccatgttggc-caggccagtttcgaactcctgacctcaggtgatctgcccacctc
               Green monkey  agagatggggtttcaccattttggc-caggccagtttcgaactcctgacctcaggtgatccgcccacctt
                   Marmoset  agagacaggatttcactatgttggcccaggctggtctcaaactcatgacctcaggtaatctgcccacctg
            Squirrel monkey  agagacaggatttcaccatgttggctcaggctggtctcaaactcctgacctcaggtaatccacccacctg
            Star-nosed mole  ======================================================================
                       Pika  ======================================================================
        Cape elephant shrew  ======================================================================
                   Hedgehog  ======================================================================
                      Shrew  ======================================================================
                      Mouse  ======================================================================
               Prairie vole  ----------------------------------------------------------------------
                        Rat  ----------------------------------------------------------------------
            Chinese hamster  ======================================================================
             Golden hamster  ----------------------------------------------------------------------
                     Rabbit  ======================================================================
           Black flying-fox  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
                     Tenrec  ======================================================================
           Brush-tailed rat  ======================================================================
                 Chinchilla  ======================================================================
                 Guinea pig  ======================================================================
                        Pig  ======================================================================
                    Dolphin  ======================================================================
               Weddell seal  ======================================================================
                    Megabat  ======================================================================
               Killer whale  ======================================================================
                      Panda  ----------------------------------------------------------------------
              Big brown bat  ----------------------------------------------------------------------
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                   Microbat  ======================================================================
       David's myotis (bat)  ----------------------------------------------------------------------
                  Armadillo  ----------------------------------------------------------------------
                    Manatee  ----------------------------------------------------------------------
                   Elephant  ----------------------------------------------------------------------
           White rhinoceros  ======================================================================
                      Horse  ----------------------------------------------------------------------
             Bactrian camel  ----------------------------------------------------------------------
                     Alpaca  ----------------------------------------------------------------------
                   Squirrel  ----------------------------------------------------------------------
         Chinese tree shrew  ----------------------------------------------------------------------
             Naked mole-rat  ======================================================================
                        Dog  ----------------------------------------------------------------------
                    Ferret   ======================================================================
                        Cat  ----------------------------------------------------------------------
             Pacific walrus  ======================================================================
                    Opossum  ======================================================================
            Tasmanian devil  ======================================================================
           Cape golden mole  ======================================================================
                   Aardvark  ----------------------------------------------------------------------
                   Bushbaby  ======================================================================

                      Human  ggcctcccaaagtgctgggattacaggcgtgagccaccgtgcgtggcctt----------tattttattt
                      Chimp  ggcctcccaaagtgctgggattacaggcgtgagccaccgtgcgtggcctt----------tattttattt
                    Gorilla  ggcctcccaaagtgctgggattacaggcgtgagccaccgtgcgtggcctt----------tattttattt
                  Orangutan  ggcctcccaaagtgctgggattacaggtgtgagccaccatgcgtggcctt----------tattttattt
                     Gibbon  ggcctcccaaagtgctgggattacaggcatgagccaccgtgcatggcctt----------tattttattt
                     Rhesus  gggctcccaaagtgctgggattacaggcgtgagccacggtgcgtggcctt----------tattttattt
        Crab-eating macaque  ggcctcccaaagtgctgggattacaggcgtgagccacagtgcgtggcctt----------tattttattt
                     Baboon  ggcctcccaaagtgctgggattacaggcgtgagccatggtgcgtggcctt----------tattttattt
               Green monkey  ggcctcccaaagtgctgggattacaggcgtgagccacggtgcgtggcctt----------tattttattt
                   Marmoset  ggcctcccaaagtgctgggattacaggcatgagccaccacatttggcc------------tttttttttt
            Squirrel monkey  ggcctcccaaagtgctgggattacaggcatgagctaccacatgtggccttatttatttatttatttattt
            Star-nosed mole  ======================================================================
                       Pika  ======================================================================
        Cape elephant shrew  ======================================================================
                   Hedgehog  ======================================================================
                      Shrew  ======================================================================
                      Mouse  ======================================================================
               Prairie vole  ----------------------------------------------------------------------
                        Rat  ----------------------------------------------------------------------
            Chinese hamster  ======================================================================
             Golden hamster  ----------------------------------------------------------------------
                     Rabbit  ======================================================================
           Black flying-fox  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
                     Tenrec  ======================================================================
           Brush-tailed rat  ======================================================================
                 Chinchilla  ======================================================================
                 Guinea pig  ======================================================================
                        Pig  ======================================================================
                    Dolphin  ======================================================================
               Weddell seal  ======================================================================
                    Megabat  ======================================================================
               Killer whale  ======================================================================
                      Panda  ----------------------------------------------------------------------
              Big brown bat  ----------------------------------------------------------------------
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                   Microbat  ======================================================================
       David's myotis (bat)  ----------------------------------------------------------------------
                  Armadillo  ----------------------------------------------------------------------
                    Manatee  ----------------------------------------------------------------------
                   Elephant  ----------------------------------------------------------------------
           White rhinoceros  ======================================================================
                      Horse  ----------------------------------------------------------------------
             Bactrian camel  ----------------------------------------------------------------------
                     Alpaca  ----------------------------------------------------------------------
                   Squirrel  ----------------------------------------------------------------------
         Chinese tree shrew  ----------------------------------------------------------------------
             Naked mole-rat  ======================================================================
                        Dog  ----------------------------------------------------------------------
                    Ferret   ======================================================================
                        Cat  ----------------------------------------------------------------------
             Pacific walrus  ======================================================================
                    Opossum  ======================================================================
            Tasmanian devil  ======================================================================
           Cape golden mole  ======================================================================
                   Aardvark  ----------------------------------------------------------------------
                   Bushbaby  ======================================================================

                      Human  tttattttttgaga
                      Chimp  tttattttttgaga
                    Gorilla  tttattttttgaga
                  Orangutan  tttattttttgaga
                     Gibbon  tttattttttgaga
                     Rhesus  tttattttttgaga
        Crab-eating macaque  tttattttttgaga
                     Baboon  tttattttttgaga
               Green monkey  tttattttttgaga
                   Marmoset  ttttttttttgaga
            Squirrel monkey  atttatttttgaga
            Star-nosed mole  ==============
                       Pika  ==============
        Cape elephant shrew  ==============
                   Hedgehog  ==============
                      Shrew  ==============
                      Mouse  ==============
               Prairie vole  --------------
                        Rat  --------------
            Chinese hamster  ==============
             Golden hamster  --------------
                     Rabbit  ==============
           Black flying-fox  ==============
     Lesser Egyptian jerboa  ==============
                     Tenrec  ==============
           Brush-tailed rat  ==============
                 Chinchilla  ==============
                 Guinea pig  ==============
                        Pig  ==============
                    Dolphin  ==============
               Weddell seal  ==============
                    Megabat  ==============
               Killer whale  ==============
                      Panda  --------------
              Big brown bat  --------------
                        Cow  ==============
              Domestic goat  ==============
                      Sheep  ==============
           Tibetan antelope  ==============
                   Microbat  ==============
       David's myotis (bat)  --------------
                  Armadillo  --------------
                    Manatee  --------------
                   Elephant  --------------
           White rhinoceros  ==============
                      Horse  --------------
             Bactrian camel  --------------
                     Alpaca  --------------
                   Squirrel  --------------
         Chinese tree shrew  --------------
             Naked mole-rat  ==============
                        Dog  --------------
                    Ferret   ==============
                        Cat  --------------
             Pacific walrus  ==============
                    Opossum  ==============
            Tasmanian devil  ==============
           Cape golden mole  ==============
                   Aardvark  --------------
                   Bushbaby  ==============

Inserts between block 43 and 44 in window
B D        Squirrel monkey 303bp

Alignment block 44 of 1060 in window, 3846652 - 3846661, 10 bps 
B D                   Human  tggaattttg
B D                   Chimp  tggaattttg
B D                 Gorilla  tgggattttg
B D               Orangutan  tggagttttg
B D                  Gibbon  tggagttttg
B D                  Rhesus  tggagttttg
B D     Crab-eating macaque  tggagttttg
B D                  Baboon  tggagttttg
B D            Green monkey  tggagttttg
B D                Marmoset  cggagttttg
B D         Squirrel monkey  tggagttttg
           Star-nosed mole  ==========
B D                    Pika  ==========
       Cape elephant shrew  ==========
B D                Hedgehog  ==========
B D                   Shrew  ==========
B D                   Mouse  ==========
              Prairie vole  ----------
B D                     Rat  ----------
B D         Chinese hamster  ==========
            Golden hamster  ----------
B D                  Rabbit  ==========
          Black flying-fox  ==========
    Lesser Egyptian jerboa  ==========
B D                  Tenrec  ==========
          Brush-tailed rat  ==========
                Chinchilla  ==========
B D              Guinea pig  ==========
B D                     Pig  ==========
B D                 Dolphin  ==========
              Weddell seal  ==========
B D                 Megabat  ==========
              Killer whale  ==========
B D                   Panda  ----------
             Big brown bat  ----------
B D                     Cow  ==========
             Domestic goat  ==========
B D                   Sheep  ==========
          Tibetan antelope  ==========
B D                Microbat  ==========
      David's myotis (bat)  ----------
B D               Armadillo  ----------
B D                 Manatee  ----------
B D                Elephant  ----------
B D        White rhinoceros  ==========
B D                   Horse  ----------
            Bactrian camel  ----------
B D                  Alpaca  ----------
B D                Squirrel  ----------
        Chinese tree shrew  ----------
B D          Naked mole-rat  ==========
B D                     Dog  ----------
B D                 Ferret   ==========
B D                     Cat  ----------
            Pacific walrus  ==========
B D                 Opossum  ==========
B D         Tasmanian devil  ==========
          Cape golden mole  ==========
                  Aardvark  ----------
B D                Bushbaby  ==========

Inserts between block 44 and 45 in window
B D               Marmoset 302bp

Alignment block 45 of 1060 in window, 3846662 - 3846669, 8 bps 
B D                   Human  gcctgtag
B D                   Chimp  gcctgtag
B D                 Gorilla  gcctgtag
B D               Orangutan  gcctgtag
B D                  Gibbon  gcctgtag
B D                  Rhesus  gcctgtag
B D     Crab-eating macaque  gcctgtag
B D                  Baboon  gcctgtag
B D            Green monkey  gcctgtag
B D         Squirrel monkey  ccctatca
           Star-nosed mole  ========
B D                    Pika  ========
       Cape elephant shrew  ========
B D                Hedgehog  ========
B D                   Shrew  ========
B D                   Mouse  ========
              Prairie vole  --------
B D                     Rat  --------
B D         Chinese hamster  ========
            Golden hamster  --------
B D                  Rabbit  ========
          Black flying-fox  ========
    Lesser Egyptian jerboa  ========
B D                  Tenrec  ========
          Brush-tailed rat  ========
                Chinchilla  ========
B D              Guinea pig  ========
B D                     Pig  ========
B D                 Dolphin  ========
              Weddell seal  ========
B D                 Megabat  ========
              Killer whale  ========
B D                Marmoset  ========
B D                   Panda  --------
             Big brown bat  --------
B D                     Cow  ========
             Domestic goat  ========
B D                   Sheep  ========
          Tibetan antelope  ========
B D                Microbat  ========
      David's myotis (bat)  --------
B D               Armadillo  --------
B D                 Manatee  --------
B D                Elephant  --------
B D        White rhinoceros  ========
B D                   Horse  --------
            Bactrian camel  --------
B D                  Alpaca  --------
B D                Squirrel  --------
        Chinese tree shrew  --------
B D          Naked mole-rat  ========
B D                     Dog  --------
B D                 Ferret   ========
B D                     Cat  --------
            Pacific walrus  ========
B D                 Opossum  ========
B D         Tasmanian devil  ========
          Cape golden mole  ========
                  Aardvark  --------
B D                Bushbaby  ========

Alignment block 46 of 1060 in window, 3846670 - 3846795, 126 bps 
B D                   Human  cccaggttg----gagtgcaatggcacgatctcagctcactgcagcctccacctccc-gggttccaacga
B D                   Chimp  cccaggttg----gagtgcaatggcatgatctcagctcactgcagcctccacctccc-aggttccaatga
B D                 Gorilla  cccaggttg----gagtgcaatggcacgatctcagctcactgcagcctccacctccc-gggttccaacga
B D               Orangutan  cccaggttg----gagtgcaatggcacaatctcagctcactgcagcctccacctccc-gggttccaacga
B D                  Gibbon  cccaggttg----gagtgcagtggcacgatctcagctcactgcagcctccacctccc-gggttccaacga
B D                  Rhesus  cccaggttggagtgagtgcaatggcacgatctcagctcactgcaggctccgcctcct-gggtcccaatga
B D     Crab-eating macaque  cccaggttggagtgagtgcaatggcacgatctcagctcactgcaggctccgcctcct-gggttccaatga
B D                  Baboon  cccaggttggagtgagtgcaatggcacgatctcagctcactgcaggctccgcctcctggggttccaatga
B D            Green monkey  cccaggttggagtgagtgcaatggcacgatctcagctcactgcaggctccgcctcct-gggttccaacaa
B D                Marmoset  ccctggttg----gagtgcaatggcacgctcttagctcactgcagcctccatctgtt-gggttccaagga
B D         Squirrel monkey  cccaggttg----gagtgcaatggcacattctcagctcactgcagcctccgtctcct-gggttccaacaa
           Star-nosed mole  ======================================================================
B D                    Pika  ======================================================================
       Cape elephant shrew  ======================================================================
B D                Hedgehog  ======================================================================
B D