Multiz Alignments of 100 Vertebrates
 

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Alignment block 1 of 357 in window, 41839835 - 41839887, 53 bps 
B D                     Human  g--t--acaag-ttgctgtg--tgga-catatatgttca-tttctcttggg-tagatc------------
B D                     Chimp  t--t--acaag-ttgctgtg--tgga-catatatgttca-tttctcttggg-tagatc------------
B D                   Gorilla  g--t--acaag-ttgctgtg--tgga-catatatgttca-tttctcttggg-tagatc------------
B D                 Orangutan  g--t--acaag-ttgctgtg--tgga-catatatgttca-tttctcttggg-tagatc------------
B D                    Gibbon  g--t--acaag-ttgctgtg--tgga-catatatgttca-tttctcttgag-tagatc------------
B D                    Rhesus  g--t--acagg-tttctgtg--tgga-catatatgttca-tttatcttggg-tagatc------------
B D       Crab-eating macaque  g--t--acagg-tttctgtg--tgga-catatatgttca-tttatcttggg-tagatc------------
B D                    Baboon  g--t--acaag-tttctgtg--tgga-catatatgttca-tttatcttggg-tagatc------------
B D              Green monkey  g--t--acaag-tttctgtg--tgga-catatatgttca-tttatcttggg-tagatc------------
B D           Squirrel monkey  g--g--tcaag-tttctgtg--tgga-cacgtatgttca-tttctcttgga-taggtc------------
B D                  Bushbaby  g--t--tcaag-tttctgtgtctgga-catatgtatttg-tttctcttg-g-tagatc------------
           Chinese tree shrew  g--t--acaag-ttt-tatg--ctga-catc-------------------a-taaatc------------
B D                  Squirrel  gtat--acaag-ttttcata--tgaa-cataaatgttca-tttctcttagg-tagat-------------
               Golden hamster  g---------g-ttttc-tg--tgga-catgtgtgttca-tttctgtggcg-tagatt------------
B D                     Mouse  g---------g-ttttc-tg--tgga-catgcatggtcg-tttttctcagg-tagatc------------
B D                Guinea pig  g--c--acaag-tttttgtg--caca-tgtgtatgttca-tttctcttggg-tagac-------------
                   Chinchilla  g--c--acaag-tttttgtg--caga-cataggtgttca-tttct-----------c-------------
B D                    Rabbit  --gt--acaag-tttgtgtg--tggaggaagcatgttca-tttctcttggg-gggatc------------
B D                    Alpaca  g--t--acaga-tttttcta--tgga-tatgtgttttct-ttactctttgg-tagatc------------
               Bactrian camel  g--t--acaga-tttttcta--tgga-catgtgttttct-ttactctttgg-tagatc------------
B D                   Dolphin  g--t--acagg-tttttctg--tgga-catatgttttct-tttctcttggg-tagatc------------
                 Killer whale  g--t--acagg-tttttctg--tgga-catatgttttct-tttctcttggg-tagatc------------
             Tibetan antelope  g--t--acaga-tttttctg--tggg-c--atgctttct-tttctcttggg-tagatc------------
B D                       Cow  g--t--acaga-tttttctg--tggg-c--atgttttct-tttctctcggg-tagatc------------
B D                     Sheep  g--t--acaga--ttttctg--tggg-c--atgctttct-tttctcttggg-tagatt------------
                Domestic goat  g--t--acaga--ttttctg--tggg-c--atgctttct-tttctcttggg-tagatc------------
B D                     Horse  g--t--acaag-tttttgtg--taga-catatgttttca-tgtctctt-gg-tagatc------------
B D          White rhinoceros  g--t--acaga-tttttgtg--tgga-catatgttttca-tttctcttggg-tagatc------------
B D                       Cat  g--g--gcagg-agtttgtc--tgga-catagccttttg-tttctcgtgtg-tagatc------------
B D                   Ferret   g--t--gcaag-ttttagtt--tggg-tggaggttttaa-ttt---------------------------
B D                     Panda  g--t--ataag-cttttgct--tggg-cggaggttttca-tttctcctggg-tagatcgtctacgtttgt
               Pacific walrus  g--t--acaag-cttttgtt--tggg-tggaggttttca-tttctcttga--------------------
                 Weddell seal  g--t--acaag-cttttgtt--tggg-tggaggttttca-tttctctggg--------------------
             Black flying-fox  g--t--gcaag-tttttgtg--taaa-cat--gttttca-tttctcttggg-tagatc------------
B D                   Megabat  g--t--acaag-tttttgtg--taga-cat--gttttca-tttctcttggg-tagatc------------
                Big brown bat  g--t--acatg-tttttgtg--taga-cat--gttttga-ttactcttgcg-tagatc------------
         David's myotis (bat)  g--t--acatg-tttttgtg--taga-tgt--gttttca-tttctcttggg-tagatc------------
B D                  Microbat  g--t--acata-tttttggg--taga-tgt--gttttca-tttctcttggg-tagatc------------
B D                  Hedgehog  c--t--atagg-tttttgtg--tgga-ctt--gttttca-tttctcttatg-taaacc------------
B D                     Shrew  g--t--tcaagttttttgtg--ggga-cat--attttca-tttctcttggg-taaata------------
B D                  Elephant  t--t--acaag-tttttgtg--tgga-catacattttta-tttctcttgag-tagatc------------
          Cape elephant shrew  t--t--ataaa-tttctgtg--taga-cat--gtttttc-ttccttgtg---------------------
B D                   Manatee  g--t--acaag-tttttgtg--tgga-catatgtttttg-tttctcttgag-tagatc------------
             Cape golden mole  g--gatataag-ctttggtg--tgga-catg-----gtattttctcttgag-taggtc------------
B D                    Tenrec  g--g--acaag-ttcttatg--tgga-cctgtgtttgta-tttctcttgagttagagc------------
                     Aardvark  g--t--gcaag-tttttgtg--tgga-cacgtgttttca-tttgttttgag-tatgtc------------
B D                 Armadillo  g--t--actgg-tctctgtg--tgaa-catgtgttttca-tttctctgggggtagatc------------
B D                      Pika  ----------------------------------------------------------------------
             Star-nosed mole  ----------------------------------------------------------------------
B D                       Rat  ======================================================================
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
            Brush-tailed rat  ----------------------------------------------------------------------
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
  D             Scarlet macaw  ======================================================================
  D              Mallard duck  ======================================================================
B D       Medium ground finch  ======================================================================
B D                Budgerigar  ======================================================================
  D           Green seaturtle  ======================================================================
  D       Collared flycatcher  ======================================================================
  D    Spiny softshell turtle  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                    Turkey  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                   Wallaby  ======================================================================
B D            Naked mole-rat  ======================================================================
         Princess of Burundi  ======================================================================
          Tibetan ground jay  ======================================================================
B D              Nile tilapia  ======================================================================
B D                 Tetraodon  ======================================================================
  D            Painted turtle  ======================================================================
B D                   Chicken  ======================================================================
B D        American alligator  ======================================================================
          Southern platyfish  ======================================================================
B D                Coelacanth  ======================================================================
B D               Stickleback  ======================================================================
  D    White-throated sparrow  ======================================================================
  D          Peregrine falcon  ======================================================================
B D               Zebra finch  ======================================================================
  D              Saker falcon  ======================================================================
B D                    Lizard  ======================================================================
  D               Rock pigeon  ======================================================================
B D                    Medaka  ======================================================================
B D             X. tropicalis  ======================================================================
B D                   Opossum  ======================================================================
B D                  Marmoset  ======================================================================
B D                       Dog  ======================================================================

                        Human  -------tt---cta
                        Chimp  -------tt---cta
                      Gorilla  -------tt---cta
                    Orangutan  -------tt---cta
                       Gibbon  -------tt---tta
                       Rhesus  -------tt---cta
          Crab-eating macaque  -------tt---cta
                       Baboon  -------tt---cta
                 Green monkey  -------gt---cta
              Squirrel monkey  -------tt---cta
                     Bushbaby  -------ta---cat
           Chinese tree shrew  -------t------a
                     Squirrel  ------------cta
               Golden hamster  -------at---ctg
                        Mouse  -------ac---ctg
                   Guinea pig  ------------cta
                   Chinchilla  ------------cta
                       Rabbit  -------tt---cca
                       Alpaca  -------ct---cta
               Bactrian camel  -------ct---cta
                      Dolphin  -------ct---cta
                 Killer whale  -------ct---cta
             Tibetan antelope  -------ct---cta
                          Cow  -------ct---ctc
                        Sheep  -------ct---cta
                Domestic goat  -------ct---cta
                        Horse  -------ct---cta
             White rhinoceros  -------cc---cta
                          Cat  -------ct---cta
                      Ferret   ---------------
                        Panda  tgttgctgt---ttg
               Pacific walrus  -------gt---ttg
                 Weddell seal  -------gt---ttg
             Black flying-fox  -------ct---c--
                      Megabat  -------ct---cta
                Big brown bat  -------ct---cta
         David's myotis (bat)  -------ct---cta
                     Microbat  -------ct---cta
                     Hedgehog  ---------------
                        Shrew  ---------------
                     Elephant  -------ct---cca
          Cape elephant shrew  ---------------
                      Manatee  -------ct---cta
             Cape golden mole  -------ct---cta
                       Tenrec  -------ct---caa
                     Aardvark  -------ct---ctg
                    Armadillo  -------ctgtactg
                         Pika  ---------------
              Star-nosed mole  ---------------
                          Rat  ===============
              Chinese hamster  ===============
                 Prairie vole  ===============
       Lesser Egyptian jerboa  ===============
             Brush-tailed rat  ---------------
          Pundamilia nyererei  ===============
                  Zebra mbuna  ===============
        Burton's mouthbreeder  ===============
                Scarlet macaw  ===============
                 Mallard duck  ===============
          Medium ground finch  ===============
                   Budgerigar  ===============
              Green seaturtle  ===============
          Collared flycatcher  ===============
       Spiny softshell turtle  ===============
     Chinese softshell turtle  ===============
                       Turkey  ===============
              Tasmanian devil  ===============
                      Wallaby  ===============
               Naked mole-rat  ===============
          Princess of Burundi  ===============
           Tibetan ground jay  ===============
                 Nile tilapia  ===============
                    Tetraodon  ===============
               Painted turtle  ===============
                      Chicken  ===============
           American alligator  ===============
           Southern platyfish  ===============
                   Coelacanth  ===============
                  Stickleback  ===============
       White-throated sparrow  ===============
             Peregrine falcon  ===============
                  Zebra finch  ===============
                 Saker falcon  ===============
                       Lizard  ===============
                  Rock pigeon  ===============
                       Medaka  ===============
                X. tropicalis  ===============
                      Opossum  ===============
                     Marmoset  ===============
                          Dog  ===============

Inserts between block 1 and 2 in window
B D                  Megabat 53bp
         Cape elephant shrew 243bp

Alignment block 2 of 357 in window, 41839888 - 41839890, 3 bps 
B D                     Human  ca-t
B D                     Chimp  ca-t
B D                   Gorilla  ca-t
B D                 Orangutan  ca-t
B D                    Gibbon  ca-t
B D                    Rhesus  ca-t
B D       Crab-eating macaque  ca-t
B D                    Baboon  ca-t
B D              Green monkey  ca-t
B D           Squirrel monkey  catt
B D                  Bushbaby  tt-t
           Chinese tree shrew  ca-t
B D                  Squirrel  ca-t
               Golden hamster  ta-t
B D                     Mouse  ta-c
B D                Guinea pig  ca-t
                   Chinchilla  ca-t
B D                    Rabbit  cg-t
B D                    Alpaca  ca-t
               Bactrian camel  ca-t
B D                   Dolphin  cg-g
                 Killer whale  cg-g
             Tibetan antelope  tg-g
B D                       Cow  cg-g
B D                     Sheep  tg-g
                Domestic goat  tg-g
B D                     Horse  ta-t
B D          White rhinoceros  ca-t
B D                       Cat  ca-t
B D                     Panda  ta-t
               Pacific walrus  tt-t
                 Weddell seal  ta-t
         David's myotis (bat)  ca-t
B D                  Microbat  ca-t
B D                  Hedgehog  ---t
B D                     Shrew  ---c
B D                  Elephant  tg-t
B D                   Manatee  tg-t
             Cape golden mole  ag-t
B D                    Tenrec  gg-t
                     Aardvark  tg-t
B D                 Armadillo  tg-t
B D                      Pika  ----
             Star-nosed mole  ----
B D                       Rat  ====
B D           Chinese hamster  ====
                Prairie vole  ====
      Lesser Egyptian jerboa  ====
            Brush-tailed rat  ----
         Cape elephant shrew  ====
         Pundamilia nyererei  ====
                 Zebra mbuna  ====
       Burton's mouthbreeder  ====
B D                   Megabat  ====
  D             Scarlet macaw  ====
  D              Mallard duck  ====
B D       Medium ground finch  ====
B D                Budgerigar  ====
  D           Green seaturtle  ====
  D       Collared flycatcher  ====
  D    Spiny softshell turtle  ====
  D  Chinese softshell turtle  ====
B D                    Turkey  ====
B D           Tasmanian devil  ====
B D                   Wallaby  ====
B D            Naked mole-rat  ====
         Princess of Burundi  ====
          Tibetan ground jay  ====
B D              Nile tilapia  ====
B D                 Tetraodon  ====
  D            Painted turtle  ====
B D                   Chicken  ====
B D        American alligator  ====
          Southern platyfish  ====
B D                Coelacanth  ====
B D               Stickleback  ====
  D    White-throated sparrow  ====
  D          Peregrine falcon  ====
B D               Zebra finch  ====
  D              Saker falcon  ====
B D                    Lizard  ====
  D               Rock pigeon  ====
B D                    Medaka  ====
B D             X. tropicalis  ====
B D                   Opossum  ====
B D                  Marmoset  ====
               Big brown bat  ----
            Black flying-fox  ----
B D                   Ferret   ----
B D                       Dog  ====

Inserts between block 2 and 3 in window
        David's myotis (bat) 51bp
B D                 Hedgehog 1bp
B D                    Shrew 2bp

Alignment block 3 of 357 in window, 41839891 - 41839893, 3 bps 
B D                     Human  ttt
B D                     Chimp  ttt
B D                   Gorilla  ttt
B D                 Orangutan  ttt
B D                    Gibbon  ttt
B D                    Rhesus  ttg
B D       Crab-eating macaque  ttg
B D                    Baboon  ttg
B D              Green monkey  ttg
B D           Squirrel monkey  ttt
B D                  Bushbaby  ttg
           Chinese tree shrew  tta
B D                  Squirrel  ttt
               Golden hamster  t--
B D                     Mouse  ttg
B D                Guinea pig  ttg
                   Chinchilla  ttg
B D                    Rabbit  ttc
B D                    Alpaca  ttt
               Bactrian camel  ttt
B D                   Dolphin  ttt
                 Killer whale  ttt
             Tibetan antelope  ttt
B D                       Cow  ttt
B D                     Sheep  ttt
                Domestic goat  ttt
B D                     Horse  ttt
B D          White rhinoceros  ttt
B D                       Cat  ttt
B D                     Panda  ttt
               Pacific walrus  ttt
                 Weddell seal  ttt
B D                  Microbat  tta
B D                     Shrew  gtt
B D                  Elephant  tct
B D                   Manatee  tgt
             Cape golden mole  ttg
B D                    Tenrec  ttg
                     Aardvark  ttt
B D                 Armadillo  gtg
B D                  Hedgehog  ===
B D                      Pika  ---
             Star-nosed mole  ---
B D                       Rat  ===
B D           Chinese hamster  ===
                Prairie vole  ===
      Lesser Egyptian jerboa  ===
            Brush-tailed rat  ---
         Cape elephant shrew  ===
         Pundamilia nyererei  ===
                 Zebra mbuna  ===
       Burton's mouthbreeder  ===
B D                   Megabat  ===
  D             Scarlet macaw  ===
  D              Mallard duck  ===
B D       Medium ground finch  ===
B D                Budgerigar  ===
  D           Green seaturtle  ===
  D       Collared flycatcher  ===
  D    Spiny softshell turtle  ===
  D  Chinese softshell turtle  ===
B D                    Turkey  ===
B D           Tasmanian devil  ===
B D                   Wallaby  ===
B D            Naked mole-rat  ===
         Princess of Burundi  ===
          Tibetan ground jay  ===
B D              Nile tilapia  ===
B D                 Tetraodon  ===
  D            Painted turtle  ===
B D                   Chicken  ===
B D        American alligator  ===
          Southern platyfish  ===
B D                Coelacanth  ===
B D               Stickleback  ===
  D    White-throated sparrow  ===
  D          Peregrine falcon  ===
B D               Zebra finch  ===
  D              Saker falcon  ===
B D                    Lizard  ===
  D               Rock pigeon  ===
B D                    Medaka  ===
B D             X. tropicalis  ===
B D                   Opossum  ===
B D                  Marmoset  ===
               Big brown bat  ---
        David's myotis (bat)  ===
            Black flying-fox  ---
B D                   Ferret   ---
B D                       Dog  ===

Inserts between block 3 and 4 in window
B D                 Squirrel 47bp
B D                   Rabbit 1bp

Alignment block 4 of 357 in window, 41839894 - 41839898, 5 bps 
B D                     Human  ttgtt----
B D                     Chimp  ttgtt----
B D                   Gorilla  ttgtt----
B D                 Orangutan  ttgtt----
B D                    Gibbon  ttgtt----
B D                    Rhesus  ttgtt----
B D       Crab-eating macaque  ttgtt----
B D                    Baboon  ttgtt----
B D              Green monkey  ttgtt----
B D           Squirrel monkey  ttgta----
B D                  Bushbaby  ttgtt----
           Chinese tree shrew  ttatt----
B D                     Mouse  gtgtt----
B D                Guinea pig  ttgtt----
                   Chinchilla  gtgtt----
B D                    Rabbit  ttct-----
B D                    Alpaca  t--------
               Bactrian camel  t--------
B D                   Dolphin  ttgtt----
                 Killer whale  ttgtt----
             Tibetan antelope  ttgtc----
B D                       Cow  ttgtc----
B D                     Sheep  ttgtc----
                Domestic goat  ttgtc----
B D                     Horse  tt-------
B D          White rhinoceros  ttgtt----
B D                       Cat  tttt-----
B D                     Panda  tcctc----
               Pacific walrus  ccctc----
                 Weddell seal  tcctc----
B D                  Microbat  ttgtt----
B D                     Shrew  ccgta----
B D                  Elephant  ----tt---
B D                   Manatee  ----tgttg
             Cape golden mole  ----tt---
B D                    Tenrec  ----t----
                     Aardvark  ----tctgt
B D                 Armadillo  ----tgtgt
B D                  Hedgehog  =========
B D                      Pika  ---------
             Star-nosed mole  ---------
B D                       Rat  =========
              Golden hamster  ---------
B D           Chinese hamster  =========
                Prairie vole  =========
      Lesser Egyptian jerboa  =========
            Brush-tailed rat  ---------
         Cape elephant shrew  =========
         Pundamilia nyererei  =========
                 Zebra mbuna  =========
       Burton's mouthbreeder  =========
B D                   Megabat  =========
  D             Scarlet macaw  =========
  D              Mallard duck  =========
B D       Medium ground finch  =========
B D                Budgerigar  =========
  D           Green seaturtle  =========
  D       Collared flycatcher  =========
  D    Spiny softshell turtle  =========
  D  Chinese softshell turtle  =========
B D                    Turkey  =========
B D           Tasmanian devil  =========
B D                   Wallaby  =========
B D            Naked mole-rat  =========
         Princess of Burundi  =========
          Tibetan ground jay  =========
B D              Nile tilapia  =========
B D                 Tetraodon  =========
  D            Painted turtle  =========
B D                   Chicken  =========
B D        American alligator  =========
          Southern platyfish  =========
B D                Coelacanth  =========
B D               Stickleback  =========
  D    White-throated sparrow  =========
  D          Peregrine falcon  =========
B D               Zebra finch  =========
  D              Saker falcon  =========
B D                    Lizard  =========
  D               Rock pigeon  =========
B D                    Medaka  =========
B D             X. tropicalis  =========
B D                   Opossum  =========
B D                  Marmoset  =========
               Big brown bat  ---------
B D                  Squirrel  =========
        David's myotis (bat)  =========
            Black flying-fox  ---------
B D                   Ferret   ---------
B D                       Dog  =========

Inserts between block 4 and 5 in window
B D                    Mouse 887bp
B D                   Alpaca 6bp
              Bactrian camel 6bp
B D                    Horse 49bp
B D                 Elephant 2bp
            Cape golden mole 14bp
B D                   Tenrec 12bp

Alignment block 5 of 357 in window, 41839899 - 41839901, 3 bps 
B D                     Human  gtt
B D                     Chimp  gtt
B D                   Gorilla  gtt
B D                 Orangutan  gtt
B D                    Gibbon  gtt
B D                    Rhesus  gtt
B D       Crab-eating macaque  gtt
B D                    Baboon  gtt
B D              Green monkey  gtt
B D           Squirrel monkey  gtt
B D                  Bushbaby  gtt
           Chinese tree shrew  att
               Golden hamster  gtt
B D                Guinea pig  gtt
                   Chinchilla  gtt
B D                    Rabbit  gtt
B D                   Dolphin  gct
                 Killer whale  gct
             Tibetan antelope  gct
B D                       Cow  gct
B D                     Sheep  gcc
                Domestic goat  gct
B D          White rhinoceros  gct
B D                     Panda  ggg
               Pacific walrus  gga
                 Weddell seal  gga
B D                     Shrew  ga-
B D                   Manatee  ttt
                     Aardvark  att
B D                 Armadillo  gta
B D                  Hedgehog  ===
B D                      Pika  ---
             Star-nosed mole  ---
B D                    Tenrec  ===
B D                       Rat  ===
B D                     Mouse  ===
B D           Chinese hamster  ===
                Prairie vole  ===
      Lesser Egyptian jerboa  ===
B D                    Alpaca  ===
            Brush-tailed rat  ---
         Cape elephant shrew  ===
         Pundamilia nyererei  ===
                 Zebra mbuna  ===
       Burton's mouthbreeder  ===
B D                   Megabat  ===
  D             Scarlet macaw  ===
  D              Mallard duck  ===
B D       Medium ground finch  ===
B D                Budgerigar  ===
  D           Green seaturtle  ===
  D       Collared flycatcher  ===
  D    Spiny softshell turtle  ===
  D  Chinese softshell turtle  ===
B D                    Turkey  ===
B D           Tasmanian devil  ===
B D                   Wallaby  ===
B D            Naked mole-rat  ===
B D                  Elephant  ===
         Princess of Burundi  ===
          Tibetan ground jay  ===
B D              Nile tilapia  ===
B D                 Tetraodon  ===
  D            Painted turtle  ===
B D                   Chicken  ===
B D        American alligator  ===
          Southern platyfish  ===
B D                Coelacanth  ===
B D               Stickleback  ===
  D    White-throated sparrow  ===
  D          Peregrine falcon  ===
B D               Zebra finch  ===
  D              Saker falcon  ===
B D                    Lizard  ===
  D               Rock pigeon  ===
B D                    Medaka  ===
B D             X. tropicalis  ===
            Cape golden mole  ===
B D                   Opossum  ===
B D                  Marmoset  ===
               Big brown bat  ---
B D                       Cat  ---
B D                  Squirrel  ===
B D                  Microbat  ---
        David's myotis (bat)  ===
            Black flying-fox  ---
B D                   Ferret   ---
B D                       Dog  ===
B D                     Horse  ===
              Bactrian camel  ===

Inserts between block 5 and 6 in window
B D                  Dolphin 3bp
                Killer whale 3bp

Alignment block 6 of 357 in window, 41839902 - 41839905, 4 bps 
B D                     Human  tatg-
B D                     Chimp  tatg-
B D                   Gorilla  tatg-
B D                 Orangutan  tatg-
B D                    Gibbon  tatg-
B D                    Rhesus  tatg-
B D       Crab-eating macaque  tatg-
B D                    Baboon  tata-
B D              Green monkey  tatg-
B D           Squirrel monkey  tgta-
B D                  Bushbaby  tgtg-
           Chinese tree shrew  tgca-
               Golden hamster  tgtg-
B D                Guinea pig  tgaa-
                   Chinchilla  t--a-
B D                    Rabbit  t----
B D                   Dolphin  tg-t-
                 Killer whale  tgtt-
B D                   Manatee  -tttg
                     Aardvark  -ttta
B D                 Armadillo  -gta-
B D                     Shrew  -----
B D                  Hedgehog  =====
B D                      Pika  -----
             Star-nosed mole  -----
B D                    Tenrec  =====
B D                       Rat  =====
B D                     Mouse  =====
B D           Chinese hamster  =====
                Prairie vole  =====
      Lesser Egyptian jerboa  =====
B D                    Alpaca  =====
            Brush-tailed rat  -----
         Cape elephant shrew  =====
         Pundamilia nyererei  =====
                 Zebra mbuna  =====
       Burton's mouthbreeder  =====
B D                   Megabat  =====
  D             Scarlet macaw  =====
  D              Mallard duck  =====
B D       Medium ground finch  =====
B D                Budgerigar  =====
  D           Green seaturtle  =====
  D       Collared flycatcher  =====
  D    Spiny softshell turtle  =====
  D  Chinese softshell turtle  =====
B D                    Turkey  =====
B D           Tasmanian devil  =====
B D                   Wallaby  =====
B D            Naked mole-rat  =====
B D                  Elephant  =====
B D                     Panda  -----
               Domestic goat  -----
B D                     Sheep  -----
B D                       Cow  -----
            Tibetan antelope  -----
         Princess of Burundi  =====
          Tibetan ground jay  =====
B D              Nile tilapia  =====
B D                 Tetraodon  =====
  D            Painted turtle  =====
B D                   Chicken  =====
B D        American alligator  =====
          Southern platyfish  =====
B D                Coelacanth  =====
B D               Stickleback  =====
  D    White-throated sparrow  =====
  D          Peregrine falcon  =====
B D               Zebra finch  =====
  D              Saker falcon  =====
B D                    Lizard  =====
  D               Rock pigeon  =====
B D                    Medaka  =====
B D             X. tropicalis  =====
            Cape golden mole  =====
B D                   Opossum  =====
                Weddell seal  -----
              Pacific walrus  -----
B D                  Marmoset  =====
               Big brown bat  -----
B D                       Cat  -----
B D                  Squirrel  =====
B D                  Microbat  -----
        David's myotis (bat)  =====
            Black flying-fox  -----
B D                   Ferret   -----
B D                       Dog  =====
B D          White rhinoceros  -----
B D                     Horse  =====
              Bactrian camel  =====

Inserts between block 6 and 7 in window
                    Aardvark 9bp

Alignment block 7 of 357 in window, 41839906 - 41839909, 4 bps 
B D                     Human  -tttt
B D                     Chimp  -tttt
B D                   Gorilla  -tttt
B D                 Orangutan  -tttt
B D                    Gibbon  -tttt
B D                    Rhesus  -tttt
B D       Crab-eating macaque  -tttt
B D                    Baboon  -tttt
B D              Green monkey  -tttt
B D           Squirrel monkey  -tttt
B D                  Bushbaby  -tttt
           Chinese tree shrew  -ttgt
               Golden hamster  -tat-
B D                Guinea pig  -tttc
                   Chinchilla  -tttc
B D                   Dolphin  -tttt
                 Killer whale  -tttt
B D                     Shrew  --cat
B D                   Manatee  tttt-
             Cape golden mole  accc-
B D                    Tenrec  act--
                     Aardvark  attt-
B D                 Armadillo  gttt-
B D                  Hedgehog  =====
B D                      Pika  -----
             Star-nosed mole  -----
B D                       Rat  =====
B D                     Mouse  =====
B D           Chinese hamster  =====
                Prairie vole  =====
      Lesser Egyptian jerboa  =====
B D                    Alpaca  =====
            Brush-tailed rat  -----
         Cape elephant shrew  =====
         Pundamilia nyererei  =====
                 Zebra mbuna  =====
       Burton's mouthbreeder  =====
B D                   Megabat  =====
  D             Scarlet macaw  =====
  D              Mallard duck  =====
B D       Medium ground finch  =====
B D                Budgerigar  =====
  D           Green seaturtle  =====
  D       Collared flycatcher  =====
  D    Spiny softshell turtle  =====
  D  Chinese softshell turtle  =====
B D                    Turkey  =====
B D           Tasmanian devil  =====
B D                   Wallaby  =====
B D            Naked mole-rat  =====
B D                  Elephant  =====
B D                    Rabbit  -----
B D                     Panda  -----
               Domestic goat  -----
B D                     Sheep  -----
B D                       Cow  -----
            Tibetan antelope  -----
         Princess of Burundi  =====
          Tibetan ground jay  =====
B D              Nile tilapia  =====
B D                 Tetraodon  =====
  D            Painted turtle  =====
B D                   Chicken  =====
B D        American alligator  =====
          Southern platyfish  =====
B D                Coelacanth  =====
B D               Stickleback  =====
  D    White-throated sparrow  =====
  D          Peregrine falcon  =====
B D               Zebra finch  =====
  D              Saker falcon  =====
B D                    Lizard  =====
  D               Rock pigeon  =====
B D                    Medaka  =====
B D             X. tropicalis  =====
B D                   Opossum  =====
                Weddell seal  -----
              Pacific walrus  -----
B D                  Marmoset  =====
               Big brown bat  -----
B D                       Cat  -----
B D                  Squirrel  =====
B D                  Microbat  -----
        David's myotis (bat)  =====
            Black flying-fox  -----
B D                   Ferret   -----
B D                       Dog  =====
B D          White rhinoceros  -----
B D                     Horse  =====
              Bactrian camel  =====

Inserts between block 7 and 8 in window
B D               Guinea pig 339bp

Alignment block 8 of 357 in window, 41839910 - 41839925, 16 bps 
B D                     Human  ccaagagcttat----aata
B D                     Chimp  ccaagagcttat----aata
B D                   Gorilla  ccaagagcttat----aata
B D                 Orangutan  ccaagagcttat----aata
B D                    Gibbon  ccaagagcttat----aata
B D                    Rhesus  ccaagggcttat----aata
B D       Crab-eating macaque  ccaagggcttat----aata
B D                    Baboon  ccaagggcttat----aata
B D              Green monkey  ccaagggcttat----aata
B D           Squirrel monkey  ccaaggcctttt----aata
B D                  Bushbaby  ccaaggactt----------
           Chinese tree shrew  cctagggctcat----aata
                   Chinchilla  cgtagggct-----------
B D                   Dolphin  cctagcgctcatagta----
                 Killer whale  cctagcgctcatagta----
B D                     Panda  -------cttgt--------
               Pacific walrus  -------cttat--------
                 Weddell seal  -------cttat--------
B D                  Hedgehog  -------cacat--------
B D                     Shrew  gtaaactcagat--------
B D                   Manatee  cctagggtttat----aat-
             Cape golden mole  tctagagttaat----aat-
                     Aardvark  ctgagggtgtat----aat-
B D                 Armadillo  cctaggatttat----aat-
B D                      Pika  --------------------
             Star-nosed mole  --------------------
B D                    Tenrec  --------------------
B D                       Rat  ====================
B D                     Mouse  ====================
              Golden hamster  --------------------
B D           Chinese hamster  ====================
                Prairie vole  ====================
      Lesser Egyptian jerboa  ====================
B D                    Alpaca  ====================
B D                Guinea pig  ====================
            Brush-tailed rat  --------------------
         Cape elephant shrew  ====================
         Pundamilia nyererei  ====================
                 Zebra mbuna  ====================
       Burton's mouthbreeder  ====================
B D                   Megabat  ====================
  D             Scarlet macaw  ====================
  D              Mallard duck  ====================
B D       Medium ground finch  ====================
B D                Budgerigar  ====================
  D           Green seaturtle  ====================
  D       Collared flycatcher  ====================
  D    Spiny softshell turtle  ====================
  D  Chinese softshell turtle  ====================
B D                    Turkey  ====================
B D           Tasmanian devil  ====================
B D                   Wallaby  ====================
B D            Naked mole-rat  ====================
B D                  Elephant  ====================
B D                    Rabbit  --------------------
               Domestic goat  --------------------
B D                     Sheep  --------------------
B D                       Cow  --------------------
            Tibetan antelope  --------------------
         Princess of Burundi  ====================
          Tibetan ground jay  ====================
B D              Nile tilapia  ====================
B D                 Tetraodon  ====================
  D            Painted turtle  ====================
B D                   Chicken  ====================
B D        American alligator  ====================
          Southern platyfish  ====================
B D                Coelacanth  ====================
B D               Stickleback  ====================
  D    White-throated sparrow  ====================
  D          Peregrine falcon  ====================
B D               Zebra finch  ====================
  D              Saker falcon  ====================
B D                    Lizard  ====================
  D               Rock pigeon  ====================
B D                    Medaka  ====================
B D             X. tropicalis  ====================
B D                   Opossum  ====================
B D                  Marmoset  ====================
               Big brown bat  --------------------
B D                       Cat  --------------------
B D                  Squirrel  ====================
B D                  Microbat  --------------------
        David's myotis (bat)  ====================
            Black flying-fox  --------------------
B D                   Ferret   --------------------
B D                       Dog  ====================
B D          White rhinoceros  --------------------
B D                     Horse  ====================
              Bactrian camel  ====================

Inserts between block 8 and 9 in window
                Killer whale 5bp
B D                 Hedgehog 6bp
B D                    Shrew 9bp

Alignment block 9 of 357 in window, 41839926 - 41839936, 11 bps 
B D                     Human  aatagtcccat
B D                     Chimp  aatagtcccat
B D                   Gorilla  aatagtcccat
B D                 Orangutan  aatagtcccat
B D                    Gibbon  aatagtcccat
B D                    Rhesus  aatagtcccat
B D       Crab-eating macaque  aatagtcccat
B D                    Baboon  aatagtcccat
B D              Green monkey  aatagtcccat
B D           Squirrel monkey  aatcgtcccac
B D                  Bushbaby  -acagttccat
           Chinese tree shrew  a----tcccat
               Golden hamster  -------ccac
                   Chinchilla  -------tcat
                 Killer whale  attt-------
B D                     Panda  aatagccccaa
               Pacific walrus  aatagcaccag
                 Weddell seal  aatagcaccag
                Big brown bat  --------cat
B D                     Shrew  aattgacaaat
B D                   Manatee  ---agtcctac
             Cape golden mole  -----tcttat
                     Aardvark  ---gctcccac
B D                 Armadillo  ---agtccttc
B D                  Hedgehog  ===========
B D                      Pika  -----------
             Star-nosed mole  -----------
B D                    Tenrec  -----------
B D                       Rat  ===========
B D                     Mouse  ===========
B D           Chinese hamster  ===========
                Prairie vole  ===========
      Lesser Egyptian jerboa  ===========
B D                    Alpaca  ===========
B D                Guinea pig  ===========
            Brush-tailed rat  -----------
         Cape elephant shrew  ===========
         Pundamilia nyererei  ===========
                 Zebra mbuna  ===========
       Burton's mouthbreeder  ===========
B D                   Megabat  ===========
  D             Scarlet macaw  ===========
  D              Mallard duck  ===========
B D       Medium ground finch  ===========
B D                Budgerigar  ===========
  D           Green seaturtle  ===========
  D       Collared flycatcher  ===========
  D    Spiny softshell turtle  ===========
  D  Chinese softshell turtle  ===========
B D                    Turkey  ===========
B D           Tasmanian devil  ===========
B D                   Wallaby  ===========
B D            Naked mole-rat  ===========
B D                  Elephant  ===========
B D                    Rabbit  -----------
               Domestic goat  -----------
B D                     Sheep  -----------
B D                       Cow  -----------
            Tibetan antelope  -----------
         Princess of Burundi  ===========
          Tibetan ground jay  ===========
B D              Nile tilapia  ===========
B D                 Tetraodon  ===========
  D            Painted turtle  ===========
B D                   Chicken  ===========
B D        American alligator  ===========
          Southern platyfish  ===========
B D                Coelacanth  ===========
B D               Stickleback  ===========
  D    White-throated sparrow  ===========
  D          Peregrine falcon  ===========
B D               Zebra finch  ===========
  D              Saker falcon  ===========
B D                    Lizard  ===========
  D               Rock pigeon  ===========
B D                    Medaka  ===========
B D             X. tropicalis  ===========
B D                   Opossum  ===========
B D                  Marmoset  ===========
B D                       Cat  -----------
B D                  Squirrel  ===========
B D                  Microbat  -----------
        David's myotis (bat)  ===========
            Black flying-fox  -----------
B D                   Ferret   -----------
B D                       Dog  ===========
B D          White rhinoceros  -----------
B D                     Horse  ===========
              Bactrian camel  ===========

Inserts between block 9 and 10 in window
                  Chinchilla 8bp

Alignment block 10 of 357 in window, 41839937 - 41839937, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                   Gorilla  t
B D                 Orangutan  t
B D                    Gibbon  t
B D                    Rhesus  t
B D       Crab-eating macaque  t
B D                    Baboon  t
B D              Green monkey  t
B D           Squirrel monkey  t
B D                  Bushbaby  t
           Chinese tree shrew  t
               Golden hamster  t
                   Chinchilla  t
             Brush-tailed rat  t
B D                     Panda  t
               Pacific walrus  t
                 Weddell seal  t
                Big brown bat  t
B D                     Shrew  t
B D                   Manatee  t
             Cape golden mole  t
                     Aardvark  t
B D                 Armadillo  t
B D                  Hedgehog  =
B D                      Pika  -
             Star-nosed mole  -
B D                    Tenrec  -
B D                       Rat  =
B D                     Mouse  =
B D           Chinese hamster  =
                Prairie vole  =
      Lesser Egyptian jerboa  =
B D                    Alpaca  =
B D                Guinea pig  =
         Cape elephant shrew  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
B D                   Megabat  =
  D             Scarlet macaw  =
  D              Mallard duck  =
B D       Medium ground finch  =
B D                Budgerigar  =
  D           Green seaturtle  =
  D       Collared flycatcher  =
  D    Spiny softshell turtle  =
  D  Chinese softshell turtle  =
B D                    Turkey  =
B D           Tasmanian devil  =
B D                   Wallaby  =
B D            Naked mole-rat  =
B D                  Elephant  =
B D                    Rabbit  -
               Domestic goat  -
B D                     Sheep  -
B D                       Cow  -
            Tibetan antelope  -
         Princess of Burundi  =
          Tibetan ground jay  =
B D              Nile tilapia  =
B D                 Tetraodon  =
  D            Painted turtle  =
B D                   Chicken  =
B D        American alligator  =
          Southern platyfish  =
B D                Coelacanth  =
B D               Stickleback  =
  D    White-throated sparrow  =
  D          Peregrine falcon  =
B D               Zebra finch  =
  D              Saker falcon  =
B D                    Lizard  =
  D               Rock pigeon  =
B D                    Medaka  =
B D             X. tropicalis  =
B D                   Opossum  =
B D                  Marmoset  =
B D                       Cat  -
B D                  Squirrel  =
B D                  Microbat  -
        David's myotis (bat)  =
            Black flying-fox  -
B D                   Ferret   -
B D                       Dog  =
B D          White rhinoceros  -
B D                     Horse  =
                Killer whale  -
              Bactrian camel  =

Inserts between block 10 and 11 in window
B D                    Shrew 85bp

Alignment block 11 of 357 in window, 41839938 - 41839938, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                   Gorilla  t
B D                 Orangutan  t
B D                    Gibbon  t
B D                    Rhesus  t
B D       Crab-eating macaque  t
B D                    Baboon  t
B D              Green monkey  t
B D           Squirrel monkey  t
B D                  Bushbaby  t
           Chinese tree shrew  t
               Golden hamster  c
                   Chinchilla  t
             Brush-tailed rat  t
B D                     Panda  t
               Pacific walrus  t
                 Weddell seal  t
             Black flying-fox  t
                Big brown bat  t
B D                  Hedgehog  t
B D                   Manatee  t
             Cape golden mole  c
                     Aardvark  t
B D                 Armadillo  t
B D                     Shrew  =
B D                      Pika  -
             Star-nosed mole  -
B D                    Tenrec  -
B D                       Rat  =
B D                     Mouse  =
B D           Chinese hamster  =
                Prairie vole  =
      Lesser Egyptian jerboa  =
B D                    Alpaca  =
B D                Guinea pig  =
         Cape elephant shrew  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
B D                   Megabat  =
  D             Scarlet macaw  =
  D              Mallard duck  =
B D       Medium ground finch  =
B D                Budgerigar  =
  D           Green seaturtle  =
  D       Collared flycatcher  =
  D    Spiny softshell turtle  =
  D  Chinese softshell turtle  =
B D                    Turkey  =
B D           Tasmanian devil  =
B D                   Wallaby  =
B D            Naked mole-rat  =
B D                  Elephant  =
B D                    Rabbit  -
               Domestic goat  -
B D                     Sheep  -
B D                       Cow  -
            Tibetan antelope  -
         Princess of Burundi  =
          Tibetan ground jay  =
B D              Nile tilapia  =
B D                 Tetraodon  =
  D            Painted turtle  =
B D                   Chicken  =
B D        American alligator  =
          Southern platyfish  =
B D                Coelacanth  =
B D               Stickleback  =
  D    White-throated sparrow  =
  D          Peregrine falcon  =
B D               Zebra finch  =
  D              Saker falcon  =
B D                    Lizard  =
  D               Rock pigeon  =
B D                    Medaka  =
B D             X. tropicalis  =
B D                   Opossum  =
B D                  Marmoset  =
B D                       Cat  -
B D                  Squirrel  =
B D                  Microbat  -
        David's myotis (bat)  =
B D                   Ferret   -
B D                       Dog  =
B D          White rhinoceros  -
B D                     Horse  =
                Killer whale  -
              Bactrian camel  =

Alignment block 12 of 357 in window, 41839939 - 41839939, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D           Squirrel monkey  a
B D                  Bushbaby  a
           Chinese tree shrew  a
               Golden hamster  a
                   Chinchilla  a
             Brush-tailed rat  g
                 Killer whale  a
B D                       Cat  a
B D                     Panda  a
               Pacific walrus  a
                 Weddell seal  a
             Black flying-fox  a
                Big brown bat  a
B D                  Hedgehog  a
B D                   Manatee  a
             Cape golden mole  a
                     Aardvark  a
B D                 Armadillo  a
B D                     Shrew  =
B D                      Pika  -
             Star-nosed mole  -
B D                    Tenrec  -
B D                       Rat  =
B D                     Mouse  =
B D           Chinese hamster  =
                Prairie vole  =
      Lesser Egyptian jerboa  =
B D                    Alpaca  =
B D                Guinea pig  =
         Cape elephant shrew  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
B D                   Megabat  =
  D             Scarlet macaw  =
  D              Mallard duck  =
B D       Medium ground finch  =
B D                Budgerigar  =
  D           Green seaturtle  =
  D       Collared flycatcher  =
  D    Spiny softshell turtle  =
  D  Chinese softshell turtle  =
B D                    Turkey  =
B D           Tasmanian devil  =
B D                   Wallaby  =
B D            Naked mole-rat  =
B D                  Elephant  =
B D                    Rabbit  -
               Domestic goat  -
B D                     Sheep  -
B D                       Cow  -
            Tibetan antelope  -
         Princess of Burundi  =
          Tibetan ground jay  =
B D              Nile tilapia  =
B D                 Tetraodon  =
  D            Painted turtle  =
B D                   Chicken  =
B D        American alligator  =
          Southern platyfish  =
B D                Coelacanth  =
B D               Stickleback  =
  D    White-throated sparrow  =
  D          Peregrine falcon  =
B D               Zebra finch  =
  D              Saker falcon  =
B D                    Lizard  =
  D               Rock pigeon  =
B D                    Medaka  =
B D             X. tropicalis  =
B D                   Opossum  =
B D                  Marmoset  =
B D                  Squirrel  =
B D                  Microbat  -
        David's myotis (bat)  =
B D                   Ferret   -
B D                       Dog  =
B D          White rhinoceros  -
B D                     Horse  =
              Bactrian camel  =

Alignment block 13 of 357 in window, 41839940 - 41839941, 2 bps 
B D                     Human  tt
B D                     Chimp  tt
B D                   Gorilla  tt
B D                 Orangutan  tt
B D                    Gibbon  tt
B D                    Rhesus  tt
B D       Crab-eating macaque  tt
B D                    Baboon  tt
B D              Green monkey  tt
B D           Squirrel monkey  ct
B D                  Bushbaby  tt
               Golden hamster  ct
                   Chinchilla  tt
             Brush-tailed rat  tg
B D                    Rabbit  tg
                 Killer whale  tt
B D                       Cat  tt
B D                     Panda  tt
               Pacific walrus  tt
                 Weddell seal  tt
             Black flying-fox  tc
                Big brown bat  tt
B D                  Hedgehog  ct
B D                   Manatee  tt
             Cape golden mole  tt
                     Aardvark  ct
B D                 Armadillo  tc
B D                     Shrew  ==
B D                      Pika  --
             Star-nosed mole  --
B D                    Tenrec  --
B D                       Rat  ==
B D                     Mouse  ==
B D           Chinese hamster  ==
                Prairie vole  ==
      Lesser Egyptian jerboa  ==
B D                    Alpaca  ==
B D                Guinea pig  ==
         Cape elephant shrew  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
B D                   Megabat  ==
  D             Scarlet macaw  ==
  D              Mallard duck  ==
B D       Medium ground finch  ==
B D                Budgerigar  ==
  D           Green seaturtle  ==
  D       Collared flycatcher  ==
  D    Spiny softshell turtle  ==
  D  Chinese softshell turtle  ==
B D                    Turkey  ==
B D           Tasmanian devil  ==
B D                   Wallaby  ==
          Chinese tree shrew  --
B D            Naked mole-rat  ==
B D                  Elephant  ==
               Domestic goat  --
B D                     Sheep  --
B D                       Cow  --
            Tibetan antelope  --
         Princess of Burundi  ==
          Tibetan ground jay  ==
B D              Nile tilapia  ==
B D                 Tetraodon  ==
  D            Painted turtle  ==
B D                   Chicken  ==
B D        American alligator  ==
          Southern platyfish  ==
B D                Coelacanth  ==
B D               Stickleback  ==
  D    White-throated sparrow  ==
  D          Peregrine falcon  ==
B D               Zebra finch  ==
  D              Saker falcon  ==
B D                    Lizard  ==
  D               Rock pigeon  ==
B D                    Medaka  ==
B D             X. tropicalis  ==
B D                   Opossum  ==
B D                  Marmoset  ==
B D                  Squirrel  ==
B D                  Microbat  --
        David's myotis (bat)  ==
B D                   Ferret   --
B D                       Dog  ==
B D          White rhinoceros  --
B D                     Horse  ==
              Bactrian camel  ==

Inserts between block 13 and 14 in window
               Big brown bat 53bp

Alignment block 14 of 357 in window, 41839942 - 41839945, 4 bps 
B D                     Human  caca----
B D                     Chimp  caca----
B D                   Gorilla  caca----
B D                 Orangutan  caca----
B D                    Gibbon  caca----
B D                    Rhesus  caca----
B D       Crab-eating macaque  caca----
B D           Squirrel monkey  caca----
B D                  Bushbaby  cact----
               Golden hamster  cact----
                   Chinchilla  cttt----
             Brush-tailed rat  caca----
B D                    Rabbit  cttt----
                 Killer whale  c-------
B D                       Cat  --ta----
B D                     Panda  --ca----
               Pacific walrus  --ca----
                 Weddell seal  --cg----
             Black flying-fox  taca----
B D                  Hedgehog  --c-----
B D                   Manatee  --ca----
             Cape golden mole  --agca--
                     Aardvark  --ca----
B D                 Armadillo  --ca--ct
B D                     Shrew  ========
B D                      Pika  --------
             Star-nosed mole  --------
B D                    Tenrec  --------
B D                       Rat  ========
B D                     Mouse  ========
B D           Chinese hamster  ========
                Prairie vole  ========
      Lesser Egyptian jerboa  ========
B D                    Alpaca  ========
B D                    Baboon  --------
B D                Guinea pig  ========
         Cape elephant shrew  ========
         Pundamilia nyererei  ========
                 Zebra mbuna  ========
       Burton's mouthbreeder  ========
B D                   Megabat  ========
  D             Scarlet macaw  ========
  D              Mallard duck  ========
B D       Medium ground finch  ========
B D                Budgerigar  ========
  D           Green seaturtle  ========
  D       Collared flycatcher  ========
  D    Spiny softshell turtle  ========
  D  Chinese softshell turtle  ========
B D                    Turkey  ========
B D           Tasmanian devil  ========
B D                   Wallaby  ========
          Chinese tree shrew  --------
B D            Naked mole-rat  ========
B D                  Elephant  ========
               Domestic goat  --------
B D                     Sheep  --------
B D                       Cow  --------
            Tibetan antelope  --------
         Princess of Burundi  ========
          Tibetan ground jay  ========
B D              Nile tilapia  ========
B D                 Tetraodon  ========
  D            Painted turtle  ========
B D                   Chicken  ========
B D        American alligator  ========
          Southern platyfish  ========
B D                Coelacanth  ========
B D               Stickleback  ========
  D    White-throated sparrow  ========
  D          Peregrine falcon  ========
B D               Zebra finch  ========
  D              Saker falcon  ========
B D                    Lizard  ========
  D               Rock pigeon  ========
B D                    Medaka  ========
B D             X. tropicalis  ========
B D                   Opossum  ========
B D                  Marmoset  ========
               Big brown bat  ========
B D                  Squirrel  ========
B D                  Microbat  --------
        David's myotis (bat)  ========
B D                   Ferret   --------
B D                       Dog  ========
B D          White rhinoceros  --------
B D                     Horse  ========
              Bactrian camel  ========
B D              Green monkey  --------

Inserts between block 14 and 15 in window
B D                      Cat 4bp
B D                    Panda 2bp
              Pacific walrus 2bp
                Weddell seal 2bp
B D                  Manatee 2bp
            Cape golden mole 696bp
                    Aardvark 2bp

Alignment block 15 of 357 in window, 41839946 - 41839956, 11 bps 
B D                     Human  t--gcttagtttc
B D                     Chimp  t--gcttagtttc
B D                   Gorilla  t--gcttagtttc
B D                 Orangutan  t--gcttagtttc
B D                    Gibbon  t--gcttagtttc
B D                    Rhesus  t--gcttagtttc
B D       Crab-eating macaque  t--gcttagtttc
B D           Squirrel monkey  t--gcttagtttc
B D                  Bushbaby  a--gcttagtttc
               Golden hamster  t--tcttagtttc
                   Chinchilla  t--actttatatg
             Brush-tailed rat  g--gttttgt---
B D                    Rabbit  g--ctttgct---
B D                    Alpaca  ---gtttg-----
               Bactrian camel  ---gttag-----
                 Killer whale  ---acttg-----
             Tibetan antelope  ---gtttg-----
B D                       Cow  ---ctttg-----
B D                     Sheep  ---gtttg-----
                Domestic goat  ---gtttg-----
B D          White rhinoceros  ---gtttg-----
B D                       Cat  --caattt-----
               Pacific walrus  --tgctta-----
                 Weddell seal  --tgctta-----
             Black flying-fox  tttggctg-----
B D                  Hedgehog  ---ttctg-----
B D                  Elephant  --ttttttttttt
B D                   Manatee  --tgcttagcttc
B D                    Tenrec  --tgcttagtttc
                     Aardvark  --tgcttgttcta
B D                 Armadillo  --tgcttagtatc
B D                     Shrew  =============
B D                      Pika  -------------
             Star-nosed mole  -------------
B D                       Rat  =============
B D                     Mouse  =============
B D           Chinese hamster  =============
                Prairie vole  =============
      Lesser Egyptian jerboa  =============
B D                    Baboon  -------------
B D                Guinea pig  =============
         Cape elephant shrew  =============
         Pundamilia nyererei  =============
                 Zebra mbuna  =============
       Burton's mouthbreeder  =============
B D                   Megabat  =============
  D             Scarlet macaw  =============
  D              Mallard duck  =============
B D       Medium ground finch  =============
B D                Budgerigar  =============
  D           Green seaturtle  =============
  D       Collared flycatcher  =============
  D    Spiny softshell turtle  =============
  D  Chinese softshell turtle  =============
B D                    Turkey  =============
B D           Tasmanian devil  =============
B D                   Wallaby  =============
          Chinese tree shrew  -------------
B D            Naked mole-rat  =============
B D                     Panda  =============
         Princess of Burundi  =============
          Tibetan ground jay  =============
B D              Nile tilapia  =============
B D                 Tetraodon  =============
  D            Painted turtle  =============
B D                   Chicken  =============
B D        American alligator  =============
          Southern platyfish  =============
B D                Coelacanth  =============
B D               Stickleback  =============
  D    White-throated sparrow  =============
  D          Peregrine falcon  =============
B D               Zebra finch  =============
  D              Saker falcon  =============
B D                    Lizard  =============
  D               Rock pigeon  =============
B D                    Medaka  =============
B D             X. tropicalis  =============
            Cape golden mole  =============
B D                   Opossum  =============
B D                  Marmoset  =============
               Big brown bat  =============
B D                  Squirrel  =============
B D                  Microbat  -------------
        David's myotis (bat)  =============
B D                   Ferret   -------------
B D                       Dog  =============
B D                     Horse  =============
B D              Green monkey  -------------

Inserts between block 15 and 16 in window
B D          Squirrel monkey 353bp
B D                Armadillo 73bp

Alignment block 16 of 357 in window, 41839957 - 41839957, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                   Gorilla  t
B D                 Orangutan  t
B D                    Gibbon  t
B D                    Rhesus  t
B D           Squirrel monkey  t
B D                  Bushbaby  t
               Golden hamster  c
                   Chinchilla  t
B D                    Alpaca  t
               Bactrian camel  t
                 Killer whale  c
             Tibetan antelope  t
B D                       Cow  t
B D                     Sheep  t
                Domestic goat  t
B D          White rhinoceros  t
B D                       Cat  t
               Pacific walrus  c
                 Weddell seal  c
             Black flying-fox  t
B D                  Hedgehog  t
B D                  Elephant  t
B D                   Manatee  t
B D                    Tenrec  a
                     Aardvark  c
B D                     Shrew  =
B D                      Pika  -
             Star-nosed mole  -
B D                       Rat  =
B D                     Mouse  =
B D           Chinese hamster  =
                Prairie vole  =
      Lesser Egyptian jerboa  =
B D                    Baboon  -
B D                Guinea pig  =
            Brush-tailed rat  -
         Cape elephant shrew  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
B D                   Megabat  =
  D             Scarlet macaw  =
  D              Mallard duck  =
B D       Medium ground finch  =
B D                Budgerigar  =
  D           Green seaturtle  =
  D       Collared flycatcher  =
  D    Spiny softshell turtle  =
  D  Chinese softshell turtle  =
B D                    Turkey  =
B D           Tasmanian devil  =
B D                   Wallaby  =
B D                 Armadillo  =
          Chinese tree shrew  -
B D            Naked mole-rat  =
B D                    Rabbit  -
B D                     Panda  =
         Princess of Burundi  =
          Tibetan ground jay  =
B D              Nile tilapia  =
B D                 Tetraodon  =
  D            Painted turtle  =
B D                   Chicken  =
B D        American alligator  =
          Southern platyfish  =
B D                Coelacanth  =
B D               Stickleback  =
  D    White-throated sparrow  =
  D          Peregrine falcon  =
B D               Zebra finch  =
  D              Saker falcon  =
B D                    Lizard  =
  D               Rock pigeon  =
B D                    Medaka  =
B D             X. tropicalis  =
            Cape golden mole  =
B D                   Opossum  =
B D                  Marmoset  =
               Big brown bat  =
B D                  Squirrel  =
B D                  Microbat  -
        David's myotis (bat)  =
B D                   Ferret   -
B D                       Dog  =
B D                     Horse  =
B D              Green monkey  -
B D       Crab-eating macaque  -

Inserts between block 16 and 17 in window
B D                   Rhesus 555bp
B D          Squirrel monkey 2bp
B D                 Bushbaby 3bp

Alignment block 17 of 357 in window, 41839958 - 41839959, 2 bps 
B D                     Human  -tt
B D                     Chimp  -tt
B D                   Gorilla  -tt
B D                 Orangutan  -tt
B D                    Gibbon  -tt
B D           Squirrel monkey  -tt
B D                  Bushbaby  -t-
               Golden hamster  -ct
                   Chinchilla  -tc
                 Killer whale  -tt
             Tibetan antelope  -tt
B D                       Cow  -tt
B D                     Sheep  -tt
                Domestic goat  -tt
B D          White rhinoceros  -at
B D                       Cat  -tt
               Pacific walrus  -tt
                 Weddell seal  -tt
             Black flying-fox  -tt
B D                  Elephant  ct-
B D                   Manatee  at-
B D                    Tenrec  at-
                     Aardvark  gt-
B D                     Shrew  ===
B D                  Hedgehog  ---
B D                      Pika  ---
             Star-nosed mole  ---
B D                       Rat  ===
B D                     Mouse  ===
B D           Chinese hamster  ===
                Prairie vole  ===
      Lesser Egyptian jerboa  ===
B D                    Alpaca  ---
B D                    Baboon  ---
B D                Guinea pig  ===
            Brush-tailed rat  ---
         Cape elephant shrew  ===
         Pundamilia nyererei  ===
                 Zebra mbuna  ===
       Burton's mouthbreeder  ===
B D                   Megabat  ===
  D             Scarlet macaw  ===
  D              Mallard duck  ===
B D       Medium ground finch  ===
B D                Budgerigar  ===
  D           Green seaturtle  ===
  D       Collared flycatcher  ===
  D    Spiny softshell turtle  ===
  D  Chinese softshell turtle  ===
B D                    Turkey  ===
B D           Tasmanian devil  ===
B D                   Wallaby  ===
B D                 Armadillo  ===
          Chinese tree shrew  ---
B D            Naked mole-rat  ===
B D                    Rabbit  ---
B D                     Panda  ===
         Princess of Burundi  ===
          Tibetan ground jay  ===
B D              Nile tilapia  ===
B D                 Tetraodon  ===
  D            Painted turtle  ===
B D                   Chicken  ===
B D        American alligator  ===
          Southern platyfish  ===
B D                Coelacanth  ===
B D               Stickleback  ===
  D    White-throated sparrow  ===
  D          Peregrine falcon  ===
B D               Zebra finch  ===
  D              Saker falcon  ===
B D                    Lizard  ===
  D               Rock pigeon  ===
B D                    Medaka  ===
B D             X. tropicalis  ===
            Cape golden mole  ===
B D                   Opossum  ===
B D                  Marmoset  ===
               Big brown bat  ===
B D                  Squirrel  ===
B D                  Microbat  ---
        David's myotis (bat)  ===
B D                   Ferret   ---
B D                       Dog  ===
B D                     Horse  ===
              Bactrian camel  ---
B D              Green monkey  ---
B D       Crab-eating macaque  ---
B D                    Rhesus  ===

Inserts between block 17 and 18 in window
B D                    Chimp 5bp
B D                Orangutan 14bp
              Golden hamster 2bp
B D                      Cat 1bp
              Pacific walrus 6bp
                Weddell seal 97bp
            Black flying-fox 1bp

Alignment block 18 of 357 in window, 41839960 - 41839961, 2 bps 
B D                     Human  tt
B D                     Chimp  tt
B D                 Orangutan  tt
               Golden hamster  -t
B D                    Rabbit  tt
                 Killer whale  ac
             Tibetan antelope  tt
B D                     Sheep  tt
                Domestic goat  tt
             Black flying-fox  ta
B D                  Hedgehog  gt
B D                  Elephant  gt
B D                   Manatee  gt
B D                    Tenrec  tt
                     Aardvark  tt
B D                     Shrew  ==
B D                      Pika  --
             Star-nosed mole  --
B D                       Rat  ==
B D                     Mouse  ==
B D           Chinese hamster  ==
                Prairie vole  ==
      Lesser Egyptian jerboa  ==
B D                    Alpaca  --
B D                    Baboon  --
                  Chinchilla  --
B D                Guinea pig  ==
            Brush-tailed rat  --
         Cape elephant shrew  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
B D                   Megabat  ==
  D             Scarlet macaw  ==
  D              Mallard duck  ==
B D       Medium ground finch  ==
B D                Budgerigar  ==
  D           Green seaturtle  ==
  D       Collared flycatcher  ==
  D    Spiny softshell turtle  ==
  D  Chinese softshell turtle  ==
B D                    Turkey  ==
B D           Tasmanian devil  ==
B D                   Wallaby  ==
B D                 Armadillo  ==
          Chinese tree shrew  --
B D            Naked mole-rat  ==
B D                     Panda  ==
B D                       Cow  --
         Princess of Burundi  ==
          Tibetan ground jay  ==
B D              Nile tilapia  ==
B D                 Tetraodon  ==
  D            Painted turtle  ==
B D                   Chicken  ==
B D        American alligator  ==
          Southern platyfish  ==
B D                Coelacanth  ==
B D               Stickleback  ==
  D    White-throated sparrow  ==
  D          Peregrine falcon  ==
B D               Zebra finch  ==
  D              Saker falcon  ==
B D                    Lizard  ==
  D               Rock pigeon  ==
B D                    Medaka  ==
B D             X. tropicalis  ==
            Cape golden mole  ==
B D                   Opossum  ==
B D                   Gorilla  --
                Weddell seal  ==
              Pacific walrus  ==
B D                  Marmoset  ==
               Big brown bat  ==
B D                       Cat  ==
B D                  Bushbaby  --
B D                  Squirrel  ==
B D                  Microbat  --
        David's myotis (bat)  ==
B D                   Ferret   --
B D                       Dog  ==
B D          White rhinoceros  --
B D                     Horse  ==
              Bactrian camel  --
B D           Squirrel monkey  --
B D              Green monkey  --
B D       Crab-eating macaque  --
B D                    Rhesus  ==
B D                    Gibbon  --

Inserts between block 18 and 19 in window
              Golden hamster 4bp
B D                   Rabbit 9bp

Alignment block 19 of 357 in window, 41839962 - 41839963, 2 bps 
B D                     Human  tt---------
B D                     Chimp  tt---------
B D                 Orangutan  tt---------
B D                  Marmoset  tc---------
B D           Squirrel monkey  tc---------
B D                  Bushbaby  tc---------
               Golden hamster  tc---------
B D                    Rabbit  tt---------
                 Killer whale  tt---------
             Tibetan antelope  tt---------
B D                     Sheep  tt---------
                Domestic goat  tt---------
B D          White rhinoceros  tt---------
B D                       Cat  tt---------
               Pacific walrus  tt---------
             Black flying-fox  tt---------
B D                  Hedgehog  tt---------
B D                  Elephant  -t---------
B D                   Manatee  -t---------
B D                    Tenrec  -tttcattacc
                     Aardvark  -t---------
B D                     Shrew  ===========
B D                      Pika  -----------
             Star-nosed mole  -----------
B D                       Rat  ===========
B D                     Mouse  ===========
B D           Chinese hamster  ===========
                Prairie vole  ===========
      Lesser Egyptian jerboa  ===========
B D                    Alpaca  -----------
B D                    Baboon  -----------
                  Chinchilla  -----------
B D                Guinea pig  ===========
            Brush-tailed rat  -----------
         Cape elephant shrew  ===========
         Pundamilia nyererei  ===========
                 Zebra mbuna  ===========
       Burton's mouthbreeder  ===========
B D                   Megabat  ===========
  D             Scarlet macaw  ===========
  D              Mallard duck  ===========
B D       Medium ground finch  ===========
B D                Budgerigar  ===========
  D           Green seaturtle  ===========
  D       Collared flycatcher  ===========
  D    Spiny softshell turtle  ===========
  D  Chinese softshell turtle  ===========
B D                    Turkey  ===========
B D           Tasmanian devil  ===========
B D                   Wallaby  ===========
B D                 Armadillo  ===========
          Chinese tree shrew  -----------
B D            Naked mole-rat  ===========
B D                     Panda  ===========
B D                       Cow  -----------
         Princess of Burundi  ===========
          Tibetan ground jay  ===========
B D              Nile tilapia  ===========
B D                 Tetraodon  ===========
  D            Painted turtle  ===========
B D                   Chicken  ===========
B D        American alligator  ===========
          Southern platyfish  ===========
B D                Coelacanth  ===========
B D               Stickleback  ===========
  D    White-throated sparrow  ===========
  D          Peregrine falcon  ===========
B D               Zebra finch  ===========
  D              Saker falcon  ===========
B D                    Lizard  ===========
  D               Rock pigeon  ===========
B D                    Medaka  ===========
B D             X. tropicalis  ===========
            Cape golden mole  ===========
B D                   Opossum  ===========
B D                   Gorilla  -----------
                Weddell seal  ===========
               Big brown bat  ===========
B D                  Squirrel  ===========
B D                  Microbat  -----------
        David's myotis (bat)  ===========
B D                   Ferret   -----------
B D                       Dog  ===========
B D                     Horse  ===========
              Bactrian camel  -----------
B D              Green monkey  -----------
B D       Crab-eating macaque  -----------
B D                    Rhesus  ===========
B D                    Gibbon  -----------

Inserts between block 19 and 20 in window
                Killer whale 9bp
            Tibetan antelope 25bp
B D                    Sheep 25bp
               Domestic goat 25bp
B D         White rhinoceros 5bp
B D                      Cat 2bp
              Pacific walrus 94bp
B D                  Manatee 382bp

Alignment block 20 of 357 in window, 41839964 - 41839965, 2 bps 
B D                     Human  tt
B D                     Chimp  tt
B D                 Orangutan  tt
B D                    Gibbon  ct
B D                  Marmoset  tc
B D           Squirrel monkey  tt
B D                  Bushbaby  ct
B D                    Alpaca  tt
               Bactrian camel  tt
                 Killer whale  -c
B D                       Cow  tt
B D                       Cat  tt
             Black flying-fox  tt
B D                  Hedgehog  tc
B D                     Shrew  ==
B D                      Pika  --
             Star-nosed mole  --
B D                    Tenrec  --
B D                       Rat  ==
B D                     Mouse  ==
              Golden hamster  --
B D           Chinese hamster  ==
                Prairie vole  ==
      Lesser Egyptian jerboa  ==
B D                    Baboon  --
                  Chinchilla  --
B D                Guinea pig  ==
            Brush-tailed rat  --
         Cape elephant shrew  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
B D                   Megabat  ==
  D             Scarlet macaw  ==
  D              Mallard duck  ==
B D       Medium ground finch  ==
B D                Budgerigar  ==
  D           Green seaturtle  ==
  D       Collared flycatcher  ==
  D    Spiny softshell turtle  ==
  D  Chinese softshell turtle  ==
B D                    Turkey  ==
                    Aardvark  --
B D           Tasmanian devil  ==
B D                   Wallaby  ==
B D                 Armadillo  ==
          Chinese tree shrew  --
B D            Naked mole-rat  ==
B D                  Elephant  --
B D                    Rabbit  --
B D                   Manatee  ==
B D                     Panda  ==
               Domestic goat  ==
B D                     Sheep  ==
            Tibetan antelope  ==
         Princess of Burundi  ==
          Tibetan ground jay  ==
B D              Nile tilapia  ==
B D                 Tetraodon  ==
  D            Painted turtle  ==
B D                   Chicken  ==
B D        American alligator  ==
          Southern platyfish  ==
B D                Coelacanth  ==
B D               Stickleback  ==
  D    White-throated sparrow  ==
  D          Peregrine falcon  ==
B D               Zebra finch  ==
  D              Saker falcon  ==
B D                    Lizard  ==
  D               Rock pigeon  ==
B D                    Medaka  ==
B D             X. tropicalis  ==
            Cape golden mole  ==
B D                   Opossum  ==
B D                   Gorilla  --
                Weddell seal  ==
              Pacific walrus  ==
               Big brown bat  ==
B D                  Squirrel  ==
B D                  Microbat  --
        David's myotis (bat)  ==
B D                   Ferret   --
B D                       Dog  ==
B D          White rhinoceros  ==
B D                     Horse  ==
B D              Green monkey  --
B D       Crab-eating macaque  --
B D                    Rhesus  ==

Inserts between block 20 and 21 in window
            Black flying-fox 28bp

Alignment block 21 of 357 in window, 41839966 - 41839966, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                 Orangutan  t
B D                    Gibbon  t
B D                  Marmoset  t
B D           Squirrel monkey  t
B D                  Bushbaby  g
B D                    Alpaca  t
               Bactrian camel  t
                 Killer whale  c
B D                       Cow  t
B D                       Cat  t
B D                  Hedgehog  t
B D                     Shrew  =
B D                      Pika  -
             Star-nosed mole  -
B D                    Tenrec  -
B D                       Rat  =
B D                     Mouse  =
              Golden hamster  -
B D           Chinese hamster  =
                Prairie vole  =
      Lesser Egyptian jerboa  =
B D                    Baboon  -
                  Chinchilla  -
B D                Guinea pig  =
            Brush-tailed rat  -
         Cape elephant shrew  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
B D                   Megabat  =
  D             Scarlet macaw  =
  D              Mallard duck  =
B D       Medium ground finch  =
B D                Budgerigar  =
  D           Green seaturtle  =
  D       Collared flycatcher  =
  D    Spiny softshell turtle  =
  D  Chinese softshell turtle  =
B D                    Turkey  =
                    Aardvark  -
B D           Tasmanian devil  =
B D                   Wallaby  =
B D                 Armadillo  =
          Chinese tree shrew  -
B D            Naked mole-rat  =
B D                  Elephant  -
B D                    Rabbit  -
B D                   Manatee  =
B D                     Panda  =
               Domestic goat  =
B D                     Sheep  =
            Tibetan antelope  =
         Princess of Burundi  =
          Tibetan ground jay  =
B D              Nile tilapia  =
B D                 Tetraodon  =
  D            Painted turtle  =
B D                   Chicken  =
B D        American alligator  =
          Southern platyfish  =
B D                Coelacanth  =
B D               Stickleback  =
  D    White-throated sparrow  =
  D          Peregrine falcon  =
B D               Zebra finch  =
  D              Saker falcon  =
B D                    Lizard  =
  D               Rock pigeon  =
B D                    Medaka  =
B D             X. tropicalis  =
            Cape golden mole  =
B D                   Opossum  =
B D                   Gorilla  -
                Weddell seal  =
              Pacific walrus  =
               Big brown bat  =
B D                  Squirrel  =
B D                  Microbat  -
        David's myotis (bat)  =
            Black flying-fox  =
B D                   Ferret   -
B D                       Dog  =
B D          White rhinoceros  =
B D                     Horse  =
B D              Green monkey  -
B D       Crab-eating macaque  -
B D                    Rhesus  =

Inserts between block 21 and 22 in window
                Killer whale 1bp
B D                      Cow 28bp

Alignment block 22 of 357 in window, 41839967 - 41839967, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                 Orangutan  t
B D                    Gibbon  t
B D                  Marmoset  a
B D           Squirrel monkey  t
B D                  Bushbaby  t
B D                       Cat  t
B D                  Hedgehog  t
B D                     Shrew  =
B D                      Pika  -
             Star-nosed mole  -
B D                    Tenrec  -
B D                       Rat  =
B D                     Mouse  =
              Golden hamster  -
B D           Chinese hamster  =
                Prairie vole  =
      Lesser Egyptian jerboa  =
B D                    Alpaca  -
B D                    Baboon  -
                  Chinchilla  -
B D                Guinea pig  =
            Brush-tailed rat  -
         Cape elephant shrew  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
B D                   Megabat  =
  D             Scarlet macaw  =
  D              Mallard duck  =
B D       Medium ground finch  =
B D                Budgerigar  =
  D           Green seaturtle  =
  D       Collared flycatcher  =
  D    Spiny softshell turtle  =
  D  Chinese softshell turtle  =
B D                    Turkey  =
                    Aardvark  -
B D           Tasmanian devil  =
B D                   Wallaby  =
B D                 Armadillo  =
          Chinese tree shrew  -
B D            Naked mole-rat  =
B D                  Elephant  -
B D                    Rabbit  -
B D                   Manatee  =
B D                     Panda  =
               Domestic goat  =
B D                     Sheep  =
B D                       Cow  =
            Tibetan antelope  =
         Princess of Burundi  =
          Tibetan ground jay  =
B D              Nile tilapia  =
B D                 Tetraodon  =
  D            Painted turtle  =
B D                   Chicken  =
B D        American alligator  =
          Southern platyfish  =
B D                Coelacanth  =
B D               Stickleback  =
  D    White-throated sparrow  =
  D          Peregrine falcon  =
B D               Zebra finch  =
  D              Saker falcon  =
B D                    Lizard  =
  D               Rock pigeon  =
B D                    Medaka  =
B D             X. tropicalis  =
            Cape golden mole  =
B D                   Opossum  =
B D                   Gorilla  -
                Weddell seal  =
              Pacific walrus  =
               Big brown bat  =
B D                  Squirrel  =
B D                  Microbat  -
        David's myotis (bat)  =
            Black flying-fox  =
B D                   Ferret   -
B D                       Dog  =
B D          White rhinoceros  =
B D                     Horse  =
                Killer whale  =
              Bactrian camel  -
B D              Green monkey  -
B D       Crab-eating macaque  -
B D                    Rhesus  =

Inserts between block 22 and 23 in window
B D                 Bushbaby 55bp

Alignment block 23 of 357 in window, 41839968 - 41839968, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                 Orangutan  t
B D                    Gibbon  t
B D                  Marmoset  t
B D           Squirrel monkey  t
               Golden hamster  t
B D                    Rabbit  t
B D                    Alpaca  t
               Bactrian camel  t
B D                       Cat  t
B D                  Hedgehog  t
B D                     Shrew  =
B D                      Pika  -
             Star-nosed mole  -
B D                    Tenrec  -
B D                       Rat  =
B D                     Mouse  =
B D           Chinese hamster  =
                Prairie vole  =
      Lesser Egyptian jerboa  =
B D                    Baboon  -
                  Chinchilla  -
B D                Guinea pig  =
            Brush-tailed rat  -
         Cape elephant shrew  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
B D                   Megabat  =
  D             Scarlet macaw  =
  D              Mallard duck  =
B D       Medium ground finch  =
B D                Budgerigar  =
  D           Green seaturtle  =
  D       Collared flycatcher  =
  D    Spiny softshell turtle  =
  D  Chinese softshell turtle  =
B D                    Turkey  =
                    Aardvark  -
B D           Tasmanian devil  =
B D                   Wallaby  =
B D                 Armadillo  =
          Chinese tree shrew  -
B D            Naked mole-rat  =
B D                  Elephant  -
B D                   Manatee  =
B D                     Panda  =
               Domestic goat  =
B D                     Sheep  =
B D                       Cow  =
            Tibetan antelope  =
         Princess of Burundi  =
          Tibetan ground jay  =
B D              Nile tilapia  =
B D                 Tetraodon  =
  D            Painted turtle  =
B D                   Chicken  =
B D        American alligator  =
          Southern platyfish  =
B D                Coelacanth  =
B D               Stickleback  =
  D    White-throated sparrow  =
  D          Peregrine falcon  =
B D               Zebra finch  =
  D              Saker falcon  =
B D                    Lizard  =
  D               Rock pigeon  =
B D                    Medaka  =
B D             X. tropicalis  =
            Cape golden mole  =
B D                   Opossum  =
B D                   Gorilla  -
                Weddell seal  =
              Pacific walrus  =
               Big brown bat  =
B D                  Bushbaby  =
B D                  Squirrel  =
B D                  Microbat  -
        David's myotis (bat)  =
            Black flying-fox  =
B D                   Ferret   -
B D                       Dog  =
B D          White rhinoceros  =
B D                     Horse  =
                Killer whale  =
B D              Green monkey  -
B D       Crab-eating macaque  -
B D                    Rhesus  =

Inserts between block 23 and 24 in window
B D                      Cat 262bp

Alignment block 24 of 357 in window, 41839969 - 41839972, 4 bps 
B D                     Human  tttt
B D                     Chimp  tttt
B D                   Gorilla  --tt
B D                 Orangutan  tttt
B D                    Gibbon  tttt
B D                  Marmoset  tttt
B D           Squirrel monkey  tttt
               Golden hamster  tttt
B D                    Rabbit  attt
B D                    Alpaca  --tt
               Bactrian camel  --tt
                 Killer whale  --ta
B D                  Hedgehog  ---t
B D                     Shrew  ====
B D                      Pika  ----
             Star-nosed mole  ----
B D                    Tenrec  ----
B D                       Rat  ====
B D                     Mouse  ====
B D           Chinese hamster  ====
                Prairie vole  ====
      Lesser Egyptian jerboa  ====
B D                    Baboon  ----
                  Chinchilla  ----
B D                Guinea pig  ====
            Brush-tailed rat  ----
         Cape elephant shrew  ====
         Pundamilia nyererei  ====
                 Zebra mbuna  ====
       Burton's mouthbreeder  ====
B D                   Megabat  ====
  D             Scarlet macaw  ====
  D              Mallard duck  ====
B D       Medium ground finch  ====
B D                Budgerigar  ====
  D           Green seaturtle  ====
  D       Collared flycatcher  ====
  D    Spiny softshell turtle  ====
  D  Chinese softshell turtle  ====
B D                    Turkey  ====
                    Aardvark  ----
B D           Tasmanian devil  ====
B D                   Wallaby  ====
B D                 Armadillo  ====
          Chinese tree shrew  ----
B D            Naked mole-rat  ====
B D                  Elephant  ----
B D                   Manatee  ====
B D                     Panda  ====
               Domestic goat  ====
B D                     Sheep  ====
B D                       Cow  ====
            Tibetan antelope  ====
         Princess of Burundi  ====
          Tibetan ground jay  ====
B D              Nile tilapia  ====
B D                 Tetraodon  ====
  D            Painted turtle  ====
B D                   Chicken  ====
B D        American alligator  ====
          Southern platyfish  ====
B D                Coelacanth  ====
B D               Stickleback  ====
  D    White-throated sparrow  ====
  D          Peregrine falcon  ====
B D               Zebra finch  ====
  D              Saker falcon  ====
B D                    Lizard  ====
  D               Rock pigeon  ====
B D                    Medaka  ====
B D             X. tropicalis  ====
            Cape golden mole  ====
B D                   Opossum  ====
                Weddell seal  ====
              Pacific walrus  ====
               Big brown bat  ====
B D                       Cat  ====
B D                  Bushbaby  ====
B D                  Squirrel  ====
B D                  Microbat  ----
        David's myotis (bat)  ====
            Black flying-fox  ====
B D                   Ferret   ----
B D                       Dog  ====
B D          White rhinoceros  ====
B D                     Horse  ====
B D              Green monkey  ----
B D       Crab-eating macaque  ----
B D                    Rhesus  ====

Inserts between block 24 and 25 in window
B D                   Alpaca 2bp
              Bactrian camel 2bp
                Killer whale 2bp
B D                 Hedgehog 3bp

Alignment block 25 of 357 in window, 41839973 - 41839973, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                   Gorilla  t
B D                 Orangutan  t
B D                    Gibbon  t
B D                  Marmoset  t
B D           Squirrel monkey  t
               Golden hamster  t
B D                    Rabbit  t
B D                    Alpaca  t
               Bactrian camel  t
                 Killer whale  t
B D                  Hedgehog  t
B D                     Shrew  =
B D                      Pika  -
             Star-nosed mole  -
B D                    Tenrec  -
B D                       Rat  =
B D                     Mouse  =
B D           Chinese hamster  =
                Prairie vole  =
      Lesser Egyptian jerboa  =
B D                    Baboon  -
                  Chinchilla  -
B D                Guinea pig  =
            Brush-tailed rat  -
         Cape elephant shrew  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
B D                   Megabat  =
  D             Scarlet macaw  =
  D              Mallard duck  =
B D       Medium ground finch  =
B D                Budgerigar  =
  D           Green seaturtle  =
  D       Collared flycatcher  =
  D    Spiny softshell turtle  =
  D  Chinese softshell turtle  =
B D                    Turkey  =
                    Aardvark  -
B D           Tasmanian devil  =
B D                   Wallaby  =
B D                 Armadillo  =
          Chinese tree shrew  -
B D            Naked mole-rat  =
B D                  Elephant  -
B D                   Manatee  =
B D                     Panda  =
               Domestic goat  =
B D                     Sheep  =
B D                       Cow  =
            Tibetan antelope  =
         Princess of Burundi  =
          Tibetan ground jay  =
B D              Nile tilapia  =
B D                 Tetraodon  =
  D            Painted turtle  =
B D                   Chicken  =
B D        American alligator  =
          Southern platyfish  =
B D                Coelacanth  =
B D               Stickleback  =
  D    White-throated sparrow  =
  D          Peregrine falcon  =
B D               Zebra finch  =
  D              Saker falcon  =
B D                    Lizard  =
  D               Rock pigeon  =
B D                    Medaka  =
B D             X. tropicalis  =
            Cape golden mole  =
B D                   Opossum  =
                Weddell seal  =
              Pacific walrus  =
               Big brown bat  =
B D                       Cat  =
B D                  Bushbaby  =
B D                  Squirrel  =
B D                  Microbat  -
        David's myotis (bat)  =
            Black flying-fox  =
B D                   Ferret   -
B D                       Dog  =
B D          White rhinoceros  =
B D                     Horse  =
B D              Green monkey  -
B D       Crab-eating macaque  -
B D                    Rhesus  =

Inserts between block 25 and 26 in window
B D                   Alpaca 29bp
              Bactrian camel 29bp
                Killer whale 14bp

Alignment block 26 of 357 in window, 41839974 - 41839976, 3 bps 
B D                     Human  ttt
B D                     Chimp  ttt
B D                   Gorilla  ttt
B D                 Orangutan  ttt
B D                    Gibbon  ttt
B D                  Marmoset  ttt
B D           Squirrel monkey  ttt
               Golden hamster  ttc
B D                    Rabbit  atc
                 Killer whale  tct
B D                     Shrew  ===
B D                  Hedgehog  ---
B D                      Pika  ---
             Star-nosed mole  ---
B D                    Tenrec  ---
B D                       Rat  ===
B D                     Mouse  ===
B D           Chinese hamster  ===
                Prairie vole  ===
      Lesser Egyptian jerboa  ===
B D                    Alpaca  ===
B D                    Baboon  ---
                  Chinchilla  ---
B D                Guinea pig  ===
            Brush-tailed rat  ---
         Cape elephant shrew  ===
         Pundamilia nyererei  ===
                 Zebra mbuna  ===
       Burton's mouthbreeder  ===
B D                   Megabat  ===
  D             Scarlet macaw  ===
  D              Mallard duck  ===
B D       Medium ground finch  ===
B D                Budgerigar  ===
  D           Green seaturtle  ===
  D       Collared flycatcher  ===
  D    Spiny softshell turtle  ===
  D  Chinese softshell turtle  ===
B D                    Turkey  ===
                    Aardvark  ---
B D           Tasmanian devil  ===
B D                   Wallaby  ===
B D                 Armadillo  ===
          Chinese tree shrew  ---
B D            Naked mole-rat  ===
B D                  Elephant  ---
B D                   Manatee  ===
B D                     Panda  ===
               Domestic goat  ===
B D                     Sheep  ===
B D                       Cow  ===
            Tibetan antelope  ===
         Princess of Burundi  ===
          Tibetan ground jay  ===
B D              Nile tilapia  ===
B D                 Tetraodon  ===
  D            Painted turtle  ===
B D                   Chicken  ===
B D        American alligator  ===
          Southern platyfish  ===
B D                Coelacanth  ===
B D               Stickleback  ===
  D    White-throated sparrow  ===
  D          Peregrine falcon  ===
B D               Zebra finch  ===
  D              Saker falcon  ===
B D                    Lizard  ===
  D               Rock pigeon  ===
B D                    Medaka  ===
B D             X. tropicalis  ===
            Cape golden mole  ===
B D                   Opossum  ===
                Weddell seal  ===
              Pacific walrus  ===
               Big brown bat  ===
B D                       Cat  ===
B D                  Bushbaby  ===
B D                  Squirrel  ===
B D                  Microbat  ---
        David's myotis (bat)  ===
            Black flying-fox  ===
B D                   Ferret   ---
B D                       Dog  ===
B D          White rhinoceros  ===
B D                     Horse  ===
              Bactrian camel  ===
B D              Green monkey  ---
B D       Crab-eating macaque  ---
B D                    Rhesus  ===

Alignment block 27 of 357 in window, 41839977 - 41839982, 6 bps 
B D                     Human  tgagac
B D                     Chimp  tgagac
B D                   Gorilla  tgagac
B D                 Orangutan  tgagat
B D                    Gibbon  tgagac
B D                  Marmoset  tgagat
B D           Squirrel monkey  tgagac
               Golden hamster  ttggag
B D                    Rabbit  tgaaag
                 Killer whale  tgtgac
B D                  Hedgehog  ----ac
B D                     Shrew  ======
B D                      Pika  ------
             Star-nosed mole  ------
B D                    Tenrec  ------
B D                       Rat  ======
B D                     Mouse  ======
B D           Chinese hamster  ======
                Prairie vole  ======
      Lesser Egyptian jerboa  ======
B D                    Alpaca  ======
B D                    Baboon  ------
                  Chinchilla  ------
B D                Guinea pig  ======
            Brush-tailed rat  ------
         Cape elephant shrew  ======
         Pundamilia nyererei  ======
                 Zebra mbuna  ======
       Burton's mouthbreeder  ======
B D                   Megabat  ======
  D             Scarlet macaw  ======
  D              Mallard duck  ======
B D       Medium ground finch  ======
B D                Budgerigar  ======
  D           Green seaturtle  ======
  D       Collared flycatcher  ======
  D    Spiny softshell turtle  ======
  D  Chinese softshell turtle  ======
B D                    Turkey  ======
                    Aardvark  ------
B D           Tasmanian devil  ======
B D                   Wallaby  ======
B D                 Armadillo  ======
          Chinese tree shrew  ------
B D            Naked mole-rat  ======
B D                  Elephant  ------
B D                   Manatee  ======
B D                     Panda  ======
               Domestic goat  ======
B D                     Sheep  ======
B D                       Cow  ======
            Tibetan antelope  ======
         Princess of Burundi  ======
          Tibetan ground jay  ======
B D              Nile tilapia  ======
B D                 Tetraodon  ======
  D            Painted turtle  ======
B D                   Chicken  ======
B D        American alligator  ======
          Southern platyfish  ======
B D                Coelacanth  ======
B D               Stickleback  ======
  D    White-throated sparrow  ======
  D          Peregrine falcon  ======
B D               Zebra finch  ======
  D              Saker falcon  ======
B D                    Lizard  ======
  D               Rock pigeon  ======
B D                    Medaka  ======
B D             X. tropicalis  ======
            Cape golden mole  ======
B D                   Opossum  ======
                Weddell seal  ======
              Pacific walrus  ======
               Big brown bat  ======
B D                       Cat  ======
B D                  Bushbaby  ======
B D                  Squirrel  ======
B D                  Microbat  ------
        David's myotis (bat)  ======
            Black flying-fox  ======
B D                   Ferret   ------
B D                       Dog  ======
B D          White rhinoceros  ======
B D                     Horse  ======
              Bactrian camel  ======
B D              Green monkey  ------
B D       Crab-eating macaque  ------
B D                    Rhesus  ======

Inserts between block 27 and 28 in window
              Golden hamster 806bp
B D                   Rabbit 6bp
                Killer whale 1bp
B D                 Hedgehog 1bp

Alignment block 28 of 357 in window, 41839983 - 41839996, 14 bps 
B D                     Human  ggagtctcactc-tg
B D                     Chimp  ggagtctcactc-tg
B D                   Gorilla  ggagt----ctc-tg
B D                 Orangutan  ggagtctcactc-tg
B D                    Gibbon  ggagtctcactc-tg
B D                  Marmoset  ggagtcttgctc-tg
B D           Squirrel monkey  ggagttttgctcttg
B D                    Rabbit  aga---ttgatc-ta
                 Killer whale  gaaactcagttt-g-
B D                  Hedgehog  agagcactgctc-t-
B D                     Shrew  ===============
B D                      Pika  ---------------
             Star-nosed mole  ---------------
B D                    Tenrec  ---------------
B D                       Rat  ===============
B D                     Mouse  ===============
              Golden hamster  ===============
B D           Chinese hamster  ===============
                Prairie vole  ===============
      Lesser Egyptian jerboa  ===============
B D                    Alpaca  ===============
B D                    Baboon  ---------------
                  Chinchilla  ---------------
B D                Guinea pig  ===============
            Brush-tailed rat  ---------------
         Cape elephant shrew  ===============
         Pundamilia nyererei  ===============
                 Zebra mbuna  ===============
       Burton's mouthbreeder  ===============
B D                   Megabat  ===============
  D             Scarlet macaw  ===============
  D              Mallard duck  ===============
B D       Medium ground finch  ===============
B D                Budgerigar  ===============
  D           Green seaturtle  ===============
  D       Collared flycatcher  ===============
  D    Spiny softshell turtle  ===============
  D  Chinese softshell turtle  ===============
B D                    Turkey  ===============
                    Aardvark  ---------------
B D           Tasmanian devil  ===============
B D                   Wallaby  ===============
B D                 Armadillo  ===============
          Chinese tree shrew  ---------------
B D            Naked mole-rat  ===============
B D                  Elephant  ---------------
B D                   Manatee  ===============
B D                     Panda  ===============
               Domestic goat  ===============
B D                     Sheep  ===============
B D                       Cow  ===============
            Tibetan antelope  ===============
         Princess of Burundi  ===============
          Tibetan ground jay  ===============
B D              Nile tilapia  ===============
B D                 Tetraodon  ===============
  D            Painted turtle  ===============
B D                   Chicken  ===============
B D        American alligator  ===============
          Southern platyfish  ===============
B D                Coelacanth  ===============
B D               Stickleback  ===============
  D    White-throated sparrow  ===============
  D          Peregrine falcon  ===============
B D               Zebra finch  ===============
  D              Saker falcon  ===============
B D                    Lizard  ===============
  D               Rock pigeon  ===============
B D                    Medaka  ===============
B D             X. tropicalis  ===============
            Cape golden mole  ===============
B D                   Opossum  ===============
                Weddell seal  ===============
              Pacific walrus  ===============
               Big brown bat  ===============
B D                       Cat  ===============
B D                  Bushbaby  ===============
B D                  Squirrel  ===============
B D                  Microbat  ---------------
        David's myotis (bat)  ===============
            Black flying-fox  ===============
B D                   Ferret   ---------------
B D                       Dog  ===============
B D          White rhinoceros  ===============
B D                     Horse  ===============
              Bactrian camel  ===============
B D              Green monkey  ---------------
B D       Crab-eating macaque  ---------------
B D                    Rhesus  ===============

Inserts between block 28 and 29 in window
                Killer whale 264bp
B D                 Hedgehog 7bp

Alignment block 29 of 357 in window, 41839997 - 41840047, 51 bps 
B D                     Human  tcgcccag------------------gctgaagtg-------cagtggcgcggtctcagctcactgcagc
B D                     Chimp  tcgcccag------------------gctgaagtg-------cagtggcgcggtctcagctcactgcagc
B D                   Gorilla  ttgcccag------------------gctgaagtg-------cagtggcgcggtctcagctcactgcagc
B D                 Orangutan  tcgcccag------------------gctggaatg-------cagtggcgtggtctcagctcactgcatc
B D                    Gibbon  tcgcccag------------------gctggaatg-------cagtggtgcagtctcagctcactgcatc
B D                  Marmoset  ttg-ccag------------------gctggagtg-------cagtggcgcaacctcagcccactgcaac
B D           Squirrel monkey  ttacccag------------------gctggagtg-------caatggcgcgatctcggctcaccgcaac
             Brush-tailed rat  --------------------------gccgatgta-----------------------------------
B D                    Rabbit  ctctctactgattcaattcccaaatggctgaagtggccagggcag-ggcaaggccaaaacc---------
B D                  Hedgehog  --gtttat------------------ggtga--tg-------caggggatggaaccagggactttggaac
B D                    Tenrec  ---------------------------------------------------tgaaccagca--ccacatc
                     Aardvark  ---------------------------------------------cgtaactaattcagcc--ctgaagc
B D                     Shrew  ======================================================================
B D                      Pika  ----------------------------------------------------------------------
             Star-nosed mole  ----------------------------------------------------------------------
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
              Golden hamster  ======================================================================
B D           Chinese hamster  ======================================================================
                Prairie vole  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
B D                    Alpaca  ======================================================================
B D                    Baboon  ----------------------------------------------------------------------
                  Chinchilla  ----------------------------------------------------------------------
B D                Guinea pig  ======================================================================
         Cape elephant shrew  ======================================================================
         Pundamilia nyererei  ======================================================================
                 Zebra mbuna  ======================================================================
       Burton's mouthbreeder  ======================================================================
B D                   Megabat  ======================================================================
  D             Scarlet macaw  ======================================================================
  D              Mallard duck  ======================================================================
B D       Medium ground finch  ======================================================================
B D                Budgerigar  ======================================================================
  D           Green seaturtle  ======================================================================
  D       Collared flycatcher  ======================================================================
  D    Spiny softshell turtle  ======================================================================
  D  Chinese softshell turtle  ======================================================================
B D                    Turkey  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                   Wallaby  ======================================================================
B D                 Armadillo  ======================================================================
          Chinese tree shrew  ----------------------------------------------------------------------
B D            Naked mole-rat  ======================================================================
B D                  Elephant  ----------------------------------------------------------------------
B D                   Manatee  ======================================================================
B D                     Panda  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
B D                       Cow  ======================================================================
            Tibetan antelope  ======================================================================
         Princess of Burundi  ======================================================================
          Tibetan ground jay  ======================================================================
B D              Nile tilapia  ======================================================================
B D                 Tetraodon  ======================================================================
  D            Painted turtle  ======================================================================
B D                   Chicken  ======================================================================
B D        American alligator  ======================================================================
          Southern platyfish  ======================================================================
B D                Coelacanth  ======================================================================
B D               Stickleback  ======================================================================
  D    White-throated sparrow  ======================================================================
  D          Peregrine falcon  ======================================================================
B D               Zebra finch  ======================================================================
  D              Saker falcon  ======================================================================
B D                    Lizard  ======================================================================
  D               Rock pigeon  ======================================================================
B D                    Medaka  ======================================================================
B D             X. tropicalis  ======================================================================
            Cape golden mole  ======================================================================
B D                   Opossum  ======================================================================
                Weddell seal  ======================================================================
              Pacific walrus  ======================================================================
               Big brown bat  ======================================================================
B D                       Cat  ======================================================================
B D                  Bushbaby  ======================================================================
B D                  Squirrel  ======================================================================
B D                  Microbat  ----------------------------------------------------------------------
        David's myotis (bat)  ======================================================================
            Black flying-fox  ======================================================================
B D                   Ferret   ----------------------------------------------------------------------
B D                       Dog  ======================================================================
B D          White rhinoceros  ======================================================================
B D                     Horse  ======================================================================
                Killer whale  ======================================================================
              Bactrian camel  ======================================================================
B D              Green monkey  ----------------------------------------------------------------------
B D       Crab-eating macaque  ----------------------------------------------------------------------
B D                    Rhesus  ======================================================================

                        Human  ctctgc
                        Chimp  ctctgc
                      Gorilla  ctctgc
                    Orangutan  ctctgc
                       Gibbon  ctctgc
                     Marmoset  ctccac
              Squirrel monkey  ctccgt
             Brush-tailed rat  ------
                       Rabbit  ------
                     Hedgehog  ctcagg
                       Tenrec  ttgcaa
                     Aardvark  ttgtga
                        Shrew  ======
                         Pika  ------
              Star-nosed mole  ------
                          Rat  ======
                        Mouse  ======
               Golden hamster  ======
              Chinese hamster  ======
                 Prairie vole  ======
       Lesser Egyptian jerboa  ======
                       Alpaca  ======
                       Baboon  ------
                   Chinchilla  ------
                   Guinea pig  ======
          Cape elephant shrew  ======
          Pundamilia nyererei  ======
                  Zebra mbuna  ======
        Burton's mouthbreeder  ======
                      Megabat  ======
                Scarlet macaw  ======
                 Mallard duck  ======
          Medium ground finch  ======
                   Budgerigar  ======
              Green seaturtle  ======
          Collared flycatcher  ======
       Spiny softshell turtle  ======
     Chinese softshell turtle  ======
                       Turkey  ======
              Tasmanian devil  ======
                      Wallaby  ======
                    Armadillo  ======
           Chinese tree shrew  ------
               Naked mole-rat  ======
                     Elephant  ------
                      Manatee  ======
                        Panda  ======
                Domestic goat  ======
                        Sheep  ======
                          Cow  ======
             Tibetan antelope  ======
          Princess of Burundi  ======
           Tibetan ground jay  ======
                 Nile tilapia  ======
                    Tetraodon  ======
               Painted turtle  ======
                      Chicken  ======
           American alligator  ======
           Southern platyfish  ======
                   Coelacanth  ======
                  Stickleback  ======
       White-throated sparrow  ======
             Peregrine falcon  ======
                  Zebra finch  ======
                 Saker falcon  ======
                       Lizard  ======
                  Rock pigeon  ======
                       Medaka  ======
                X. tropicalis  ======
             Cape golden mole  ======
                      Opossum  ======
                 Weddell seal  ======
               Pacific walrus  ======
                Big brown bat  ======
                          Cat  ======
                     Bushbaby  ======
                     Squirrel  ======
                     Microbat  ------
         David's myotis (bat)  ======
             Black flying-fox  ======
                      Ferret   ------
                          Dog  ======
             White rhinoceros  ======
                        Horse  ======
                 Killer whale  ======
               Bactrian camel  ======
                 Green monkey  ------
          Crab-eating macaque  ------
                       Rhesus  ======

Inserts between block 29 and 30 in window
B D                 Hedgehog 9bp

Alignment block 30 of 357 in window, 41840048 - 41840083, 36 bps 
B D                     Human  ctcctgggtt----caggcagttct----ctgcctcagcctccc
B D                     Chimp  ctcctgggtt----caggcagttct----ctgcctcagcctccc
B D                   Gorilla  ctcctgggtt----caggcaattct----ctgcctcagcctccc
B D                 Orangutan  ctcctgggtt----caggcagttct----ctgcctcagcctccc
B D                    Gibbon  ctcctgggtt----aaggcaattct----ctgcctcagcctccc
B D                  Marmoset  ctcttgggtt----gaagcaattcc---cctgcctcagccttcc
B D           Squirrel monkey  ctcctgggtt----caggcaattct---cctgcctcagcctcct
             Brush-tailed rat  ------------------------------tgtttgtgtctct-
B D                    Rabbit  -----aggag----caggaa---ct----ccgtctgggtctccc
B D                   Ferret   ctcttgggtt----------------------------------
B D                  Hedgehog  ctctttgcatagcc------------------------------
B D                    Tenrec  cctctcacta----tgatga--tca--gcttgttttatct----
                     Aardvark  ccgcttgata----tgaaaagttcactccctgttgcgccc----
B D                     Shrew  ============================================
B D                      Pika  --------------------------------------------
             Star-nosed mole  --------------------------------------------
B D                       Rat  ============================================
B D                     Mouse  ============================================
              Golden hamster  ============================================
B D           Chinese hamster  ============================================
                Prairie vole  ============================================
      Lesser Egyptian jerboa  ============================================
B D                    Alpaca  ============================================
B D                    Baboon  --------------------------------------------
                  Chinchilla  --------------------------------------------
B D                Guinea pig  ============================================
         Cape elephant shrew  ============================================
         Pundamilia nyererei  ============================================
                 Zebra mbuna  ============================================
       Burton's mouthbreeder  ============================================
B D                   Megabat  ============================================
  D             Scarlet macaw  ============================================
  D              Mallard duck  ============================================
B D       Medium ground finch  ============================================
B D                Budgerigar  ============================================
  D           Green seaturtle  ============================================
  D       Collared flycatcher  ============================================
  D    Spiny softshell turtle  ============================================
  D  Chinese softshell turtle  ============================================
B D                    Turkey  ============================================
B D           Tasmanian devil  ============================================
B D                   Wallaby  ============================================
B D                 Armadillo  ============================================
          Chinese tree shrew  --------------------------------------------
B D            Naked mole-rat  ============================================
B D                  Elephant  --------------------------------------------
B D                   Manatee  ============================================
B D                     Panda  ============================================
               Domestic goat  ============================================
B D                     Sheep  ============================================
B D                       Cow  ============================================
            Tibetan antelope  ============================================
         Princess of Burundi  ============================================
          Tibetan ground jay  ============================================
B D              Nile tilapia  ============================================
B D                 Tetraodon  ============================================
  D            Painted turtle  ============================================
B D                   Chicken  ============================================
B D        American alligator  ============================================
          Southern platyfish  ============================================
B D                Coelacanth  ============================================
B D               Stickleback  ============================================
  D    White-throated sparrow  ============================================
  D          Peregrine falcon  ============================================
B D               Zebra finch  ============================================
  D              Saker falcon  ============================================
B D                    Lizard  ============================================
  D               Rock pigeon  ============================================
B D                    Medaka  ============================================
B D             X. tropicalis  ============================================
            Cape golden mole  ============================================
B D                   Opossum  ============================================
                Weddell seal  ============================================
              Pacific walrus  ============================================
               Big brown bat  ============================================
B D                       Cat  ============================================
B D                  Bushbaby  ============================================
B D                  Squirrel  ============================================
B D                  Microbat  --------------------------------------------
        David's myotis (bat)  ============================================
            Black flying-fox  ============================================
B D                       Dog  ============================================
B D          White rhinoceros  ============================================
B D                     Horse  ============================================
                Killer whale  ============================================
              Bactrian camel  ============================================
B D              Green monkey  --------------------------------------------
B D       Crab-eating macaque  --------------------------------------------
B D                    Rhesus  ============================================

Inserts between block 30 and 31 in window
B D                   Tenrec 10bp
                    Aardvark 305bp

Alignment block 31 of 357 in window, 41840084 - 41840088, 5 bps 
B D                     Human  aagta
B D                     Chimp  aagta
B D                   Gorilla  aagta
B D                 Orangutan  aagta
B D                    Gibbon  aagta
B D                  Marmoset  aagta
B D           Squirrel monkey  gagta
             Brush-tailed rat  ---tg
B D                    Rabbit  atgtg
B D                    Tenrec  -gcta
B D                     Shrew  =====
B D                  Hedgehog  -----
B D                      Pika  -----
             Star-nosed mole  -----
B D                       Rat  =====
B D                     Mouse  =====
              Golden hamster  =====
B D           Chinese hamster  =====
                Prairie vole  =====
      Lesser Egyptian jerboa  =====
B D                    Alpaca  =====
B D                    Baboon  -----
                  Chinchilla  -----
B D                Guinea pig  =====
         Cape elephant shrew  =====
         Pundamilia nyererei  =====
                 Zebra mbuna  =====
       Burton's mouthbreeder  =====
B D                   Megabat  =====
  D             Scarlet macaw  =====
  D              Mallard duck  =====
B D       Medium ground finch  =====
B D                Budgerigar  =====
  D           Green seaturtle  =====
  D       Collared flycatcher  =====
  D    Spiny softshell turtle  =====
  D  Chinese softshell turtle  =====
B D                    Turkey  =====
                    Aardvark  =====
B D           Tasmanian devil  =====
B D                   Wallaby  =====
B D                 Armadillo  =====
          Chinese tree shrew  -----
B D            Naked mole-rat  =====
B D                  Elephant  -----
B D                   Manatee  =====
B D                     Panda  =====
               Domestic goat  =====
B D                     Sheep  =====
B D                       Cow  =====
            Tibetan antelope  =====
         Princess of Burundi  =====
          Tibetan ground jay  =====
B D              Nile tilapia  =====
B D                 Tetraodon  =====
  D            Painted turtle  =====
B D                   Chicken  =====
B D        American alligator  =====
          Southern platyfish  =====
B D                Coelacanth  =====
B D               Stickleback  =====
  D    White-throated sparrow  =====
  D          Peregrine falcon  =====
B D               Zebra finch  =====
  D              Saker falcon  =====
B D                    Lizard  =====
  D               Rock pigeon  =====
B D                    Medaka  =====
B D             X. tropicalis  =====
            Cape golden mole  =====
B D                   Opossum  =====
                Weddell seal  =====
              Pacific walrus  =====
               Big brown bat  =====
B D                       Cat  =====
B D                  Bushbaby  =====
B D                  Squirrel  =====
B D                  Microbat  -----
        David's myotis (bat)  =====
            Black flying-fox  =====
B D                   Ferret   -----
B D                       Dog  =====
B D          White rhinoceros  =====
B D                     Horse  =====
                Killer whale  =====
              Bactrian camel  =====
B D              Green monkey  -----
B D       Crab-eating macaque  -----
B D                    Rhesus  =====

Alignment block 32 of 357 in window, 41840089 - 41840089, 1 bps 
B D                     Human  g
B D                     Chimp  g
B D                   Gorilla  g
B D                 Orangutan  g
B D                    Gibbon  g
B D                  Marmoset  g
B D           Squirrel monkey  g
             Brush-tailed rat  g
B D                    Rabbit  g
B D                  Microbat  g
B D                    Tenrec  a
B D                     Shrew  =
B D                  Hedgehog  -
B D                      Pika  -
             Star-nosed mole  -
B D                       Rat  =
B D                     Mouse  =
              Golden hamster  =
B D           Chinese hamster  =
                Prairie vole  =
      Lesser Egyptian jerboa  =
B D                    Alpaca  =
B D                    Baboon  -
                  Chinchilla  -
B D                Guinea pig  =
         Cape elephant shrew  =
         Pundamilia nyererei  =
                 Zebra mbuna  =
       Burton's mouthbreeder  =
B D                   Megabat  =
  D             Scarlet macaw  =
  D              Mallard duck  =
B D       Medium ground finch  =
B D                Budgerigar  =
  D           Green seaturtle  =
  D       Collared flycatcher  =
  D    Spiny softshell turtle  =
  D  Chinese softshell turtle  =
B D                    Turkey  =
                    Aardvark  =
B D           Tasmanian devil  =
B D                   Wallaby  =
B D                 Armadillo  =
          Chinese tree shrew  -
B D            Naked mole-rat  =
B D                  Elephant  -
B D                   Manatee  =
B D                     Panda  =
               Domestic goat  =
B D                     Sheep  =
B D                       Cow  =
            Tibetan antelope  =
         Princess of Burundi  =
          Tibetan ground jay  =
B D              Nile tilapia  =
B D                 Tetraodon  =
  D            Painted turtle  =
B D                   Chicken  =
B D        American alligator  =
          Southern platyfish  =
B D                Coelacanth  =
B D               Stickleback  =
  D    White-throated sparrow  =
  D          Peregrine falcon  =
B D               Zebra finch  =
  D              Saker falcon  =
B D                    Lizard  =
  D               Rock pigeon  =
B D                    Medaka  =
B D             X. tropicalis  =
            Cape golden mole  =
B D                   Opossum  =
                Weddell seal  =
              Pacific walrus  =
               Big brown bat  =
B D                       Cat  =
B D                  Bushbaby  =
B D                  Squirrel  =
        David's myotis (bat)  =
            Black flying-fox  =
B D                   Ferret   -
B D                       Dog  =
B D          White rhinoceros  =
B D                     Horse  =
                Killer whale  =
              Bactrian camel  =
B D              Green monkey  -
B D       Crab-eating macaque  -
B D                    Rhesus  =

Inserts between block 32 and 33 in window
B D                Orangutan 1bp

Alignment block 33 of 357 in window, 41840090 - 41840091, 2 bps 
B D                     Human  ct
B D                     Chimp  ct
B D                   Gorilla  ct
B D                 Orangutan  at
B D                    Gibbon  ct
B D                  Marmoset  ct
B D           Squirrel monkey  ct
             Brush-tailed rat  gt
B D                    Rabbit  gt
B D                  Microbat  ct
B D                     Shrew  ct
B D                    Tenrec  ct
B D                  Hedgehog  --
B D                      Pika  --
             Star-nosed mole  --
B D                       Rat  ==
B D                     Mouse  ==
              Golden hamster  ==
B D           Chinese hamster  ==
                Prairie vole  ==
      Lesser Egyptian jerboa  ==
B D                    Alpaca  ==
B D                    Baboon  --
                  Chinchilla  --
B D                Guinea pig  ==
         Cape elephant shrew  ==
         Pundamilia nyererei  ==
                 Zebra mbuna  ==
       Burton's mouthbreeder  ==
B D                   Megabat  ==
  D             Scarlet macaw  ==
  D              Mallard duck  ==
B D       Medium ground finch  ==
B D                Budgerigar  ==
  D           Green seaturtle  ==
  D       Collared flycatcher  ==
  D    Spiny softshell turtle  ==
  D  Chinese softshell turtle  ==
B D                    Turkey  ==
                    Aardvark  ==
B D           Tasmanian devil  ==
B D                   Wallaby  ==
B D                 Armadillo  ==
          Chinese tree shrew  --
B D            Naked mole-rat  ==
B D                  Elephant  --
B D                   Manatee  ==
B D                     Panda  ==
               Domestic goat  ==
B D                     Sheep  ==
B D                       Cow  ==
            Tibetan antelope  ==
         Princess of Burundi  ==
          Tibetan ground jay  ==
B D              Nile tilapia  ==
B D                 Tetraodon  ==
  D            Painted turtle  ==
B D                   Chicken  ==
B D        American alligator  ==
          Southern platyfish  ==
B D                Coelacanth  ==
B D               Stickleback  ==
  D    White-throated sparrow  ==
  D          Peregrine falcon  ==
B D               Zebra finch  ==
  D              Saker falcon  ==
B D                    Lizard  ==
  D               Rock pigeon  ==
B D                    Medaka  ==
B D             X. tropicalis  ==
            Cape golden mole  ==
B D                   Opossum  ==
                Weddell seal  ==
              Pacific walrus  ==
               Big brown bat  ==
B D                       Cat  ==
B D                  Bushbaby  ==
B D                  Squirrel  ==
        David's myotis (bat)  ==
            Black flying-fox  ==
B D                   Ferret   --
B D                       Dog  ==
B D          White rhinoceros  ==
B D                     Horse  ==
                Killer whale  ==
              Bactrian camel  ==
B D              Green monkey  --
B D       Crab-eating macaque  --
B D                    Rhesus  ==

Alignment block 34 of 357 in window, 41840092 - 41840106, 15 bps 
B D                     Human  gggattataggcacc
B D                     Chimp  gggattataggcacc
B D                   Gorilla  gggattacaggcacc
B D                 Orangutan  gggattacaggcacc
B D                    Gibbon  gagattacaggcacc
B D                  Marmoset  ggaactacaggcatg
B D           Squirrel monkey  gggattacaggcacg
             Brush-tailed rat  ----------agacc
B D                    Rabbit  gg-----caggggcc
B D          White rhinoceros  gggcttatag-----
B D                  Elephant  ----ttcctaggg--
B D                    Tenrec  gttcctcctggaaca
B D                     Shrew  ---------------
B D                  Hedgehog  ---------------
B D                      Pika  ---------------
             Star-nosed mole  ---------------
B D                       Rat  ===============
B D                     Mouse  ===============
              Golden hamster  ===============
B D           Chinese hamster  ===============
                Prairie vole  ===============
      Lesser Egyptian jerboa  ===============
B D                    Alpaca  ===============
B D                    Baboon  ---------------
                  Chinchilla  ---------------
B D                Guinea pig  ===============
         Cape elephant shrew  ===============
         Pundamilia nyererei  ===============
                 Zebra mbuna  ===============
       Burton's mouthbreeder  ===============
B D                   Megabat  ===============
  D             Scarlet macaw  ===============
  D              Mallard duck  ===============
B D       Medium ground finch  ===============
B D                Budgerigar  ===============
  D           Green seaturtle  ===============
  D       Collared flycatcher  ===============
  D    Spiny softshell turtle  ===============
  D  Chinese softshell turtle  ===============
B D                    Turkey  ===============
                    Aardvark  ===============
B D           Tasmanian devil  ===============
B D                   Wallaby  ===============
B D                 Armadillo  ===============
          Chinese tree shrew  ---------------
B D            Naked mole-rat  ===============
B D                   Manatee  ===============
B D                     Panda  ===============
               Domestic goat  ===============
B D                     Sheep  ===============
B D                       Cow  ===============
            Tibetan antelope  ===============
         Princess of Burundi  ===============
          Tibetan ground jay  ===============
B D              Nile tilapia  ===============
B D                 Tetraodon  ===============
  D            Painted turtle  ===============
B D                   Chicken  ===============
B D        American alligator  ===============
          Southern platyfish  ===============
B D                Coelacanth  ===============
B D               Stickleback  ===============
  D    White-throated sparrow  ===============
  D          Peregrine falcon  ===============
B D               Zebra finch  ===============
  D              Saker falcon  ===============
B D                    Lizard  ===============
  D               Rock pigeon  ===============
B D                    Medaka  ===============
B D             X. tropicalis  ===============
            Cape golden mole  ===============
B D                   Opossum  ===============
                Weddell seal  ===============
              Pacific walrus  ===============
               Big brown bat  ===============
B D                       Cat  ===============
B D                  Bushbaby  ===============
B D                  Squirrel  ===============
B D                  Microbat  ---------------
        David's myotis (bat)  ===============
            Black flying-fox  ===============
B D                   Ferret   ---------------
B D                       Dog  ===============
B D                     Horse  ===============
                Killer whale  ===============
              Bactrian camel  ===============
B D              Green monkey  ---------------
B D       Crab-eating macaque  ---------------
B D                    Rhesus  ===============

Inserts between block 34 and 35 in window
B D                   Rabbit 76bp

Alignment block 35 of 357 in window, 418401