Multiz Alignments of 100 Vertebrates
 

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Place cursor over species for alignment detail. Click on 'B' to link to browser for aligned species, click on 'D' to get DNA for aligned species.
Alignment block 1 of 34 in window, 115250713 - 115250718, 6 bps 
B D                     Human  gttctt
B D                     Chimp  gttctt
B D                   Gorilla  gttctt
B D                 Orangutan  gttctt
B D                    Gibbon  gttctt
B D                    Rhesus  gttctt
B D       Crab-eating macaque  gttctt
B D                    Baboon  gttctt
B D              Green monkey  gttctt
B D                  Marmoset  gttctt
           Chinese tree shrew  attctt
B D                  Squirrel  gttctt
       Lesser Egyptian jerboa  attctt
                 Prairie vole  gctctt
B D           Chinese hamster  gttctt
               Golden hamster  gttctt
B D                     Mouse  gttctt
B D                       Rat  gttctt
B D            Naked mole-rat  gttctt
B D                Guinea pig  gttctg
                   Chinchilla  attctg
             Brush-tailed rat  gttctg
B D                    Rabbit  gctact
B D                      Pika  gttatt
         Cape elephant shrew  ======
B D                  Hedgehog  ======
B D                     Shrew  ======
               Domestic goat  ======
B D                     Sheep  ======
B D                       Cow  ======
            Tibetan antelope  ======
               Big brown bat  ======
B D                  Microbat  ======
        David's myotis (bat)  ======
              Bactrian camel  ======
B D                    Alpaca  ======
             Star-nosed mole  ======
B D                     Panda  ======
B D                       Dog  ======
                Killer whale  ======
B D                   Ferret   ======
B D                       Cat  ======
              Pacific walrus  ======
B D                   Manatee  ======
B D                  Elephant  ======
B D                 Armadillo  ======
B D                    Tenrec  ======
B D                  Bushbaby  ======
B D                     Horse  ======
            Black flying-fox  ======
B D          White rhinoceros  ======
         Princess of Burundi  ======
B D              Nile tilapia  ======
B D                      Fugu  ======
      Yellowbelly pufferfish  ======
B D                 Tetraodon  ======
                 Zebra mbuna  ======
B D                 Zebrafish  ======
B D                Coelacanth  ======
                 Spotted gar  ======
B D               Stickleback  ======
    Mexican tetra (cavefish)  ------
         Pundamilia nyererei  ======
       Burton's mouthbreeder  ======
  D  Chinese softshell turtle  ======
  D           Green seaturtle  ======
  D       Collared flycatcher  ======
          Southern platyfish  ======
B D             X. tropicalis  ======
B D                Budgerigar  ======
B D                  Platypus  ======
B D       Medium ground finch  ======
  D    White-throated sparrow  ======
  D          Peregrine falcon  ======
  D              Saker falcon  ======
B D                    Turkey  ======
B D                   Chicken  ======
B D                    Lizard  ======
B D                    Medaka  ======
B D               Zebra finch  ======
B D           Squirrel monkey  ======
  D            Painted turtle  ======
          Tibetan ground jay  ======
B D           Tasmanian devil  ======
B D                   Wallaby  ======
B D                   Opossum  ======
  D               Rock pigeon  ======
B D                   Lamprey  ======
                    Aardvark  ======
  D              Mallard duck  ======
                Weddell seal  ======
            Cape golden mole  ======
B D                   Dolphin  ======
B D                       Pig  ======
B D                   Megabat  ======
B D        American alligator  ======

Inserts between block 1 and 2 in window
      Lesser Egyptian jerboa 1509bp

Alignment block 2 of 34 in window, 115250719 - 115250854, 136 bps 
B D                     Human  gtccactggacccc------taaatattttaccaatat-caaagtctctgaa---------tctttgtag
B D                     Chimp  gtccactggacccc------taaatattttaccaatat-caaagtctctgaa---------tctttgtag
B D                   Gorilla  gtccactggacccc------taaatattttaccaatat-caaagtctctgaa---------tctttgtag
B D                 Orangutan  ttccactggacccc------taaatattttaccaatat-caaagtctctgaa---------tccttgtag
B D                    Gibbon  gtccactggacccc------taaatattttaccaatat-caaagcctttgaa---------tctttgtgg
B D                    Rhesus  gtccactggaccac------taaatattttaccaacat-gaaagtctctgaa---------tctttgtag
B D       Crab-eating macaque  gtccactggaccac------taaatattttaccaacat-gaaagtctctgaa---------tctttgtag
B D                    Baboon  gtccactggaccac------taaatattttaccaacat-gaaagtctctgaa---------tctttgtag
B D              Green monkey  gtccactggaccac------taaatattttaccaacat-gaaagtctctgaa---------tctttgtag
B D                  Marmoset  gtccactggatccc------tacacattttaccaatat-gaaagtctctgaa---------tctttgtag
           Chinese tree shrew  gaccactggacccc------taaatattttaccaatatggaaggcctctgaa---------gttttgtag
B D                  Squirrel  gaccactggacccc------taagtagttcaccaatatggaaagtctctgaa---------tatttttag
                 Prairie vole  ggccattggaccct------catatattttagcaatacggaaag--tctgta---------gttttgtat
B D           Chinese hamster  ggcca--ggacact------tatatattttagcactatggaaaa--tcttaa---------attttgtg-
               Golden hamster  ggccactggaccct------tatatattttggcaatttggaaaa--tctgaa---------gttttgtg-
B D                     Mouse  ggccattggtccct------tttataatttagcaatatggaaag--cctgaa---------tttttgcat
B D                       Rat  gtccattggacgat------tatacatttcaacaatgtggaaac--catgaa---------tgtctgtgt
B D            Naked mole-rat  gaccatggcactgc------taaatgttttgccaacatggaatgcctctgaa---------tctttgtag
B D                Guinea pig  gaccactgcacttcacccaat-aatatttcactattatggactgtctctaaa---------tctttgtag
                   Chinchilla  gaccattgcactcc------taaatattttaccaatatggaatgtctctaaa---------tctttgtag
             Brush-tailed rat  gactactgcattcc------t-aatattttatcaatatggaatgcctctaaa---------tctttgtag
B D                    Rabbit  gcctactggacccc------taaatattatacaagtatgaa-ggtctctgac---------tctttgtag
B D                      Pika  aactactggacccc------tgaa-gttttgtttgtatggt-tgttgttaatcaatacaaatctttatag
         Cape elephant shrew  ======================================================================
B D                  Hedgehog  ======================================================================
B D                     Shrew  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
B D                       Cow  ======================================================================
            Tibetan antelope  ======================================================================
               Big brown bat  ======================================================================
B D                  Microbat  ======================================================================
        David's myotis (bat)  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
             Star-nosed mole  ======================================================================
B D                     Panda  ======================================================================
B D                       Dog  ======================================================================
                Killer whale  ======================================================================
B D                   Ferret   ======================================================================
B D                       Cat  ======================================================================
              Pacific walrus  ======================================================================
B D                   Manatee  ======================================================================
B D                  Elephant  ======================================================================
B D                 Armadillo  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
B D                    Tenrec  ======================================================================
B D                  Bushbaby  ======================================================================
B D                     Horse  ======================================================================
            Black flying-fox  ======================================================================
B D          White rhinoceros  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
B D                      Fugu  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                 Tetraodon  ======================================================================
                 Zebra mbuna  ======================================================================
B D                 Zebrafish  ======================================================================
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
    Mexican tetra (cavefish)  ----------------------------------------------------------------------
         Pundamilia nyererei  ======================================================================
       Burton's mouthbreeder  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D           Green seaturtle  ======================================================================
  D       Collared flycatcher  ======================================================================
          Southern platyfish  ======================================================================
B D             X. tropicalis  ======================================================================
B D                Budgerigar  ======================================================================
B D                  Platypus  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
B D                    Lizard  ======================================================================
B D                    Medaka  ======================================================================
B D               Zebra finch  ======================================================================
B D           Squirrel monkey  ======================================================================
  D            Painted turtle  ======================================================================
          Tibetan ground jay  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                   Wallaby  ======================================================================
B D                   Opossum  ======================================================================
  D               Rock pigeon  ======================================================================
B D                   Lamprey  ======================================================================
                    Aardvark  ======================================================================
  D              Mallard duck  ======================================================================
                Weddell seal  ======================================================================
            Cape golden mole  ======================================================================
B D                   Dolphin  ======================================================================
B D                       Pig  ======================================================================
B D                   Megabat  ======================================================================
B D        American alligator  ======================================================================

                        Human  gtttt-attttccatcctttgaagcata------tgtc--ttaag-aaggtctctgttgcat----tatt
                        Chimp  gtttt-attttccatcctttgaagcata------tgtc--ttaag-aaggtctctgttgcat----tatt
                      Gorilla  gtttt-attttccatcctttgaagcata------tgtc--ttaag-aaggtctctgttgcat----tatt
                    Orangutan  gtttt-attttccaccctttgaagcata------tgtc--ttaag-aaggtctctgttgcat----tatt
                       Gibbon  gtttt-attttccaccctttgaagcata------cgtc--ttaag-aaggtctctgttgcat----tatt
                       Rhesus  atttt-attttccaccctttgaagcata------tgtc--ttaag-aaggtctctgttgcat----tatt
          Crab-eating macaque  atttt-attttccaccctttgaagcata------tgtc--ttaag-aaggtctctgttgcat----tatt
                       Baboon  atttt-attttccaccctttgaagcata------tgtc--ttaag-aaggtctctgttgcat----tatt
                 Green monkey  atttt-attttccaccctttgaagcata------tgtc--ttaag-aaggtctctgttgcat----tatt
                     Marmoset  gtttt-a-tttccactctttgaagcata------tgtc--ttaag-aaggtttctgttgcat----tatt
           Chinese tree shrew  gtttt-atcttctacatgttaaagaata----tgtgtc--tt----aaggcctccattgtattag-tatt
                     Squirrel  gttttaatcttctaccccttgaagcatg----tatgtc--ttaa----atcctcccttgcattagttatt
                 Prairie vole  aattt-accttatgttgtttggagggca----cctgtc--ttaat-aaggtttccattgaattgattgtt
              Chinese hamster  ----t-gtcttatatcttttggagtaca----cctgtc--ttaaa-aagctctccattgcatttattatt
               Golden hamster  ----t-gtcttatatcttttggagcaca----cctgtc--ttaat-aagctcttcatggcatttattagt
                        Mouse  atttt-gttttacattttttggagtata----gctatc--ttaat-aaggtctccgttgcattaattatt
                          Rat  atttt-atttcacatcttttggggtatg----gctgtc--ttaac-agagcctccatcgtgttaactagt
               Naked mole-rat  gcttt-gtaccc-----tttgaagcata----catgtg--ttaagaaaaatctctgttgcattagttatt
                   Guinea pig  ctttt-atcttctcccctttgaagcata----ttcgtg--ttaat-aaggtc--tgttgcatcagttaat
                   Chinchilla  gtttt-ctcttctacgctttgaaacata----tgtatg--ttaat-aaagtctctgttgcattagctatt
             Brush-tailed rat  gtttt-gtcttctg---tttgaagcaca----tgtgtgtattaat-aaaatctgtgttgcattagttatc
                       Rabbit  gtttt-atcttctacc-tttgaattatgggattgtgtc--taaac-aaggtctccatcacattaggattc
                         Pika  attgt-atcttctatt-tttgaagcttatgtttacttc--taaac-aaggtgtccatcatattag---ct
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
                        Shrew  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
                          Cow  ======================================================================
             Tibetan antelope  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
         David's myotis (bat)  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  ======================================================================
                        Panda  ======================================================================
                          Dog  ======================================================================
                 Killer whale  ======================================================================
                      Ferret   ======================================================================
                          Cat  ======================================================================
               Pacific walrus  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
                    Armadillo  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                       Tenrec  ======================================================================
                     Bushbaby  ======================================================================
                        Horse  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Tetraodon  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
          Pundamilia nyererei  ======================================================================
        Burton's mouthbreeder  ======================================================================
     Chinese softshell turtle  ======================================================================
              Green seaturtle  ======================================================================
          Collared flycatcher  ======================================================================
           Southern platyfish  ======================================================================
                X. tropicalis  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                       Lizard  ======================================================================
                       Medaka  ======================================================================
                  Zebra finch  ======================================================================
              Squirrel monkey  ======================================================================
               Painted turtle  ======================================================================
           Tibetan ground jay  ======================================================================
              Tasmanian devil  ======================================================================
                      Wallaby  ======================================================================
                      Opossum  ======================================================================
                  Rock pigeon  ======================================================================
                      Lamprey  ======================================================================
                     Aardvark  ======================================================================
                 Mallard duck  ======================================================================
                 Weddell seal  ======================================================================
             Cape golden mole  ======================================================================
                      Dolphin  ======================================================================
                          Pig  ======================================================================
                      Megabat  ======================================================================
           American alligator  ======================================================================

                        Human  cttgcccatctggcccaattagcata
                        Chimp  cttgcccatctggcccagttagcata
                      Gorilla  cttgcccatctggcccaattagcata
                    Orangutan  cttgcccatctggcccaattagccta
                       Gibbon  cttgcccatctggcccgattagcata
                       Rhesus  cttgcccatctggcccaattagcata
          Crab-eating macaque  cttgcccatctggcccaattagcata
                       Baboon  cttgcccatctggcccaattagcata
                 Green monkey  cttgcccatctggcccaattagc-ta
                     Marmoset  cttgcccatctggcccaattagcatg
           Chinese tree shrew  cttgcttctctggctcaattagtgtg
                     Squirrel  cttgctcatctggtccaaacagtatg
                 Prairie vole  ctcaatattctgatcctattagcaca
              Chinese hamster  ctcgatattctggtcctgttagcata
               Golden hamster  cttgatactctggtcctattagccta
                        Mouse  cttaatattctggtcctattagc---
                          Rat  cttgatattctgggcctcttagc---
               Naked mole-rat  ctttcttatctggtacatttactgtg
                   Guinea pig  tttgtttatttgatccagttagtgtg
                   Chinchilla  cttaattatctgatccatttagtgtg
             Brush-tailed rat  cttgtgtatctgatccatttagtctg
                       Rabbit  cctgtttatttggcctgat-------
                         Pika  attgtcta-ttggcctgat-------
          Cape elephant shrew  ==========================
                     Hedgehog  ==========================
                        Shrew  ==========================
                Domestic goat  ==========================
                        Sheep  ==========================
                          Cow  ==========================
             Tibetan antelope  ==========================
                Big brown bat  ==========================
                     Microbat  ==========================
         David's myotis (bat)  ==========================
               Bactrian camel  ==========================
                       Alpaca  ==========================
              Star-nosed mole  ==========================
                        Panda  ==========================
                          Dog  ==========================
                 Killer whale  ==========================
                      Ferret   ==========================
                          Cat  ==========================
               Pacific walrus  ==========================
                      Manatee  ==========================
                     Elephant  ==========================
                    Armadillo  ==========================
       Lesser Egyptian jerboa  ==========================
                       Tenrec  ==========================
                     Bushbaby  ==========================
                        Horse  ==========================
             Black flying-fox  ==========================
             White rhinoceros  ==========================
          Princess of Burundi  ==========================
                 Nile tilapia  ==========================
                         Fugu  ==========================
       Yellowbelly pufferfish  ==========================
                    Tetraodon  ==========================
                  Zebra mbuna  ==========================
                    Zebrafish  ==========================
                   Coelacanth  ==========================
                  Spotted gar  ==========================
                  Stickleback  ==========================
     Mexican tetra (cavefish)  --------------------------
          Pundamilia nyererei  ==========================
        Burton's mouthbreeder  ==========================
     Chinese softshell turtle  ==========================
              Green seaturtle  ==========================
          Collared flycatcher  ==========================
           Southern platyfish  ==========================
                X. tropicalis  ==========================
                   Budgerigar  ==========================
                     Platypus  ==========================
          Medium ground finch  ==========================
       White-throated sparrow  ==========================
             Peregrine falcon  ==========================
                 Saker falcon  ==========================
                       Turkey  ==========================
                      Chicken  ==========================
                       Lizard  ==========================
                       Medaka  ==========================
                  Zebra finch  ==========================
              Squirrel monkey  ==========================
               Painted turtle  ==========================
           Tibetan ground jay  ==========================
              Tasmanian devil  ==========================
                      Wallaby  ==========================
                      Opossum  ==========================
                  Rock pigeon  ==========================
                      Lamprey  ==========================
                     Aardvark  ==========================
                 Mallard duck  ==========================
                 Weddell seal  ==========================
             Cape golden mole  ==========================
                      Dolphin  ==========================
                          Pig  ==========================
                      Megabat  ==========================
           American alligator  ==========================

Inserts between block 2 and 3 in window
B D                 Marmoset 4bp
B D                 Squirrel 9bp
B D          Chinese hamster 285bp

Alignment block 3 of 34 in window, 115250855 - 115250885, 31 bps 
B D                     Human  atgttgttaatg---tagtagaacaatgtaatgt
B D                     Chimp  atgtcgttaatg---tagtagaacaatgtaatgt
B D                   Gorilla  atgttgttaatg---tagtagaacaatgtaatgt
B D                 Orangutan  atgttgttaatg---tagtagaacagcgtaatgt
B D                    Gibbon  atgttgttaatg---tagtagaacaacgtaatgt
B D                    Rhesus  atggtgttaatg---tagtagaacaacgtaatgt
B D       Crab-eating macaque  atggtgttaatg---tagtagaacaacgtaatgt
B D                    Baboon  atggtgttaatg---tagtagaacaacgtaatgt
B D              Green monkey  atggtgttaatg---tagtaggacaacgtaatgt
B D                  Marmoset  atcatgctaatg---tagtggaacactgtaatgt
           Chinese tree shrew  atgtcattaaggtaatagtagaacgatgtagtgt
B D                  Squirrel  atg-------ta---t---agactggtacagtat
                 Prairie vole  ----------ta---t--caaaacagtgttatgt
               Golden hamster  ----------ta---t--caaaacaatgagatgt
B D                     Mouse  atg-------ta---t--caaaacaatataacat
B D                       Rat  atg-------ta---t---aaaacaatgtagtgt
B D            Naked mole-rat  atgtcattaatg---ta-tcgaaacaggtagtat
B D                Guinea pig  atgtcattaaca---t--tggaacaaggtagtgt
                   Chinchilla  gtgtcattaaca---t--tggaacaaggtaatgt
             Brush-tailed rat  atgtcattaata---t--tggaacaaggtaatgt
B D                    Rabbit  ---tcatttaca---t------------------
B D                      Pika  ---tcattaata---t------------------
         Cape elephant shrew  ==================================
B D                  Hedgehog  ==================================
B D                     Shrew  ==================================
               Domestic goat  ==================================
B D                     Sheep  ==================================
B D                       Cow  ==================================
            Tibetan antelope  ==================================
               Big brown bat  ==================================
B D                  Microbat  ==================================
        David's myotis (bat)  ==================================
              Bactrian camel  ==================================
B D                    Alpaca  ==================================
             Star-nosed mole  ==================================
B D                     Panda  ==================================
B D                       Dog  ==================================
B D           Chinese hamster  ==================================
                Killer whale  ==================================
B D                   Ferret   ==================================
B D                       Cat  ==================================
              Pacific walrus  ==================================
B D                   Manatee  ==================================
B D                  Elephant  ==================================
B D                 Armadillo  ==================================
      Lesser Egyptian jerboa  ==================================
B D                    Tenrec  ==================================
B D                  Bushbaby  ==================================
B D                     Horse  ==================================
            Black flying-fox  ==================================
B D          White rhinoceros  ==================================
         Princess of Burundi  ==================================
B D              Nile tilapia  ==================================
B D                      Fugu  ==================================
      Yellowbelly pufferfish  ==================================
B D                 Tetraodon  ==================================
                 Zebra mbuna  ==================================
B D                 Zebrafish  ==================================
B D                Coelacanth  ==================================
                 Spotted gar  ==================================
B D               Stickleback  ==================================
    Mexican tetra (cavefish)  ----------------------------------
         Pundamilia nyererei  ==================================
       Burton's mouthbreeder  ==================================
  D  Chinese softshell turtle  ==================================
  D           Green seaturtle  ==================================
  D       Collared flycatcher  ==================================
          Southern platyfish  ==================================
B D             X. tropicalis  ==================================
B D                Budgerigar  ==================================
B D                  Platypus  ==================================
B D       Medium ground finch  ==================================
  D    White-throated sparrow  ==================================
  D          Peregrine falcon  ==================================
  D              Saker falcon  ==================================
B D                    Turkey  ==================================
B D                   Chicken  ==================================
B D                    Lizard  ==================================
B D                    Medaka  ==================================
B D               Zebra finch  ==================================
B D           Squirrel monkey  ==================================
  D            Painted turtle  ==================================
          Tibetan ground jay  ==================================
B D           Tasmanian devil  ==================================
B D                   Wallaby  ==================================
B D                   Opossum  ==================================
  D               Rock pigeon  ==================================
B D                   Lamprey  ==================================
                    Aardvark  ==================================
  D              Mallard duck  ==================================
                Weddell seal  ==================================
            Cape golden mole  ==================================
B D                   Dolphin  ==================================
B D                       Pig  ==================================
B D                   Megabat  ==================================
B D        American alligator  ==================================

Inserts between block 3 and 4 in window
                Prairie vole 1bp
              Golden hamster 368bp

Alignment block 4 of 34 in window, 115250886 - 115250886, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                   Gorilla  t
B D                 Orangutan  t
B D                    Gibbon  t
B D                    Rhesus  t
B D       Crab-eating macaque  t
B D                    Baboon  t
B D              Green monkey  t
B D                  Marmoset  t
           Chinese tree shrew  t
B D                  Squirrel  t
                 Prairie vole  t
B D                     Mouse  t
B D                       Rat  c
B D            Naked mole-rat  t
B D                Guinea pig  t
                   Chinchilla  t
             Brush-tailed rat  t
         Cape elephant shrew  =
B D                  Hedgehog  =
B D                     Shrew  =
               Domestic goat  =
B D                     Sheep  =
B D                       Cow  =
            Tibetan antelope  =
               Big brown bat  =
B D                  Microbat  =
        David's myotis (bat)  =
              Bactrian camel  =
B D                    Alpaca  =
             Star-nosed mole  =
B D                     Panda  =
B D                       Dog  =
B D           Chinese hamster  =
              Golden hamster  =
                Killer whale  =
B D                   Ferret   =
B D                       Cat  =
B D                      Pika  -
              Pacific walrus  =
B D                    Rabbit  -
B D                   Manatee  =
B D                  Elephant  =
B D                 Armadillo  =
      Lesser Egyptian jerboa  =
B D                    Tenrec  =
B D                  Bushbaby  =
B D                     Horse  =
            Black flying-fox  =
B D          White rhinoceros  =
         Princess of Burundi  =
B D              Nile tilapia  =
B D                      Fugu  =
      Yellowbelly pufferfish  =
B D                 Tetraodon  =
                 Zebra mbuna  =
B D                 Zebrafish  =
B D                Coelacanth  =
                 Spotted gar  =
B D               Stickleback  =
    Mexican tetra (cavefish)  -
         Pundamilia nyererei  =
       Burton's mouthbreeder  =
  D  Chinese softshell turtle  =
  D           Green seaturtle  =
  D       Collared flycatcher  =
          Southern platyfish  =
B D             X. tropicalis  =
B D                Budgerigar  =
B D                  Platypus  =
B D       Medium ground finch  =
  D    White-throated sparrow  =
  D          Peregrine falcon  =
  D              Saker falcon  =
B D                    Turkey  =
B D                   Chicken  =
B D                    Lizard  =
B D                    Medaka  =
B D               Zebra finch  =
B D           Squirrel monkey  =
  D            Painted turtle  =
          Tibetan ground jay  =
B D           Tasmanian devil  =
B D                   Wallaby  =
B D                   Opossum  =
  D               Rock pigeon  =
B D                   Lamprey  =
                    Aardvark  =
  D              Mallard duck  =
                Weddell seal  =
            Cape golden mole  =
B D                   Dolphin  =
B D                       Pig  =
B D                   Megabat  =
B D        American alligator  =

Inserts between block 4 and 5 in window
B D                    Mouse 264bp
B D           Naked mole-rat 1bp

Alignment block 5 of 34 in window, 115250887 - 115250888, 2 bps 
B D                     Human  ct
B D                     Chimp  ct
B D                   Gorilla  ct
B D                 Orangutan  ct
B D                    Gibbon  ct
B D                    Rhesus  ct
B D       Crab-eating macaque  ct
B D                    Baboon  ct
B D              Green monkey  ct
B D                  Marmoset  ct
           Chinese tree shrew  ct
B D                  Squirrel  tt
                 Prairie vole  tt
B D                       Rat  tt
B D            Naked mole-rat  tt
                   Chinchilla  tc
B D                      Pika  ct
         Cape elephant shrew  ==
B D                  Hedgehog  ==
B D                     Shrew  ==
               Domestic goat  ==
B D                     Sheep  ==
B D                       Cow  ==
            Tibetan antelope  ==
               Big brown bat  ==
B D                  Microbat  ==
        David's myotis (bat)  ==
              Bactrian camel  ==
B D                    Alpaca  ==
             Star-nosed mole  ==
B D                     Mouse  ==
B D                     Panda  ==
B D                       Dog  ==
B D           Chinese hamster  ==
              Golden hamster  ==
                Killer whale  ==
B D                   Ferret   ==
B D                       Cat  ==
              Pacific walrus  ==
B D                    Rabbit  --
B D                Guinea pig  --
B D                   Manatee  ==
B D                  Elephant  ==
B D                 Armadillo  ==
      Lesser Egyptian jerboa  ==
            Brush-tailed rat  --
B D                    Tenrec  ==
B D                  Bushbaby  ==
B D                     Horse  ==
            Black flying-fox  ==
B D          White rhinoceros  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
B D                      Fugu  ==
      Yellowbelly pufferfish  ==
B D                 Tetraodon  ==
                 Zebra mbuna  ==
B D                 Zebrafish  ==
B D                Coelacanth  ==
                 Spotted gar  ==
B D               Stickleback  ==
    Mexican tetra (cavefish)  --
         Pundamilia nyererei  ==
       Burton's mouthbreeder  ==
  D  Chinese softshell turtle  ==
  D           Green seaturtle  ==
  D       Collared flycatcher  ==
          Southern platyfish  ==
B D             X. tropicalis  ==
B D                Budgerigar  ==
B D                  Platypus  ==
B D       Medium ground finch  ==
  D    White-throated sparrow  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
B D                    Turkey  ==
B D                   Chicken  ==
B D                    Lizard  ==
B D                    Medaka  ==
B D               Zebra finch  ==
B D           Squirrel monkey  ==
  D            Painted turtle  ==
          Tibetan ground jay  ==
B D           Tasmanian devil  ==
B D                   Wallaby  ==
B D                   Opossum  ==
  D               Rock pigeon  ==
B D                   Lamprey  ==
                    Aardvark  ==
  D              Mallard duck  ==
                Weddell seal  ==
            Cape golden mole  ==
B D                   Dolphin  ==
B D                       Pig  ==
B D                   Megabat  ==
B D        American alligator  ==

Inserts between block 5 and 6 in window
B D                      Rat 255bp

Alignment block 6 of 34 in window, 115250889 - 115250897, 9 bps 
B D                     Human  gcaagatgt
B D                     Chimp  gcaagatat
B D                   Gorilla  gcaagatat
B D                 Orangutan  gcaagatat
B D                    Gibbon  gcaagatat
B D                    Rhesus  gcaaaatat
B D       Crab-eating macaque  gcaaaatat
B D                    Baboon  gcaagatat
B D              Green monkey  gcaagatat
B D                  Marmoset  gtaagatat
           Chinese tree shrew  gcaagatat
B D                  Squirrel  gtaagttat
                 Prairie vole  tcaatatat
B D            Naked mole-rat  gtaagatat
B D                Guinea pig  ttatgatac
                   Chinchilla  gtaaggtat
B D                      Pika  gcaagatat
         Cape elephant shrew  =========
B D                  Hedgehog  =========
B D                     Shrew  =========
               Domestic goat  =========
B D                     Sheep  =========
B D                       Cow  =========
            Tibetan antelope  =========
               Big brown bat  =========
B D                  Microbat  =========
        David's myotis (bat)  =========
              Bactrian camel  =========
B D                    Alpaca  =========
             Star-nosed mole  =========
B D                     Mouse  =========
B D                     Panda  =========
B D                       Dog  =========
B D                       Rat  =========
B D           Chinese hamster  =========
              Golden hamster  =========
                Killer whale  =========
B D                   Ferret   =========
B D                       Cat  =========
              Pacific walrus  =========
B D                    Rabbit  ---------
B D                   Manatee  =========
B D                  Elephant  =========
B D                 Armadillo  =========
      Lesser Egyptian jerboa  =========
            Brush-tailed rat  ---------
B D                    Tenrec  =========
B D                  Bushbaby  =========
B D                     Horse  =========
            Black flying-fox  =========
B D          White rhinoceros  =========
         Princess of Burundi  =========
B D              Nile tilapia  =========
B D                      Fugu  =========
      Yellowbelly pufferfish  =========
B D                 Tetraodon  =========
                 Zebra mbuna  =========
B D                 Zebrafish  =========
B D                Coelacanth  =========
                 Spotted gar  =========
B D               Stickleback  =========
    Mexican tetra (cavefish)  ---------
         Pundamilia nyererei  =========
       Burton's mouthbreeder  =========
  D  Chinese softshell turtle  =========
  D           Green seaturtle  =========
  D       Collared flycatcher  =========
          Southern platyfish  =========
B D             X. tropicalis  =========
B D                Budgerigar  =========
B D                  Platypus  =========
B D       Medium ground finch  =========
  D    White-throated sparrow  =========
  D          Peregrine falcon  =========
  D              Saker falcon  =========
B D                    Turkey  =========
B D                   Chicken  =========
B D                    Lizard  =========
B D                    Medaka  =========
B D               Zebra finch  =========
B D           Squirrel monkey  =========
  D            Painted turtle  =========
          Tibetan ground jay  =========
B D           Tasmanian devil  =========
B D                   Wallaby  =========
B D                   Opossum  =========
  D               Rock pigeon  =========
B D                   Lamprey  =========
                    Aardvark  =========
  D              Mallard duck  =========
                Weddell seal  =========
            Cape golden mole  =========
B D                   Dolphin  =========
B D                       Pig  =========
B D                   Megabat  =========
B D        American alligator  =========

Inserts between block 6 and 7 in window
                Prairie vole 1799bp

Alignment block 7 of 34 in window, 115250898 - 115251145, 248 bps 
B D                     Human  ccaacaggatcaaatgtattctgactatg-tatgacaa-----aagagggcggaattaatatcatcctaa
B D                     Chimp  ccaacaggatcaaatgtattctgactatg-tatgacaa-----aagagggcggaattaatatcatcctaa
B D                   Gorilla  ccaacaggatcaaatgtattctgactatg-tatgacaa-----aagagggcggaattaatatcatcctaa
B D                 Orangutan  ccaacaggatcaaatgtattctgactatg-tatgacaa-----aagagggcggaattaatatcatcctaa
B D                    Gibbon  ccaacaggatcaaatgtatt----ctatg-tatgacaa-----aagagggtggaattaatatcatcctaa
B D                    Rhesus  ccaacagga----------------------------------------------------------taa
B D       Crab-eating macaque  ccaacagga----------------------------------------------------------taa
B D                    Baboon  ccaacaggatcaaatgtattctgactatg-tatgaaaa-----aagagggcagaattaatatcatcctaa
B D              Green monkey  tcaacgggatcaaatgtattctgactatg-tatgacaa-----aagagagcagaattaatatcatcctaa
B D                  Marmoset  acaacaggatcaaatgtattctgggtatg-tatgacaa-----aagaaggcagagttaatatcatcctaa
           Chinese tree shrew  ccaattggctccaatgtattctgactgtattatgacaatagggaaaaaaaaagagttaatatctgc---a
B D                  Squirrel  tcagttggata--------tct--ttgt--tatgacaa-----aaggagagagaaataatattattctga
B D            Naked mole-rat  ctaattgaatgaaatgtattct--ctat--tatgtta------------------------ttattcagg
B D                Guinea pig  ctaattggaaaaaatgtattct--ctat--tacgtta-------------------------tattcaga
                   Chinchilla  ctaattggataaaatatatcct--ctat--tacgtta------------------------ttattcaga
B D                    Rabbit  -------------------------------------g-----gtg----------------------ga
B D                      Pika  ccagttagatcaaatagat--t--ttgc--tatgatag-----gcgataggagaattaatatctcgctaa
         Cape elephant shrew  ======================================================================
B D                  Hedgehog  ======================================================================
B D                     Shrew  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
B D                       Cow  ======================================================================
            Tibetan antelope  ======================================================================
               Big brown bat  ======================================================================
B D                  Microbat  ======================================================================
        David's myotis (bat)  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
             Star-nosed mole  ======================================================================
B D                     Mouse  ======================================================================
B D                     Panda  ======================================================================
B D                       Dog  ======================================================================
B D                       Rat  ======================================================================
                Prairie vole  ======================================================================
B D           Chinese hamster  ======================================================================
              Golden hamster  ======================================================================
                Killer whale  ======================================================================
B D                   Ferret   ======================================================================
B D                       Cat  ======================================================================
              Pacific walrus  ======================================================================
B D                   Manatee  ======================================================================
B D                  Elephant  ======================================================================
B D                 Armadillo  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
            Brush-tailed rat  ----------------------------------------------------------------------
B D                    Tenrec  ======================================================================
B D                  Bushbaby  ======================================================================
B D                     Horse  ======================================================================
            Black flying-fox  ======================================================================
B D          White rhinoceros  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
B D                      Fugu  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                 Tetraodon  ======================================================================
                 Zebra mbuna  ======================================================================
B D                 Zebrafish  ======================================================================
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
    Mexican tetra (cavefish)  ----------------------------------------------------------------------
         Pundamilia nyererei  ======================================================================
       Burton's mouthbreeder  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D           Green seaturtle  ======================================================================
  D       Collared flycatcher  ======================================================================
          Southern platyfish  ======================================================================
B D             X. tropicalis  ======================================================================
B D                Budgerigar  ======================================================================
B D                  Platypus  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
B D                    Lizard  ======================================================================
B D                    Medaka  ======================================================================
B D               Zebra finch  ======================================================================
B D           Squirrel monkey  ======================================================================
  D            Painted turtle  ======================================================================
          Tibetan ground jay  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                   Wallaby  ======================================================================
B D                   Opossum  ======================================================================
  D               Rock pigeon  ======================================================================
B D                   Lamprey  ======================================================================
                    Aardvark  ======================================================================
  D              Mallard duck  ======================================================================
                Weddell seal  ======================================================================
            Cape golden mole  ======================================================================
B D                   Dolphin  ======================================================================
B D                       Pig  ======================================================================
B D                   Megabat  ======================================================================
B D        American alligator  ======================================================================

                        Human  ggcaaaa-gtgtgaaggtatacta-gtttcccctccatgtgaa--tgcaaactatttttga-tc--ctct
                        Chimp  ggcaaaa-gtgtgaaggtatacta-gtttctcctccatgtgaa--tgcaaactatttatga-tc--ct-t
                      Gorilla  ggcaaaa-gtgtgaaggtatacta-gtttcccctgcatgtgaa--tgcaaactatttttga-tc--ctct
                    Orangutan  ggcaaaa-gtgtgaaagtatacta-gtttcccctccatgtgaa--tgcaaactatttttga-tc--ctcc
                       Gibbon  ggcaaaa-gtgtgaaggtatacta-gtttcccctccatgtgaa--tgcaaactatttttga-tc--ctct
                       Rhesus  ggcaaaa-gtgtgaaggtatacta-gtttcccttccatgagaa--tgcaaatgatttttga-tc--ctct
          Crab-eating macaque  ggcaaaa-gtgtgaaggtatacta-gtttcccttccatgagaa--tgcaaatgatttttga-tc--ctct
                       Baboon  ggcaaaa-gtgtgaaggtatacta-gtttcccttccatgagaa--tgcaaatgatt------tc--ctct
                 Green monkey  ggtgaaa-gtgtgaaagtatacta-gtttcccttccatgagaa--tgcaaacgatttttga-tc--ctct
                     Marmoset  ggcaaaa-gtgtgaatgtgtacta-tgttcccctccat--gaa--tgcaagctatttttga-tc--ctct
           Chinese tree shrew  gacaaaa-gtaaaatcgtatactg-tttttcattctatgtg-------------tttttga-tc--cttg
                     Squirrel  ggcaaaatttgtgaa-gtataata-ttttctattccatgtgaactttcaaactgttatcaactc--ttgt
               Naked mole-rat  ggcaaaa-ttgtgaa-gtatatta-ttttttacttcatgtgct--tgcaaact-tttttga-tctttttt
                   Guinea pig  gacaaaa-ttgtgaa-gtatactatttttttatcccatgtgaa--tgcaaactgtttttga-tc--ttgt
                   Chinchilla  ggcagaa-ttgtgaa-gtgtacta-ttttctatcccatgtgaa--tgcaaactgtttctga-tg--tttt
                       Rabbit  agcaaaa-ttatgaaagtatacta-tttgccattttgtttgaa--ttcatactagttttga-tc--ctgt
                         Pika  ggcataa-ttatgaatatatacta-ctttctattttatttgaa--tatgtactggttttga-tc--ctct
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
                        Shrew  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
                          Cow  ======================================================================
             Tibetan antelope  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
         David's myotis (bat)  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                          Dog  ======================================================================
                          Rat  ======================================================================
                 Prairie vole  ======================================================================
              Chinese hamster  ======================================================================
               Golden hamster  ======================================================================
                 Killer whale  ======================================================================
                      Ferret   ======================================================================
                          Cat  ======================================================================
               Pacific walrus  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
                    Armadillo  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
             Brush-tailed rat  ----------------------------------------------------------------------
                       Tenrec  ======================================================================
                     Bushbaby  ======================================================================
                        Horse  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Tetraodon  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
          Pundamilia nyererei  ======================================================================
        Burton's mouthbreeder  ======================================================================
     Chinese softshell turtle  ======================================================================
              Green seaturtle  ======================================================================
          Collared flycatcher  ======================================================================
           Southern platyfish  ======================================================================
                X. tropicalis  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                       Lizard  ======================================================================
                       Medaka  ======================================================================
                  Zebra finch  ======================================================================
              Squirrel monkey  ======================================================================
               Painted turtle  ======================================================================
           Tibetan ground jay  ======================================================================
              Tasmanian devil  ======================================================================
                      Wallaby  ======================================================================
                      Opossum  ======================================================================
                  Rock pigeon  ======================================================================
                      Lamprey  ======================================================================
                     Aardvark  ======================================================================
                 Mallard duck  ======================================================================
                 Weddell seal  ======================================================================
             Cape golden mole  ======================================================================
                      Dolphin  ======================================================================
                          Pig  ======================================================================
                      Megabat  ======================================================================
           American alligator  ======================================================================

                        Human  tttttgat--a--gttagcaaagaacacatttgccgactccatggccatgttaatcttctctaataaag-
                        Chimp  tttttgat--a--gttagcaaagaacacatttgccgactccatggccatgttaatcttctctaataaag-
                      Gorilla  tttttgat--a--gttagcaaagaacacatttgccgactccatggccatgttaatctgctctaataaag-
                    Orangutan  tttttgat--a--gttagcaaagaacacatttgccaactccatggccatgttaatctgctctaataaag-
                       Gibbon  tttttgat--a--gttagcaaagaacacatttgccaactccatggccatgttaatctgctctaataaag-
                       Rhesus  tttttgat--a--gttagcaaagaacacatttgccaactccatggccatgttaatttgctctaataaaac
          Crab-eating macaque  tttttgat--a--gttagcaaagaacacatttgccaactccatggccatgttaatttgctctaataaaac
                       Baboon  tttttgaa--a--gttagcaaagaacacatttgccaactccatggccatgttaatttgctctaataaaac
                 Green monkey  ttttcgat--a--gttagcaaagaacacatttgccaactccatggccatgttaattggctctaataaaac
                     Marmoset  tttttgataga--gttagcaaagaacacatttgccaactccatggccatgttaatctgctctaataatg-
           Chinese tree shrew  cttctgat--agggctagcaaagaatacatttgcctaatcaatggtcacactagtctactctaacgaag-
                     Squirrel  tttataat--aagattaaa----aactcatttgacagttcaatggctgtgttagtcaggtctaacaaat-
               Naked mole-rat  tttctgag--agcattagcaaacaacacatttgccaattcaatagctatgttaatctgttctaacaaa--
                   Guinea pig  tttctagt--atcattagtaaagagcatatttgtcaattcaa---ctgtgttaacctggtctaatgaa--
                   Chinchilla  tttctgat--ctcattagcaac-aacacattcgccaattcaatggctatgttaatctggtctaacaaa--
                       Rabbit  ttttcaat--agggttagcaaagaacatatttgccaatc-agtgtccttgttagccttgtctaacaaag-
                         Pika  ttttcaat--aagattagcaaagaatatatttgccaattaaaagtccttgtcagtcttgccaaacaa---
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
                        Shrew  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
                          Cow  ======================================================================
             Tibetan antelope  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
         David's myotis (bat)  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                          Dog  ======================================================================
                          Rat  ======================================================================
                 Prairie vole  ======================================================================
              Chinese hamster  ======================================================================
               Golden hamster  ======================================================================
                 Killer whale  ======================================================================
                      Ferret   ======================================================================
                          Cat  ======================================================================
               Pacific walrus  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
                    Armadillo  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
             Brush-tailed rat  ----------------------------------------------------------------------
                       Tenrec  ======================================================================
                     Bushbaby  ======================================================================
                        Horse  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Tetraodon  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
          Pundamilia nyererei  ======================================================================
        Burton's mouthbreeder  ======================================================================
     Chinese softshell turtle  ======================================================================
              Green seaturtle  ======================================================================
          Collared flycatcher  ======================================================================
           Southern platyfish  ======================================================================
                X. tropicalis  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                       Lizard  ======================================================================
                       Medaka  ======================================================================
                  Zebra finch  ======================================================================
              Squirrel monkey  ======================================================================
               Painted turtle  ======================================================================
           Tibetan ground jay  ======================================================================
              Tasmanian devil  ======================================================================
                      Wallaby  ======================================================================
                      Opossum  ======================================================================
                  Rock pigeon  ======================================================================
                      Lamprey  ======================================================================
                     Aardvark  ======================================================================
                 Mallard duck  ======================================================================
                 Weddell seal  ======================================================================
             Cape golden mole  ======================================================================
                      Dolphin  ======================================================================
                          Pig  ======================================================================
                      Megabat  ======================================================================
           American alligator  ======================================================================

                        Human  atatacatcttgcacgacacctgcaattttag--tt-ctacttggtagtaggtgtctgc
                        Chimp  atatacatcttgcacgacacctgcaattttag--tt-ctacttggtagtaggtgtctgc
                      Gorilla  atatacatcttgcacgacacctgcaattttag--tt-ctacttgatagtaggtgtctgc
                    Orangutan  atatacatcttgcacgacacctgcaattttag--tt-ctacttggtagtaggtgactgc
                       Gibbon  atatacatcttgcacaacacctgcaattttag--tt-ctacttggcagtaggtgtctgc
                       Rhesus  atatacatcttgcataaca----caattttag--tt-ctacttggtggtaggtgactgc
          Crab-eating macaque  atatacatcttgcataaca----caattttag--tt-ctacttggtggtaggtgactgc
                       Baboon  atatacatcttgcataacacctgcaattttag--tt-ctacttggtggtaggtgactgc
                 Green monkey  atatacgtcttgcatagcacctgcaattttag--tt-ctacttggtggtaggtgactgc
                     Marmoset  atatacagcttgcatgattccagcaagtttag--ct-ctccttg-tagtaggcaactgc
           Chinese tree shrew  atatacatatggcgttgtg--tgtgatttagg--ctactacttagcagtaggtgatctt
                     Squirrel  gtatgtatcttgtgtggtgcctgcactttagg--ctattacttggtagtgggcaattgt
               Naked mole-rat  acatgtatct--attgatgcctgcactttgag--ctacttcttggtcataggatattgt
                   Guinea pig  acatatatct--tatgatgtctgtac-ttaag--ctgtttcttgatag---gttattat
                   Chinchilla  acatatatct--tgtgatgtctgtactttgag--ctacttcttggtaatgtggtattgt
                       Rabbit  atacataacttgtatggtgcctgcaatttgga--ccactgtttgatggt----------
                         Pika  ----------------gtgcttgcagtttgggctctactgtttgatgat----------
          Cape elephant shrew  ===========================================================
                     Hedgehog  ===========================================================
                        Shrew  ===========================================================
                Domestic goat  ===========================================================
                        Sheep  ===========================================================
                          Cow  ===========================================================
             Tibetan antelope  ===========================================================
                Big brown bat  ===========================================================
                     Microbat  ===========================================================
         David's myotis (bat)  ===========================================================
               Bactrian camel  ===========================================================
                       Alpaca  ===========================================================
              Star-nosed mole  ===========================================================
                        Mouse  ===========================================================
                        Panda  ===========================================================
                          Dog  ===========================================================
                          Rat  ===========================================================
                 Prairie vole  ===========================================================
              Chinese hamster  ===========================================================
               Golden hamster  ===========================================================
                 Killer whale  ===========================================================
                      Ferret   ===========================================================
                          Cat  ===========================================================
               Pacific walrus  ===========================================================
                      Manatee  ===========================================================
                     Elephant  ===========================================================
                    Armadillo  ===========================================================
       Lesser Egyptian jerboa  ===========================================================
             Brush-tailed rat  -----------------------------------------------------------
                       Tenrec  ===========================================================
                     Bushbaby  ===========================================================
                        Horse  ===========================================================
             Black flying-fox  ===========================================================
             White rhinoceros  ===========================================================
          Princess of Burundi  ===========================================================
                 Nile tilapia  ===========================================================
                         Fugu  ===========================================================
       Yellowbelly pufferfish  ===========================================================
                    Tetraodon  ===========================================================
                  Zebra mbuna  ===========================================================
                    Zebrafish  ===========================================================
                   Coelacanth  ===========================================================
                  Spotted gar  ===========================================================
                  Stickleback  ===========================================================
     Mexican tetra (cavefish)  -----------------------------------------------------------
          Pundamilia nyererei  ===========================================================
        Burton's mouthbreeder  ===========================================================
     Chinese softshell turtle  ===========================================================
              Green seaturtle  ===========================================================
          Collared flycatcher  ===========================================================
           Southern platyfish  ===========================================================
                X. tropicalis  ===========================================================
                   Budgerigar  ===========================================================
                     Platypus  ===========================================================
          Medium ground finch  ===========================================================
       White-throated sparrow  ===========================================================
             Peregrine falcon  ===========================================================
                 Saker falcon  ===========================================================
                       Turkey  ===========================================================
                      Chicken  ===========================================================
                       Lizard  ===========================================================
                       Medaka  ===========================================================
                  Zebra finch  ===========================================================
              Squirrel monkey  ===========================================================
               Painted turtle  ===========================================================
           Tibetan ground jay  ===========================================================
              Tasmanian devil  ===========================================================
                      Wallaby  ===========================================================
                      Opossum  ===========================================================
                  Rock pigeon  ===========================================================
                      Lamprey  ===========================================================
                     Aardvark  ===========================================================
                 Mallard duck  ===========================================================
                 Weddell seal  ===========================================================
             Cape golden mole  ===========================================================
                      Dolphin  ===========================================================
                          Pig  ===========================================================
                      Megabat  ===========================================================
           American alligator  ===========================================================

Alignment block 8 of 34 in window, 115251146 - 115251210, 65 bps 
B D                     Human  tatcctttaagctttgtttagttt-----------------------------gccaaactgat----ga
B D                     Chimp  tatcctttaagctttgtttagttt-----------------------------gccaaactgat----ga
B D                   Gorilla  tatcctttaagctttgtttagttt-----------------------------gccaaactgat----ga
B D                 Orangutan  tatcctttaagctttgtttagtttgc-----------------------aggggccaaactgat----ga
B D                    Gibbon  tatcctttaagctttgtttagtttgc-----------------------aggggccaaactgat----ga
B D                    Rhesus  tatcctttaagctttgtttagtttgc-----------------------aggggccaaactgat----ga
B D       Crab-eating macaque  tatcctttaagctttgtttagtttgc-----------------------aggggccaaactgat----ga
B D                    Baboon  tatcctttaagctttgtttagtttgc-----------------------aggggccaaactgat----ga
B D              Green monkey  tatcctttaaactttgtttggttagc-----------------------aggggccaaactgat----gg
B D                  Marmoset  tatcctttaagctttgtttagttttc-----------------------aggggccaaactgac----ga
           Chinese tree shrew  catctttcagactttgcttactctgc-----------------------aggggcc-agttgtt----ga
B D                  Squirrel  tatcctttagactttgtttggttttc-----------------------acggcccagaccaat----ta
B D            Naked mole-rat  tgtatttcaggctttgtttagtttgc-----------------------a-gggccagactgat----ga
B D                Guinea pig  tgtctttcaggcttt----agtttgt-----------------------a-gtgccagactgat----gt
                   Chinchilla  tgtcttttaggctttgttcagt-------------------------------gccagactaat----ga
             Brush-tailed rat  tgtcttttaggctttgttcagtttat-----------------------a-gcaccagactgat----ga
B D                    Rabbit  gacacttcaggctttgtttagtttgc-----------------------a-----aaggctgtt----aa
B D                      Pika  caccattcatgcttttttctttttcttttctttttttttttactatccaa-----aagacagttggtgga
         Cape elephant shrew  ======================================================================
B D                  Hedgehog  ======================================================================
B D                     Shrew  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
B D                       Cow  ======================================================================
            Tibetan antelope  ======================================================================
               Big brown bat  ======================================================================
B D                  Microbat  ======================================================================
        David's myotis (bat)  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
             Star-nosed mole  ======================================================================
B D                     Mouse  ======================================================================
B D                     Panda  ======================================================================
B D                       Dog  ======================================================================
B D                       Rat  ======================================================================
                Prairie vole  ======================================================================
B D           Chinese hamster  ======================================================================
              Golden hamster  ======================================================================
                Killer whale  ======================================================================
B D                   Ferret   ======================================================================
B D                       Cat  ======================================================================
              Pacific walrus  ======================================================================
B D                   Manatee  ======================================================================
B D                  Elephant  ======================================================================
B D                 Armadillo  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
B D                    Tenrec  ======================================================================
B D                  Bushbaby  ======================================================================
B D                     Horse  ======================================================================
            Black flying-fox  ======================================================================
B D          White rhinoceros  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
B D                      Fugu  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                 Tetraodon  ======================================================================
                 Zebra mbuna  ======================================================================
B D                 Zebrafish  ======================================================================
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
    Mexican tetra (cavefish)  ----------------------------------------------------------------------
         Pundamilia nyererei  ======================================================================
       Burton's mouthbreeder  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D           Green seaturtle  ======================================================================
  D       Collared flycatcher  ======================================================================
          Southern platyfish  ======================================================================
B D             X. tropicalis  ======================================================================
B D                Budgerigar  ======================================================================
B D                  Platypus  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
B D                    Lizard  ======================================================================
B D                    Medaka  ======================================================================
B D               Zebra finch  ======================================================================
B D           Squirrel monkey  ======================================================================
  D            Painted turtle  ======================================================================
          Tibetan ground jay  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                   Wallaby  ======================================================================
B D                   Opossum  ======================================================================
  D               Rock pigeon  ======================================================================
B D                   Lamprey  ======================================================================
                    Aardvark  ======================================================================
  D              Mallard duck  ======================================================================
                Weddell seal  ======================================================================
            Cape golden mole  ======================================================================
B D                   Dolphin  ======================================================================
B D                       Pig  ======================================================================
B D                   Megabat  ======================================================================
B D        American alligator  ======================================================================

                        Human  tttaaatggagatttgatggggtccatt
                        Chimp  tttaaatggagatttgatggggtccatt
                      Gorilla  tttaaatggagatttgatggggtccatt
                    Orangutan  tttaaatggagatttgatggggtccatt
                       Gibbon  tttaaatggagatttgatggggtccatt
                       Rhesus  tttagatggagatttgatggggtccatt
          Crab-eating macaque  tttagatggagatttgatggggtccatt
                       Baboon  tttagatggagatttgatggggtccatt
                 Green monkey  tttagatggagatttgatgaggtccatt
                     Marmoset  tttcaatggtgatttgatggggtccatt
           Chinese tree shrew  ttt--atggagatctgatggggtccatt
                     Squirrel  tgtaaatggaaactcgat-agttt--tt
               Naked mole-rat  tttaactggaaaactgat-agatccatt
                   Guinea pig  tttaactggaaacttgat-agatccatt
                   Chinchilla  tttaactggaaacttgat-agatctgtt
             Brush-tailed rat  tttaactggaaacttgat-agatccatt
                       Rabbit  tttaaatggg------------tctatt
                         Pika  tttaaatagggctcttct-gtttctatt
          Cape elephant shrew  ============================
                     Hedgehog  ============================
                        Shrew  ============================
                Domestic goat  ============================
                        Sheep  ============================
                          Cow  ============================
             Tibetan antelope  ============================
                Big brown bat  ============================
                     Microbat  ============================
         David's myotis (bat)  ============================
               Bactrian camel  ============================
                       Alpaca  ============================
              Star-nosed mole  ============================
                        Mouse  ============================
                        Panda  ============================
                          Dog  ============================
                          Rat  ============================
                 Prairie vole  ============================
              Chinese hamster  ============================
               Golden hamster  ============================
                 Killer whale  ============================
                      Ferret   ============================
                          Cat  ============================
               Pacific walrus  ============================
                      Manatee  ============================
                     Elephant  ============================
                    Armadillo  ============================
       Lesser Egyptian jerboa  ============================
                       Tenrec  ============================
                     Bushbaby  ============================
                        Horse  ============================
             Black flying-fox  ============================
             White rhinoceros  ============================
          Princess of Burundi  ============================
                 Nile tilapia  ============================
                         Fugu  ============================
       Yellowbelly pufferfish  ============================
                    Tetraodon  ============================
                  Zebra mbuna  ============================
                    Zebrafish  ============================
                   Coelacanth  ============================
                  Spotted gar  ============================
                  Stickleback  ============================
     Mexican tetra (cavefish)  ----------------------------
          Pundamilia nyererei  ============================
        Burton's mouthbreeder  ============================
     Chinese softshell turtle  ============================
              Green seaturtle  ============================
          Collared flycatcher  ============================
           Southern platyfish  ============================
                X. tropicalis  ============================
                   Budgerigar  ============================
                     Platypus  ============================
          Medium ground finch  ============================
       White-throated sparrow  ============================
             Peregrine falcon  ============================
                 Saker falcon  ============================
                       Turkey  ============================
                      Chicken  ============================
                       Lizard  ============================
                       Medaka  ============================
                  Zebra finch  ============================
              Squirrel monkey  ============================
               Painted turtle  ============================
           Tibetan ground jay  ============================
              Tasmanian devil  ============================
                      Wallaby  ============================
                      Opossum  ============================
                  Rock pigeon  ============================
                      Lamprey  ============================
                     Aardvark  ============================
                 Mallard duck  ============================
                 Weddell seal  ============================
             Cape golden mole  ============================
                      Dolphin  ============================
                          Pig  ============================
                      Megabat  ============================
           American alligator  ============================

Inserts between block 8 and 9 in window
          Chinese tree shrew 264bp

Alignment block 9 of 34 in window, 115251211 - 115251450, 240 bps 
B D                     Human  atcctggc---attatttagattctttagggtgatactaattgcttctacccactctctctggaatgtga
B D                     Chimp  atcctggc---attatttagattctttagggtgatactaattgcttctacccactctctctggaatgtga
B D                   Gorilla  atcctggc---attatttagattctttagggtgatactaattgcttctacccactctctctggaatgtga
B D                 Orangutan  atcctggc---attatttagattctttagggtgatactaattgcttctacccactctctctggaatgtaa
B D                    Gibbon  accctggc---attatttagattctttagggtgatactaattgcttctacccactctctctggaatgtga
B D                    Rhesus  atcctggc---attattttggttcttaagggtgatactaattgcttctatccactctctctggaatgtga
B D       Crab-eating macaque  atcctggc---attattttggttcttaagggtgatactaattgcttctatccactctctctggaatgtga
B D                    Baboon  atcctggc---attatttcgattcttaagggtgatactaattgcttctatccactctctctggaatgtga
B D              Green monkey  atcctggc---attattttgattctttagggtgatactaattgcttctatccactctctctggaatgtga
B D                  Marmoset  atcctggc---atgaattagattctttagggtaatactaattgcttttacccactctctctggaatgtga
           Chinese tree shrew  atcctggc---attctttagatcctatatggtgataggagtttataccaccta--tgctttagaatttaa
B D                  Squirrel  gtcct-ggtgcattctttaggttcattaagctgatattaatttctgtcacccactctttctggaatgtaa
B D            Naked mole-rat  atcct-ga---attctttag---------gatggta---atttctgttacccagtctctctgaaatataa
B D                Guinea pig  attct-ga---attcgttag---------ggtgatactaatttccattacccactttctctgaaatgtca
                   Chinchilla  accct-ga---atgctttag-------------------atttctgttacccactctctgtgaaatgtaa
             Brush-tailed rat  a-tct-ga---attctttag---------gatgatactaatttatgttacccattttctctgaaatgtaa
B D                    Rabbit  attatggc---atcctttatgtcatgtaaggtgatattaatttttgccacccattctctctggagtggaa
B D                      Pika  actgt-gc---attgtgtagactctgtagggtgatagtgatttttgccacctattgtctctggaatggaa
         Cape elephant shrew  ======================================================================
B D                  Hedgehog  ======================================================================
B D                     Shrew  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
B D                       Cow  ======================================================================
            Tibetan antelope  ======================================================================
               Big brown bat  ======================================================================
B D                  Microbat  ======================================================================
        David's myotis (bat)  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
             Star-nosed mole  ======================================================================
B D                     Mouse  ======================================================================
B D                     Panda  ======================================================================
B D                       Dog  ======================================================================
B D                       Rat  ======================================================================
                Prairie vole  ======================================================================
B D           Chinese hamster  ======================================================================
              Golden hamster  ======================================================================
                Killer whale  ======================================================================
B D                   Ferret   ======================================================================
B D                       Cat  ======================================================================
              Pacific walrus  ======================================================================
B D                   Manatee  ======================================================================
B D                  Elephant  ======================================================================
B D                 Armadillo  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
B D                    Tenrec  ======================================================================
B D                  Bushbaby  ======================================================================
B D                     Horse  ======================================================================
            Black flying-fox  ======================================================================
B D          White rhinoceros  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
B D                      Fugu  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                 Tetraodon  ======================================================================
                 Zebra mbuna  ======================================================================
B D                 Zebrafish  ======================================================================
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
    Mexican tetra (cavefish)  ----------------------------------------------------------------------
         Pundamilia nyererei  ======================================================================
       Burton's mouthbreeder  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D           Green seaturtle  ======================================================================
  D       Collared flycatcher  ======================================================================
          Southern platyfish  ======================================================================
B D             X. tropicalis  ======================================================================
B D                Budgerigar  ======================================================================
B D                  Platypus  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
B D                    Lizard  ======================================================================
B D                    Medaka  ======================================================================
B D               Zebra finch  ======================================================================
B D           Squirrel monkey  ======================================================================
  D            Painted turtle  ======================================================================
          Tibetan ground jay  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                   Wallaby  ======================================================================
B D                   Opossum  ======================================================================
  D               Rock pigeon  ======================================================================
B D                   Lamprey  ======================================================================
                    Aardvark  ======================================================================
  D              Mallard duck  ======================================================================
                Weddell seal  ======================================================================
            Cape golden mole  ======================================================================
B D                   Dolphin  ======================================================================
B D                       Pig  ======================================================================
B D                   Megabat  ======================================================================
B D        American alligator  ======================================================================

                        Human  tagtatttt-aaaatttattgtattatccaggg--------gataaaagctcccagaggcttccactgtg
                        Chimp  tagtatttt-aaaatttattgtattatccaggg--------gataaaagctcccagaggcttccactgtg
                      Gorilla  tagtatttt-aaaatttattgtattatccaggg--------gataaaagctcccagaggcttccactgtg
                    Orangutan  tagtatttt-aaaatttatggtattatccaggg--------gataaaagctcccagaggcttccactgtg
                       Gibbon  tagtatctt-aaaatttattgtattatccaggg--------gataaaagctcccagaggcttccactgtg
                       Rhesus  tagtatttt-aacatttattgtgttacccaggg--------cataaaagctcccagaggcctccactgtg
          Crab-eating macaque  tagtatttt-aacatttattgtgttacccaggg--------tataaaagctcccagaggcctccactgtg
                       Baboon  tagtatttt-aaaatttattgtgttacccaggg--------cataaaagctcccagaggcctccactgtg
                 Green monkey  tagtatttt-aaaatttattgtgttacccagag--------gataaaagctcccagaggcctccactgtg
                     Marmoset  tagtatttt-aaaatttattgaattatccaggg--------gataaaagctcccagaggcttccactgcg
           Chinese tree shrew  tgttatttt-aaaatgtattatattgtccata------------------ttctatgg----ccattgtg
                     Squirrel  tatttt----aaaatttattacattgcctcatg--------tatagcactt-ccagaagtttccattgtg
               Naked mole-rat  tactgtttt-aaactttattgtattgtcccaag--------tgtaacagtt-tcagagatttccatcatg
                   Guinea pig  tactattttaaaaatttattatactgtcccagg--------tgtgacagtt-ccagagatttcaagt---
                   Chinchilla  tattattttaaaaaattattatactgtcacagg--------tttaacagtt-ccagaaatctccatcatg
             Brush-tailed rat  tattattttaaaaatttattacactgtcacaag--------tgtgacagtt-ccagaggtttccatcatg
                       Rabbit  tgttatttt-acattttataatattgtctggggaggaggggttcagcagtt-ctagaggcttccactgtg
                         Pika  tgttatttt-aaa-tttatggtatt-tcagggg--------------agtt--------ttcctactgtg
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
                        Shrew  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
                          Cow  ======================================================================
             Tibetan antelope  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
         David's myotis (bat)  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                          Dog  ======================================================================
                          Rat  ======================================================================
                 Prairie vole  ======================================================================
              Chinese hamster  ======================================================================
               Golden hamster  ======================================================================
                 Killer whale  ======================================================================
                      Ferret   ======================================================================
                          Cat  ======================================================================
               Pacific walrus  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
                    Armadillo  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                       Tenrec  ======================================================================
                     Bushbaby  ======================================================================
                        Horse  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Tetraodon  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
          Pundamilia nyererei  ======================================================================
        Burton's mouthbreeder  ======================================================================
     Chinese softshell turtle  ======================================================================
              Green seaturtle  ======================================================================
          Collared flycatcher  ======================================================================
           Southern platyfish  ======================================================================
                X. tropicalis  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                       Lizard  ======================================================================
                       Medaka  ======================================================================
                  Zebra finch  ======================================================================
              Squirrel monkey  ======================================================================
               Painted turtle  ======================================================================
           Tibetan ground jay  ======================================================================
              Tasmanian devil  ======================================================================
                      Wallaby  ======================================================================
                      Opossum  ======================================================================
                  Rock pigeon  ======================================================================
                      Lamprey  ======================================================================
                     Aardvark  ======================================================================
                 Mallard duck  ======================================================================
                 Weddell seal  ======================================================================
             Cape golden mole  ======================================================================
                      Dolphin  ======================================================================
                          Pig  ======================================================================
                      Megabat  ======================================================================
           American alligator  ======================================================================

                        Human  agaaccaaagaccaaatgtggtaggtgttgtgccatttgttaagcctgtttattccaattctatatccag
                        Chimp  agaaccaaagaccaaatgtggtaggtgttgtgccatttgctaagcctgtttattccaattctatatccag
                      Gorilla  agaaccaaagaccaaatgtggtaggtattgtgccatttgctaagtctgtttattccaattctatatccag
                    Orangutan  agaagcaaagaccaaatgtggtaggtgttgtgccatttgctaagtctgttttttccaattctatatccag
                       Gibbon  agaaccaaagatcaaatgtggtaggtgttgtgccatttgctaagtctgtttattccaattctatatccag
                       Rhesus  ataaccaaggaccaaatatggtaggtgttgtgccatttactaagtctgtttattccaattctatatccag
          Crab-eating macaque  ataaccaaggaccaaatatggtaggtgttgtgccatttactaagtctgtttattccaattctatatccag
                       Baboon  ataacgaaggaccaaatatggtaggtgttgtgccatttactaagtctgtttattccaattctatatccag
                 Green monkey  ataaccaaggaccaaatatggtaggtgttgtgccatttactaagtctgtttattccaattctgtatccag
                     Marmoset  ataaccaaggaccaaatgtggtaggcattgtgccatttgccaagagtgattattccaattctatatccag
           Chinese tree shrew  ataaccaagg-ccaaatatggtaggagttgttccattcgccaagtgtgttcattccacttagtcatttag
                     Squirrel  ataatcaaggaccat---------------------ttgccaagcatatgtatttcagtgacttattcag
               Naked mole-rat  ataaacattggccat---------------------------gccatatgtagt--------------aa
                   Guinea pig  gtaactgtgg--------------------------------acgatgtatagt--------------ag
                   Chinchilla  ataactgtgg--------------------------------actatatgtagt--------------aa
             Brush-tailed rat  ataactttgg--------------------------------agcatatgtagt--------------aa
                       Rabbit  ataaccagagaccaagtatggttgaggttgtgctgtttgctaagtatgtttatt----------------
                         Pika  atgactgaagaccaa--------------atgcttcttgctacctatgcatatt----------------
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
                        Shrew  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
                          Cow  ======================================================================
             Tibetan antelope  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
         David's myotis (bat)  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                          Dog  ======================================================================
                          Rat  ======================================================================
                 Prairie vole  ======================================================================
              Chinese hamster  ======================================================================
               Golden hamster  ======================================================================
                 Killer whale  ======================================================================
                      Ferret   ======================================================================
                          Cat  ======================================================================
               Pacific walrus  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
                    Armadillo  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                       Tenrec  ======================================================================
                     Bushbaby  ======================================================================
                        Horse  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Tetraodon  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
          Pundamilia nyererei  ======================================================================
        Burton's mouthbreeder  ======================================================================
     Chinese softshell turtle  ======================================================================
              Green seaturtle  ======================================================================
          Collared flycatcher  ======================================================================
           Southern platyfish  ======================================================================
                X. tropicalis  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                       Lizard  ======================================================================
                       Medaka  ======================================================================
                  Zebra finch  ======================================================================
              Squirrel monkey  ======================================================================
               Painted turtle  ======================================================================
           Tibetan ground jay  ======================================================================
              Tasmanian devil  ======================================================================
                      Wallaby  ======================================================================
                      Opossum  ======================================================================
                  Rock pigeon  ======================================================================
                      Lamprey  ======================================================================
                     Aardvark  ======================================================================
                 Mallard duck  ======================================================================
                 Weddell seal  ======================================================================
             Cape golden mole  ======================================================================
                      Dolphin  ======================================================================
                          Pig  ======================================================================
                      Megabat  ======================================================================
           American alligator  ======================================================================

                        Human  cgactgaagac----------------atgatcactgggtgagtctgtgacccagtgg
                        Chimp  caactgaagac----------------atgatcactgggtgagtctgtgacccagtgg
                      Gorilla  cgactgaagac----------------atgatcactgggtgagtctgtgacccagtgg
                    Orangutan  caactgaagac----------------atgatcactgggtgagtctgtgacccagtgg
                       Gibbon  cgactgaagac----------------atgatcactgggtgagtctgtgacccagtgg
                       Rhesus  cgactgaagac----------------atgatcactgggtgagtctgtgacccagtgg
          Crab-eating macaque  cgactgaagac----------------atgatcactgggtgagtctgtgacccagtgg
                       Baboon  cgactgaagac----------------atgatcactgggtgagtctctgacccagtgg
                 Green monkey  cgac---------------------------tcactgggtgagtctgtgacccagtgg
                     Marmoset  ggactgaagac----------------atgatcact-----agtctgtgacccagtgg
           Chinese tree shrew  ggactgacgac----------------aggatcagtggatgagtctgtgacccggtgg
                     Squirrel  ggactgaagac----------------atgactcctgggtgaatctatgccccagtag
               Naked mole-rat  gaactg--tgt----------------gtgatcgctgggtgggttggtaacacattgg
                   Guinea pig  gagttg--tgc----------------atgagaagtgggtggatctgtgacacagtgg
                   Chinchilla  gagttg--tgt----------------gtgataactaggtgggtctgtgacacagtgg
             Brush-tailed rat  gagttg--tgc----------------atgataactaggtgggtctgtgacacattgg
                       Rabbit  cagtta--tacatctgaa---------atgatcactgagtgggtctgttacccagtga
                         Pika  cagttg--cac-cctgaaggggaagacatcgtcactgagtcggtctgtgacccagtgg
          Cape elephant shrew  ==========================================================
                     Hedgehog  ==========================================================
                        Shrew  ==========================================================
                Domestic goat  ==========================================================
                        Sheep  ==========================================================
                          Cow  ==========================================================
             Tibetan antelope  ==========================================================
                Big brown bat  ==========================================================
                     Microbat  ==========================================================
         David's myotis (bat)  ==========================================================
               Bactrian camel  ==========================================================
                       Alpaca  ==========================================================
              Star-nosed mole  ==========================================================
                        Mouse  ==========================================================
                        Panda  ==========================================================
                          Dog  ==========================================================
                          Rat  ==========================================================
                 Prairie vole  ==========================================================
              Chinese hamster  ==========================================================
               Golden hamster  ==========================================================
                 Killer whale  ==========================================================
                      Ferret   ==========================================================
                          Cat  ==========================================================
               Pacific walrus  ==========================================================
                      Manatee  ==========================================================
                     Elephant  ==========================================================
                    Armadillo  ==========================================================
       Lesser Egyptian jerboa  ==========================================================
                       Tenrec  ==========================================================
                     Bushbaby  ==========================================================
                        Horse  ==========================================================
             Black flying-fox  ==========================================================
             White rhinoceros  ==========================================================
          Princess of Burundi  ==========================================================
                 Nile tilapia  ==========================================================
                         Fugu  ==========================================================
       Yellowbelly pufferfish  ==========================================================
                    Tetraodon  ==========================================================
                  Zebra mbuna  ==========================================================
                    Zebrafish  ==========================================================
                   Coelacanth  ==========================================================
                  Spotted gar  ==========================================================
                  Stickleback  ==========================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------
          Pundamilia nyererei  ==========================================================
        Burton's mouthbreeder  ==========================================================
     Chinese softshell turtle  ==========================================================
              Green seaturtle  ==========================================================
          Collared flycatcher  ==========================================================
           Southern platyfish  ==========================================================
                X. tropicalis  ==========================================================
                   Budgerigar  ==========================================================
                     Platypus  ==========================================================
          Medium ground finch  ==========================================================
       White-throated sparrow  ==========================================================
             Peregrine falcon  ==========================================================
                 Saker falcon  ==========================================================
                       Turkey  ==========================================================
                      Chicken  ==========================================================
                       Lizard  ==========================================================
                       Medaka  ==========================================================
                  Zebra finch  ==========================================================
              Squirrel monkey  ==========================================================
               Painted turtle  ==========================================================
           Tibetan ground jay  ==========================================================
              Tasmanian devil  ==========================================================
                      Wallaby  ==========================================================
                      Opossum  ==========================================================
                  Rock pigeon  ==========================================================
                      Lamprey  ==========================================================
                     Aardvark  ==========================================================
                 Mallard duck  ==========================================================
                 Weddell seal  ==========================================================
             Cape golden mole  ==========================================================
                      Dolphin  ==========================================================
                          Pig  ==========================================================
                      Megabat  ==========================================================
           American alligator  ==========================================================

Inserts between block 9 and 10 in window
B D                     Pika 3762bp

Alignment block 10 of 34 in window, 115251451 - 115251451, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Marmoset  a
           Chinese tree shrew  a
B D                  Squirrel  a
B D            Naked mole-rat  a
B D                Guinea pig  a
                   Chinchilla  a
             Brush-tailed rat  a
B D                    Rabbit  a
         Cape elephant shrew  =
B D                  Hedgehog  =
B D                     Shrew  =
               Domestic goat  =
B D                     Sheep  =
B D                       Cow  =
            Tibetan antelope  =
               Big brown bat  =
B D                  Microbat  =
        David's myotis (bat)  =
              Bactrian camel  =
B D                    Alpaca  =
             Star-nosed mole  =
B D                     Mouse  =
B D                     Panda  =
B D                       Dog  =
B D                       Rat  =
                Prairie vole  =
B D           Chinese hamster  =
              Golden hamster  =
                Killer whale  =
B D                   Ferret   =
B D                       Cat  =
B D                      Pika  =
              Pacific walrus  =
B D                   Manatee  =
B D                  Elephant  =
B D                 Armadillo  =
      Lesser Egyptian jerboa  =
B D                    Tenrec  =
B D                  Bushbaby  =
B D                     Horse  =
            Black flying-fox  =
B D          White rhinoceros  =
         Princess of Burundi  =
B D              Nile tilapia  =
B D                      Fugu  =
      Yellowbelly pufferfish  =
B D                 Tetraodon  =
                 Zebra mbuna  =
B D                 Zebrafish  =
B D                Coelacanth  =
                 Spotted gar  =
B D               Stickleback  =
    Mexican tetra (cavefish)  -
         Pundamilia nyererei  =
       Burton's mouthbreeder  =
  D  Chinese softshell turtle  =
  D           Green seaturtle  =
  D       Collared flycatcher  =
          Southern platyfish  =
B D             X. tropicalis  =
B D                Budgerigar  =
B D                  Platypus  =
B D       Medium ground finch  =
  D    White-throated sparrow  =
  D          Peregrine falcon  =
  D              Saker falcon  =
B D                    Turkey  =
B D                   Chicken  =
B D                    Lizard  =
B D                    Medaka  =
B D               Zebra finch  =
B D           Squirrel monkey  =
  D            Painted turtle  =
          Tibetan ground jay  =
B D           Tasmanian devil  =
B D                   Wallaby  =
B D                   Opossum  =
  D               Rock pigeon  =
B D                   Lamprey  =
                    Aardvark  =
  D              Mallard duck  =
                Weddell seal  =
            Cape golden mole  =
B D                   Dolphin  =
B D                       Pig  =
B D                   Megabat  =
B D        American alligator  =

Inserts between block 10 and 11 in window
B D                   Rabbit 1680bp

Alignment block 11 of 34 in window, 115251452 - 115251476, 25 bps 
B D                     Human  cccattttgagctggaccttgtcca
B D                     Chimp  cccattttgagctggaccttgtcca
B D                   Gorilla  cccattttgagctggaccttgtcca
B D                 Orangutan  cccattttgagctggaccttgtcca
B D                    Gibbon  cccattttgagctggaccttgtcca
B D                    Rhesus  cccattttgagctggaccttgtcca
B D       Crab-eating macaque  cccattttgagctggaccttgtcca
B D                    Baboon  cccattttgagctggaccttgtcca
B D              Green monkey  cccattttgagctggaccttgtcca
B D                  Marmoset  cccattttgagctggaccttgtcca
           Chinese tree shrew  cccatttcgagttagaccttgttca
B D                  Squirrel  cccactttgagcaagaccttttccc
B D            Naked mole-rat  ctcattttgagctggactttgtcca
B D                Guinea pig  cccatgttgacctggaccttgtcca
                   Chinchilla  cccattttgagctggaccttgtgca
             Brush-tailed rat  cccatttcaagctggaccttgtcca
         Cape elephant shrew  =========================
B D                  Hedgehog  =========================
B D                     Shrew  =========================
               Domestic goat  =========================
B D                     Sheep  =========================
B D                       Cow  =========================
            Tibetan antelope  =========================
               Big brown bat  =========================
B D                  Microbat  =========================
        David's myotis (bat)  =========================
              Bactrian camel  =========================
B D                    Alpaca  =========================
             Star-nosed mole  =========================
B D                     Mouse  =========================
B D                     Panda  =========================
B D                       Dog  =========================
B D                       Rat  =========================
                Prairie vole  =========================
B D           Chinese hamster  =========================
              Golden hamster  =========================
                Killer whale  =========================
B D                   Ferret   =========================
B D                       Cat  =========================
B D                      Pika  =========================
              Pacific walrus  =========================
B D                    Rabbit  =========================
B D                   Manatee  =========================
B D                  Elephant  =========================
B D                 Armadillo  =========================
      Lesser Egyptian jerboa  =========================
B D                    Tenrec  =========================
B D                  Bushbaby  =========================
B D                     Horse  =========================
            Black flying-fox  =========================
B D          White rhinoceros  =========================
         Princess of Burundi  =========================
B D              Nile tilapia  =========================
B D                      Fugu  =========================
      Yellowbelly pufferfish  =========================
B D                 Tetraodon  =========================
                 Zebra mbuna  =========================
B D                 Zebrafish  =========================
B D                Coelacanth  =========================
                 Spotted gar  =========================
B D               Stickleback  =========================
    Mexican tetra (cavefish)  -------------------------
         Pundamilia nyererei  =========================
       Burton's mouthbreeder  =========================
  D  Chinese softshell turtle  =========================
  D           Green seaturtle  =========================
  D       Collared flycatcher  =========================
          Southern platyfish  =========================
B D             X. tropicalis  =========================
B D                Budgerigar  =========================
B D                  Platypus  =========================
B D       Medium ground finch  =========================
  D    White-throated sparrow  =========================
  D          Peregrine falcon  =========================
  D              Saker falcon  =========================
B D                    Turkey  =========================
B D                   Chicken  =========================
B D                    Lizard  =========================
B D                    Medaka  =========================
B D               Zebra finch  =========================
B D           Squirrel monkey  =========================
  D            Painted turtle  =========================
          Tibetan ground jay  =========================
B D           Tasmanian devil  =========================
B D                   Wallaby  =========================
B D                   Opossum  =========================
  D               Rock pigeon  =========================
B D                   Lamprey  =========================
                    Aardvark  =========================
  D              Mallard duck  =========================
                Weddell seal  =========================
            Cape golden mole  =========================
B D                   Dolphin  =========================
B D                       Pig  =========================
B D                   Megabat  =========================
B D        American alligator  =========================

Inserts between block 11 and 12 in window
B D      Crab-eating macaque 864bp
B D                   Baboon 1373bp

Alignment block 12 of 34 in window, 115251477 - 115251477, 1 bps 
B D                     Human  g
B D                     Chimp  g
B D                   Gorilla  g
B D                 Orangutan  g
B D                    Gibbon  g
B D                    Rhesus  g
B D              Green monkey  g
B D                  Marmoset  g
           Chinese tree shrew  g
B D                  Squirrel  a
B D            Naked mole-rat  g
B D                Guinea pig  g
                   Chinchilla  g
             Brush-tailed rat  g
         Cape elephant shrew  =
B D                  Hedgehog  =
B D                     Shrew  =
               Domestic goat  =
B D                     Sheep  =
B D                       Cow  =
            Tibetan antelope  =
               Big brown bat  =
B D                  Microbat  =
        David's myotis (bat)  =
              Bactrian camel  =
B D                    Alpaca  =
             Star-nosed mole  =
B D                     Mouse  =
B D                     Panda  =
B D                       Dog  =
B D                       Rat  =
                Prairie vole  =
B D           Chinese hamster  =
              Golden hamster  =
                Killer whale  =
B D                   Ferret   =
B D                       Cat  =
B D                      Pika  =
              Pacific walrus  =
B D                    Rabbit  =
B D                   Manatee  =
B D                  Elephant  =
B D                 Armadillo  =
      Lesser Egyptian jerboa  =
B D                    Tenrec  =
B D                  Bushbaby  =
B D                     Horse  =
            Black flying-fox  =
B D          White rhinoceros  =
         Princess of Burundi  =
B D              Nile tilapia  =
B D                      Fugu  =
      Yellowbelly pufferfish  =
B D                 Tetraodon  =
                 Zebra mbuna  =
B D                 Zebrafish  =
B D                Coelacanth  =
                 Spotted gar  =
B D               Stickleback  =
    Mexican tetra (cavefish)  -
         Pundamilia nyererei  =
       Burton's mouthbreeder  =
  D  Chinese softshell turtle  =
  D           Green seaturtle  =
  D       Collared flycatcher  =
          Southern platyfish  =
B D             X. tropicalis  =
B D                Budgerigar  =
B D                  Platypus  =
B D       Medium ground finch  =
  D    White-throated sparrow  =
  D          Peregrine falcon  =
  D              Saker falcon  =
B D                    Turkey  =
B D                   Chicken  =
B D                    Lizard  =
B D                    Medaka  =
B D               Zebra finch  =
B D           Squirrel monkey  =
  D            Painted turtle  =
          Tibetan ground jay  =
B D           Tasmanian devil  =
B D                   Wallaby  =
B D                   Opossum  =
  D               Rock pigeon  =
B D                   Lamprey  =
                    Aardvark  =
  D              Mallard duck  =
                Weddell seal  =
            Cape golden mole  =
B D                   Dolphin  =
B D                       Pig  =
B D       Crab-eating macaque  =
B D                   Megabat  =
B D                    Baboon  =
B D        American alligator  =

Inserts between block 12 and 13 in window
B D                   Rhesus 1717bp
B D             Green monkey 564bp
          Chinese tree shrew 3787bp
B D                 Squirrel 8bp
B D           Naked mole-rat 5117bp
B D               Guinea pig 3973bp
                  Chinchilla 2368bp
            Brush-tailed rat 4bp

Alignment block 13 of 34 in window, 115251478 - 115251487, 10 bps 
B D                     Human  ctgttttcct
B D                     Chimp  ctgttttcct
B D                   Gorilla  ctgttttcct
B D                 Orangutan  ctgttttcct
B D                    Gibbon  ctgttttcct
B D                    Rhesus  ctgttgtcct
B D       Crab-eating macaque  ctgttgtcct
B D                    Baboon  ctgttgtcct
B D              Green monkey  ctgttgtcct
B D                  Marmoset  --gattccat
B D                  Squirrel  ttatttcctt
             Brush-tailed rat  ccgttttttt
         Cape elephant shrew  ==========
B D                  Hedgehog  ==========
B D                     Shrew  ==========
               Domestic goat  ==========
B D                     Sheep  ==========
B D                       Cow  ==========
            Tibetan antelope  ==========
               Big brown bat  ==========
B D                  Microbat  ==========
        David's myotis (bat)  ==========
              Bactrian camel  ==========
B D                    Alpaca  ==========
             Star-nosed mole  ==========
B D                     Mouse  ==========
B D                     Panda  ==========
B D                       Dog  ==========
B D                       Rat  ==========
                Prairie vole  ==========
B D           Chinese hamster  ==========
              Golden hamster  ==========
                Killer whale  ==========
B D                   Ferret   ==========
B D                       Cat  ==========
          Chinese tree shrew  ==========
B D                      Pika  ==========
              Pacific walrus  ==========
B D            Naked mole-rat  ==========
B D                    Rabbit  ==========
                  Chinchilla  ==========
B D                Guinea pig  ==========
B D                   Manatee  ==========
B D                  Elephant  ==========
B D                 Armadillo  ==========
      Lesser Egyptian jerboa  ==========
B D                    Tenrec  ==========
B D                  Bushbaby  ==========
B D                     Horse  ==========
            Black flying-fox  ==========
B D          White rhinoceros  ==========
         Princess of Burundi  ==========
B D              Nile tilapia  ==========
B D                      Fugu  ==========
      Yellowbelly pufferfish  ==========
B D                 Tetraodon  ==========
                 Zebra mbuna  ==========
B D                 Zebrafish  ==========
B D                Coelacanth  ==========
                 Spotted gar  ==========
B D               Stickleback  ==========
    Mexican tetra (cavefish)  ----------
         Pundamilia nyererei  ==========
       Burton's mouthbreeder  ==========
  D  Chinese softshell turtle  ==========
  D           Green seaturtle  ==========
  D       Collared flycatcher  ==========
          Southern platyfish  ==========
B D             X. tropicalis  ==========
B D                Budgerigar  ==========
B D                  Platypus  ==========
B D       Medium ground finch  ==========
  D    White-throated sparrow  ==========
  D          Peregrine falcon  ==========
  D              Saker falcon  ==========
B D                    Turkey  ==========
B D                   Chicken  ==========
B D                    Lizard  ==========
B D                    Medaka  ==========
B D               Zebra finch  ==========
B D           Squirrel monkey  ==========
  D            Painted turtle  ==========
          Tibetan ground jay  ==========
B D           Tasmanian devil  ==========
B D                   Wallaby  ==========
B D                   Opossum  ==========
  D               Rock pigeon  ==========
B D                   Lamprey  ==========
                    Aardvark  ==========
  D              Mallard duck  ==========
                Weddell seal  ==========
            Cape golden mole  ==========
B D                   Dolphin  ==========
B D                       Pig  ==========
B D                   Megabat  ==========
B D        American alligator  ==========

Inserts between block 13 and 14 in window
            Brush-tailed rat 769bp

Alignment block 14 of 34 in window, 115251488 - 115251495, 8 bps 
B D                     Human  attgtctc
B D                     Chimp  attgtctc
B D                   Gorilla  attgtctc
B D                 Orangutan  attgtctc
B D                    Gibbon  attgtctc
B D                    Rhesus  gttgtttc
B D       Crab-eating macaque  gttgtttc
B D                    Baboon  gttgtttc
B D              Green monkey  gttgtttc
B D                  Marmoset  ttttttcc
B D                  Squirrel  attttcat
         Cape elephant shrew  ========
B D                  Hedgehog  ========
B D                     Shrew  ========
               Domestic goat  ========
B D                     Sheep  ========
B D                       Cow  ========
            Tibetan antelope  ========
               Big brown bat  ========
B D                  Microbat  ========
        David's myotis (bat)  ========
              Bactrian camel  ========
B D                    Alpaca  ========
             Star-nosed mole  ========
B D                     Mouse  ========
B D                     Panda  ========
B D                       Dog  ========
B D                       Rat  ========
                Prairie vole  ========
B D           Chinese hamster  ========
              Golden hamster  ========
                Killer whale  ========
B D                   Ferret   ========
B D                       Cat  ========
          Chinese tree shrew  ========
B D                      Pika  ========
              Pacific walrus  ========
B D            Naked mole-rat  ========
B D                    Rabbit  ========
                  Chinchilla  ========
B D                Guinea pig  ========
B D                   Manatee  ========
B D                  Elephant  ========
B D                 Armadillo  ========
      Lesser Egyptian jerboa  ========
            Brush-tailed rat  ========
B D                    Tenrec  ========
B D                  Bushbaby  ========
B D                     Horse  ========
            Black flying-fox  ========
B D          White rhinoceros  ========
         Princess of Burundi  ========
B D              Nile tilapia  ========
B D                      Fugu  ========
      Yellowbelly pufferfish  ========
B D                 Tetraodon  ========
                 Zebra mbuna  ========
B D                 Zebrafish  ========
B D                Coelacanth  ========
                 Spotted gar  ========
B D               Stickleback  ========
    Mexican tetra (cavefish)  --------
         Pundamilia nyererei  ========
       Burton's mouthbreeder  ========
  D  Chinese softshell turtle  ========
  D           Green seaturtle  ========
  D       Collared flycatcher  ========
          Southern platyfish  ========
B D             X. tropicalis  ========
B D                Budgerigar  ========
B D                  Platypus  ========
B D       Medium ground finch  ========
  D    White-throated sparrow  ========
  D          Peregrine falcon  ========
  D              Saker falcon  ========
B D                    Turkey  ========
B D                   Chicken  ========
B D                    Lizard  ========
B D                    Medaka  ========
B D               Zebra finch  ========
B D           Squirrel monkey  ========
  D            Painted turtle  ========
          Tibetan ground jay  ========
B D           Tasmanian devil  ========
B D                   Wallaby  ========
B D                   Opossum  ========
  D               Rock pigeon  ========
B D                   Lamprey  ========
                    Aardvark  ========
  D              Mallard duck  ========
                Weddell seal  ========
            Cape golden mole  ========
B D                   Dolphin  ========
B D                       Pig  ========
B D                   Megabat  ========
B D        American alligator  ========

Alignment block 15 of 34 in window, 115251496 - 115251500, 5 bps 
B D                     Human  ccatc
B D                     Chimp  ccatc
B D                   Gorilla  ccatc
B D                 Orangutan  ccatc
B D                    Gibbon  ccatc
B D                    Rhesus  ccatc
B D       Crab-eating macaque  ccatc
B D                    Baboon  ccatc
B D              Green monkey  ccatc
B D                  Marmoset  tcatc
B D                  Squirrel  gtatc
             Brush-tailed rat  ccatt
         Cape elephant shrew  =====
B D                  Hedgehog  =====
B D                     Shrew  =====
               Domestic goat  =====
B D                     Sheep  =====
B D                       Cow  =====
            Tibetan antelope  =====
               Big brown bat  =====
B D                  Microbat  =====
        David's myotis (bat)  =====
              Bactrian camel  =====
B D                    Alpaca  =====
             Star-nosed mole  =====
B D                     Mouse  =====
B D                     Panda  =====
B D                       Dog  =====
B D                       Rat  =====
                Prairie vole  =====
B D           Chinese hamster  =====
              Golden hamster  =====
                Killer whale  =====
B D                   Ferret   =====
B D                       Cat  =====
          Chinese tree shrew  =====
B D                      Pika  =====
              Pacific walrus  =====
B D            Naked mole-rat  =====
B D                    Rabbit  =====
                  Chinchilla  =====
B D                Guinea pig  =====
B D                   Manatee  =====
B D                  Elephant  =====
B D                 Armadillo  =====
      Lesser Egyptian jerboa  =====
B D                    Tenrec  =====
B D                  Bushbaby  =====
B D                     Horse  =====
            Black flying-fox  =====
B D          White rhinoceros  =====
         Princess of Burundi  =====
B D              Nile tilapia  =====
B D                      Fugu  =====
      Yellowbelly pufferfish  =====
B D                 Tetraodon  =====
                 Zebra mbuna  =====
B D                 Zebrafish  =====
B D                Coelacanth  =====
                 Spotted gar  =====
B D               Stickleback  =====
    Mexican tetra (cavefish)  -----
         Pundamilia nyererei  =====
       Burton's mouthbreeder  =====
  D  Chinese softshell turtle  =====
  D           Green seaturtle  =====
  D       Collared flycatcher  =====
          Southern platyfish  =====
B D             X. tropicalis  =====
B D                Budgerigar  =====
B D                  Platypus  =====
B D       Medium ground finch  =====
  D    White-throated sparrow  =====
  D          Peregrine falcon  =====
  D              Saker falcon  =====
B D                    Turkey  =====
B D                   Chicken  =====
B D                    Lizard  =====
B D                    Medaka  =====
B D               Zebra finch  =====
B D           Squirrel monkey  =====
  D            Painted turtle  =====
          Tibetan ground jay  =====
B D           Tasmanian devil  =====
B D                   Wallaby  =====
B D                   Opossum  =====
  D               Rock pigeon  =====
B D                   Lamprey  =====
                    Aardvark  =====
  D              Mallard duck  =====
                Weddell seal  =====
            Cape golden mole  =====
B D                   Dolphin  =====
B D                       Pig  =====
B D                   Megabat  =====
B D        American alligator  =====

Inserts between block 15 and 16 in window
B D                 Marmoset 1788bp

Alignment block 16 of 34 in window, 115251501 - 115251504, 4 bps 
B D                     Human  attg
B D                     Chimp  attt
B D                   Gorilla  attg
B D                 Orangutan  attg
B D                    Gibbon  attg
B D                    Rhesus  attg
B D       Crab-eating macaque  attg
B D                    Baboon  attg
B D              Green monkey  attg
B D                  Squirrel  cctg
             Brush-tailed rat  cctg
         Cape elephant shrew  ====
B D                  Hedgehog  ====
B D                     Shrew  ====
               Domestic goat  ====
B D                     Sheep  ====
B D                       Cow  ====
            Tibetan antelope  ====
               Big brown bat  ====
B D                  Microbat  ====
        David's myotis (bat)  ====
              Bactrian camel  ====
B D                    Alpaca  ====
             Star-nosed mole  ====
B D                     Mouse  ====
B D                     Panda  ====
B D                       Dog  ====
B D                       Rat  ====
                Prairie vole  ====
B D           Chinese hamster  ====
              Golden hamster  ====
                Killer whale  ====
B D                   Ferret   ====
B D                       Cat  ====
          Chinese tree shrew  ====
B D                      Pika  ====
              Pacific walrus  ====
B D            Naked mole-rat  ====
B D                    Rabbit  ====
                  Chinchilla  ====
B D                Guinea pig  ====
B D                   Manatee  ====
B D                  Elephant  ====
B D                 Armadillo  ====
      Lesser Egyptian jerboa  ====
B D                    Tenrec  ====
B D                  Bushbaby  ====
B D                     Horse  ====
            Black flying-fox  ====
B D          White rhinoceros  ====
         Princess of Burundi  ====
B D              Nile tilapia  ====
B D                      Fugu  ====
      Yellowbelly pufferfish  ====
B D                 Tetraodon  ====
                 Zebra mbuna  ====
B D                 Zebrafish  ====
B D                Coelacanth  ====
                 Spotted gar  ====
B D               Stickleback  ====
    Mexican tetra (cavefish)  ----
         Pundamilia nyererei  ====
       Burton's mouthbreeder  ====
  D  Chinese softshell turtle  ====
  D           Green seaturtle  ====
  D       Collared flycatcher  ====
          Southern platyfish  ====
B D             X. tropicalis  ====
B D                Budgerigar  ====
B D                  Platypus  ====
B D       Medium ground finch  ====
  D    White-throated sparrow  ====
  D          Peregrine falcon  ====
  D              Saker falcon  ====
B D                    Turkey  ====
B D                   Chicken  ====
B D                    Lizard  ====
B D                    Medaka  ====
B D               Zebra finch  ====
B D           Squirrel monkey  ====
  D            Painted turtle  ====
          Tibetan ground jay  ====
B D           Tasmanian devil  ====
B D                   Wallaby  ====
B D                   Opossum  ====
  D               Rock pigeon  ====
B D                   Lamprey  ====
                    Aardvark  ====
  D              Mallard duck  ====
                Weddell seal  ====
            Cape golden mole  ====
B D                   Dolphin  ====
B D                       Pig  ====
B D                   Megabat  ====
B D        American alligator  ====
B D                  Marmoset  ====

Inserts between block 16 and 17 in window
B D                 Squirrel 1037bp

Alignment block 17 of 34 in window, 115251505 - 115251966, 462 bps 
B D                     Human  ggctaagttctgttacagttgctcctactatcagctttggtctatggaggaaagccacgaaattcttagt
B D                     Chimp  ggctcagttctgttacagttgctcctatcatcagctttggtctatggaggaaagccacgaaattcttagt
B D                   Gorilla  ggctcagttctgttacagttgctcctaccatcagctttggtctatggaggaaagccacgaaattcttagt
B D                 Orangutan  ggctcagttctattacagtttctcctaccatcagctttggtctatggaggaaagccacgaaattcttagt
B D                    Gibbon  ggctcagttctgttacagtttctccta-catcatctttggtctatggaggaaagccacgaaattcttagt
B D                    Rhesus  ggctcagttctgttacagtttctcttaccatcagctttggtctatggaggagacccacgaaattcttagt
B D       Crab-eating macaque  ggctcagttctgttacagtttctcttaccatcagctttggtctatggaggagacccacgaaattcttagt
B D                    Baboon  ggctcagttctgttacagtttctcttaccatcagctttggtctatggaggagacccacgaaattcttagt
B D              Green monkey  ggctcagttctgttacagtttcttctatcatcagctttgttctatggaggagacccacgaaattcttagt
             Brush-tailed rat  agtttatttgtgctgcaatt-ctcctgccatcaactctggcctatagaggagaactattaaatgcataat
         Cape elephant shrew  ======================================================================
B D                  Hedgehog  ======================================================================
B D                     Shrew  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
B D                       Cow  ======================================================================
            Tibetan antelope  ======================================================================
               Big brown bat  ======================================================================
B D                  Microbat  ======================================================================
        David's myotis (bat)  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
             Star-nosed mole  ======================================================================
B D                     Mouse  ======================================================================
B D                     Panda  ======================================================================
B D                       Dog  ======================================================================
B D                       Rat  ======================================================================
                Prairie vole  ======================================================================
B D           Chinese hamster  ======================================================================
              Golden hamster  ======================================================================
                Killer whale  ======================================================================
B D                   Ferret   ======================================================================
B D                  Squirrel  ======================================================================
B D                       Cat  ======================================================================
          Chinese tree shrew  ======================================================================
B D                      Pika  ======================================================================
              Pacific walrus  ======================================================================
B D            Naked mole-rat  ======================================================================
B D                    Rabbit  ======================================================================
                  Chinchilla  ======================================================================
B D                Guinea pig  ======================================================================
B D                   Manatee  ======================================================================
B D                  Elephant  ======================================================================
B D                 Armadillo  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
B D                    Tenrec  ======================================================================
B D                  Bushbaby  ======================================================================
B D                     Horse  ======================================================================
            Black flying-fox  ======================================================================
B D          White rhinoceros  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
B D                      Fugu  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                 Tetraodon  ======================================================================
                 Zebra mbuna  ======================================================================
B D                 Zebrafish  ======================================================================
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
    Mexican tetra (cavefish)  ----------------------------------------------------------------------
         Pundamilia nyererei  ======================================================================
       Burton's mouthbreeder  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D           Green seaturtle  ======================================================================
  D       Collared flycatcher  ======================================================================
          Southern platyfish  ======================================================================
B D             X. tropicalis  ======================================================================
B D                Budgerigar  ======================================================================
B D                  Platypus  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
B D                    Lizard  ======================================================================
B D                    Medaka  ======================================================================
B D               Zebra finch  ======================================================================
B D           Squirrel monkey  ======================================================================
  D            Painted turtle  ======================================================================
          Tibetan ground jay  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                   Wallaby  ======================================================================
B D                   Opossum  ======================================================================
  D               Rock pigeon  ======================================================================
B D                   Lamprey  ======================================================================
                    Aardvark  ======================================================================
  D              Mallard duck  ======================================================================
                Weddell seal  ======================================================================
            Cape golden mole  ======================================================================
B D                   Dolphin  ======================================================================
B D                       Pig  ======================================================================
B D                   Megabat  ======================================================================
B D        American alligator  ======================================================================
B D                  Marmoset  ======================================================================

                        Human  gatgc----tagtgtctctcccaccatcatattcttcatggctttggtaattggcatatcctctggccct
                        Chimp  gatgc----tagtgtctctcccaccatcatattcttcatggctttggtaattggcatatcctctggccct
                      Gorilla  gatgc----tagtgtctctcccaccatcatattcttcatggctttggtaattggcatatcctctggccct
                    Orangutan  gatgc----tagtttctctcccaccatcatattcttcatggctttggtaattggcatatcctctggccct
                       Gibbon  gatgc----tagtgtctctcccaccatcatattcttcatggctttggtaattggcatatcctctggccct
                       Rhesus  ggtgcttcttagtgtctctcccaccatcatattcttcatggctttggtaattgtcatatcatctggccct
          Crab-eating macaque  gatgctacttagtgtctctcccaccatcatattcttcatggctttggtaattgtcatatcatctggccct
                       Baboon  gatgctacttagtgtctctcccaccatcatattcttcatggctttggtaattgtcatatcatctggccct
                 Green monkey  gatgctagttggtgtctctcccaccatcatattcttcatggctttggtaattgtcatatcatctggccct
             Brush-tailed rat  gaggctgtctactgtccct-tcatcattacatgcttcatagctctggtaaatgcaaactc--ttggcttt
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
                        Shrew  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
                          Cow  ======================================================================
             Tibetan antelope  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
         David's myotis (bat)  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                          Dog  ======================================================================
                          Rat  ======================================================================
                 Prairie vole  ======================================================================
              Chinese hamster  ======================================================================
               Golden hamster  ======================================================================
                 Killer whale  ======================================================================
                      Ferret   ======================================================================
                     Squirrel  ======================================================================
                          Cat  ======================================================================
           Chinese tree shrew  ======================================================================
                         Pika  ======================================================================
               Pacific walrus  ======================================================================
               Naked mole-rat  ======================================================================
                       Rabbit  ======================================================================
                   Chinchilla  ======================================================================
                   Guinea pig  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
                    Armadillo  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                       Tenrec  ======================================================================
                     Bushbaby  ======================================================================
                        Horse  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Tetraodon  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
          Pundamilia nyererei  ======================================================================
        Burton's mouthbreeder  ======================================================================
     Chinese softshell turtle  ======================================================================
              Green seaturtle  ======================================================================
          Collared flycatcher  ======================================================================
           Southern platyfish  ======================================================================
                X. tropicalis  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                       Lizard  ======================================================================
                       Medaka  ======================================================================
                  Zebra finch  ======================================================================
              Squirrel monkey  ======================================================================
               Painted turtle  ======================================================================
           Tibetan ground jay  ======================================================================
              Tasmanian devil  ======================================================================
                      Wallaby  ======================================================================
                      Opossum  ======================================================================
                  Rock pigeon  ======================================================================
                      Lamprey  ======================================================================
                     Aardvark  ======================================================================
                 Mallard duck  ======================================================================
                 Weddell seal  ======================================================================
             Cape golden mole  ======================================================================
                      Dolphin  ======================================================================
                          Pig  ======================================================================
                      Megabat  ======================================================================
           American alligator  ======================================================================
                     Marmoset  ======================================================================

                        Human  ttccatagataaaatagcctggtgggttttctggcatcacata---------------------------
                        Chimp  ttccatagataaaatggcctggtgggttttctggcatcacgta---------------------------
                      Gorilla  ttccatagataaaatggcctggtgggttttctggcatcacata---------------------------
                    Orangutan  ttccatagataaaatggcctggtgggttttctggcatcacata---------------------------
                       Gibbon  ttccatagataaaatggcctggtgggttttctggcatcacata---------------------------
                       Rhesus  ttccgtagataaaatggcctggtgggttttctggcattacaat---------------------------
          Crab-eating macaque  ttccgtagataaaatggcctggtgggttttctggcattacaat---------------------------
                       Baboon  ttccgtagataaaatggcctggtgggttttctggcattacaat---------------------------
                 Green monkey  ttccataggtaaaatggcctggtgggttttctggcattatata---------------------------
             Brush-tailed rat  ctcagtagaattagtgacctgatggattttctggcattgcatacactgtgtagctaccccagaatgccac
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
                        Shrew  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
                          Cow  ======================================================================
             Tibetan antelope  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
         David's myotis (bat)  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                          Dog  ======================================================================
                          Rat  ======================================================================
                 Prairie vole  ======================================================================
              Chinese hamster  ======================================================================
               Golden hamster  ======================================================================
                 Killer whale  ======================================================================
                      Ferret   ======================================================================
                     Squirrel  ======================================================================
                          Cat  ======================================================================
           Chinese tree shrew  ======================================================================
                         Pika  ======================================================================
               Pacific walrus  ======================================================================
               Naked mole-rat  ======================================================================
                       Rabbit  ======================================================================
                   Chinchilla  ======================================================================
                   Guinea pig  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
                    Armadillo  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                       Tenrec  ======================================================================
                     Bushbaby  ======================================================================
                        Horse  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Tetraodon  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
          Pundamilia nyererei  ======================================================================
        Burton's mouthbreeder  ======================================================================
     Chinese softshell turtle  ======================================================================
              Green seaturtle  ======================================================================
          Collared flycatcher  ======================================================================
           Southern platyfish  ======================================================================
                X. tropicalis  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                       Lizard  ======================================================================
                       Medaka  ======================================================================
                  Zebra finch  ======================================================================
              Squirrel monkey  ======================================================================
               Painted turtle  ======================================================================
           Tibetan ground jay  ======================================================================
              Tasmanian devil  ======================================================================
                      Wallaby  ======================================================================
                      Opossum  ======================================================================
                  Rock pigeon  ======================================================================
                      Lamprey  ======================================================================
                     Aardvark  ======================================================================
                 Mallard duck  ======================================================================
                 Weddell seal  ======================================================================
             Cape golden mole  ======================================================================
                      Dolphin  ======================================================================
                          Pig  ======================================================================
                      Megabat  ======================================================================
           American alligator  ======================================================================
                     Marmoset  ======================================================================

                        Human  -gtgta-------------------------------------------------------------ttg
                        Chimp  -gtgta-------------------------------------------------------------ttg
                      Gorilla  -gtgta-------------------------------------------------------------tcg
                    Orangutan  -gtata-------------------------------------------------------------tcg
                       Gibbon  -gtata-------------------------------------------------------------tcg
                       Rhesus  -gtata-------------------------------------------------------------ttg
          Crab-eating macaque  -gtata-------------------------------------------------------------ttg
                       Baboon  -gtata-------------------------------------------------------------ttg
                 Green monkey  -gtata-------------------------------------------------------------ttg
             Brush-tailed rat  tgtatagccactcaaacctgctgagttattccattttattggcatacatagctgatttgccactggttta
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
                        Shrew  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
                          Cow  ======================================================================
             Tibetan antelope  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
         David's myotis (bat)  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                          Dog  ======================================================================
                          Rat  ======================================================================
                 Prairie vole  ======================================================================
              Chinese hamster  ======================================================================
               Golden hamster  ======================================================================
                 Killer whale  ======================================================================
                      Ferret   ======================================================================
                     Squirrel  ======================================================================
                          Cat  ======================================================================
           Chinese tree shrew  ======================================================================
                         Pika  ======================================================================
               Pacific walrus  ======================================================================
               Naked mole-rat  ======================================================================
                       Rabbit  ======================================================================
                   Chinchilla  ======================================================================
                   Guinea pig  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
                    Armadillo  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                       Tenrec  ======================================================================
                     Bushbaby  ======================================================================
                        Horse  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Tetraodon  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
          Pundamilia nyererei  ======================================================================
        Burton's mouthbreeder  ======================================================================
     Chinese softshell turtle  ======================================================================
              Green seaturtle  ======================================================================
          Collared flycatcher  ======================================================================
           Southern platyfish  ======================================================================
                X. tropicalis  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                       Lizard  ======================================================================
                       Medaka  ======================================================================
                  Zebra finch  ======================================================================
              Squirrel monkey  ======================================================================
               Painted turtle  ======================================================================
           Tibetan ground jay  ======================================================================
              Tasmanian devil  ======================================================================
                      Wallaby  ======================================================================
                      Opossum  ======================================================================
                  Rock pigeon  ======================================================================
                      Lamprey  ======================================================================
                     Aardvark  ======================================================================
                 Mallard duck  ======================================================================
                 Weddell seal  ======================================================================
             Cape golden mole  ======================================================================
                      Dolphin  ======================================================================
                          Pig  ======================================================================
                      Megabat  ======================================================================
           American alligator  ======================================================================
                     Marmoset  ======================================================================

                        Human  acttcagca------------------------------tgtgcacatttttaga---cttttaatcact
                        Chimp  acttcagca------------------------------tgtgcacatttttaga---cttttaatcact
                      Gorilla  acttcagca------------------------------tgtgcacatttttaga---cttttaatcact
                    Orangutan  acttcagca------------------------------tgtgcacatttttaga---cttttaatcact
                       Gibbon  acttcagca------------------------------tgtgcacatttttaga---cttttaatcact
                       Rhesus  gtttcagca------------------------------tgtgcacatttttaga---cttttaatcact
          Crab-eating macaque  gtttcagca------------------------------tgtgcacatttttaga---cttttaatcact
                       Baboon  gtttcagca------------------------------tgtgcacatttttaga---cttttaatcact
                 Green monkey  gtttcagca------------------------------tgtgcacatttttaga---cttttaatcact
             Brush-tailed rat  attttagcaattggataatgggcatcttgtcatgggctgtgttcacatttctagattttttttaatccct
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
                        Shrew  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
                          Cow  ======================================================================
             Tibetan antelope  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
         David's myotis (bat)  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                          Dog  ======================================================================
                          Rat  ======================================================================
                 Prairie vole  ======================================================================
              Chinese hamster  ======================================================================
               Golden hamster  ======================================================================
                 Killer whale  ======================================================================
                      Ferret   ======================================================================
                     Squirrel  ======================================================================
                          Cat  ======================================================================
           Chinese tree shrew  ======================================================================
                         Pika  ======================================================================
               Pacific walrus  ======================================================================
               Naked mole-rat  ======================================================================
                       Rabbit  ======================================================================
                   Chinchilla  ======================================================================
                   Guinea pig  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
                    Armadillo  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                       Tenrec  ======================================================================
                     Bushbaby  ======================================================================
                        Horse  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Tetraodon  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
          Pundamilia nyererei  ======================================================================
        Burton's mouthbreeder  ======================================================================
     Chinese softshell turtle  ======================================================================
              Green seaturtle  ======================================================================
          Collared flycatcher  ======================================================================
           Southern platyfish  ======================================================================
                X. tropicalis  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                       Lizard  ======================================================================
                       Medaka  ======================================================================
                  Zebra finch  ======================================================================
              Squirrel monkey  ======================================================================
               Painted turtle  ======================================================================
           Tibetan ground jay  ======================================================================
              Tasmanian devil  ======================================================================
                      Wallaby  ======================================================================
                      Opossum  ======================================================================
                  Rock pigeon  ======================================================================
                      Lamprey  ======================================================================
                     Aardvark  ======================================================================
                 Mallard duck  ======================================================================
                 Weddell seal  ======================================================================
             Cape golden mole  ======================================================================
                      Dolphin  ======================================================================
                          Pig  ======================================================================
                      Megabat  ======================================================================
           American alligator  ======================================================================
                     Marmoset  ======================================================================

                        Human  gcctttactgtttgctatggcagttccggcattttgaccttacttagcatggg-tatacttttcatgttt
                        Chimp  gcctttactgtttgctatggcagttccggcattttgaccttacttagcatggggtatacttttcatgttt
                      Gorilla  gcctttactgtttgctatggcagttccggcattttgaccttacttagcatgac-catacttttcatgttt
                    Orangutan  gcctttactgttggctatggcagttccggcattttgaccttacttagcatggggtatatttttcatgttt
                       Gibbon  gcctttactgtttgctatggcagttctggcattttgaccttacttagcatggg-tatatttttcatgttt
                       Rhesus  gcctttactgtttgctatggcagttccggcattttgaccttacttagcatggggtatatttttcatgttt
          Crab-eating macaque  gcctttactgtttgctatggcagttccggcattttgaccttacttagcatggggtatatttttcatgttt
                       Baboon  gcctttactgtttgctatggcagttccggcattttgaccttacttagcatggggtatatttttcatgttt
                 Green monkey  gcctttactgtttgctatggcagttccggcattttgaccttacttagcatggggtatattttt-------
             Brush-tailed rat  aattttac--tctgctgtggaagttctggcattttgacttcactgagttttggctgtatttttc------
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
                        Shrew  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
                          Cow  ======================================================================
             Tibetan antelope  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
         David's myotis (bat)  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                          Dog  ======================================================================
                          Rat  ======================================================================
                 Prairie vole  ======================================================================
              Chinese hamster  ======================================================================
               Golden hamster  ======================================================================
                 Killer whale  ======================================================================
                      Ferret   ======================================================================
                     Squirrel  ======================================================================
                          Cat  ======================================================================
           Chinese tree shrew  ======================================================================
                         Pika  ======================================================================
               Pacific walrus  ======================================================================
               Naked mole-rat  ======================================================================
                       Rabbit  ======================================================================
                   Chinchilla  ======================================================================
                   Guinea pig  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
                    Armadillo  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                       Tenrec  ======================================================================
                     Bushbaby  ======================================================================
                        Horse  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Tetraodon  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
          Pundamilia nyererei  ======================================================================
        Burton's mouthbreeder  ======================================================================
     Chinese softshell turtle  ======================================================================
              Green seaturtle  ======================================================================
          Collared flycatcher  ======================================================================
           Southern platyfish  ======================================================================
                X. tropicalis  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                       Lizard  ======================================================================
                       Medaka  ======================================================================
                  Zebra finch  ======================================================================
              Squirrel monkey  ======================================================================
               Painted turtle  ======================================================================
           Tibetan ground jay  ======================================================================
              Tasmanian devil  ======================================================================
                      Wallaby  ======================================================================
                      Opossum  ======================================================================
                  Rock pigeon  ======================================================================
                      Lamprey  ======================================================================
                     Aardvark  ======================================================================
                 Mallard duck  ======================================================================
                 Weddell seal  ======================================================================
             Cape golden mole  ======================================================================
                      Dolphin  ======================================================================
                          Pig  ======================================================================
                      Megabat  ======================================================================
           American alligator  ======================================================================
                     Marmoset  ======================================================================

                        Human  tacatgtttctaagagtcatccagatagcaagtgaacatcacctcttgtggcatccttgtcagaaaggaa
                        Chimp  tacatgtttctaagagtcatccagatagcaagtgaacatcacctcttgtggcatccttgtcagaaaggaa
                      Gorilla  tacatatttctaggagtcatccagatagcaactgaacatcacctcttgtggcatccttgtcagaaaggaa
                    Orangutan  tacatgtttctaggagtcatccagatagcaagttaacatcacctcttgtggcatccttgtcagaaaggga
                       Gibbon  tacatgtttctaggagtcatccagatagcaagttaacatcacctcttgtggcatccttgtcagaaaggga
                       Rhesus  tacatgtttctaggactcatccagacagcaagttaacatcacctcttgtggcatccttgtcagaaaggta
          Crab-eating macaque  tacatgtttctaggactcatccagacagcaagttaacatcacctcttgtggcatccttgtcagaaaggta
                       Baboon  tacatgtttctaggactcatccagacagcaagttaacatcacctcttgtggcatccttgtcagaaaggta
                 Green monkey  --catgtttctaggagtcatccagatagcaagttaacatcacctcttgtggcatccttgtcagaaaggta
             Brush-tailed rat  --catatttgtatgaattactcaaacagcaactttg---tacatctcctggaatccttgtcaaaggagta
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
                        Shrew  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
                          Cow  ======================================================================
             Tibetan antelope  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
         David's myotis (bat)  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                          Dog  ======================================================================
                          Rat  ======================================================================
                 Prairie vole  ======================================================================
              Chinese hamster  ======================================================================
               Golden hamster  ======================================================================
                 Killer whale  ======================================================================
                      Ferret   ======================================================================
                     Squirrel  ======================================================================
                          Cat  ======================================================================
           Chinese tree shrew  ======================================================================
                         Pika  ======================================================================
               Pacific walrus  ======================================================================
               Naked mole-rat  ======================================================================
                       Rabbit  ======================================================================
                   Chinchilla  ======================================================================
                   Guinea pig  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
                    Armadillo  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                       Tenrec  ======================================================================
                     Bushbaby  ======================================================================
                        Horse  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Tetraodon  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
          Pundamilia nyererei  ======================================================================
        Burton's mouthbreeder  ======================================================================
     Chinese softshell turtle  ======================================================================
              Green seaturtle  ======================================================================
          Collared flycatcher  ======================================================================
           Southern platyfish  ======================================================================
                X. tropicalis  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                       Lizard  ======================================================================
                       Medaka  ======================================================================
                  Zebra finch  ======================================================================
              Squirrel monkey  ======================================================================
               Painted turtle  ======================================================================
           Tibetan ground jay  ======================================================================
              Tasmanian devil  ======================================================================
                      Wallaby  ======================================================================
                      Opossum  ======================================================================
                  Rock pigeon  ======================================================================
                      Lamprey  ======================================================================
                     Aardvark  ======================================================================
                 Mallard duck  ======================================================================
                 Weddell seal  ======================================================================
             Cape golden mole  ======================================================================
                      Dolphin  ======================================================================
                          Pig  ======================================================================
                      Megabat  ======================================================================
           American alligator  ======================================================================
                     Marmoset  ======================================================================

                        Human  aatcctgcatcttggcagaaggctttcaaatcagtaaactctccctaat---ccaatcataaggttctgg
                        Chimp  aatcctgcatcttggcagaaggctttcaaatcagtaaactctccctaat---ccaataataaggttccgg
                      Gorilla  aatcctgcatcttggcagaaggctttcaaatcagtaaactctccctaat---ccaatcataaggttctgg
                    Orangutan  aatcctgcatcttgggagaaggctttcaaatcagtaaactctccttaat---ccagtcataaggttctgg
                       Gibbon  aatcctgcatcttgggagagggccttcaaatcagtaaactctccctaat---ccaatcataaggttctgg
                       Rhesus  aatcctgcatcttgggagaaggctttcaaatcaataaactctccctaat---ccaatgataaggttctgg
          Crab-eating macaque  aatcctgcatcttgggagaaggctttcaaatcaataaactctccctaat---ccaatgataaggttctgg
                       Baboon  aatccagcatcttgggagaaggctttcaaatcaataaactctccctaat---ccaatgataaggttctgg
                 Green monkey  aatcctgcatcttgggagaaggctttcaaatcaataaactctccctaat---ctaatgataaggttctgg
             Brush-tailed rat  aatcttacgtttcggtactctgctt-----tcagtaagctctc--taattcaccagtaacaatg------
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
                        Shrew  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
                          Cow  ======================================================================
             Tibetan antelope  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
         David's myotis (bat)  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                          Dog  ======================================================================
                          Rat  ======================================================================
                 Prairie vole  ======================================================================
              Chinese hamster  ======================================================================
               Golden hamster  ======================================================================
                 Killer whale  ======================================================================
                      Ferret   ======================================================================
                     Squirrel  ======================================================================
                          Cat  ======================================================================
           Chinese tree shrew  ======================================================================
                         Pika  ======================================================================
               Pacific walrus  ======================================================================
               Naked mole-rat  ======================================================================
                       Rabbit  ======================================================================
                   Chinchilla  ======================================================================
                   Guinea pig  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
                    Armadillo  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                       Tenrec  ======================================================================
                     Bushbaby  ======================================================================
                        Horse  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Tetraodon  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
          Pundamilia nyererei  ======================================================================
        Burton's mouthbreeder  ======================================================================
     Chinese softshell turtle  ======================================================================
              Green seaturtle  ======================================================================
          Collared flycatcher  ======================================================================
           Southern platyfish  ======================================================================
                X. tropicalis  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                       Lizard  ======================================================================
                       Medaka  ======================================================================
                  Zebra finch  ======================================================================
              Squirrel monkey  ======================================================================
               Painted turtle  ======================================================================
           Tibetan ground jay  ======================================================================
              Tasmanian devil  ======================================================================
                      Wallaby  ======================================================================
                      Opossum  ======================================================================
                  Rock pigeon  ======================================================================
                      Lamprey  ======================================================================
                     Aardvark  ======================================================================
                 Mallard duck  ======================================================================
                 Weddell seal  ======================================================================
             Cape golden mole  ======================================================================
                      Dolphin  ======================================================================
                          Pig  ======================================================================
                      Megabat  ======================================================================
           American alligator  ======================================================================
                     Marmoset  ======================================================================

                        Human  ccaccttgatcaagctcccctctgaacctagt
                        Chimp  ccaccttgatcaagctcccctctgaacctagt
                      Gorilla  ccaccttgatcaagctcccctctgaacctagt
                    Orangutan  cccccttgatcaagctcccctctgaaccttgt
                       Gibbon  cccccttgatcaagctcccctctgaacctcgt
                       Rhesus  cctgcttgatcaagctcccctctgaacctcat
          Crab-eating macaque  cctgcttgatcaagctctcctctgaacctcat
                       Baboon  cctgcttgatcaggctcccctctgaacctcat
                 Green monkey  actgcttgatcaagctcccctctgaaccgtat
             Brush-tailed rat  ---gcttgatcaaggtcccctctggatctgat
          Cape elephant shrew  ================================
                     Hedgehog  ================================
                        Shrew  ================================
                Domestic goat  ================================
                        Sheep  ================================
                          Cow  ================================
             Tibetan antelope  ================================
                Big brown bat  ================================
                     Microbat  ================================
         David's myotis (bat)  ================================
               Bactrian camel  ================================
                       Alpaca  ================================
              Star-nosed mole  ================================
                        Mouse  ================================
                        Panda  ================================
                          Dog  ================================
                          Rat  ================================
                 Prairie vole  ================================
              Chinese hamster  ================================
               Golden hamster  ================================
                 Killer whale  ================================
                      Ferret   ================================
                     Squirrel  ================================
                          Cat  ================================
           Chinese tree shrew  ================================
                         Pika  ================================
               Pacific walrus  ================================
               Naked mole-rat  ================================
                       Rabbit  ================================
                   Chinchilla  ================================
                   Guinea pig  ================================
                      Manatee  ================================
                     Elephant  ================================
                    Armadillo  ================================
       Lesser Egyptian jerboa  ================================
                       Tenrec  ================================
                     Bushbaby  ================================
                        Horse  ================================
             Black flying-fox  ================================
             White rhinoceros  ================================
          Princess of Burundi  ================================
                 Nile tilapia  ================================
                         Fugu  ================================
       Yellowbelly pufferfish  ================================
                    Tetraodon  ================================
                  Zebra mbuna  ================================
                    Zebrafish  ================================
                   Coelacanth  ================================
                  Spotted gar  ================================
                  Stickleback  ================================
     Mexican tetra (cavefish)  --------------------------------
          Pundamilia nyererei  ================================
        Burton's mouthbreeder  ================================
     Chinese softshell turtle  ================================
              Green seaturtle  ================================
          Collared flycatcher  ================================
           Southern platyfish  ================================
                X. tropicalis  ================================
                   Budgerigar  ================================
                     Platypus  ================================
          Medium ground finch  ================================
       White-throated sparrow  ================================
             Peregrine falcon  ================================
                 Saker falcon  ================================
                       Turkey  ================================
                      Chicken  ================================
                       Lizard  ================================
                       Medaka  ================================
                  Zebra finch  ================================
              Squirrel monkey  ================================
               Painted turtle  ================================
           Tibetan ground jay  ================================
              Tasmanian devil  ================================
                      Wallaby  ================================
                      Opossum  ================================
                  Rock pigeon  ================================
                      Lamprey  ================================
                     Aardvark  ================================
                 Mallard duck  ================================
                 Weddell seal  ================================
             Cape golden mole  ================================
                      Dolphin  ================================
                          Pig  ================================
                      Megabat  ================================
           American alligator  ================================
                     Marmoset  ================================

Inserts between block 17 and 18 in window
            Brush-tailed rat 53bp

Alignment block 18 of 34 in window, 115251967 - 115252327, 361 bps 
B D                     Human  accacttgtactctcccacctcctgccaacatgtgctgtctagctgtctaggtttgtt--gttgtt----
B D                     Chimp  accacttgtactctcccacctcctgccaacatgtgctgtctagctgtctaggtttgtt--gttgtt----
B D                   Gorilla  accacttgtactctcccacctcctgccaacatgtgctgtctagctgtctaggtttgtt--gttgtt----
B D                 Orangutan  accacttatactctcccacctcctgccaacatgtgctgtctagctgtctaggtttgtt--tttgtttttg
B D                    Gibbon  accacttgtactctcccacctcctgccaacatgtgctgtctagctgtctagatttgt----ttgtttgtt
B D                    Rhesus  accacctgtactctcccacctccttccaacatgtactgtctatctgtctaggtttttttgtttgtttgtt
B D       Crab-eating macaque  accacctgtactctcccacctccttccaacatgtactgtctatctgtctaggtttttttgtttgtttgtt
B D                    Baboon  accacctgtactctcccacctccttccaacatgtactgtctatctgtctaggttttt---tttgtttgtt
B D              Green monkey  accacctgtactctcccatctccttccaacatgtactgtctagctgtctaggtttttt--tttgtttgtt
         Cape elephant shrew  ======================================================================
B D                  Hedgehog  ======================================================================
B D                     Shrew  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
B D                       Cow  ======================================================================
            Tibetan antelope  ======================================================================
               Big brown bat  ======================================================================
B D                  Microbat  ======================================================================
        David's myotis (bat)  ======================================================================
              Bactrian camel  ======================================================================
B D                    Alpaca  ======================================================================
             Star-nosed mole  ======================================================================
B D                     Mouse  ======================================================================
B D                     Panda  ======================================================================
B D                       Dog  ======================================================================
B D                       Rat  ======================================================================
                Prairie vole  ======================================================================
B D           Chinese hamster  ======================================================================
              Golden hamster  ======================================================================
                Killer whale  ======================================================================
B D                   Ferret   ======================================================================
B D                  Squirrel  ======================================================================
B D                       Cat  ======================================================================
          Chinese tree shrew  ======================================================================
B D                      Pika  ======================================================================
              Pacific walrus  ======================================================================
B D            Naked mole-rat  ======================================================================
B D                    Rabbit  ======================================================================
                  Chinchilla  ======================================================================
B D                Guinea pig  ======================================================================
B D                   Manatee  ======================================================================
B D                  Elephant  ======================================================================
B D                 Armadillo  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
            Brush-tailed rat  ======================================================================
B D                    Tenrec  ======================================================================
B D                  Bushbaby  ======================================================================
B D                     Horse  ======================================================================
            Black flying-fox  ======================================================================
B D          White rhinoceros  ======================================================================
         Princess of Burundi  ======================================================================
B D              Nile tilapia  ======================================================================
B D                      Fugu  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                 Tetraodon  ======================================================================
                 Zebra mbuna  ======================================================================
B D                 Zebrafish  ======================================================================
B D                Coelacanth  ======================================================================
                 Spotted gar  ======================================================================
B D               Stickleback  ======================================================================
    Mexican tetra (cavefish)  ----------------------------------------------------------------------
         Pundamilia nyererei  ======================================================================
       Burton's mouthbreeder  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D           Green seaturtle  ======================================================================
  D       Collared flycatcher  ======================================================================
          Southern platyfish  ======================================================================
B D             X. tropicalis  ======================================================================
B D                Budgerigar  ======================================================================
B D                  Platypus  ======================================================================
B D       Medium ground finch  ======================================================================
  D    White-throated sparrow  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
B D                    Lizard  ======================================================================
B D                    Medaka  ======================================================================
B D               Zebra finch  ======================================================================
B D           Squirrel monkey  ======================================================================
  D            Painted turtle  ======================================================================
          Tibetan ground jay  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                   Wallaby  ======================================================================
B D                   Opossum  ======================================================================
  D               Rock pigeon  ======================================================================
B D                   Lamprey  ======================================================================
                    Aardvark  ======================================================================
  D              Mallard duck  ======================================================================
                Weddell seal  ======================================================================
            Cape golden mole  ======================================================================
B D                   Dolphin  ======================================================================
B D                       Pig  ======================================================================
B D                   Megabat  ======================================================================
B D        American alligator  ======================================================================
B D                  Marmoset  ======================================================================

                        Human  -----------gttgttgttgtt---ttgagac-agagccttgctctgatgtccaggctggagtgcagtg
                        Chimp  -----------gttgttgttgttgttttgagac-agagccttgctctgatgtccaggctggagtgcagtg
                      Gorilla  --------gtggttgttgttgttgttttgagac-agagccttgctctgatgtccaggctggagtgcagtg
                    Orangutan  tt------gttgttgttgttgttgttttgagac-agagccttgctctgacatccaggctggactgcagtg
                       Gibbon  tg------ttttttgttgttgttgttttgagac-agagccttgctctgacgtccaggctggagtgcagtg
                       Rhesus  tg-tttgttttgtttt--gttttgttttgagacaagagtcttgttctgtcacccaggctggagtgcagtg
          Crab-eating macaque  tgttttgttttgtttt--gttttgttttgagacaagagtcttgttctgtcgcccaggctggagtgcagtg
                       Baboon  tgttttgttttgtttttgttttttttttgagacaagagtcttgctctgtcacccaggctggagtgcagta
                 Green monkey  tg-------------t--------ttttgagacaagagtcttgctctgttgcccaggctggagtacagtg
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
                        Shrew  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
                          Cow  ======================================================================
             Tibetan antelope  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
         David's myotis (bat)  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                          Dog  ======================================================================
                          Rat  ======================================================================
                 Prairie vole  ======================================================================
              Chinese hamster  ======================================================================
               Golden hamster  ======================================================================
                 Killer whale  ======================================================================
                      Ferret   ======================================================================
                     Squirrel  ======================================================================
                          Cat  ======================================================================
           Chinese tree shrew  ======================================================================
                         Pika  ======================================================================
               Pacific walrus  ======================================================================
               Naked mole-rat  ======================================================================
                       Rabbit  ======================================================================
                   Chinchilla  ======================================================================
                   Guinea pig  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
                    Armadillo  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
             Brush-tailed rat  ======================================================================
                       Tenrec  ======================================================================
                     Bushbaby  ======================================================================
                        Horse  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Tetraodon  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
          Pundamilia nyererei  ======================================================================
        Burton's mouthbreeder  ======================================================================
     Chinese softshell turtle  ======================================================================
              Green seaturtle  ======================================================================
          Collared flycatcher  ======================================================================
           Southern platyfish  ======================================================================
                X. tropicalis  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                       Lizard  ======================================================================
                       Medaka  ======================================================================
                  Zebra finch  ======================================================================
              Squirrel monkey  ======================================================================
               Painted turtle  ======================================================================
           Tibetan ground jay  ======================================================================
              Tasmanian devil  ======================================================================
                      Wallaby  ======================================================================
                      Opossum  ======================================================================
                  Rock pigeon  ======================================================================
                      Lamprey  ======================================================================
                     Aardvark  ======================================================================
                 Mallard duck  ======================================================================
                 Weddell seal  ======================================================================
             Cape golden mole  ======================================================================
                      Dolphin  ======================================================================
                          Pig  ======================================================================
                      Megabat  ======================================================================
           American alligator  ======================================================================
                     Marmoset  ======================================================================

                        Human  gttcgatcttggctcactgcaacctc----------------tgtctcccgggttcaagcaattctcctg
                        Chimp  gttcgatcttggctcactgcaacctc----------------tgtctcccgggttcaagcaattctcctg
                      Gorilla  gttcgatcttggctcactgcaacctctgtctcnnnnnnnnnntgtctcctgggttcaagcaattctcctg
                    Orangutan  gtgcgatcttggctcactgcaacctc----------------cgtctcccgggttcaaacaattctcctg
                       Gibbon  gtgcgatcttggctcactgcaacctc----------------cgtctcccgggttcaggcaattctcctg
                       Rhesus  gtgtgacctcggctcactgcaacctc----------------cgtctcctgggttcaagcaattctcctg
          Crab-eating macaque  gtgtgacctcggctcactgcaacctc----------------cgtctcctgggttcaagcaattctcctg
                       Baboon  gtgtgacctcagctcactgcaacctc----------------cgtctcctaggttcaagcaattctcctg
                 Green monkey  gcgtgacctcggctcactgcaacctc----------------cgtctcctgggttcaagcaatt---ctg
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
                        Shrew  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
                          Cow  ======================================================================
             Tibetan antelope  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
         David's myotis (bat)  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                          Dog  ======================================================================
                          Rat  ======================================================================
                 Prairie vole  ======================================================================
              Chinese hamster  ======================================================================
               Golden hamster  ======================================================================
                 Killer whale  ======================================================================
                      Ferret   ======================================================================
                     Squirrel  ======================================================================
                          Cat  ======================================================================
           Chinese tree shrew  ======================================================================
                         Pika  ======================================================================
               Pacific walrus  ======================================================================
               Naked mole-rat  ======================================================================
                       Rabbit  ======================================================================
                   Chinchilla  ======================================================================
                   Guinea pig  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
                    Armadillo  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
             Brush-tailed rat  ======================================================================
                       Tenrec  ======================================================================
                     Bushbaby  ======================================================================
                        Horse  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Tetraodon  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
          Pundamilia nyererei  ======================================================================
        Burton's mouthbreeder  ======================================================================
     Chinese softshell turtle  ======================================================================
              Green seaturtle  ======================================================================
          Collared flycatcher  ======================================================================
           Southern platyfish  ======================================================================
                X. tropicalis  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                       Lizard  ======================================================================
                       Medaka  ======================================================================
                  Zebra finch  ======================================================================
              Squirrel monkey  ======================================================================
               Painted turtle  ======================================================================
           Tibetan ground jay  ======================================================================
              Tasmanian devil  ======================================================================
                      Wallaby  ======================================================================
                      Opossum  ======================================================================
                  Rock pigeon  ======================================================================
                      Lamprey  ======================================================================
                     Aardvark  ======================================================================
                 Mallard duck  ======================================================================
                 Weddell seal  ======================================================================
             Cape golden mole  ======================================================================
                      Dolphin  ======================================================================
                          Pig  ======================================================================
                      Megabat  ======================================================================
           American alligator  ======================================================================
                     Marmoset  ======================================================================

                        Human  cctcagcctcctgagtagctgggactacaggcgcccgccaccacgcccggctaa-ttttttgtactttta
                        Chimp  cctcagcctcctgagtagctgggactacaggcgcccaccaccacacccggctaa-ttttttgtactttta
                      Gorilla  cctcagcttcctgagtagctgggactacaggcgcccgccaccacgcccggctaa-ttttttgtactttta
                    Orangutan  cctcagcctcctgagtagctgggactacaggtgcccaccaccacacccagctaatttttttgtactttta
                       Gibbon  cctcagcctcctgagtagctgggactacaggcgcctgccaccacacccggctaatttttttgtactttta
                       Rhesus  cctcagcctcctgagtagctgggactacaggcacctgccaccacacccggctaatttttttgtactttta
          Crab-eating macaque  cctcagcctcctgagtagctgggactacaggcacctgccaccacacccggctaatttttttgtactttta
                       Baboon  cctcagcctcctgagtagctgggattacaggcacctgccaccacacccggctaatttttttgtactttta
                 Green monkey  cctcagcctcctgagtagctgggactacaggcacctgccaccacacccggctaatttttttgtactttta
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
                        Shrew  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
                          Cow  ======================================================================
             Tibetan antelope  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
         David's myotis (bat)  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                          Dog  ======================================================================
                          Rat  ======================================================================
                 Prairie vole  ======================================================================
              Chinese hamster  ======================================================================
               Golden hamster  ======================================================================
                 Killer whale  ======================================================================
                      Ferret   ======================================================================
                     Squirrel  ======================================================================
                          Cat  ======================================================================
           Chinese tree shrew  ======================================================================
                         Pika  ======================================================================
               Pacific walrus  ======================================================================
               Naked mole-rat  ======================================================================
                       Rabbit  ======================================================================
                   Chinchilla  ======================================================================
                   Guinea pig  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
                    Armadillo  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
             Brush-tailed rat  ======================================================================
                       Tenrec  ======================================================================
                     Bushbaby  ======================================================================
                        Horse  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Tetraodon  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
          Pundamilia nyererei  ======================================================================
        Burton's mouthbreeder  ======================================================================
     Chinese softshell turtle  ======================================================================
              Green seaturtle  ======================================================================
          Collared flycatcher  ======================================================================
           Southern platyfish  ======================================================================
                X. tropicalis  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                       Lizard  ======================================================================
                       Medaka  ======================================================================
                  Zebra finch  ======================================================================
              Squirrel monkey  ======================================================================
               Painted turtle  ======================================================================
           Tibetan ground jay  ======================================================================
              Tasmanian devil  ======================================================================
                      Wallaby  ======================================================================
                      Opossum  ======================================================================
                  Rock pigeon  ======================================================================
                      Lamprey  ======================================================================
                     Aardvark  ======================================================================
                 Mallard duck  ======================================================================
                 Weddell seal  ======================================================================
             Cape golden mole  ======================================================================
                      Dolphin  ======================================================================
                          Pig  ======================================================================
                      Megabat  ======================================================================
           American alligator  ======================================================================
                     Marmoset  ======================================================================

                        Human  gtagagacgggggtttcactatgttggccaggctggtctcgaactcttgaccttgtgatctgcccgcctc
                        Chimp  gtagagacgggggtttcactatgttggccaggctggtctcgaactcttgaccttgtgatccgcccacctc
                      Gorilla  gtagagacgggggtttcactgtgttggccaggctggtctcgaactcttgaccttgtgatctgcctgcctc
                    Orangutan  gtagagacggggatttcactatgttggccaggctggtctcgaactcttgaccttgtgatccgcctgcctc
                       Gibbon  gtagagatgggggtttcactatattggccaggctggtctctaactcttgaccttgtgatcctcctgcctc
                       Rhesus  gtagagacgggggtttcactatgttggccaggctggtcttgaactcttgaccttgtgatccgcccacctc
          Crab-eating macaque  gtagagacgggggtttcactatgttggccaggctggtcttgaactcttgaccttgtgatccgcccacctc
                       Baboon  gtagagacaggggtttcactatgttggccaggctggtcttgaactcttgaccttgtgatccgcccacctc
                 Green monkey  gtagagacgggggtttcactatgttggccaggctggtcttgaactcttgaccttgtgatccacccacctc
          Cape elephant shrew  ======================================================================
                     Hedgehog  ======================================================================
                        Shrew  ======================================================================
                Domestic goat  ======================================================================
                        Sheep  ======================================================================
                          Cow  ======================================================================
             Tibetan antelope  ======================================================================
                Big brown bat  ======================================================================
                     Microbat  ======================================================================
         David's myotis (bat)  ======================================================================
               Bactrian camel  ======================================================================
                       Alpaca  ======================================================================
              Star-nosed mole  ======================================================================
                        Mouse  ======================================================================
                        Panda  ======================================================================
                          Dog  ======================================================================
                          Rat  ======================================================================
                 Prairie vole  ======================================================================
              Chinese hamster  ======================================================================
               Golden hamster  ======================================================================
                 Killer whale  ======================================================================
                      Ferret   ======================================================================
                     Squirrel  ======================================================================
                          Cat  ======================================================================
           Chinese tree shrew  ======================================================================
                         Pika  ======================================================================
               Pacific walrus  ======================================================================
               Naked mole-rat  ======================================================================
                       Rabbit  ======================================================================
                   Chinchilla  ======================================================================
                   Guinea pig  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
                    Armadillo  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
             Brush-tailed rat  ======================================================================
                       Tenrec  ======================================================================
                     Bushbaby  ======================================================================
                        Horse  ======================================================================
             Black flying-fox  ======================================================================
             White rhinoceros  ======================================================================
          Princess of Burundi  ======================================================================
                 Nile tilapia  ======================================================================
                         Fugu  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                    Tetraodon  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
                   Coelacanth  ======================================================================
                  Spotted gar  ======================================================================
                  Stickleback  ======================================================================
     Mexican tetra (cavefish)  ----------------------------------------------------------------------
          Pundamilia nyererei  ======================================================================
        Burton's mouthbreeder  ======================================================================
     Chinese softshell turtle  ======================================================================
              Green seaturtle  ======================================================================
          Collared flycatcher  ======================================================================
           Southern platyfish  ======================================================================
                X. tropicalis  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Medium ground finch  ======================================================================
       White-throated sparrow  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
                       Lizard  ======================================================================
                       Medaka  ======================================================================
                  Zebra finch  ======================================================================
              Squirrel monkey  ======================================================================
               Painted turtle  ======================================================================
           Tibetan ground jay  ======================================================================
              Tasmanian devil  ======================================================================
                      Wallaby  ======================================================================
                      Opossum  ======================================================================
                  Rock pigeon  ======================================================================
                      Lamprey  ======================================================================
                     Aardvark  ======================================================================
                 Mallard duck  ======================================================================
                 Weddell seal  ======================================================================
             Cape golden mole  ======================================================================
                      Dolphin  ======================================================================
                          Pig  ======================================================================
                      Megabat  ======================================================================
           American alligator  ======================================================================
                     Marmoset  ======================================================================

                        Human  gacctcccaaagtgctgggattacaggcgtgagccaccgtgaccagcga
                        Chimp  gacctcccaaagtgctgggattacaggcgtgagccaccgcgaccagcga
                      Gorilla  gacctcccaaagtgctgggattacaggcgtgagccaccgcgaccagcga
                    Orangutan  agcctcccaaagtgctgggattacaggcgtgagccactgccaccagcga
                       Gibbon  agcctcccaaagtgctgggattacaggtgtgggccactgcgaccggtga
                       Rhesus  tgcctcccaaagtggtgggattacaggcgtgagccactgcgaccggcga
          Crab-eating macaque  tgcctcccaaagtggtgggattacaggcgtgagccactgcgaccggcga
                       Baboon  tgcctcccaaagtgctgggattacaggcgtgagccactgcgaccggtga
                 Green monkey  ggcctcccaaagtgctgggattacaggcgtgagcgaccgcaaccggcga
          Cape elephant shrew  =================================================
                     Hedgehog  =================================================
                        Shrew  =================================================
                Domestic goat  =================================================
                        Sheep  =================================================
                          Cow  =================================================
             Tibetan antelope  =================================================
                Big brown bat  =================================================
                     Microbat  =================================================
         David's myotis (bat)  =================================================
               Bactrian camel  =================================================
                       Alpaca  =================================================
              Star-nosed mole  =================================================
                        Mouse  =================================================
                        Panda  =================================================
                          Dog  =================================================
                          Rat  =================================================
                 Prairie vole  =================================================
              Chinese hamster  =================================================
               Golden hamster  =================================================
                 Killer whale  =================================================
                      Ferret   =================================================
                     Squirrel  =================================================
                          Cat  =================================================
           Chinese tree shrew  =================================================
                         Pika  =================================================
               Pacific walrus  =================================================
               Naked mole-rat  =================================================
                       Rabbit  =================================================
                   Chinchilla  =================================================
                   Guinea pig  =================================================
                      Manatee  =================================================
                     Elephant  =================================================
                    Armadillo  =================================================
       Lesser Egyptian jerboa  =================================================
             Brush-tailed rat  =================================================
                       Tenrec  =================================================
                     Bushbaby  =================================================
                        Horse  =================================================
             Black flying-fox  =================================================
             White rhinoceros  =================================================
          Princess of Burundi  =================================================
                 Nile tilapia  =================================================
                         Fugu  =================================================
       Yellowbelly pufferfish  =================================================
                    Tetraodon  =================================================
                  Zebra mbuna  =================================================
                    Zebrafish  =================================================
                   Coelacanth  =================================================
                  Spotted gar  =================================================
                  Stickleback  =================================================
     Mexican tetra (cavefish)  -------------------------------------------------
          Pundamilia nyererei  =================================================
        Burton's mouthbreeder  =================================================
     Chinese softshell turtle  =================================================
              Green seaturtle  =================================================
          Collared flycatcher  =================================================
           Southern platyfish  =================================================
                X. tropicalis  =================================================
                   Budgerigar  =================================================
                     Platypus  =================================================
          Medium ground finch  =================================================
       White-throated sparrow  =================================================
             Peregrine falcon  =================================================
                 Saker falcon  =================================================
                       Turkey  =================================================
                      Chicken  =================================================
                       Lizard  =================================================
                       Medaka  =================================================
                  Zebra finch  =================================================
              Squirrel monkey  =================================================
               Painted turtle  =================================================
           Tibetan ground jay  =================================================
              Tasmanian devil  =================================================
                      Wallaby  =================================================
                      Opossum  =================================================
                  Rock pigeon  =================================================
                      Lamprey  =================================================
                     Aardvark  =================================================
                 Mallard duck  =================================================
                 Weddell seal  =================================================
             Cape golden mole  =================================================
                      Dolphin  =================================================
                          Pig  =================================================
                      Megabat  =================================================
           American alligator  =================================================
                     Marmoset  =================================================

Alignment block 19 of 34 in window, 115252328 - 115252328, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
             Brush-tailed rat  a
B D                    Alpaca  a
B D                       Cat  a
B D                   Ferret   a
         Cape elephant shrew  =
B D                  Hedgehog  =
B D                     Shrew  =
               Domestic goat  =
B D                     Sheep  =
B D                       Cow  =
            Tibetan antelope  =
               Big brown bat  =
B D                  Microbat  =
        David's myotis (bat)  =
              Bactrian camel  =
             Star-nosed mole  =
B D                     Mouse  =
B D                     Panda  =
B D                       Dog  =
B D                       Rat  =
                Prairie vole  =
B D           Chinese hamster  =
              Golden hamster  =
                Killer whale  =
B D                  Squirrel  =
          Chinese tree shrew  =
B D                      Pika  =
              Pacific walrus  =
B D            Naked mole-rat  =
B D                    Rabbit  =
                  Chinchilla  =
B D                Guinea pig  =
B D                   Manatee  =
B D                  Elephant  =
B D                 Armadillo  =
      Lesser Egyptian jerboa  =
B D                    Tenrec  =
B D                  Bushbaby  =
B D                     Horse  =
            Black flying-fox  =
B D          White rhinoceros  =
         Princess of Burundi  =
B D              Nile tilapia  =
B D                      Fugu  =
      Yellowbelly pufferfish  =
B D                 Tetraodon  =
                 Zebra mbuna  =
B D                 Zebrafish  =
B D                Coelacanth  =
                 Spotted gar  =
B D               Stickleback  =
    Mexican tetra (cavefish)  -
         Pundamilia nyererei  =
       Burton's mouthbreeder  =
  D  Chinese softshell turtle  =
  D           Green seaturtle  =
  D       Collared flycatcher  =
          Southern platyfish  =
B D             X. tropicalis  =
B D                Budgerigar  =
B D                  Platypus  =
B D       Medium ground finch  =
  D    White-throated sparrow  =
  D          Peregrine falcon  =
  D              Saker falcon  =
B D                    Turkey  =
B D                   Chicken  =
B D                    Lizard  =
B D                    Medaka  =
B D               Zebra finch  =
B D           Squirrel monkey  =
  D            Painted turtle  =
          Tibetan ground jay  =
B D           Tasmanian devil  =
B D                   Wallaby  =
B D                   Opossum  =
  D               Rock pigeon  =
B D                   Lamprey  =
                    Aardvark  =
  D              Mallard duck  =
                Weddell seal  =
            Cape golden mole  =
B D                   Dolphin  =
B D                       Pig  =
B D                   Megabat  =
B D        American alligator  =
B D                  Marmoset  =

Alignment block 20 of 34 in window, 115252329 - 115252330, 2 bps 
B D                     Human  gg
B D                     Chimp  gg
B D                   Gorilla  ga
B D                 Orangutan  gt
B D                    Gibbon  gg
B D                    Rhesus  gg
B D       Crab-eating macaque  gg
B D                    Baboon  gg
B D              Green monkey  gg
B D                  Squirrel  gg
             Brush-tailed rat  gg
B D                    Alpaca  gg
B D                       Cat  gg
B D                   Ferret   gg
         Cape elephant shrew  ==
B D                  Hedgehog  ==
B D                     Shrew  ==
               Domestic goat  ==
B D                     Sheep  ==
B D                       Cow  ==
            Tibetan antelope  ==
               Big brown bat  ==
B D                  Microbat  ==
        David's myotis (bat)  ==
              Bactrian camel  ==
             Star-nosed mole  ==
B D                     Mouse  ==
B D                     Panda  ==
B D                       Dog  ==
B D                       Rat  ==
                Prairie vole  ==
B D           Chinese hamster  ==
              Golden hamster  ==
                Killer whale  ==
          Chinese tree shrew  ==
B D                      Pika  ==
              Pacific walrus  ==
B D            Naked mole-rat  ==
B D                    Rabbit  ==
                  Chinchilla  ==
B D                Guinea pig  ==
B D                   Manatee  ==
B D                  Elephant  ==
B D                 Armadillo  ==
      Lesser Egyptian jerboa  ==
B D                    Tenrec  ==
B D                  Bushbaby  ==
B D                     Horse  ==
            Black flying-fox  ==
B D          White rhinoceros  ==
         Princess of Burundi  ==
B D              Nile tilapia  ==
B D                      Fugu  ==
      Yellowbelly pufferfish  ==
B D                 Tetraodon  ==
                 Zebra mbuna  ==
B D                 Zebrafish  ==
B D                Coelacanth  ==
                 Spotted gar  ==
B D               Stickleback  ==
    Mexican tetra (cavefish)  --
         Pundamilia nyererei  ==
       Burton's mouthbreeder  ==
  D  Chinese softshell turtle  ==
  D           Green seaturtle  ==
  D       Collared flycatcher  ==
          Southern platyfish  ==
B D             X. tropicalis  ==
B D                Budgerigar  ==
B D                  Platypus  ==
B D       Medium ground finch  ==
  D    White-throated sparrow  ==
  D          Peregrine falcon  ==
  D              Saker falcon  ==
B D                    Turkey  ==
B D                   Chicken  ==
B D                    Lizard  ==
B D                    Medaka  ==
B D               Zebra finch  ==
B D           Squirrel monkey  ==
  D            Painted turtle  ==
          Tibetan ground jay  ==
B D           Tasmanian devil  ==
B D                   Wallaby  ==
B D                   Opossum  ==
  D               Rock pigeon  ==
B D                   Lamprey  ==
                    Aardvark  ==
  D              Mallard duck  ==
                Weddell seal  ==
            Cape golden mole  ==
B D                   Dolphin  ==
B D                       Pig  ==
B D                   Megabat  ==
B D        American alligator  ==
B D                  Marmoset  ==

Alignment block 21 of 34 in window, 115252331 - 115252358, 28 bps 
B D                     Human  tcttatagattctttggtcgtatactct
B D                     Chimp  tcttatagattctttggtcgtatactct
B D                   Gorilla  tcttatagattgtttggtggtatactct
B D                 Orangutan  tcttatagattctttggtggcatactct
B D                    Gibbon  tcttacagattctttggtggtatactct
B D                    Rhesus  tcttacagattctttggtggtatattct
B D       Crab-eating macaque  tcttacagattctttggtggtatattct
B D                    Baboon  tcttacagattctttggtggtatattct
B D              Green monkey  tcttacagattctttggtggtatactct
B D                  Squirrel  tcttatagctcctttga-ggttta----
             Brush-tailed rat  tcttatagctccttcaa-gatgtaattt
B D                    Alpaca  tcttgcagatcctttgg-ggtgtagcct
B D                     Horse  tcttatagattctttgg-gatatagttt
B D                       Cat  tcttacagatactttgg-ggcatagtcc
B D                   Ferret   tcttccagatac-ttgg-ggcatcatcc
         Cape elephant shrew  ============================
B D                  Hedgehog  ============================
B D                     Shrew  ============================
               Domestic goat  ============================
B D                     Sheep  ============================
B D                       Cow  ============================
            Tibetan antelope  ============================
               Big brown bat  ============================
B D                  Microbat  ============================
        David's myotis (bat)  ============================
              Bactrian camel  ============================
             Star-nosed mole  ============================
B D                     Mouse  ============================
B D                     Panda  ============================
B D                       Dog  ============================
B D                       Rat  ============================
                Prairie vole  ============================
B D           Chinese hamster  ============================
              Golden hamster  ============================
                Killer whale  ============================
          Chinese tree shrew  ============================
B D                      Pika  ============================
              Pacific walrus  ============================
B D            Naked mole-rat  ============================
B D                    Rabbit  ============================
                  Chinchilla  ============================
B D                Guinea pig  ============================
B D                   Manatee  ============================
B D                  Elephant  ============================
B D                 Armadillo  ============================
      Lesser Egyptian jerboa  ============================
B D                    Tenrec  ============================
B D                  Bushbaby  ============================
            Black flying-fox  ============================
B D          White rhinoceros  ============================
         Princess of Burundi  ============================
B D              Nile tilapia  ============================
B D                      Fugu  ============================
      Yellowbelly pufferfish  ============================
B D                 Tetraodon  ============================
                 Zebra mbuna  ============================
B D                 Zebrafish  ============================
B D                Coelacanth  ============================
                 Spotted gar  ============================
B D               Stickleback  ============================
    Mexican tetra (cavefish)  ----------------------------
         Pundamilia nyererei  ============================
       Burton's mouthbreeder  ============================
  D  Chinese softshell turtle  ============================
  D           Green seaturtle  ============================
  D       Collared flycatcher  ============================
          Southern platyfish  ============================
B D             X. tropicalis  ============================
B D                Budgerigar  ============================
B D                  Platypus  ============================
B D       Medium ground finch  ============================
  D    White-throated sparrow  ============================
  D          Peregrine falcon  ============================
  D              Saker falcon  ============================
B D                    Turkey  ============================
B D                   Chicken  ============================
B D                    Lizard  ============================
B D                    Medaka  ============================
B D               Zebra finch  ============================
B D           Squirrel monkey  ============================
  D            Painted turtle  ============================
          Tibetan ground jay  ============================
B D           Tasmanian devil  ============================
B D                   Wallaby  ============================
B D                   Opossum  ============================
  D               Rock pigeon  ============================
B D                   Lamprey  ============================
                    Aardvark  ============================
  D              Mallard duck  ============================
                Weddell seal  ============================
            Cape golden mole  ============================
B D                   Dolphin  ============================
B D                       Pig  ============================
B D                   Megabat  ============================
B D        American alligator  ============================
B D                  Marmoset  ============================

Alignment block 22 of 34 in window, 115252359 - 115252685, 327 bps 
B D                     Human  ctttctttccttagcagtcccagcatgtacctagatgagttatgttgatacccaacccaa-gttataggc
B D                     Chimp  ctttctttccttagcagtcccagcatgtacctagatgagttatgttgatacccaacccca-gttataggc
B D                   Gorilla  ctttctttccttagcagtcccagcatgtacctagatgagttatgttgatacccaacccaa-gttataggc
B D                 Orangutan  ctttctttccttagcagtcccagcatgtacctagatgagttatgttgatacccaacccaa-gttataggc
B D                    Gibbon  ctttctttccttagcagtcccagcatgtacctagatgagttatgttgatacccaccccaa-gttataggc
B D                    Rhesus  ctttctttccttagcagtcccaacatgtacctggatgagttatgttgatacccaacccaa-gttataggc
B D       Crab-eating macaque  ctttctttccttagcagtcccaacatgtacctggatgagttatgttgatacccaacccaa-gttataggc
B D                    Baboon  ctttctttccttagcagtcccaacatgtacctggatgagttatgttgatacccaacccaa-gttataggc
B D              Green monkey  ctttctttccttagcagtcccagcatgtacctggatgagttatgttgatacccaacccaa-gttataggc
B D                  Squirrel  gtatctttccataactgtcctaac-----tctggatgagttaggctgatacctcatacaa-g--ctagac
B D            Naked mole-rat  ctttcttttcttagcagtcttaacatgtacctggtaaactcatgctgatacttaacccaa-gctctaggg
             Brush-tailed rat  ctttcttttcttagcagtcttaacatgtatgtggtggactcatgctaatgcctaacccaa-gctctagga
B D                    Alpaca  cttt-tttccttagcaatcccagtgtataataggcttagttatgctgag-------ccaa-cttacaggc
B D                     Horse  ctttctttccataacagtccaggcatgtacctggctgagttatgctgag-------ccaa-attataagc
B D                       Cat  ctttctttccatagcagttgcagcatgtacttggctgaattatgctaag-------ccaatattattggc
B D                   Ferret   ctttccttccttagcggtcacagcatgtccctggctgaattatgctgag-------ccaagattattgac
         Cape elephant shrew  ======================================================================
B D                  Hedgehog  ======================================================================
B D                     Shrew  ======================================================================
               Domestic goat  ======================================================================
B D                     Sheep  ======================================================================
B D                       Cow  ======================================================================
            Tibetan antelope  ======================================================================
               Big brown bat  ======================================================================
B D                  Microbat  ======================================================================
        David's myotis (bat)  ======================================================================
              Bactrian camel  ======================================================================
             Star-nosed mole  ======================================================================
B D                     Mouse  ======================================================================
B D                     Panda  ======================================================================
B D                       Dog  ======================================================================
B D                       Rat  ======================================================================
                Prairie vole  ======================================================================
B D           Chinese hamster  ======================================================================
              Golden hamster  ======================================================================
                Killer whale  ======================================================================
          Chinese tree shrew  ======================================================================
B D                      Pika  ======================================================================
              Pacific walrus  ======================================================================
B D                    Rabbit  ======================================================================
                  Chinchilla  ======================================================================
B D                Guinea pig  ======================================================================
B D                   Manatee  ======================================================================
B D                  Elephant  ======================================================================
B D                 Armadillo  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
B D                    Tenrec  ======================================================================
B