Multiz Alignments of 100 Vertebrates
 

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Alignment block 1 of 784 in window, 117424481 - 117424536, 56 bps 
B D                     Human  ctatatctctattactg--ccttt-taaaaa-tgaac----ttta-a--aaatttttgt--aactaaaa
B D                     Chimp  ctatatctctattactg--ccttt-taaaaa-tgaac----ttta-a--aaatttttgt--aactaaaa
B D                   Gorilla  ctatatctctattactg--ccttt-taaaaa-tgaac----ttta-a--aaatttttgt--aactgaaa
B D                 Orangutan  ctatatctctattactg--ccttt-taaaaa-tgaac----ttta-a--aaa-ttttgt--aactaaaa
B D                    Gibbon  ctatatctctattactg--ccttt-taaaaa-tgaac----ttta-a--aaatttttgt--aactaaaa
B D                    Rhesus  ctacatttctattactg--gcttt-taaaaa-tgaac----ttta-a--aaattgttgt--aattaaaa
B D       Crab-eating macaque  ctacatttctattactg--gcttt-taaaaa-tgaac----ttta-a--aaattgttgt--aattaaaa
B D                    Baboon  ctacatttctattactg--gcttt-taaata-tgaac----ttta-a--aaatttttgt--aattaaaa
B D              Green monkey  ctacatttctattactg--gcttt-taaaaa-tgaac----ttta-a--aaatttttgt--aattaaaa
B D                  Marmoset  ctatatctttattactg--gct-------------ac----ttta-a--aaatttttgt--aatcagaa
B D           Squirrel monkey  ctatatctttattactg--gct-------------ac----ttta-a--aaatttttgt--aattaaaa
B D                  Bushbaby  ctatacctatattgttg--gcttt-ttaaga-cgatc----ttat-a--aaatttttgt--aattaaaa
           Chinese tree shrew  ctatgtt--gactattg--acctt-ttaaaa-ggagt----tttt-a--atttttttac--aatcaaaa
B D                  Squirrel  ccatatatttattattg--gtttt-ttaaa----tgt----tttc-a--gt--tttaat--aattaaaa
                 Prairie vole  -tatacatttattattg--gcttt-ttaaaa-tgagt----ttta-a--atggttttgt--aattaaag
B D           Chinese hamster  ctatacatctatcactg--ga-tt-ttaaaa-cgagt----ttta-a--attgttttgt--aattaaag
               Golden hamster  ctatacacttatcattg--gcttt-ttaaaa-taagt----ttta-a--attattttgt--aattacag
B D                     Mouse  ctacacagttatttttgttttttt-ttaaga-tgagt----ttta-a--aatgtattgt--aattaaag
B D                       Rat  ctatacatttacagttg--gcttt-ttaaaa-tgagt----ttta-a--aatgtattat--aattaaag
B D                    Rabbit  ccatgtatttatta-----tattt-acaaaa-taact----ttta-a--at--ttctat--aattaaaa
B D                       Pig  c----tatttaatattg--tattt-ttaaaa-tgaac----tt--------ttttttgt--aattaaag
B D                    Alpaca  ctatttatttgttactg--gcttt-taaaaa-cgaca----ttaa-a--cattttttgt--acttaaaa
               Bactrian camel  ctatttatttgttactg--gcttt-taaaaa-cgacc----ttaa-a--cattttttgt--acttaaaa
B D                   Dolphin  c----tatttgttattg--ttttt-ttaaaa-ggaag----ttaa-a--atttttttgt--aattaaag
                 Killer whale  c----tatttgttattg--ttttt-ttaaaa-ggaag----ttaa-a--atttttttgt--aattaaag
             Tibetan antelope  c----tgtttgttattg--gtttt-ttagaa-ggaac----ttaa-a--a-ttttttgt--aattaaag
B D                       Cow  c----tatttgttattg--gtttg-ttagaa-ggaac----ttaa-a--a-ttttttgt--aattaaag
B D                     Sheep  c----tgtttgttattg--gtttt-ttagaa-ggaac----ttaa-a--a-ttttttgt--aattaaag
                Domestic goat  c----tgtttgttattg--gtttt-ttagaa-ggaac----ttaa-a--a-ttttttgt--aattaaag
B D          White rhinoceros  ctatagctttgttactg--gcttt-ta--------------tttt-a--aaatttccat--aattaaac
B D                       Cat  ctaca----tgttactg--gcttt-tgaaaa-ataat----cttc-a--aaattttttt--aattaaaa
B D                       Dog  ctatatatttattagtg--gcttt-tgaaaa-ttaa------ttt-a--aaaaatttgt--aattaaaa
B D                   Ferret   ctatatatttattattg--gcctt-tgaaaa-tgaat----tttt-a--aaatgtttgt--aattaaaa
B D                     Panda  ctatatatttattattg--gtttt-cgaaaa-ttaat----tttt-t--gaatgtttgt--aattaaaa
               Pacific walrus  ctatatatttattattg--gcttc-tgaaaa-ttaat----tttt-a--aaatgtttgt--aattaaaa
                 Weddell seal  ctatatatttattattg--gcttc-tgaaaa-ttaat----tttt-a--aaatgtttgt--aattaaaa
             Black flying-fox  ctatatatttattagt----cttt-tttaaa-tgaac----tttt-a--aaatttttgt--aattaaa-
B D                   Megabat  ctatatatttattagt----cttt-tttaaa-tgaac----tttt-a--aaatttttgt--aattaaa-
                Big brown bat  ttatata-ttattattt--gctgt-tttaaa-caaac----ttta-a--aattttctgt--aattaaa-
B D                  Microbat  ctatata-ttattaatt--gctgt-tttaaa-ttaac----ttta-a--agttttctgt--aattaaa-
B D                     Shrew  -----tattatttatta--gactt-ctgaa---gaac----ttaa-cagtttttttttt--aattaaaa
              Star-nosed mole  -------------------------------------------------attttttaat--aattaaaa
B D                  Elephant  ctatacactta-aagtg--gctt--ttaaaagtgagccactttta-a--tttttttttc--cattaaaa
          Cape elephant shrew  ctatctatttattagtg--gctttcttaaaag-------------------------------ttatga
B D                   Manatee  ctataaactta-tagtg--gcttt-ttaaaagtgacctacttttata--aatttttttt--aattacaa
             Cape golden mole  ccatatactta-tcagt--gcctt-ttaaaagtgagc----tttaaa--aatgggtttt--agttaaaa
B D                    Tenrec  ccat---tttt-taatg--gtttc-ttaaaagtgagt----tctaag--att---ttttaaaattacaa
                     Aardvark  ccataaatttattagtg--tcctt-ttaaaagtgagc----ttta------ttttatttgaaattaaaa
B D                 Armadillo  ctacatat----tattg--acttt-ttaaaa-tgagc----ttttaa--aaaattttgt--aattagaa
B D                      Pika  =====================================================================
B D                  Hedgehog  =====================================================================
      Lesser Egyptian jerboa  =====================================================================
        David's myotis (bat)  =====================================================================
B D                    Lizard  =====================================================================
      Yellowbelly pufferfish  =====================================================================
B D                      Fugu  =====================================================================
B D                     Horse  =====================================================================
          Tibetan ground jay  =====================================================================
B D               Zebra finch  =====================================================================
  D    White-throated sparrow  =====================================================================
B D       Medium ground finch  =====================================================================
B D        American alligator  =====================================================================
B D                    Turkey  =====================================================================
B D                   Chicken  =====================================================================
  D          Peregrine falcon  =====================================================================
  D              Saker falcon  =====================================================================
  D               Rock pigeon  =====================================================================
B D                Budgerigar  =====================================================================
B D                  Platypus  =====================================================================
  D       Collared flycatcher  =====================================================================
  D  Chinese softshell turtle  =====================================================================
  D            Painted turtle  =====================================================================
B D                   Opossum  =====================================================================
B D           Tasmanian devil  =====================================================================
B D                Coelacanth  =====================================================================
  D           Green seaturtle  =====================================================================
            Brush-tailed rat  =====================================================================
                  Chinchilla  =====================================================================
B D             X. tropicalis  =====================================================================
B D                Guinea pig  =====================================================================
B D            Naked mole-rat  ---------------------------------------------------------------------

Inserts between block 1 and 2 in window
B D                    Shrew 474bp

Alignment block 2 of 784 in window, 117424537 - 117424554, 18 bps 
B D                     Human  ac--aaatttcaaat-------------------------------------------------------
B D                     Chimp  ac--aaatttcaaat-------------------------------------------------------
B D                   Gorilla  ac--aaatttcaaat-------------------------------------------------------
B D                 Orangutan  ac--aaatttcaaat-------------------------------------------------------
B D                    Gibbon  ac--aaatttcaaat-------------------------------------------------------
B D                    Rhesus  ac--aaatttcaaat-------------------------------------------------------
B D       Crab-eating macaque  ac--aaatttcaaat-------------------------------------------------------
B D                    Baboon  ac--aaatttcaaat-------------------------------------------------------
B D              Green monkey  ac--aaatttcaaat-------------------------------------------------------
B D                  Marmoset  ac--aaatttcaaac-------------------------------------------------------
B D           Squirrel monkey  ac--aaatttcaaac-------------------------------------------------------
B D                  Bushbaby  ac---aatttcaaat-------------------------------------------------------
           Chinese tree shrew  ac--aaatttcaagt-------------------------------------------------------
B D                  Squirrel  cc--aaatttcaaat-------------------------------------------------------
                 Prairie vole  aa--aaatttcaaat-------------------------------------------------------
B D           Chinese hamster  aa--aattttcaaat-------------------------------------------------------
               Golden hamster  aa--aattttcaaat-------------------------------------------------------
B D                     Mouse  ac--aaatttcaaat-------------------------------------------------------
B D                       Rat  ----aaatttcaaat-------------------------------------------------------
B D                    Rabbit  ac--aagtttcaa---------------------------------------------------------
B D                       Pig  ac--taattttaaaa-------------------------------------------------------
B D                    Alpaca  --------tttgaaa-------------------------------------------------------
               Bactrian camel  --------ttttaaa-------------------------------------------------------
B D                   Dolphin  ac--aaattttaaaa-------------------------------------------------------
                 Killer whale  ac--aaattttaaaa-------------------------------------------------------
             Tibetan antelope  ac--aaattttaaaa-------------------------------------------------------
B D                       Cow  ac--aaattttagaa-------------------------------------------------------
B D                     Sheep  ac--aaattttaaaa-------------------------------------------------------
                Domestic goat  ac--aaattttaaaa-------------------------------------------------------
B D          White rhinoceros  ----aaattttaagg-------------------------------------------------------
B D                       Cat  ac--aaaattaaaaaaaaaatttaatgtttatttttgagagagacagagcatggattggggaggggcaaa
B D                       Dog  a---aaatctttaaa-------------------------------------------------------
B D                   Ferret   ----catttttaaag-------------------------------------------------------
B D                     Panda  aca-aaattttaaaa-------------------------------------------------------
               Pacific walrus  ac--aaattttaaaa-------------------------------------------------------
                 Weddell seal  ac--aaattttaaaa-------------------------------------------------------
             Black flying-fox  ----caattttaaaa-------------------------------------------------------
B D                   Megabat  ----caattttaaaa-------------------------------------------------------
                Big brown bat  ----cgattttaaaa-------------------------------------------------------
B D                  Microbat  ----caattttataa-------------------------------------------------------
              Star-nosed mole  --ccaaattataaaa-------------------------------------------------------
B D                  Elephant  ac--aaattttaaaa-------------------------------------------------------
          Cape elephant shrew  ac--aaatattgaaa-------------------------------------------------------
B D                   Manatee  ac--aaattttaaaa-------------------------------------------------------
             Cape golden mole  ac--aagttttaaaa-------------------------------------------------------
B D                    Tenrec  at--gaaatttaaaa-------------------------------------------------------
                     Aardvark  ac--aaatatcaaaa-------------------------------------------------------
B D                 Armadillo  ac--aaatttttaaa-------------------------------------------------------
B D                     Shrew  ======================================================================
B D                      Pika  ======================================================================
B D                  Hedgehog  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
        David's myotis (bat)  ======================================================================
B D                    Lizard  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                     Horse  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
  D    White-throated sparrow  ======================================================================
B D       Medium ground finch  ======================================================================
B D        American alligator  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D                Budgerigar  ======================================================================
B D                  Platypus  ======================================================================
  D       Collared flycatcher  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                Coelacanth  ======================================================================
  D           Green seaturtle  ======================================================================
            Brush-tailed rat  ======================================================================
                  Chinchilla  ======================================================================
B D             X. tropicalis  ======================================================================
B D                Guinea pig  ======================================================================
B D            Naked mole-rat  ----------------------------------------------------------------------

                        Human  ------------ggttg
                        Chimp  ------------ggttg
                      Gorilla  ------------ggttg
                    Orangutan  ------------ggttg
                       Gibbon  ------------ggttg
                       Rhesus  ------------ggttg
          Crab-eating macaque  ------------ggttg
                       Baboon  ------------ggttg
                 Green monkey  ------------ggttg
                     Marmoset  ------------cgttg
              Squirrel monkey  ----------gaaattg
                     Bushbaby  ------------ggttg
           Chinese tree shrew  ------------ggttg
                     Squirrel  ------------gattg
                 Prairie vole  ------------ggcta
              Chinese hamster  ------------gacta
               Golden hamster  ------------gacta
                        Mouse  ------------ggctg
                          Rat  ------------ggctg
                       Rabbit  ----------------t
                          Pig  ------------ggttg
                       Alpaca  ------------gattg
               Bactrian camel  ------------gattg
                      Dolphin  ------------ggctg
                 Killer whale  ------------ggctg
             Tibetan antelope  ------------ggttg
                          Cow  ------------ggttg
                        Sheep  ------------ggttg
                Domestic goat  ------------ggttg
             White rhinoceros  -------ggcta-----
                          Cat  gagagga----------
                          Dog  -----------------
                      Ferret   -----------------
                        Panda  -----------------
               Pacific walrus  -----------------
                 Weddell seal  -----------------
             Black flying-fox  ------------ggttg
                      Megabat  ------------ggttg
                Big brown bat  ------------cgttt
                     Microbat  ------------ggttc
              Star-nosed mole  -----------aaactg
                     Elephant  ------------ggttg
          Cape elephant shrew  ------------ggttg
                      Manatee  ------------ggttg
             Cape golden mole  ------------ggttg
                       Tenrec  ------------agctg
                     Aardvark  -------------gttg
                    Armadillo  ------------aattg
                        Shrew  =================
                         Pika  =================
                     Hedgehog  =================
       Lesser Egyptian jerboa  =================
         David's myotis (bat)  =================
                       Lizard  =================
       Yellowbelly pufferfish  =================
                         Fugu  =================
                        Horse  =================
           Tibetan ground jay  =================
                  Zebra finch  =================
       White-throated sparrow  =================
          Medium ground finch  =================
           American alligator  =================
                       Turkey  =================
                      Chicken  =================
             Peregrine falcon  =================
                 Saker falcon  =================
                  Rock pigeon  =================
                   Budgerigar  =================
                     Platypus  =================
          Collared flycatcher  =================
     Chinese softshell turtle  =================
               Painted turtle  =================
                      Opossum  =================
              Tasmanian devil  =================
                   Coelacanth  =================
              Green seaturtle  =================
             Brush-tailed rat  =================
                   Chinchilla  =================
                X. tropicalis  =================
                   Guinea pig  =================
               Naked mole-rat  -----------------

Inserts between block 2 and 3 in window
B D                      Pig 3bp
B D                   Alpaca 3bp
              Bactrian camel 3bp
B D                  Dolphin 3bp
                Killer whale 3bp
            Tibetan antelope 3bp
B D                      Cow 3bp
B D                    Sheep 3bp
               Domestic goat 3bp
B D         White rhinoceros 289bp
B D                      Cat 115bp
B D                      Dog 5bp
B D                  Ferret  5bp
B D                    Panda 5bp
              Pacific walrus 5bp
                Weddell seal 5bp
            Black flying-fox 1bp
B D                  Megabat 1bp
               Big brown bat 1bp
B D                 Microbat 1bp

Alignment block 3 of 784 in window, 117424555 - 117424559, 5 bps 
B D                     Human  act----aa
B D                     Chimp  act----aa
B D                   Gorilla  act----aa
B D                 Orangutan  act----aa
B D                    Gibbon  act----aa
B D                    Rhesus  act----aa
B D       Crab-eating macaque  act----aa
B D                    Baboon  act----aa
B D              Green monkey  act----aa
B D                  Marmoset  act----aa
B D           Squirrel monkey  act----aa
B D                  Bushbaby  act----aa
           Chinese tree shrew  act----aa
B D                  Squirrel  act----aa
                 Prairie vole  accaaatac
B D           Chinese hamster  accaaacag
               Golden hamster  gccaaacat
B D                     Mouse  agc----ac
B D                       Rat  acc----ac
B D                    Rabbit  act----aa
B D                       Pig  -------ga
B D                    Alpaca  -------aa
               Bactrian camel  -------aa
B D                   Dolphin  -------aa
                 Killer whale  -------aa
             Tibetan antelope  -------aa
B D                       Cow  -------ca
B D                     Sheep  -------aa
                Domestic goat  -------aa
B D                       Cat  act----ga
B D                       Dog  act----aa
B D                   Ferret   act----aa
B D                     Panda  act----aa
               Pacific walrus  act----aa
                 Weddell seal  act----aa
             Black flying-fox  -ct----aa
B D                   Megabat  -ct----aa
                Big brown bat  -ct----aa
B D                  Microbat  -ct----aa
              Star-nosed mole  act----aa
B D                  Elephant  act----aa
          Cape elephant shrew  act----at
B D                   Manatee  acc----ta
             Cape golden mole  gct----aa
B D                    Tenrec  tct----at
                     Aardvark  act----aa
B D                 Armadillo  aca----aa
B D                     Shrew  =========
B D                      Pika  =========
B D                  Hedgehog  =========
B D          White rhinoceros  =========
      Lesser Egyptian jerboa  =========
        David's myotis (bat)  =========
B D                    Lizard  =========
      Yellowbelly pufferfish  =========
B D                      Fugu  =========
B D                     Horse  =========
          Tibetan ground jay  =========
B D               Zebra finch  =========
  D    White-throated sparrow  =========
B D       Medium ground finch  =========
B D        American alligator  =========
B D                    Turkey  =========
B D                   Chicken  =========
  D          Peregrine falcon  =========
  D              Saker falcon  =========
  D               Rock pigeon  =========
B D                Budgerigar  =========
B D                  Platypus  =========
  D       Collared flycatcher  =========
  D  Chinese softshell turtle  =========
  D            Painted turtle  =========
B D                   Opossum  =========
B D           Tasmanian devil  =========
B D                Coelacanth  =========
  D           Green seaturtle  =========
            Brush-tailed rat  =========
                  Chinchilla  =========
B D             X. tropicalis  =========
B D                Guinea pig  =========
B D            Naked mole-rat  ---------

Inserts between block 3 and 4 in window
          Chinese tree shrew 6bp

Alignment block 4 of 784 in window, 117424560 - 117424561, 2 bps 
B D                     Human  a----t
B D                     Chimp  a----t
B D                   Gorilla  a----t
B D                 Orangutan  a----t
B D                    Gibbon  a----t
B D                    Rhesus  a----t
B D       Crab-eating macaque  a----t
B D                    Baboon  a----t
B D              Green monkey  a----t
B D                  Marmoset  a----t
B D           Squirrel monkey  a----t
B D                  Bushbaby  a----t
B D                  Squirrel  a----a
                 Prairie vole  t----t
B D           Chinese hamster  g----t
               Golden hamster  g----t
B D                     Mouse  t----t
B D                       Rat  t----t
B D                    Rabbit  a----t
B D                       Pig  a----t
B D                    Alpaca  a----t
               Bactrian camel  a----t
B D                   Dolphin  a----c
                 Killer whale  a----c
             Tibetan antelope  a----t
B D                       Cow  a----t
B D                     Sheep  a----t
                Domestic goat  a----t
B D                       Cat  gccact
B D                       Dog  gtatct
B D                   Ferret   atatct
B D                     Panda  a----t
               Pacific walrus  atatct
                 Weddell seal  atatct
             Black flying-fox  acttct
B D                   Megabat  acttct
                Big brown bat  attcct
B D                  Microbat  attcct
              Star-nosed mole  a----t
B D                  Elephant  a----t
          Cape elephant shrew  t----t
B D                   Manatee  a----t
             Cape golden mole  a----a
B D                    Tenrec  a----t
                     Aardvark  a----t
B D                 Armadillo  a----t
B D                     Shrew  ======
B D                      Pika  ======
B D                  Hedgehog  ======
B D          White rhinoceros  ======
      Lesser Egyptian jerboa  ======
        David's myotis (bat)  ======
B D                    Lizard  ======
      Yellowbelly pufferfish  ======
B D                      Fugu  ======
B D                     Horse  ======
          Tibetan ground jay  ======
B D               Zebra finch  ======
  D    White-throated sparrow  ======
B D       Medium ground finch  ======
B D        American alligator  ======
B D                    Turkey  ======
B D                   Chicken  ======
  D          Peregrine falcon  ======
  D              Saker falcon  ======
  D               Rock pigeon  ======
B D                Budgerigar  ======
B D                  Platypus  ======
  D       Collared flycatcher  ======
  D  Chinese softshell turtle  ======
  D            Painted turtle  ======
B D                   Opossum  ======
B D           Tasmanian devil  ======
B D                Coelacanth  ======
  D           Green seaturtle  ======
            Brush-tailed rat  ======
          Chinese tree shrew  ======
                  Chinchilla  ======
B D             X. tropicalis  ======
B D                Guinea pig  ======
B D            Naked mole-rat  ------

Inserts between block 4 and 5 in window
B D                   Rhesus 4bp
B D      Crab-eating macaque 4bp
B D                   Baboon 4bp
B D             Green monkey 4bp
B D                 Marmoset 4bp
B D          Squirrel monkey 4bp
B D                 Bushbaby 4bp
B D                      Pig 1bp
B D                   Alpaca 1bp
              Bactrian camel 1bp
B D                  Dolphin 1bp
                Killer whale 1bp
            Tibetan antelope 1bp
B D                      Cow 1bp
B D                    Sheep 1bp
               Domestic goat 1bp
B D                      Cat 41bp
B D                      Dog 1bp
B D                  Ferret  1bp
B D                    Panda 1bp
              Pacific walrus 1bp
                Weddell seal 1bp
            Black flying-fox 1bp
B D                  Megabat 1bp
               Big brown bat 1bp
B D                 Microbat 1bp
             Star-nosed mole 1bp

Alignment block 5 of 784 in window, 117424562 - 117424620, 59 bps 
B D                     Human  ac-------ttag--cagtaggctctgttcaagagactgaaa----agctca-catctgcc--catcaa-
B D                     Chimp  ac-------ttag--cagcaggctctgttcaagagactgaaa----agctca-catctgcc--catcaa-
B D                   Gorilla  ac-------ttag--cagcaggctctgttcaagagactgcaa----agctca-catctgcc--catcaa-
B D                 Orangutan  ac-------ttag--cagcaggctctgttcaagagactgaaa----agctca-cacctgcc--catcaa-
B D                    Gibbon  ac-------ttag--cagcaggctctgttcaagagactgaaa----agctca-cacctgcc--catcaa-
B D                    Rhesus  ac-------ttag--cagcaggctctgttcaagagactgtaa----acctct-aacctgcc--catcaa-
B D       Crab-eating macaque  ac-------ttag--cagcaggctctgttcaagagactgtaa----acctct-aacctgcc--catcaa-
B D                    Baboon  ac-------ttag--cagcagggtctgttcaagagactgtaa----acctct-aacctgcc--catcaa-
B D              Green monkey  ac-------ttag--cagcaggctctgttcaagagactataa----acctct-aacctgcc--catcaa-
B D                  Marmoset  at-------ttag--cagcaggctatgatcaagagactgaaa----aactca-cacttgcc--catcaa-
B D           Squirrel monkey  ac-------ttag--cagcaggctatgatcaagagattgaaa----aactca-cacttgcc--catcaa-
B D                  Bushbaby  aa-------ttaa--cagtaggctttgtccaagagactaaaa----aatcca-catttgcc--tatcaa-
           Chinese tree shrew  ac-------atca--cagtagtctctgttcagaaaactgaaa----aaccca-cattagcc--tatcaa-
B D                  Squirrel  ac-------ttag--cagtaggctcttt-caaaagactcaaa----aaccca-tatttgct---accaa-
                 Prairie vole  ac-------atag--actcaggctcttttcaagaggctgaaa----agcccc-aacttgcc---accaa-
B D           Chinese hamster  ac-------atag--cagcaggctcttttcaagaggctgaaa----agcccc--atttgcc---accaa-
               Golden hamster  ac-------atagcacagcaggctctttacaagaggctgaaa----agcccc--atttgcc---gccaa-
B D                     Mouse  ac-------ttag--cagttggctctttgcaagaggctgaag----cttctc--atttgcc---cacca-
B D                       Rat  ac-------ttag--cagctggctctttataagaggctgaaa----------------acc---tctcc-
B D                    Rabbit  ac-------ttac--tagacacctctgttaaagagagtgaaaaaaaaaccac--ttgtgcc---tataa-
B D                       Pig  ct-------ttat--cagtgggctcttttc----------------------------------------
B D                    Alpaca  cttacc---ttac--cagtgggctcttttc----------------------------------------
               Bactrian camel  tttacc---ttac--cagtgggctcttttc----------------------------------------
B D                   Dolphin  ct-------ttac--cagtaggctcttttc----------------------------------------
                 Killer whale  ct-------ttac--cagtaggctcttttc----------------------------------------
             Tibetan antelope  ct-------ttaa--cagaaggctcttttc----------------------------------------
B D                       Cow  ct-------ttac--cagaaggctcttttc----------------------------------------
B D                     Sheep  ct-------ttac--cagaaggctcttttc----------------------------------------
                Domestic goat  ct-------ttac--cagaaggctcttttc----------------------------------------
B D                       Cat  ct-------ttac--cagaaggtctttt------------------------------------------
B D                       Dog  ct-------ttac--cagtaggtctttt------------------------------------------
B D                   Ferret   ct-------ttac--cagtaggtctttt------------------------------------------
B D                     Panda  ct-------ttac--cagtaggtctttt------------------------------------------
               Pacific walrus  ct-------tcac--cagtaggtctttt------------------------------------------
                 Weddell seal  ct-------tcac--cagtaggtctttt------------------------------------------
             Black flying-fox  ct-------ttac--cagtaggctcttt------------------------------------------
B D                   Megabat  ct-------ttac--cagtaggctcttt------------------------------------------
                Big brown bat  ct-------ttac--cagcaggatcttt------------------------------------------
B D                  Microbat  ct-------ttag--cagcaggctgttt------------------------------------------
              Star-nosed mole  ctt------ttat--cattaggttctttt-----------------------------------------
B D                  Elephant  ---accaatttac--cagtaggctctgttcaaaaggctggaa----aacccagtgtttgcc--catcaa-
          Cape elephant shrew  ---actaag------caccaggttttgtttagagag-tagaa----aactcaatctctgcccacatcaa-
B D                   Manatee  ---actact-tag--cagtaggctctgttcaaaaggctggaa----aacccagtgtttgcc--catcaa-
             Cape golden mole  ---actt--ttta--gaatggactat----------------------ctca---tttgcc--catcaa-
B D                    Tenrec  ---acctactttg--cagtgagtt-----------------------------------ct--cgtcaag
                     Aardvark  ---acctactttg--tagtatgctctattcaagaaactggaa----aacccaatgactgtc--catcaa-
B D                 Armadillo  ---acct---tag--tattacactcagttcaagagactgaaa----aaactcaaatttgct--caataa-
B D                     Shrew  ======================================================================
B D                      Pika  ======================================================================
B D                  Hedgehog  ======================================================================
B D          White rhinoceros  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
        David's myotis (bat)  ======================================================================
B D                    Lizard  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                     Horse  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
  D    White-throated sparrow  ======================================================================
B D       Medium ground finch  ======================================================================
B D        American alligator  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D                Budgerigar  ======================================================================
B D                  Platypus  ======================================================================
  D       Collared flycatcher  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                Coelacanth  ======================================================================
  D           Green seaturtle  ======================================================================
            Brush-tailed rat  ======================================================================
                  Chinchilla  ======================================================================
B D             X. tropicalis  ======================================================================
B D                Guinea pig  ======================================================================
B D            Naked mole-rat  ----------------------------------------------------------------------

                        Human  -------------tcatat
                        Chimp  -------------tcatat
                      Gorilla  -------------tcatat
                    Orangutan  -------------ttatat
                       Gibbon  -------------tcatat
                       Rhesus  -------------tcatat
          Crab-eating macaque  -------------tcatat
                       Baboon  -------------tcatat
                 Green monkey  -------------tcatat
                     Marmoset  -------------tcatat
              Squirrel monkey  -------------ttgtat
                     Bushbaby  -------------tcaaat
           Chinese tree shrew  -------------ccatat
                     Squirrel  -------------tcatat
                 Prairie vole  -------------tcatat
              Chinese hamster  -------------tcatat
               Golden hamster  -------------tcatat
                        Mouse  -------------tcacac
                          Rat  -------------tcgaac
                       Rabbit  -----------------at
                          Pig  -------------------
                       Alpaca  -------------------
               Bactrian camel  -------------------
                      Dolphin  -------------------
                 Killer whale  -------------------
             Tibetan antelope  -------------------
                          Cow  -------------------
                        Sheep  -------------------
                Domestic goat  -------------------
                          Cat  -------------------
                          Dog  -------------------
                      Ferret   -------------------
                        Panda  -------------------
               Pacific walrus  -------------------
                 Weddell seal  -------------------
             Black flying-fox  -------------------
                      Megabat  -------------------
                Big brown bat  -------------------
                     Microbat  -------------------
              Star-nosed mole  -------------------
                     Elephant  -------------ttttac
          Cape elephant shrew  -------------tcaaaa
                      Manatee  -------------ctgtat
             Cape golden mole  -------------tcatat
                       Tenrec  agattgaaaaaccccatgt
                     Aardvark  -------------tc-tat
                    Armadillo  -------------tcatat
                        Shrew  ===================
                         Pika  ===================
                     Hedgehog  ===================
             White rhinoceros  ===================
       Lesser Egyptian jerboa  ===================
         David's myotis (bat)  ===================
                       Lizard  ===================
       Yellowbelly pufferfish  ===================
                         Fugu  ===================
                        Horse  ===================
           Tibetan ground jay  ===================
                  Zebra finch  ===================
       White-throated sparrow  ===================
          Medium ground finch  ===================
           American alligator  ===================
                       Turkey  ===================
                      Chicken  ===================
             Peregrine falcon  ===================
                 Saker falcon  ===================
                  Rock pigeon  ===================
                   Budgerigar  ===================
                     Platypus  ===================
          Collared flycatcher  ===================
     Chinese softshell turtle  ===================
               Painted turtle  ===================
                      Opossum  ===================
              Tasmanian devil  ===================
                   Coelacanth  ===================
              Green seaturtle  ===================
             Brush-tailed rat  ===================
                   Chinchilla  ===================
                X. tropicalis  ===================
                   Guinea pig  ===================
               Naked mole-rat  -------------------

Inserts between block 5 and 6 in window
            Black flying-fox 1bp
B D                  Megabat 1bp
               Big brown bat 1bp
B D                 Microbat 1bp

Alignment block 6 of 784 in window, 117424621 - 117424628, 8 bps 
B D                     Human  caagtctt
B D                     Chimp  caagtctt
B D                   Gorilla  taagtctt
B D                 Orangutan  caagtctt
B D                    Gibbon  caagtctt
B D                    Rhesus  caagtctt
B D       Crab-eating macaque  caagtctt
B D                    Baboon  caagtctt
B D              Green monkey  caagtctt
B D                  Marmoset  caagtctt
B D           Squirrel monkey  caagtctt
B D                  Bushbaby  caagtcct
           Chinese tree shrew  c-agtcct
B D                  Squirrel  ccagtcct
                 Prairie vole  taaatcct
B D           Chinese hamster  taagtcct
               Golden hamster  taagtcct
B D                     Mouse  taacccct
B D                       Rat  taacccct
B D                    Rabbit  caagtgct
B D                       Pig  -aagtcct
B D                    Alpaca  -aagtcct
               Bactrian camel  -aagtcct
B D                   Dolphin  --agtcct
                 Killer whale  --aatgct
             Tibetan antelope  -aagtcct
B D                       Cow  -aagtcct
B D                     Sheep  -aagtcct
                Domestic goat  -aagtcct
B D          White rhinoceros  caagtcct
B D                       Cat  taagtctt
B D                       Dog  caaaatct
B D                   Ferret   caagtcct
B D                     Panda  caagtcct
               Pacific walrus  taagtcct
                 Weddell seal  caagtcct
             Black flying-fox  caagtcct
B D                   Megabat  caagtcct
                Big brown bat  caagttct
B D                  Microbat  caagtcct
              Star-nosed mole  caagtcct
B D                  Elephant  caggtcct
          Cape elephant shrew  caagtact
B D                   Manatee  caggtcct
             Cape golden mole  caagtcct
B D                    Tenrec  t---tgct
                     Aardvark  caagtcct
B D                 Armadillo  caagtcct
B D                     Shrew  ========
B D                      Pika  ========
B D                  Hedgehog  ========
      Lesser Egyptian jerboa  ========
        David's myotis (bat)  ========
B D                    Lizard  ========
      Yellowbelly pufferfish  ========
B D                      Fugu  ========
B D                     Horse  ========
          Tibetan ground jay  ========
B D               Zebra finch  ========
  D    White-throated sparrow  ========
B D       Medium ground finch  ========
B D        American alligator  ========
B D                    Turkey  ========
B D                   Chicken  ========
  D          Peregrine falcon  ========
  D              Saker falcon  ========
  D               Rock pigeon  ========
B D                Budgerigar  ========
B D                  Platypus  ========
  D       Collared flycatcher  ========
  D  Chinese softshell turtle  ========
  D            Painted turtle  ========
B D                   Opossum  ========
B D           Tasmanian devil  ========
B D                Coelacanth  ========
  D           Green seaturtle  ========
            Brush-tailed rat  ========
                  Chinchilla  ========
B D             X. tropicalis  ========
B D                Guinea pig  ========
B D            Naked mole-rat  --------

Inserts between block 6 and 7 in window
                    Aardvark 198bp

Alignment block 7 of 784 in window, 117424629 - 117424665, 37 bps 
B D                     Human  aatccttcaaa----------------agc------ctctatc------acattcactgtacc---ta
B D                     Chimp  aatccttcaaa----------------agc------ctctatc------acattcactgtacc---ta
B D                   Gorilla  aatccttcaaa----------------agc------ctctatc------acattcactgtacc---ta
B D                 Orangutan  aatctttcaaa----------------agc------ctgtatc------acattcattgtacc---ta
B D                    Gibbon  aatccttcaaa----------------agc------ctctatc------acattcactgtacc---ta
B D                    Rhesus  aatccttcaaa----------------agc------ctctatc------atgttaactgtacc---ta
B D       Crab-eating macaque  aatccttcaaa----------------agc------ctctatc------atgttaactgtacc---ta
B D                    Baboon  aatccttcaaa----------------agc------ctctatc------atgttaactgtacc---ta
B D              Green monkey  aatccttcaaa----------------agc------ctctgtc------atgttaactgtacc---ta
B D                  Marmoset  aatccttcaca----------------agc------ctctgtc------gccttcactgtacc---ta
B D           Squirrel monkey  aatccttcaaa----------------agc------ctctatc------gccttcattgtacc---ta
B D                  Bushbaby  aatccttcagattaatcctaatccaagagc------cttcatc------accttcactattcc---ta
           Chinese tree shrew  catccttcaag----------------agc------ctccatc------gccttcaatatacc---ta
B D                  Squirrel  aa--------g----------------agc------ctccatc------accttcattgtc-------
                 Prairie vole  gatccatcatg----------------ttc---------tatc------aacttcaacaacac---ct
B D           Chinese hamster  aatgcctcgag----------------ttc------cttcatc------cccttcaatattcc---ta
               Golden hamster  aatacttcaca----------------tta------cttcatc------cccttcaatattcc---ta
B D                     Mouse  agtacttcatg----------------ctc------ctccagc------accctcaacattcc---ta
B D                       Rat  agtacttcacg----------------ttc------ctccatt-------------acattcc---ta
B D                    Rabbit  aatccttcatg----------------ggc------ctccatc------accttcactgtact---ta
B D                       Pig  aatccttcagc----------------agc------ctccacc------ac-ttcactgcact---ta
B D                    Alpaca  aatccttcaaa----------------agc------ctccacc------at-ttcattgcacc---ta
               Bactrian camel  aatccttcaag----------------agc------ctccacc------at-ttcattgcatc---ta
B D                   Dolphin  -----ttcaag----------------agc------ctccaac------ac-ttcagtgcacc---ta
                 Killer whale  -----ttcaag----------------agc------ctccaac------ac-ttcagtgcacc---ta
             Tibetan antelope  -----ttcaag----------------aga------ctccatc------ac-ttcactgcatc---tg
B D                       Cow  -----ttcaag----------------aga------ctccatc------ac-ttcactgtatc---ta
B D                     Sheep  -----ttcaag----------------aga------ctccatc------ac-ttcactgtatc---ta
                Domestic goat  -----ttcaag----------------aga------ctccatc------ac-ttcactgcatc---ta
B D          White rhinoceros  aatccttcagg----------------agc------ctccatc------ac-ttcactgcacc---ta
B D                       Cat  aatcctttagg----------------agc------ctccacctaaaagga-ctcaccgcact---ta
B D                       Dog  aatctttcaag----------------agc------ctccatc------at-ttcactgcacc---ta
B D                   Ferret   aatctgtcagg----------------aa-------attcatc------at-ttcactgcact---ta
B D                     Panda  aatctttcagg----------------agc------ctccatc------at-ttcaccacacc---ta
               Pacific walrus  aatctttcagg----------------agc------ctccatc------at-ttcactgcacc---ta
                 Weddell seal  aatctttcagg----------------agc------ctccatc------at-ttcactgcacc---ta
             Black flying-fox  aatccttcagg----------------agc------ccccatc------ac-attgttgcact---tt
B D                   Megabat  aatccttcagg----------------agc------ccccatc------ac-attgttgcact---tt
                Big brown bat  catccttcggg----------------agc------ctccatc------ac-ttcattgtacc---ta
B D                  Microbat  catcctgcagg----------------aga------ctccgtc------ac-ttcattgtacc---ta
              Star-nosed mole  aatccttcagg----------------aga------tgccatg------tc-tt---tgcacc---tc
B D                  Elephant  aatcttttaag----------------acc------ctccaaa------aactacattgtacc---ta
          Cape elephant shrew  aatgtttttag----------------agc------ctccata------atc-------tact---ca
B D                   Manatee  aatc-tttaag----------------acc------ctccgtg------acctacattgtacc---ta
             Cape golden mole  aatctttgaag----------------tct--------ccata------acctacattttacctctta
B D                    Tenrec  aatcattgagt----------------act----------ata------acctacattgtacctcata
                     Aardvark  aatcttttaag----------------agc------ctccatt------atgtatgttgtacc---ta
B D                 Armadillo  aatacttcaag----------------atcaagatcctccata------atctttatagcacc---ta
B D                     Shrew  ====================================================================
B D                      Pika  ====================================================================
B D                  Hedgehog  ====================================================================
      Lesser Egyptian jerboa  ====================================================================
        David's myotis (bat)  ====================================================================
B D                    Lizard  ====================================================================
      Yellowbelly pufferfish  ====================================================================
B D                      Fugu  ====================================================================
B D                     Horse  ====================================================================
          Tibetan ground jay  ====================================================================
B D               Zebra finch  ====================================================================
  D    White-throated sparrow  ====================================================================
B D       Medium ground finch  ====================================================================
B D        American alligator  ====================================================================
B D                    Turkey  ====================================================================
B D                   Chicken  ====================================================================
  D          Peregrine falcon  ====================================================================
  D              Saker falcon  ====================================================================
  D               Rock pigeon  ====================================================================
B D                Budgerigar  ====================================================================
B D                  Platypus  ====================================================================
  D       Collared flycatcher  ====================================================================
  D  Chinese softshell turtle  ====================================================================
  D            Painted turtle  ====================================================================
B D                   Opossum  ====================================================================
B D           Tasmanian devil  ====================================================================
B D                Coelacanth  ====================================================================
  D           Green seaturtle  ====================================================================
            Brush-tailed rat  ====================================================================
                  Chinchilla  ====================================================================
B D             X. tropicalis  ====================================================================
B D                Guinea pig  ====================================================================
B D            Naked mole-rat  --------------------------------------------------------------------

Inserts between block 7 and 8 in window
          Chinese tree shrew 326bp

Alignment block 8 of 784 in window, 117424666 - 117424868, 203 bps 
B D                     Human  gtcccactac-------------------tcctaa-ggcaaattt----tcttttc-----t-a------
B D                     Chimp  gtcccactac-------------------tcctaa-ggcaaattt----tcttttc-----t-a------
B D                   Gorilla  gtcccactac-------------------tcctaa-ggcaaattt----tcttttc-----t-a------
B D                 Orangutan  gtcccactac-------------------tcctaa-ggcaaattt----tcttttc-----t-a------
B D                    Gibbon  gtcccactac-------------------tcttaa-ggcaaattt----tcttttc-----t-a------
B D                    Rhesus  gtcccattac-------------------tcctaa-ggcaaattt----tcttttc-----t-a------
B D       Crab-eating macaque  gtcccattac-------------------tcctaa-ggcaaattt----tcttttc-----t-a------
B D                    Baboon  gtcccattac-------------------tcctaa-ggcaaattt----tcttttc-----t-a------
B D              Green monkey  gtcccattac-------------------tcctaa-ggcaaattt----tcttttc-----t-a------
B D                  Marmoset  gtcccactac-------------------t-ccaa-ggcaaattt----tcttttc-----t-a------
B D           Squirrel monkey  gtgccactac-------------------tcccaa-ggcagattt----tcttttc-----t-a------
B D                  Bushbaby  accccttcac-------------------tcccaa-tgcagattc----tcttttc-----t-g------
           Chinese tree shrew  gcttcactat-------------------tcataa-ggcaaattc----tctttac-----t-a------
B D                  Squirrel  ------ctat-------------------tcccag-gacaaattt----ctttctc-----t-aaaaaaa
                 Prairie vole  gtcctgctat-------------------tctgag-gacaaattc----tcttctc-----t-a------
B D           Chinese hamster  gtcccactat-------------------tctgag-gctaaattc----tcttctc-----t-a------
               Golden hamster  gtccctctat-------------------tctgag-gccaaattc----tcttctc-----t-a------
B D                     Mouse  gtcacactat-------------------tctgagaaaaaaattc----tcttttc-----t-g------
B D                       Rat  gtcccactat-------------------tctgag-aatgaattc----tcttttc-----t-g------
B D                    Rabbit  ctcccactaa-------------------cacaag-g-taaattc----tcttttc-----t-a------
B D                       Pig  gtcccactac-------------------tcccaa-agcaaactc----tctttcc-----t-a------
B D                    Alpaca  gtcccactac-------------------tcccaa-ggcaaactc----tcttttc-----taa------
               Bactrian camel  gtcccactac-------------------tcccaa-ggcaaactc----tcttttc-----taa------
B D                   Dolphin  gtcccactac-------------------tcccaa-ggcaaactc----acttttc-----t-a------
                 Killer whale  gtcccactac-------------------tcccaa-ggcaaactc----acttttc-----t-a------
             Tibetan antelope  gtcccactac-------------------tcccaa-gacaagctc----tcttttc-----t-a------
B D                       Cow  gtcccacta---------------------cccaa-gacaagctc----tcttttc-----t-a------
B D                     Sheep  gtcccactac-------------------tcccaa-gacaagctc----tcttttc-----t-a------
                Domestic goat  gtcccactac-------------------tcccaa-gacaagctc----tcttttc-----t-g------
B D          White rhinoceros  gtcccactac-------------------tctcaa-ggccaactc----tcttttc-----t-a------
B D                       Cat  gtcccattac----------aaaatgaagccccaa-ggc-agctc----tcttttc-----t-a------
B D                       Dog  gttttactgc----------aaactcaagccccat-ggtaaattc----tcttttc-----t-a------
B D                   Ferret   gtcctactac----------aaactcatgccccat-ggtaaattc----tcttttc-----t-a------
B D                     Panda  gtcctactacttgagtcctgcaactcaggccccaa-agcaaatta----tcttttc-----t-a------
               Pacific walrus  gtcctactac----------aaactcaagccccaa-ggcgaattc----tcttttc-----t-a------
                 Weddell seal  gtcctactac----------aaactcaagccccaa-ggcaaattc----tcttttc-----t-a------
             Black flying-fox  gtcccactgc-------------------tcctaa-ggcaagttc----tcttttc-----a-a------
B D                   Megabat  gtcccactgc-------------------tcctaa-ggcaagttc----tcttttc-----a-a------
                Big brown bat  gtcccactac-------------------tcctaa-ggcaaactc----tcttttc-----t-a------
B D                  Microbat  gtcccactac-------------------tcctaa-ggcaaagtc----tcttttc-----t-a------
              Star-nosed mole  ataccactac-------------------tcccat-g--caactc----tcttttc-----t-g------
B D                  Elephant  tttccactac-------------------tcccaa-gacaactct-cttgtttttc-----t-a------
          Cape elephant shrew  tatcccctac-------------------tcccaa-gttaattat-ctttttttcccccttt-a------
B D                   Manatee  tttccg-tac-------------------tcccaa-gacaactctatttgttcttc-----t-a------
             Cape golden mole  tttccactat-------------------tcccaa-gacaa--tt-tttagttttt-----t-c------
B D                    Tenrec  tttccattag-------------------tcccaa-cataactct-ctttatcgtc-----a-c------
                     Aardvark  tttccagtac-------------------tccaaa-gacaactct--ttgtttttc-----t-a------
B D                 Armadillo  ttcccactat-------------------tccata-ggcaaatac----tattttc-----t-a------
B D                     Shrew  ======================================================================
B D                      Pika  ======================================================================
B D                  Hedgehog  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
        David's myotis (bat)  ======================================================================
B D                    Lizard  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                     Horse  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
  D    White-throated sparrow  ======================================================================
B D       Medium ground finch  ======================================================================
B D        American alligator  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D                Budgerigar  ======================================================================
B D                  Platypus  ======================================================================
  D       Collared flycatcher  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                Coelacanth  ======================================================================
  D           Green seaturtle  ======================================================================
            Brush-tailed rat  ======================================================================
                  Chinchilla  ======================================================================
B D             X. tropicalis  ======================================================================
B D                Guinea pig  ======================================================================
B D            Naked mole-rat  ----------------------------------------------------------------------

                        Human  -----------aaacaaa---tctc-tgccta-ttccacccc-------------------atgctatgt
                        Chimp  -----------aaacaaa---tctc-tgccta-ttccacccc-------------------atgctatgt
                      Gorilla  -----------aaacaaa---tctc-tgccta-ttccacccc-------------------atgctatgt
                    Orangutan  -----------aaacaaa---tctc-tgccta-ttccacccc-------------------atgctatgt
                       Gibbon  -----------aaacaaa---tctc-tgccta-ttccacccc-------------------atgctatgt
                       Rhesus  -----------aaacaaa---tctc-tgctta-ttccacccc-------------------atgctatgt
          Crab-eating macaque  -----------aaacaaa---tctc-tgctta-ttccacccc-------------------atgctatgt
                       Baboon  -----------aaacaaa---tctc-tgctta-tttcacccc-------------------atgctatgt
                 Green monkey  ---------------aaa---tctc-tgctta-ttccacccc-------------------atgctatgt
                     Marmoset  -----------aaacaaa---tctc-tgtcta-ttccacccc-------------------atgctatgt
              Squirrel monkey  -----------aaacaaa---tctc-tgccta-ttccacccc-------------------atgctatgt
                     Bushbaby  -----------caacaga---t-tt-tcccca-ttccaccccata--------------caatactatgt
           Chinese tree shrew  ------------gataaa---tttc-tgccta-ttccaccccatc--------------caatactatac
                     Squirrel  aaaaaaaaaaaaaaaaaa---atcc-tgccta-ttctactccatc--------------caaaactacaa
                 Prairie vole  ---------------aaa---cttc-tgccta-tcctacccc-at--------------tattactatgc
              Chinese hamster  ---------------aaa---cttc-tgccta-ctctacccc-at--------------tatcactgtgc
               Golden hamster  ---------------aaa---cttc-tgccta-ttctacgcc-at--------------tattactatgc
                        Mouse  -----------aaacaaa---cgtc-tgccta-ttctaccccaac--------------tatcaccatgc
                          Rat  -----------aatcaaa---cgtc-tgccta-ttattccctaat--------------tatcattatgt
                       Rabbit  -----------aagcaaa---tttc-tgtctactccttccccatc--------------taaaactatgt
                          Pig  -----------atataaa---tttc-taccta-ttccatcccatccaacactgcgcacacaacactgcgc
                       Alpaca  -----------aaacgaa---tttc-tgcctg-ttccatcccacc--------------caactttatgc
               Bactrian camel  -----------aaacgaa---tttc-tgccta-ttccatcccacc--------------caactttatgc
                      Dolphin  -----------aaacaaa---tttc-tgccta-ttccatcccatc--------------caacactatgc
                 Killer whale  -----------aaacaaa---tttc-tgccta-ttccatcccatc--------------caacactatgc
             Tibetan antelope  -----------aaagaaa---tttc-tgccta-ttccatcccatc--------------caacactatgc
                          Cow  -----------aaagaaa---tttc-tgccta-ttccatcccatc--------------caacattatgc
                        Sheep  -----------aaagaaa---tttc-tgccta-ttccatcccatc--------------caacactatgc
                Domestic goat  -----------aaagaaa---tttc-tgccta-ttccatcccatc--------------taacactatgc
             White rhinoceros  -----------aaacaaa---tttc-tgccta-ttccaacccatc--------------caacgctatgc
                          Cat  -----------aagcaaa---tttc-tgcctt-ttccattcccct--------------cagcattatgc
                          Dog  -----------aagcaaa---tttc-tgccta-ttccatcccaac--------------cagcactatgc
                      Ferret   -----------aaacaaa---tttc-taacta-ttctatcccatc--------------cagcactatgc
                        Panda  -----------aaacaca---tttc-taacta-ttccatccaatc--------------cagcactatgc
               Pacific walrus  -----------aaacgaa---tttc-taacta-ttccatcccatc--------------cagcactatgc
                 Weddell seal  -----------aaacaaa---tttt-taacta-ttccatcccatc--------------cagcactatgc
             Black flying-fox  -----------aaacaaa---tttc-ttccta-ttccatcacatc--------------caacactatgc
                      Megabat  -----------aaacaaa---attctttccta-ttccatcacatc--------------caacactatgc
                Big brown bat  -----------aaacaaa---tttc-tgccta-ttacatcacatc--------------caacactatgt
                     Microbat  -----------aaacaaa---tttc-tgccta-ttacatcgcatc--------------caacactatgt
              Star-nosed mole  -----------caacaac---tttc-tgccta-cttggtcccatt--------------taacaacatgt
                     Elephant  -----------aaacaaa---tgtc-tgccta-atccaccccatc--------------caacattatgt
          Cape elephant shrew  -----------aaaccca---tttc-tgtcta-ttccatcctatc--------------catcttcatg-
                      Manatee  -----------aaacaaa---tttc-tgccca-ttccaccccatc--------------caacactaagt
             Cape golden mole  -----------aacgaatttatacc-ta--ta-ttcaacacaatc--------------caacataatgc
                       Tenrec  -----------aatacat---tatc-tagcta-ttccaccccatc--------------caacataatga
                     Aardvark  -----------aaagaaa---tttc-ggccta-ttccaccccatc--------------caacattaagc
                    Armadillo  -----------aaacaaa---tttc-taccta-ttttacctcatc--------------caacattatgt
                        Shrew  ======================================================================
                         Pika  ======================================================================
                     Hedgehog  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
         David's myotis (bat)  ======================================================================
                       Lizard  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                        Horse  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
          Medium ground finch  ======================================================================
           American alligator  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Collared flycatcher  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================
                   Coelacanth  ======================================================================
              Green seaturtle  ======================================================================
             Brush-tailed rat  ======================================================================
                   Chinchilla  ======================================================================
                X. tropicalis  ======================================================================
                   Guinea pig  ======================================================================
               Naked mole-rat  ----------------------------------------------------------------------

                        Human  acact--at---acatatattaa-----------------------tatt-aggta--------------
                        Chimp  acact--at---acatatattaa-----------------------tatt-aggta--------------
                      Gorilla  acact--at---acatatattaa-----------------------tatt-aggta--------------
                    Orangutan  acact--at---acatatattaa-----------------------tatt-aggta--------------
                       Gibbon  acact--at---acatatattaa-----------------------tatt-aggta--------------
                       Rhesus  acact--at---acatatattaa-----------------------catt-aggta--------------
          Crab-eating macaque  acact--at---acatatattaa-----------------------catt-aggta--------------
                       Baboon  acact--at---acatatattaa-----------------------catt-aggta--------------
                 Green monkey  atact--at---acatatattaa-----------------------catt-aggta--------------
                     Marmoset  acact--at---acatatattag-----------------------tatt-aggta--------------
              Squirrel monkey  acact--ac---atatatattag-----------------------tatt-agata--------------
                     Bushbaby  acact--aa---acatatattaa-----------------------tatt-aggta--------------
           Chinese tree shrew  acact--ac---acat--------------------------------------ta--------------
                     Squirrel  acacc--at---acatacagtca-----------------------tatt-agtta--------------
                 Prairie vole  tcact--at---ccatacattca-----------------------tatt-atata--------------
              Chinese hamster  tcact--ac---acacgcattca-----------------------tatc-atata--------------
               Golden hamster  tcatt--ac---acatacattca-----------------------tatc-atata--------------
                        Mouse  tcagt--ac---atgtac-----------------------------------acg--------------
                          Rat  tcact--ac---a---------------------------------------------------------
                       Rabbit  atact--at---atataaattta-----------------------tatt-aaata--------------
                          Pig  acact-cct---gcatgtgtgca-----------------------tatcctagta--------------
                       Alpaca  acact-ccc---gcttgtgtcca-----------------------tatcatagta--------------
               Bactrian camel  acact-ccc---acgtgtgtcca-----------------------tatcctagta--------------
                      Dolphin  acact-cct---gcacgtgttca-----------------------tatcctagta--------------
                 Killer whale  acact-cct---gcacgtgttca-----------------------tatcctagta--------------
             Tibetan antelope  acact-cct---gcatgtactca-----------------------tatc---gta--------------
                          Cow  acact-cct---gcatgtattca-----------------------tattctagta--------------
                        Sheep  acact-cct---gcatgtactca-----------------------tatcctagta--------------
                Domestic goat  acact-cct---gcatgtactca-----------------------tatcctagta--------------
             White rhinoceros  acact-cct---gcatgtgttca-----------------------tatt-agata--------------
                          Cat  acgct-cct---gtctatgttca-----------------------tatt-aagca--------------
                          Dog  acgct-ctc---gcatgtgttca-----------------------tatt-aggta--------------
                      Ferret   acact-cct---gcatgtgttca-----------------------tatt-aggta--------------
                        Panda  acact-cct---gcaagtgttca-----------------------tatt-aggtg--------------
               Pacific walrus  acact-cct---gcatgtgttca-----------------------tatt-aggta--------------
                 Weddell seal  acact-cct---gcatgtgttca-----------------------tact--ggta--------------
             Black flying-fox  acact-tct---gcatgtgttta-----------------------aatt-cagca--------------
                      Megabat  acact-tct---gcatgtgttta-----------------------aatt-cagca--------------
                Big brown bat  gcattcttt---gcatgtgttta-----------------------tgtt-aggta--------------
                     Microbat  gcattcttt---gcatgtgctta-----------------------tgtt-aggta--------------
              Star-nosed mole  acatt-ctcttgggatgtattca-----------------------tatt-aggta--------------
                     Elephant  acact-cct---gtatatgttca-----------------------tacc-aggta--------------
          Cape elephant shrew  ------cct---at-tacattca-----------------------tact-aggta--------------
                      Manatee  acact-cct---gtacatgtaca-----------------------cact-aggta--------------
             Cape golden mole  acact-tct---acatgtccttactaagctgttgttaagtgttgtcaagt-cggtagcaaccctatatag
                       Tenrec  acatt-ctt---gcacatgctca-----------------------gagt-aggta--------------
                     Aardvark  acact-cct---gcatatgttca-----------------------tagt-aagta--------------
                    Armadillo  acatt-cca---ccatgtgttca-----------------------tagt-aggta--------------
                        Shrew  ======================================================================
                         Pika  ======================================================================
                     Hedgehog  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
         David's myotis (bat)  ======================================================================
                       Lizard  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                        Horse  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
          Medium ground finch  ======================================================================
           American alligator  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Collared flycatcher  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================
                   Coelacanth  ======================================================================
              Green seaturtle  ======================================================================
             Brush-tailed rat  ======================================================================
                   Chinchilla  ======================================================================
                X. tropicalis  ======================================================================
                   Guinea pig  ======================================================================
               Naked mole-rat  ----------------------------------------------------------------------

                        Human  ---t-tcg-ggcct----------------------------------------------------ctt-
                        Chimp  ---t-tcg-ggcct----------------------------------------------------ctt-
                      Gorilla  ---t-tcg-ggcct----------------------------------------------------ctt-
                    Orangutan  ---t-ttg-ggcct----------------------------------------------------cct-
                       Gibbon  ---t-tcg-ggcct----------------------------------------------------ctt-
                       Rhesus  ---t-tca-ggcct----------------------------------------------------ctt-
          Crab-eating macaque  ---t-tca-ggcct----------------------------------------------------ctt-
                       Baboon  ---t-tca-ggcct----------------------------------------------------ctt-
                 Green monkey  ---t-tca-ggcct----------------------------------------------------ctt-
                     Marmoset  ---t-tca-ggcct----------------------------------------------------ctt-
              Squirrel monkey  ---t-tca-ggcct----------------------------------------------------ctt-
                     Bushbaby  ---t-gca-ggcct----------------------------------------------------ctt-
           Chinese tree shrew  ---t-tcagggcct----------------------------------------------------ctt-
                     Squirrel  ---t-tct-ggcct----------------------------------------------------ctt-
                 Prairie vole  ---t-cca-gacct----------------------------------------------------cttt
              Chinese hamster  ---t-aca-gtcct----------------------------------------------------ctta
               Golden hamster  ---t-cca-gtcct----------------------------------------------------ccta
                        Mouse  ---t-cca-gtcct----------------------------------------------------ctaa
                          Rat  -------a-gtcct----------------------------------------------------caga
                       Rabbit  ---t-tta-ggctt----------------------------------------------------ct--
                          Pig  ---t-t-a-gtcct----------------------------------------------------ct--
                       Alpaca  ---t-t-a-gacct----------------------------------------------------cc--
               Bactrian camel  ---t-t-a-gacct----------------------------------------------------cc--
                      Dolphin  ---t-t-c-ggcct----------------------------------------------------ct--
                 Killer whale  ---t-t-a-ggcct----------------------------------------------------ct--
             Tibetan antelope  ---t-t-a-gatct----------------------------------------------------ct--
                          Cow  ---t-t-a-gacct----------------------------------------------------ct--
                        Sheep  ---t-t-a-gatct----------------------------------------------------ct--
                Domestic goat  ---t-t-a-ggtct----------------------------------------------------ct--
             White rhinoceros  ---t-t-a-ggtct----------------------------------------------------ct--
                          Cat  ---t-t-a-ggcct----------------------------------------------------gt--
                          Dog  ---t-t-a-ggcct----------------------------------------------------gt--
                      Ferret   ---t-t-a-agcct----------------------------------------------------gt--
                        Panda  ---t-t-a-agcct----------------------------------------------------gt--
               Pacific walrus  ---t-t-a-agcct----------------------------------------------------gt--
                 Weddell seal  ---t-t-a-aggct----------------------------------------------------gt--
             Black flying-fox  ---a-t-a-ggcct----------------------------------------------------ct--
                      Megabat  ---a-t-a-ggcct----------------------------------------------------ct--
                Big brown bat  ---t-t-a-ggtct----------------------------------------------------cg--
                     Microbat  ---t-t-a-ggccc----------------------------------------------------tg--
              Star-nosed mole  ---tcc-a-ggtct----------------------------------------------------ct--
                     Elephant  ---t-tca-gaacc----------------------------------------------------ta--
          Cape elephant shrew  ---t-tca-ggact----------------------------------------------------ta--
                      Manatee  ---t-tca-ggact----------------------------------------------------ta--
             Cape golden mole  ggtt-ttc-gagtggctggtgagcttgaactgcctaccttgctgttcaaacagatcttgcaagacttc--
                       Tenrec  ---t-ttg-ggacg-----------------------------------------------------c--
                     Aardvark  ---t-tca-gaact----------------------------------------------------ta--
                    Armadillo  ---t-tta-ggact----------------------------------------------------cc--
                        Shrew  ======================================================================
                         Pika  ======================================================================
                     Hedgehog  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
         David's myotis (bat)  ======================================================================
                       Lizard  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                        Horse  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
          Medium ground finch  ======================================================================
           American alligator  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Collared flycatcher  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================
                   Coelacanth  ======================================================================
              Green seaturtle  ======================================================================
             Brush-tailed rat  ======================================================================
                   Chinchilla  ======================================================================
                X. tropicalis  ======================================================================
                   Guinea pig  ======================================================================
               Naked mole-rat  ----------------------------------------------------------------------

                        Human  tcta------cttattcagagtttattcaatttcgtttttcaattccaaa------ctcaagttccat--
                        Chimp  tcta------cttattcagagtttattcaattttgtttttcaattccaaa------ctcaagttccat--
                      Gorilla  tcta------cttattcagagtttattcaatttcgtttttcaattccaaa------ctcaagttccat--
                    Orangutan  tcta------cttattcagagtttattcaacttcatttttcaattccaaa------ctcaagttccat--
                       Gibbon  tcta------cttattcagagtttattcaatttcgtttttcaattcaaaa------ctcaagttccag--
                       Rhesus  tcta------cttattcagagtttattcaatttcatttttcaattacaaa------ctcaagttccac--
          Crab-eating macaque  tcta------cttattcagagtttattcaatttcatttttcaattacaaa------ctcaagttccac--
                       Baboon  tcta------cttattcagaatttattcaatttcatttttcaattacaaa------ctcaagttccac--
                 Green monkey  tcta------cttattcagagtttattcaatttcatttttcaattacaaa------ctcaagttccac--
                     Marmoset  tcca------cttactc--agtttattcaatttcattctttaattacaaa------ctcaagttccat--
              Squirrel monkey  tcca------cttattcagagtttattcaatttcattctttaattacaaa------ctcaaattccat--
                     Bushbaby  tccc------cttactcaaattttatttgttatcattcttcaattacaaa------ctcaagttccat--
           Chinese tree shrew  tcca------cttactg-----------aatttcatccttcaattacaaa------ctcaagttccattt
                     Squirrel  tctc------cttattcaaatttcattcaagttcattcttcaaatagaaa------cccaagttccacca
                 Prairie vole  attc------cttattgaa------------------ctccaagt-gagt------aacaaggtccagtg
              Chinese hamster  tttc------cttattgaaatggtattgac----cttcatcaagt-gagt------cacaaggtccagcg
               Golden hamster  gttc------cttatcaaaaccgtattgaa----cttcatcaagt-gagt------atcaaggtccaatg
                        Mouse  tttc------cttatttaactcttattgaa----cattgtcaggt-gaat------agcaaa--------
                          Rat  tttc------cttatttaactcttattgaa----cattgtcaggt-gaat------atcaaagttcagca
                       Rabbit  tttc------actatttaaattttattcaa----ttccattaattacaaa------ctcaagccacattg
                          Pig  ttta------attattcaaattttattcgatttaattcttcacttaggaa------ctcaagttctat--
                       Alpaca  ttca------attattcaaattttattcaacttaattcttcaattatgaa------ctcaagtgccac--
               Bactrian camel  ttca------attattcaaattttattcaacttaattcttcaattatgaa------ctcaagtgccac--
                      Dolphin  ttca------attattccaattttattcaatttaattttttaattacaaa------ttcaagttccat--
                 Killer whale  ttca------attattccaattttattcaatttaattttttaattacaaa------ttcaagttccat--
             Tibetan antelope  ttca------attattcaaatttt-----atttaattctttacctatgaa------ctcaagtttcat--
                          Cow  ttca------attattcaaatttt-----atttaattctttacctatgaactcaagctcaagttccat--
                        Sheep  ttca------attattcaaatttt-----atttaattctttacctatgaa------ctgaagttccat--
                Domestic goat  ttca------attattcaaatttt-----atttaattctttacctatgaa------ctcaagttccat--
             White rhinoceros  ttta------attattcaaattttattaaacatcattcttcaattacaaa------ctctagtttcat--
                          Cat  ttct------attactcaaattttatacagtttcattcttcaattacaaa------ttcaagttctat--
                          Dog  ttca------attattcaaattttatt--gtttcattcttcaattacaaa------ctcaagctccat--
                      Ferret   ttca------attactcaaattttatttcatttcattcttcaatt--aaa------ctcaagttccat--
                        Panda  ttca------attattcaaattttatttagtttcattcttcaattacaaa------ctcaagttccat--
               Pacific walrus  ttca------attattcaaattttatttagtttcattcttcaattacaaa------ctcaagttccac--
                 Weddell seal  ttca------atcattcaaattttatttagtttcattcttcaattacaag------ctcaagttccac--
             Black flying-fox  ttcg------attattcaaatcttatccaatttcattcttcaattacaaa------ctcaagttccac--
                      Megabat  ttcg------attattcaaatcttatccaatttcattcttcaattacaaa------ctcaagttccac--
                Big brown bat  ttta------attatctgaatttcatccaatttcattcttcacttac-aa------ctcaagttccat--
                     Microbat  ttta------attattcgaatttcatccaatttcattcttcacttac-tt------ctcaagttctat--
              Star-nosed mole  ttcaaattttatcattcaaatttta-------------ttctattacaaa------cttaagttcca---
                     Elephant  ttca------aa------------------tttcagtcttcaattacaaa------ctcatgtttcat--
          Cape elephant shrew  ccca------cc-----------------tttttactctacaactacaaa------ctcatgttcttg--
                      Manatee  ttca------aa------------------ttttacccttcaattacaaa------ctcatgttctgt--
             Cape golden mole  ttca------aa------------------ttttagtctttaattataaa------ctcacgttcca---
                       Tenrec  tcca------ca------------------ttttactcttcaattacaag------ctcacattctgt--
                     Aardvark  ttca------aa----------------------------------------------------------
                    Armadillo  ttag------ccttat-------------tttttactcttcaactacaaa------ctcaagttccat--
                        Shrew  ======================================================================
                         Pika  ======================================================================
                     Hedgehog  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
         David's myotis (bat)  ======================================================================
                       Lizard  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                        Horse  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
          Medium ground finch  ======================================================================
           American alligator  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Collared flycatcher  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================
                   Coelacanth  ======================================================================
              Green seaturtle  ======================================================================
             Brush-tailed rat  ======================================================================
                   Chinchilla  ======================================================================
                X. tropicalis  ======================================================================
                   Guinea pig  ======================================================================
               Naked mole-rat  ----------------------------------------------------------------------

                        Human  --tgtc----caaaaagtcatacagat------ccttctcatttct------------------------
                        Chimp  --tgtc----caaaaagtcatacagat------ccttctcatttct------------------------
                      Gorilla  --tgtc----caaaaagtcatacagat------ccttctcatttct------------------------
                    Orangutan  --tgtc----caaaaagtcaaactgat------ccttctcatttct------------------------
                       Gibbon  --tgtc----caaaaagtcatacagat------ccttctcatttct------------------------
                       Rhesus  --tgtc----caaaaagtcatacagat------ccttctcatatct------------------------
          Crab-eating macaque  --tgtc----caaaaagtcatacagat------ccttctcatatct------------------------
                       Baboon  --tgtc----caaaaagtcatacagat------ccttctcatatct------------------------
                 Green monkey  --tgtc----caaaaagtcatacagat------ccttctcatatct------------------------
                     Marmoset  --tgtc----caaaaagtcatacggat------ccttctcatttct------------------------
              Squirrel monkey  --tgtc----caacaagtcatacagat------ccttctcatttct------------------------
                     Bushbaby  --tgtctgttcacaaaatcatacagat------cattctcatttgt------------------------
           Chinese tree shrew  actgtc------aaaagtcatacagat------ccttctctgtt--------------------------
                     Squirrel  tctgtc----caccaaatcaaacat--------ctttttcatttgc------------------------
                 Prairie vole  tttgtt----cac-aagtaagacagaa------cttcctcatctgt------------------------
              Chinese hamster  tttgtt----cacaaagtgagacagag------cttcctcattggt------------------------
               Golden hamster  tttgtc----cacaaagtgagaccgag------cttcctcatctgt------------------------
                        Mouse  ---------------------------------cttccccatttgt------------------------
                          Rat  tttgtt----tacaaagtgagacagatcttcttcttttgcatttgt------------------------
                       Rabbit  tctgtt----cacaaagctagacagat------ccttatcattttg------------------------
                          Pig  --tgta----cac--agtcacaca-gt------c---cttatttgt------------------------
                       Alpaca  --tgtc----cgcaaagtcatatg-at------ccttcttatttgttacaacagctaatatttatataat
               Bactrian camel  --tgtc----cacaaagtcatatg-at------ccttcttatttgt------------------------
                      Dolphin  --tgtc----cacaaagccacacg-at------ccttcttacttgt------------------------
                 Killer whale  --tgtc----cacaaagtcacacg-at------ccttcttacttgt------------------------
             Tibetan antelope  --tgtc----cataaagtcacaca-at------c---cttacttgg------------------------
                          Cow  --tgtc----cataaagtcacaca-at------c---cttacttgt------------------------
                        Sheep  --tgtc----cataaagtcacaca-at------c---cttacttgg------------------------
                Domestic goat  --tgtc----cataaagtcacaca-at------c---cttacttgg------------------------
             White rhinoceros  --tgtc----cacaaagtcacacagat------tcttctcttttgt------------------------
                          Cat  --tgtc----cacaaagtcacacag------------cttttctgt------------------------
                          Dog  --tatc----cacaaagtcacacagat------ccttcttttttgt------------------------
                      Ferret   --tgtc----cacaaagtcacacagaa------ccttcttttttgt------------------------
                        Panda  --tgtc----cac--agtcacacaaat------ccttcttttttgt------------------------
               Pacific walrus  --tgtc----cacaaagtcacacagat------ccttcttttttgt------------------------
                 Weddell seal  --tgtc----cacaaagtcacacagat------ccttcttttttgt------------------------
             Black flying-fox  --tgtc----cacaaagtcacacgga--------ttcttcttttgt------------------------
                      Megabat  --tgtc----cacaaagttacacgga--------ttcttcttttgt------------------------
                Big brown bat  --tgtc----cacaaattcacataaa-----------cttatttgt------------------------
                     Microbat  --tgtc----caaaaattcacataaaa------ctcttttttttgt------------------------
              Star-nosed mole  --tgcc----cacagag------agat------tcatttcatttgtt-----------------------
                     Elephant  --tgtt----cccaaagtcacatagat------ccttctcacatgt------------------------
          Cape elephant shrew  --tgtt----tataaactca-gcagaa------ccttctcaggtgt------------------------
                      Manatee  --tgtt----cacaaagtcacacagat------ccttctcatgtgt------------------------
             Cape golden mole  --tgct----ggc--agccacacagat------ccttctcaagtgt------------------------
                       Tenrec  --tgtt----caccaagtcatatagat------gcttctcacgtgt------------------------
                     Aardvark  ----------------gtcacatagct------ccttctcagataa------------------------
                    Armadillo  --tgt------------tcacagagat------ccttctcatttgt------------------------
                        Shrew  ======================================================================
                         Pika  ======================================================================
                     Hedgehog  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
         David's myotis (bat)  ======================================================================
                       Lizard  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                        Horse  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
          Medium ground finch  ======================================================================
           American alligator  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Collared flycatcher  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================
                   Coelacanth  ======================================================================
              Green seaturtle  ======================================================================
             Brush-tailed rat  ======================================================================
                   Chinchilla  ======================================================================
                X. tropicalis  ======================================================================
                   Guinea pig  ======================================================================
               Naked mole-rat  ----------------------------------------------------------------------

                        Human  ------------tataa
                        Chimp  ------------tataa
                      Gorilla  ------------tataa
                    Orangutan  ------------tgtaa
                       Gibbon  ------------tgtaa
                       Rhesus  ------------tacac
          Crab-eating macaque  ------------tacac
                       Baboon  ------------tacaa
                 Green monkey  ------------tacaa
                     Marmoset  ------------tacaa
              Squirrel monkey  ------------tacaa
                     Bushbaby  ------------taca-
           Chinese tree shrew  -----------------
                     Squirrel  ------------t--aa
                 Prairie vole  ------------tacaa
              Chinese hamster  ------------tacaa
               Golden hamster  ------------t-caa
                        Mouse  ------------tacaa
                          Rat  ------------tacaa
                       Rabbit  ------------ctcaa
                          Pig  ------------t----
                       Alpaca  gcctacatgccct----
               Bactrian camel  ------------t----
                      Dolphin  ------------t----
                 Killer whale  ------------t----
             Tibetan antelope  ------------t----
                          Cow  ------------t----
                        Sheep  ------------t----
                Domestic goat  ------------t----
             White rhinoceros  ------------t----
                          Cat  ------------t----
                          Dog  ------------t----
                      Ferret   ------------t----
                        Panda  ------------t----
               Pacific walrus  ------------t----
                 Weddell seal  ------------t----
             Black flying-fox  ------------t----
                      Megabat  ------------t----
                Big brown bat  ------------t----
                     Microbat  ------------t----
              Star-nosed mole  ------------t----
                     Elephant  ------------tacca
          Cape elephant shrew  ------------tctaa
                      Manatee  ------------tacaa
             Cape golden mole  ------------taag-
                       Tenrec  ------------taaaa
                     Aardvark  -----------------
                    Armadillo  ------------tatca
                        Shrew  =================
                         Pika  =================
                     Hedgehog  =================
       Lesser Egyptian jerboa  =================
         David's myotis (bat)  =================
                       Lizard  =================
       Yellowbelly pufferfish  =================
                         Fugu  =================
                        Horse  =================
           Tibetan ground jay  =================
                  Zebra finch  =================
       White-throated sparrow  =================
          Medium ground finch  =================
           American alligator  =================
                       Turkey  =================
                      Chicken  =================
             Peregrine falcon  =================
                 Saker falcon  =================
                  Rock pigeon  =================
                   Budgerigar  =================
                     Platypus  =================
          Collared flycatcher  =================
     Chinese softshell turtle  =================
               Painted turtle  =================
                      Opossum  =================
              Tasmanian devil  =================
                   Coelacanth  =================
              Green seaturtle  =================
             Brush-tailed rat  =================
                   Chinchilla  =================
                X. tropicalis  =================
                   Guinea pig  =================
               Naked mole-rat  -----------------

Inserts between block 8 and 9 in window
         Cape elephant shrew 1274bp

Alignment block 9 of 784 in window, 117424869 - 117424881, 13 bps 
B D                     Human  gaataacaggtaa
B D                     Chimp  gaataacaggtaa
B D                   Gorilla  gaataacaggtaa
B D                 Orangutan  gaataacaggtaa
B D                    Gibbon  gaataacagctaa
B D                    Rhesus  gaataacagctaa
B D       Crab-eating macaque  gaataacagctaa
B D                    Baboon  g---aacagctaa
B D              Green monkey  gaataacagctaa
B D                  Marmoset  gaataacagctaa
B D           Squirrel monkey  gaataacagctaa
B D                  Bushbaby  --ataacagctac
           Chinese tree shrew  ---taacagctaa
B D                  Squirrel  gaataataactaa
                 Prairie vole  aaac--------a
B D           Chinese hamster  aaacagcagctaa
               Golden hamster  aaacaacagctaa
B D                     Mouse  aaataacacctaa
B D                       Rat  aaataacacctaa
B D                    Rabbit  tatttaca--tag
B D                       Pig  --acaatagctaa
B D                    Alpaca  --acaacagctaa
               Bactrian camel  --acaacagctaa
B D                   Dolphin  --acaacggctaa
                 Killer whale  --acaacggctaa
             Tibetan antelope  --acaacagttaa
B D                       Cow  --acaacagttaa
B D                     Sheep  --acaacagttaa
                Domestic goat  --acaacagttaa
B D          White rhinoceros  --acaacagctaa
B D                       Cat  --acaacagctaa
B D                       Dog  --agagcagctaa
B D                   Ferret   --acaacagctag
B D                     Panda  --ccaacagctaa
               Pacific walrus  --acaacagctaa
                 Weddell seal  --acaacagctaa
             Black flying-fox  --gtagcagctaa
B D                   Megabat  --gtagcagctaa
                Big brown bat  --ataacagataa
B D                  Microbat  --gtaacagctaa
              Star-nosed mole  --ttaacaggtaa
B D                  Elephant  gagtaaaagctaa
B D                   Manatee  gaatagcagctaa
             Cape golden mole  ----aataagtta
B D                    Tenrec  cagcaaccggtaa
                     Aardvark  gaataacagctaa
B D                 Armadillo  ------gagctaa
B D                     Shrew  =============
B D                      Pika  =============
B D                  Hedgehog  =============
         Cape elephant shrew  =============
      Lesser Egyptian jerboa  =============
        David's myotis (bat)  =============
B D                    Lizard  =============
      Yellowbelly pufferfish  =============
B D                      Fugu  =============
B D                     Horse  =============
          Tibetan ground jay  =============
B D               Zebra finch  =============
  D    White-throated sparrow  =============
B D       Medium ground finch  =============
B D        American alligator  =============
B D                    Turkey  =============
B D                   Chicken  =============
  D          Peregrine falcon  =============
  D              Saker falcon  =============
  D               Rock pigeon  =============
B D                Budgerigar  =============
B D                  Platypus  =============
  D       Collared flycatcher  =============
  D  Chinese softshell turtle  =============
  D            Painted turtle  =============
B D                   Opossum  =============
B D           Tasmanian devil  =============
B D                Coelacanth  =============
  D           Green seaturtle  =============
            Brush-tailed rat  =============
                  Chinchilla  =============
B D             X. tropicalis  =============
B D                Guinea pig  =============
B D            Naked mole-rat  -------------

Inserts between block 9 and 10 in window
B D                 Elephant 234bp
            Cape golden mole 1bp
B D                   Tenrec 212bp
B D                Armadillo 1bp

Alignment block 10 of 784 in window, 117424882 - 117424890, 9 bps 
B D                     Human  tgtttacat
B D                     Chimp  tgtttacat
B D                   Gorilla  tgtttatat
B D                 Orangutan  tgtttacat
B D                    Gibbon  tgtttacat
B D                    Rhesus  tgtttacat
B D       Crab-eating macaque  tgtttacat
B D                    Baboon  tgtttacat
B D              Green monkey  tgtttacat
B D                  Marmoset  tgtttacat
B D           Squirrel monkey  tgtttacac
B D                  Bushbaby  cattcacat
           Chinese tree shrew  catttacat
B D                  Squirrel  catttatat
                 Prairie vole  gatttatat
B D           Chinese hamster  gatttacat
               Golden hamster  gatttagat
B D                     Mouse  gacttacat
B D                       Rat  gacttacat
B D                    Rabbit  tatttttat
B D                       Pig  tatttatat
B D                    Alpaca  tatttatat
               Bactrian camel  tatttatat
B D                   Dolphin  tatttatat
                 Killer whale  tatttatat
             Tibetan antelope  tatttatat
B D                       Cow  tatttatat
B D                     Sheep  tatttatat
                Domestic goat  tatttatat
B D          White rhinoceros  tacttacac
B D                       Cat  tatttatgt
B D                       Dog  tatttactt
B D                   Ferret   tatttacat
B D                     Panda  tatttgcat
               Pacific walrus  tatttata-
                 Weddell seal  tatttatat
             Black flying-fox  tatttacaa
B D                   Megabat  tatttacaa
                Big brown bat  tatttacat
B D                  Microbat  tatttacct
              Star-nosed mole  aatctgcaa
B D                   Manatee  taaggaaac
             Cape golden mole  caaggaaac
                     Aardvark  gaatgaaac
B D                 Armadillo  --tttactt
B D                     Shrew  =========
B D                      Pika  =========
B D                  Hedgehog  =========
B D                    Tenrec  =========
         Cape elephant shrew  =========
      Lesser Egyptian jerboa  =========
        David's myotis (bat)  =========
B D                    Lizard  =========
      Yellowbelly pufferfish  =========
B D                      Fugu  =========
B D                     Horse  =========
B D                  Elephant  =========
          Tibetan ground jay  =========
B D               Zebra finch  =========
  D    White-throated sparrow  =========
B D       Medium ground finch  =========
B D        American alligator  =========
B D                    Turkey  =========
B D                   Chicken  =========
  D          Peregrine falcon  =========
  D              Saker falcon  =========
  D               Rock pigeon  =========
B D                Budgerigar  =========
B D                  Platypus  =========
  D       Collared flycatcher  =========
  D  Chinese softshell turtle  =========
  D            Painted turtle  =========
B D                   Opossum  =========
B D           Tasmanian devil  =========
B D                Coelacanth  =========
  D           Green seaturtle  =========
            Brush-tailed rat  =========
                  Chinchilla  =========
B D             X. tropicalis  =========
B D                Guinea pig  =========
B D            Naked mole-rat  ---------

Inserts between block 10 and 11 in window
B D                 Bushbaby 1bp
B D                   Rabbit 201bp

Alignment block 11 of 784 in window, 117424891 - 117424898, 8 bps 
B D                     Human  aattccta
B D                     Chimp  aattccta
B D                   Gorilla  aattccta
B D                 Orangutan  aattccta
B D                    Gibbon  aattccta
B D                    Rhesus  aattccta
B D       Crab-eating macaque  aattccta
B D                    Baboon  aattccta
B D              Green monkey  aattccta
B D                  Marmoset  aattccta
B D           Squirrel monkey  aattccta
B D                  Bushbaby  aatgccta
           Chinese tree shrew  aatgcctg
B D                  Squirrel  attgttta
                 Prairie vole  attgttta
B D           Chinese hamster  attgttta
               Golden hamster  actgttta
B D                     Mouse  attgctta
B D                       Rat  attgttta
B D                       Pig  aatacctg
B D                    Alpaca  aatgccta
               Bactrian camel  aatgccta
B D                   Dolphin  aatgccta
                 Killer whale  aatgccta
             Tibetan antelope  agtgccta
B D                       Cow  aatgccta
B D                     Sheep  agtgccta
                Domestic goat  agtgcccg
B D          White rhinoceros  aatgctta
B D                       Cat  attgtatg
B D                       Dog  aacgtctg
B D                   Ferret   aatgtctg
B D                     Panda  agcgacta
               Pacific walrus  aatgtctg
                 Weddell seal  aatgtctg
             Black flying-fox  aatgccta
B D                   Megabat  aatgccta
                Big brown bat  gatgccta
B D                  Microbat  aatgccta
              Star-nosed mole  aatgccta
B D                   Manatee  aatcctta
             Cape golden mole  aattctta
                     Aardvark  aattctta
B D                 Armadillo  aatgccta
B D                    Rabbit  ========
B D                     Shrew  ========
B D                      Pika  ========
B D                  Hedgehog  ========
B D                    Tenrec  ========
         Cape elephant shrew  ========
      Lesser Egyptian jerboa  ========
        David's myotis (bat)  ========
B D                    Lizard  ========
      Yellowbelly pufferfish  ========
B D                      Fugu  ========
B D                     Horse  ========
B D                  Elephant  ========
          Tibetan ground jay  ========
B D               Zebra finch  ========
  D    White-throated sparrow  ========
B D       Medium ground finch  ========
B D        American alligator  ========
B D                    Turkey  ========
B D                   Chicken  ========
  D          Peregrine falcon  ========
  D              Saker falcon  ========
  D               Rock pigeon  ========
B D                Budgerigar  ========
B D                  Platypus  ========
  D       Collared flycatcher  ========
  D  Chinese softshell turtle  ========
  D            Painted turtle  ========
B D                   Opossum  ========
B D           Tasmanian devil  ========
B D                Coelacanth  ========
  D           Green seaturtle  ========
            Brush-tailed rat  ========
                  Chinchilla  ========
B D             X. tropicalis  ========
B D                Guinea pig  ========
B D            Naked mole-rat  --------

Inserts between block 11 and 12 in window
B D                  Manatee 208bp
            Cape golden mole 426bp
                    Aardvark 206bp

Alignment block 12 of 784 in window, 117424899 - 117424915, 17 bps 
B D                     Human  tgtgttc--------------------------------taagt----cctt-t
B D                     Chimp  tgtgttc--------------------------------taagt----cctt-t
B D                   Gorilla  tgtgttc--------------------------------taagt----cctt-t
B D                 Orangutan  catgttc--------------------------------taagt----cttt-t
B D                    Gibbon  tgtgttc--------------------------------taagt----cctt-t
B D                    Rhesus  tgtgttc--------------------------------taagt----cctt-t
B D       Crab-eating macaque  tgtgttc--------------------------------taagt----gctt-t
B D                    Baboon  tgtgttc--------------------------------taagt----cctt-t
B D              Green monkey  tgtgttc--------------------------------taagt----cctt-t
B D                  Marmoset  tgcgctt--------------------------------gaagt----cctt-t
B D           Squirrel monkey  tgtgttc--------------------------------gaagt----cctt-t
B D                  Bushbaby  tatgttc--------------------------------caagt----cctt-t
           Chinese tree shrew  tatgttc--------------------------------taggt----cttt-t
B D                  Squirrel  tatgttc--------------------------------tatgt----ccttaa
                 Prairie vole  taactcttaagctaacagtaacatgaaagctatgtattctaatc----tgct-a
B D           Chinese hamster  tgtctct--------------------------------taagc----taat-a
               Golden hamster  tgtctct--------------------------------taagc----taat-a
B D                     Mouse  cacatct--------------------------------taacc----taat-a
B D                       Rat  tatatct--------------------------------taagc----taat-a
B D                       Pig  tatgttc--------------------------------taaga----gcta-t
B D                    Alpaca  catgccc--------------------------------taagg----cctt-t
               Bactrian camel  tatgccc--------------------------------taagg----cctt-t
B D                   Dolphin  tatgttc--------------------------------taaga----cccg-t
                 Killer whale  tatgttc--------------------------------taaga----cccg-t
             Tibetan antelope  tatgttc--------------------------------taaga----cttg-t
B D                       Cow  tatgttc--------------------------------taaga----cttg-a
B D                     Sheep  tatgttc--------------------------------taaga----cttg-t
                Domestic goat  tatgttc--------------------------------taaga----cttg-t
B D          White rhinoceros  tatgttc--------------------------------taagacctttatt-t
B D                       Cat  tatgttc--------------------------------taagatctttatt-t
B D                       Dog  tatgt---------------------------------------------tt-t
B D                   Ferret   tatgttt--------------------------------taga-----tctt-t
B D                     Panda  tatgttt--------------------------------taga-----tctt-t
               Pacific walrus  tatgttt--------------------------------taga-----tgtt-t
                 Weddell seal  tatgttt--------------------------------taga-----tctt-t
             Black flying-fox  cacgttc--------------------------------gaagacctttatt-a
B D                   Megabat  cacgttc--------------------------------gaagacctttatt-a
                Big brown bat  t-tgttc--------------------------------taagaactttact-a
B D                  Microbat  t-tgttc--------------------------------taataactttatt-a
              Star-nosed mole  tcaatta--------------------------------taaga----cttt-c
B D                 Armadillo  taaattt--------------------------------tgaac----cctt-t
B D                    Rabbit  ======================================================
B D                     Shrew  ======================================================
B D                      Pika  ======================================================
B D                  Hedgehog  ======================================================
B D                    Tenrec  ======================================================
         Cape elephant shrew  ======================================================
      Lesser Egyptian jerboa  ======================================================
        David's myotis (bat)  ======================================================
B D                    Lizard  ======================================================
      Yellowbelly pufferfish  ======================================================
B D                      Fugu  ======================================================
B D                     Horse  ======================================================
B D                   Manatee  ======================================================
B D                  Elephant  ======================================================
          Tibetan ground jay  ======================================================
B D               Zebra finch  ======================================================
  D    White-throated sparrow  ======================================================
B D       Medium ground finch  ======================================================
B D        American alligator  ======================================================
B D                    Turkey  ======================================================
B D                   Chicken  ======================================================
  D          Peregrine falcon  ======================================================
  D              Saker falcon  ======================================================
  D               Rock pigeon  ======================================================
B D                Budgerigar  ======================================================
B D                  Platypus  ======================================================
  D       Collared flycatcher  ======================================================
            Cape golden mole  ======================================================
  D  Chinese softshell turtle  ======================================================
  D            Painted turtle  ======================================================
                    Aardvark  ======================================================
B D                   Opossum  ======================================================
B D           Tasmanian devil  ======================================================
B D                Coelacanth  ======================================================
  D           Green seaturtle  ======================================================
            Brush-tailed rat  ======================================================
                  Chinchilla  ======================================================
B D             X. tropicalis  ======================================================
B D                Guinea pig  ======================================================
B D            Naked mole-rat  ------------------------------------------------------

Inserts between block 12 and 13 in window
B D          Squirrel monkey 303bp
          Chinese tree shrew 13bp
B D                 Squirrel 7bp
                Prairie vole 17bp
B D          Chinese hamster 7bp
              Golden hamster 7bp
B D                    Mouse 7bp
B D                      Rat 7bp

Alignment block 13 of 784 in window, 117424916 - 117424925, 10 bps 
B D                     Human  aaaagcgtat---
B D                     Chimp  aaaagcgtat---
B D                   Gorilla  aaaagcatat---
B D                 Orangutan  aaaagtgtat---
B D                    Gibbon  aaaagtgtat---
B D                    Rhesus  aaaagtgtat---
B D       Crab-eating macaque  aaaagtgtat---
B D                    Baboon  aaaactgtat---
B D              Green monkey  aaaagtgtat---
B D                  Marmoset  aaaagcgtat---
B D           Squirrel monkey  aaaagtgtat---
B D                  Bushbaby  atttatgtat---
           Chinese tree shrew  agtctctcat---
B D                  Squirrel  gttatcttat---
B D           Chinese hamster  aaaactatat---
               Golden hamster  aaaaccatat---
B D                     Mouse  -aaaccttat---
B D                       Rat  -aaactttat---
B D                       Pig  ----atgtat---
B D                    Alpaca  ----atgtat---
               Bactrian camel  ----atgtat---
B D                   Dolphin  ----atatag---
                 Killer whale  ----atacag---
             Tibetan antelope  ----atatat---
B D                       Cow  ----atatat---
B D                     Sheep  ----atatat---
                Domestic goat  ----atatat---
B D          White rhinoceros  ----atatat---
B D                       Cat  ----atgcat---
B D                       Dog  ----atgtat---
B D                   Ferret   ----atgtat---
B D                     Panda  ----atgtgt---
               Pacific walrus  ----atgtat---
                 Weddell seal  ----atgtat---
             Black flying-fox  ----atgtat---
B D                   Megabat  ----atgtat---
                Big brown bat  ----atgtat---
B D                  Microbat  ----atatat---
              Star-nosed mole  ----ttgtgc---
B D                 Armadillo  ---attatatcat
B D                    Rabbit  =============
B D                     Shrew  =============
B D                      Pika  =============
B D                  Hedgehog  =============
B D                    Tenrec  =============
         Cape elephant shrew  =============
                Prairie vole  =============
      Lesser Egyptian jerboa  =============
        David's myotis (bat)  =============
B D                    Lizard  =============
      Yellowbelly pufferfish  =============
B D                      Fugu  =============
B D                     Horse  =============
B D                   Manatee  =============
B D                  Elephant  =============
          Tibetan ground jay  =============
B D               Zebra finch  =============
  D    White-throated sparrow  =============
B D       Medium ground finch  =============
B D        American alligator  =============
B D                    Turkey  =============
B D                   Chicken  =============
  D          Peregrine falcon  =============
  D              Saker falcon  =============
  D               Rock pigeon  =============
B D                Budgerigar  =============
B D                  Platypus  =============
  D       Collared flycatcher  =============
            Cape golden mole  =============
  D  Chinese softshell turtle  =============
  D            Painted turtle  =============
                    Aardvark  =============
B D                   Opossum  =============
B D           Tasmanian devil  =============
B D                Coelacanth  =============
  D           Green seaturtle  =============
            Brush-tailed rat  =============
                  Chinchilla  =============
B D             X. tropicalis  =============
B D                Guinea pig  =============
B D            Naked mole-rat  -------------

Inserts between block 13 and 14 in window
B D          Chinese hamster 200bp
              Golden hamster 31bp
B D                    Mouse 34bp
B D                      Rat 30bp
B D                      Pig 8bp
B D                   Alpaca 8bp
              Bactrian camel 8bp
B D                  Dolphin 8bp
                Killer whale 8bp
            Tibetan antelope 8bp
B D                      Cow 8bp
B D                    Sheep 8bp
               Domestic goat 8bp
B D         White rhinoceros 8bp
B D                      Cat 8bp
B D                      Dog 8bp
B D                  Ferret  8bp
B D                    Panda 8bp
              Pacific walrus 8bp
                Weddell seal 8bp
            Black flying-fox 8bp
B D                  Megabat 8bp
               Big brown bat 8bp
B D                 Microbat 8bp
             Star-nosed mole 8bp

Alignment block 14 of 784 in window, 117424926 - 117424964, 39 bps 
B D                     Human  tttaa---ttct-ccccc---------------------ttgccaacaac-cctttgata-taata
B D                     Chimp  tttaa---ttct-ccccc---------------------ttgccaacaac-cctttgata-taata
B D                   Gorilla  tttaa---ttct-ccccc---------------------ttgccaacaa--cctttgata-taata
B D                 Orangutan  tttaa---ttct-ccccc---------------------ttgccaacaac-cctttgata-taata
B D                    Gibbon  tttaa---ttct-cctcc---------------------ttgccaacaac-cctttgata-taata
B D                    Rhesus  tttaa---tttt-ccccc---------------------ttgccaacaac-actttgata-taata
B D       Crab-eating macaque  tttaa---tttt-ccccg---------------------ttgccaacaac-actttgata-taata
B D                    Baboon  tttaa---tttt-ccccc---------------------ttgccaacaac-actttgata-taata
B D              Green monkey  tttaa---tttt-ccccc---------------------ttgccaacaac-cctttgata-taata
B D                  Marmoset  tttaa---ttct-ccccc---------------------ttgccaacaac-cttttgata--cata
B D           Squirrel monkey  tttaa---ttct-ccccc---------------------ttgccaacaac-ctcttaataacaata
B D                  Bushbaby  tttaa---tgtc-c----------------------------ccaaccac-cctctgata-taata
           Chinese tree shrew  tttag---tttt-ctcct---------------------ttcccaacaat-cctttgata-taata
B D                  Squirrel  tttaa---ttat-ctttc---------------------c--ccaacaac-c--------------
                 Prairie vole  tttat---tt--------------------------------ccaataac-c-ttgggta-gaatg
               Golden hamster  tttaa---tt--------------------------------ccaataac-c-ttgggta-tattt
B D                     Mouse  tttaa---tt--------------------------------tcaatatc-c-ttgaata-caatg
B D                       Rat  tttag---tt--------------------------------tcaacaac-c-ttgagta-tagtg
B D                       Pig  tttaa---taac-ccctcctccgcaaaaaacaaacaaacaaaaaaaaaacacctttgatt-taatg
B D                    Alpaca  ttt--------------------------------------------aac-cctttgata-taatg
               Bactrian camel  ttt--------------------------------------------aac-cctttgata-taatg
B D                   Dolphin  tttaa---tccc-ccccccc-------------------aaa--aaaaac-cctttgata-caatg
                 Killer whale  tttaa---tccc-ccccccc-------------------caa--aaaaac-cctttgata-caatg
             Tibetan antelope  tttaa---tctc-ccctccccccc-------------cccaaataaaaac-cctttgatc-caatg
B D                       Cow  tttaa---tctc-tcctcccccc----------------aaaataaaaac-cctttgatc-caatg
B D                     Sheep  tttaa---tctc-ccctccccccc-------------aaaaaataaaaac-cctttgatc-caatg
                Domestic goat  tttaa---tctc-ccctccccccc---------------aaaataaaaac-cctttgatt-caatg
B D          White rhinoceros  tttaa---tccc-ccccc---------------------aaaacaaaaac-cctttgata-taatg
B D                       Cat  tttaa---tacccccccc----------------------------aaac-cctttcata-ttatg
B D                       Dog  tctaa---taca-cccca----------------------------aaac-ccttcgata-taatg
B D                   Ferret   tttaa---tacacccccc----------------------------aaac-cttttgata-ttatg
B D                     Panda  tttaa---tata-ccccc----------------------------aaac-cctttgata-ttatg
               Pacific walrus  tttaa---taca-ccccc----------------------------aaac-cctctgata-ttatg
                 Weddell seal  tttaa---taca-cccct----------------------------aaac-cctctgata-ttatg
             Black flying-fox  tttaatttttcc-tctcca--------------------aaaaaaaaatc-cctttgata-taatg
B D                   Megabat  tttaatttttcc-tctcc---------------------aaaaaaaaatc-cctttgata-taatg
                Big brown bat  tttaa-cctccc-ccccc----------------------aaaaaaaata-tctttgata-caatg
B D                  Microbat  tttaa-cctccc-tccct------------------------caaaaata-cctttgata-caatg
              Star-nosed mole  tttaa---ctcc-ctcttcccc-------------------------agt-cctttgata-tggca
B D                 Armadillo  tttaa---cacc-ccccc------------------------ccaacaac-actttcata-caatg
B D                    Rabbit  ==================================================================
B D                     Shrew  ==================================================================
B D                      Pika  ==================================================================
B D                  Hedgehog  ==================================================================
B D                    Tenrec  ==================================================================
         Cape elephant shrew  ==================================================================
B D           Chinese hamster  ==================================================================
      Lesser Egyptian jerboa  ==================================================================
        David's myotis (bat)  ==================================================================
B D                    Lizard  ==================================================================
      Yellowbelly pufferfish  ==================================================================
B D                      Fugu  ==================================================================
B D                     Horse  ==================================================================
B D                   Manatee  ==================================================================
B D                  Elephant  ==================================================================
          Tibetan ground jay  ==================================================================
B D               Zebra finch  ==================================================================
  D    White-throated sparrow  ==================================================================
B D       Medium ground finch  ==================================================================
B D        American alligator  ==================================================================
B D                    Turkey  ==================================================================
B D                   Chicken  ==================================================================
  D          Peregrine falcon  ==================================================================
  D              Saker falcon  ==================================================================
  D               Rock pigeon  ==================================================================
B D                Budgerigar  ==================================================================
B D                  Platypus  ==================================================================
  D       Collared flycatcher  ==================================================================
            Cape golden mole  ==================================================================
  D  Chinese softshell turtle  ==================================================================
  D            Painted turtle  ==================================================================
                    Aardvark  ==================================================================
B D                   Opossum  ==================================================================
B D           Tasmanian devil  ==================================================================
B D                Coelacanth  ==================================================================
  D           Green seaturtle  ==================================================================
            Brush-tailed rat  ==================================================================
                  Chinchilla  ==================================================================
B D             X. tropicalis  ==================================================================
B D                Guinea pig  ==================================================================
B D            Naked mole-rat  ------------------------------------------------------------------

Inserts between block 14 and 15 in window
B D                 Bushbaby 1bp
          Chinese tree shrew 1bp
B D                      Pig 1bp
B D                   Alpaca 1bp
              Bactrian camel 1bp
B D                  Dolphin 1bp
                Killer whale 1bp
            Tibetan antelope 1bp
B D                      Cow 1bp
B D                    Sheep 1bp
               Domestic goat 1bp
B D         White rhinoceros 1bp
B D                      Cat 1bp
B D                      Dog 1bp
B D                  Ferret  1bp
B D                    Panda 1bp
              Pacific walrus 1bp
                Weddell seal 1bp
            Black flying-fox 1bp
B D                  Megabat 1bp
               Big brown bat 1bp
B D                 Microbat 1bp
B D                Armadillo 1bp

Alignment block 15 of 784 in window, 117424965 - 117424980, 16 bps 
B D                     Human  atc-------------------------------------------------------------------
B D                     Chimp  atc-------------------------------------------------------------------
B D                   Gorilla  atc-------------------------------------------------------------------
B D                 Orangutan  atc-------------------------------------------------------------------
B D                    Gibbon  atc-------------------------------------------------------------------
B D                    Rhesus  atc-------------------------------------------------------------------
B D       Crab-eating macaque  atc-------------------------------------------------------------------
B D                    Baboon  atc-------------------------------------------------------------------
B D              Green monkey  atc-------------------------------------------------------------------
B D                  Marmoset  atc-------------------------------------------------------------------
B D           Squirrel monkey  atc-------------------------------------------------------------------
B D                  Bushbaby  atc-------------------------------------------------------------------
           Chinese tree shrew  att-------------------------------------------------------------------
B D                  Squirrel  ----------------------------------------------------------------------
                 Prairie vole  tcg-------------------------------------------------------------------
               Golden hamster  ctt-------------------------------------------------------------------
B D                     Mouse  ctg-------------------------------------------------------------------
B D                       Rat  ctg-------------------------------------------------------------------
B D                       Pig  atccccccccttttttttttcttttttggtcgtacctgcagcatgtggaaattcctgggccagggattaa
B D                    Alpaca  atc-------------------------------------------------------------------
               Bactrian camel  atc-------------------------------------------------------------------
B D                   Dolphin  atc-------------------------------------------------------------------
                 Killer whale  atc-------------------------------------------------------------------
             Tibetan antelope  atc-------------------------------------------------------------------
B D                       Cow  atc-------------------------------------------------------------------
B D                     Sheep  atc-------------------------------------------------------------------
                Domestic goat  atc-------------------------------------------------------------------
B D                     Horse  atc-------------------------------------------------------------------
B D          White rhinoceros  ctc-------------------------------------------------------------------
B D                       Cat  agc-------------------------------------------------------------------
B D                       Dog  atc-------------------------------------------------------------------
B D                   Ferret   atc-------------------------------------------------------------------
B D                     Panda  atc-------------------------------------------------------------------
               Pacific walrus  atc-------------------------------------------------------------------
                 Weddell seal  atc-------------------------------------------------------------------
             Black flying-fox  atg-------------------------------------------------------------------
B D                   Megabat  atg-------------------------------------------------------------------
                Big brown bat  agc-------------------------------------------------------------------
B D                  Microbat  atc-------------------------------------------------------------------
              Star-nosed mole  ----------------------------------------------------------------------
B D                 Armadillo  atc-------------------------------------------------------------------
B D                    Rabbit  ======================================================================
B D                     Shrew  ======================================================================
B D                      Pika  ======================================================================
B D                  Hedgehog  ======================================================================
B D                    Tenrec  ======================================================================
         Cape elephant shrew  ======================================================================
B D           Chinese hamster  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
        David's myotis (bat)  ======================================================================
B D                    Lizard  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                   Manatee  ======================================================================
B D                  Elephant  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
  D    White-throated sparrow  ======================================================================
B D       Medium ground finch  ======================================================================
B D        American alligator  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D                Budgerigar  ======================================================================
B D                  Platypus  ======================================================================
  D       Collared flycatcher  ======================================================================
            Cape golden mole  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
                    Aardvark  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                Coelacanth  ======================================================================
  D           Green seaturtle  ======================================================================
            Brush-tailed rat  ======================================================================
                  Chinchilla  ======================================================================
B D             X. tropicalis  ======================================================================
B D                Guinea pig  ======================================================================
B D            Naked mole-rat  ----------------------------------------------------------------------

                        Human  ------------------------------------------------------------------c--t
                        Chimp  ------------------------------------------------------------------c--t
                      Gorilla  ------------------------------------------------------------------c--t
                    Orangutan  ------------------------------------------------------------------c--t
                       Gibbon  ------------------------------------------------------------------c--t
                       Rhesus  ------------------------------------------------------------------c--t
          Crab-eating macaque  ------------------------------------------------------------------c--t
                       Baboon  ------------------------------------------------------------------c--t
                 Green monkey  ------------------------------------------------------------------c--t
                     Marmoset  ------------------------------------------------------------------c--t
              Squirrel monkey  ------------------------------------------------------------------c--t
                     Bushbaby  ------------------------------------------------------------------c--t
           Chinese tree shrew  ------------------------------------------------------------------c--t
                     Squirrel  ----------------------------------------------------------------------
                 Prairie vole  ------------------------------------------------------------------agat
               Golden hamster  ------------------------------------------------------------------cggt
                        Mouse  ------------------------------------------------------------------ctat
                          Rat  ------------------------------------------------------------------ctat
                          Pig  acctgcatcaccagagacaacactgatccttaacccactgtgccactgcaggaactccactgcactc--c
                       Alpaca  ------------------------------------------------------------------c--t
               Bactrian camel  ------------------------------------------------------------------c--t
                      Dolphin  ------------------------------------------------------------------c--c
                 Killer whale  ------------------------------------------------------------------c--c
             Tibetan antelope  ------------------------------------------------------------------t--t
                          Cow  ------------------------------------------------------------------t--t
                        Sheep  ------------------------------------------------------------------t--t
                Domestic goat  ------------------------------------------------------------------t--t
                        Horse  ------------------------------------------------------------------c--c
             White rhinoceros  ------------------------------------------------------------------c--c
                          Cat  ------------------------------------------------------------------t--c
                          Dog  ------------------------------------------------------------------c--c
                      Ferret   ------------------------------------------------------------------c--c
                        Panda  ------------------------------------------------------------------c--c
               Pacific walrus  ------------------------------------------------------------------c--c
                 Weddell seal  ------------------------------------------------------------------c--c
             Black flying-fox  ------------------------------------------------------------------t--t
                      Megabat  ------------------------------------------------------------------t--t
                Big brown bat  ------------------------------------------------------------------c--c
                     Microbat  ------------------------------------------------------------------c--c
              Star-nosed mole  ----------------------------------------------------------------cat--c
                    Armadillo  ------------------------------------------------------------------t--c
                       Rabbit  ======================================================================
                        Shrew  ======================================================================
                         Pika  ======================================================================
                     Hedgehog  ======================================================================
                       Tenrec  ======================================================================
          Cape elephant shrew  ======================================================================
              Chinese hamster  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
         David's myotis (bat)  ======================================================================
                       Lizard  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
          Medium ground finch  ======================================================================
           American alligator  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Collared flycatcher  ======================================================================
             Cape golden mole  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
                     Aardvark  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================
                   Coelacanth  ======================================================================
              Green seaturtle  ======================================================================
             Brush-tailed rat  ======================================================================
                   Chinchilla  ======================================================================
                X. tropicalis  ======================================================================
                   Guinea pig  ======================================================================
               Naked mole-rat  ----------------------------------------------------------------------

                        Human  catttt--aaaa-c
                        Chimp  catttt--aaaa-c
                      Gorilla  catttt--aaaa-c
                    Orangutan  catttt--aaaa-c
                       Gibbon  catttt--aaaa-c
                       Rhesus  catttt--aaaa-c
          Crab-eating macaque  catttt--aaaa-c
                       Baboon  catttt--aaaa-c
                 Green monkey  catttt--aaaa-c
                     Marmoset  cacttt--aaaa-t
              Squirrel monkey  cacttt--aaaa-t
                     Bushbaby  catttt--aaaa--
           Chinese tree shrew  catttt--aaga-g
                     Squirrel  ccttttttataa--
                 Prairie vole  cctttt--aaaaa-
               Golden hamster  cctttt--aaaaa-
                        Mouse  cctttttaaaaa--
                          Rat  cctttt--aaaa--
                          Pig  agtttt--aaaa-a
                       Alpaca  ggtttt--aaaa-a
               Bactrian camel  ggtttt--aaaa-a
                      Dolphin  ggtttt--taaa-a
                 Killer whale  ggtttt--taaa-a
             Tibetan antelope  gctttt--gaaa-a
                          Cow  gctttt--gaaa-a
                        Sheep  gctttt--gaaa-a
                Domestic goat  gctttt--gaaa-a
                        Horse  catttt--aaaa-a
             White rhinoceros  cgtttt--aaaa-a
                          Cat  catttt--aaaa-a
                          Dog  caattt--aaaa-a
                      Ferret   tatttt--aaaa-a
                        Panda  catttt--aaaa-a
               Pacific walrus  catttt--taaa-a
                 Weddell seal  catttt--taaa-a
             Black flying-fox  gattta--aaga-g
                      Megabat  gattta--aaga-g
                Big brown bat  a--ttg--aa----
                     Microbat  a--ttg--aaaa-g
              Star-nosed mole  cagttt--aaaa-a
                    Armadillo  tatttt--taaa-a
                       Rabbit  ==============
                        Shrew  ==============
                         Pika  ==============
                     Hedgehog  ==============
                       Tenrec  ==============
          Cape elephant shrew  ==============
              Chinese hamster  ==============
       Lesser Egyptian jerboa  ==============
         David's myotis (bat)  ==============
                       Lizard  ==============
       Yellowbelly pufferfish  ==============
                         Fugu  ==============
                      Manatee  ==============
                     Elephant  ==============
           Tibetan ground jay  ==============
                  Zebra finch  ==============
       White-throated sparrow  ==============
          Medium ground finch  ==============
           American alligator  ==============
                       Turkey  ==============
                      Chicken  ==============
             Peregrine falcon  ==============
                 Saker falcon  ==============
                  Rock pigeon  ==============
                   Budgerigar  ==============
                     Platypus  ==============
          Collared flycatcher  ==============
             Cape golden mole  ==============
     Chinese softshell turtle  ==============
               Painted turtle  ==============
                     Aardvark  ==============
                      Opossum  ==============
              Tasmanian devil  ==============
                   Coelacanth  ==============
              Green seaturtle  ==============
             Brush-tailed rat  ==============
                   Chinchilla  ==============
                X. tropicalis  ==============
                   Guinea pig  ==============
               Naked mole-rat  --------------

Inserts between block 15 and 16 in window
                Prairie vole 1bp

Alignment block 16 of 784 in window, 117424981 - 117425179, 199 bps 
B D                     Human  gggc-------agaa-----------attgaagc-------tta--------------ggaagatttggt
B D                     Chimp  gggc-------agaa-----------attgaagc-------tta--------------ggaagatttggt
B D                   Gorilla  gggc-------agaa-----------attgaagc-------tta--------------ggaagatttggt
B D                 Orangutan  gggc-------ggaa-----------attgaagc-------tta--------------ggaagatttgat
B D                    Gibbon  ggga-------agaa-----------attgaagc-------tta--------------gaaagatttggt
B D                    Rhesus  ggac-------agaa-----------attgaaac-------tta--------------ggaagatttggt
B D       Crab-eating macaque  ggac-------agaa-----------attgaaac-------tta--------------ggaagatttggt
B D                    Baboon  ggac-------agaa-----------attgaaac-------tta--------------ggaagatttggt
B D              Green monkey  ggac-------agaa-----------attgaaac-------tta--------------ggaagatttggt
B D                  Marmoset  gggt-------agaa-----------aattaagc-------tta--------------gaaagatttggt
B D           Squirrel monkey  tggt-------agaa-----------aattaagc-------tta--------------ggaagatttggt
B D                  Bushbaby  -gga-------ataa-----------attaaagc-------tta--------------gaaaggttaggt
           Chinese tree shrew  gg-----------aa-----------ataaaagc-------tca--------------gaaagact----
B D                  Squirrel  ----------------------------------------------------------------------
                 Prairie vole  --gg-------ggaa-----------actggagc-------ttt--------------caaaactctgac
B D           Chinese hamster  ggga-------ttaaagatgtgcaccaccaatgc-------tcagcctttgatccttttaaaagtttgac
               Golden hamster  -ggg-------ggaa-----------accgaagt-------tta--------------caaaagtttgac
B D                     Mouse  gggg-------gaaa-----------actgaaac-------cta--------------caaaagtttggt
B D                       Rat  aggg-------gaaa-----------actgaaacctttaagcta--------------ttaaactttaat
B D                       Pig  -ggg-------ggaa-----------attgaagc-------tta--------------gga-ggtttcct
B D                    Alpaca  -ggg-------gaaa-----------cttgaagc-------tta--------------cga--gtttcca
               Bactrian camel  -ggg-------gaaa-----------cttgaagc-------tta--------------cga--gtttcca
B D                   Dolphin  -ggg-------ggta-----------attgaagt-------tta--------------gga-agtttcct
                 Killer whale  -ggg-------ggta-----------attgaagt-------tta--------------gga-agtttcct
             Tibetan antelope  -tgg-------ggac-----------attgaagc-------tta--------------gaa-ggtttcct
B D                       Cow  -tgg-------ggac-----------actgaagc-------tta--------------gaa-gttttcct
B D                     Sheep  -tgg-------ggac-----------attgaagc-------tta--------------gaa-ggtttcct
                Domestic goat  -tgg-------ggac-----------attgaagc-------tta--------------gaa-ggtttcct
B D                     Horse  -ggg-------ggaa-----------actgacgc-------tta--------------ggaaggtttggt
B D          White rhinoceros  -gca-------ggaa-----------attgaagt-------tta--------------ggaaggtttggt
B D                       Cat  -ggg-------ggac-----------attaaagc-------tta--------------ggaaggtttgat
B D                       Dog  -ggg-------ggaa-----------attaaagc-------tt-----------------aaggtttggt
B D                   Ferret   -gga-------ggaa-----------attaaagt-------gta--------------ggaaggtttgtt
B D                     Panda  -ggg-------ggaa-----------attgaagt-------tta--------------ggaaggtttagt
               Pacific walrus  -ggg-------ggaa-----------attgatgc-------tta--------------ggaaggttaagt
                 Weddell seal  -ggg-------ggaa-----------actgaagc-------tta--------------ggagggttaagt
             Black flying-fox  -gagtgggggcgggg-----------attgaagc-------tct--------------ggaaggtttggt
B D                   Megabat  -gagtgggggcgggg-----------attgaagc-------tct--------------ggaaggtttggt
                Big brown bat  -ggggggcaggggga-----------attgaagc-------tta--------------ggaaggtttggt
B D                  Microbat  -gggggggggcggga-----------attgaagc-------taa--------------ggaaggtttggt
              Star-nosed mole  -gga-------agag-----------atggaaat-------tta--------------ggaag---cccg
B D                 Armadillo  -ggg-------gaaa-----------atggaagc-------tta--------------ggaaggttcgat
B D                    Rabbit  ======================================================================
B D                     Shrew  ======================================================================
B D                      Pika  ======================================================================
B D                  Hedgehog  ======================================================================
B D                    Tenrec  ======================================================================
         Cape elephant shrew  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
        David's myotis (bat)  ======================================================================
B D                    Lizard  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                   Manatee  ======================================================================
B D                  Elephant  ======================================================================
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
  D    White-throated sparrow  ======================================================================
B D       Medium ground finch  ======================================================================
B D        American alligator  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D                Budgerigar  ======================================================================
B D                  Platypus  ======================================================================
  D       Collared flycatcher  ======================================================================
            Cape golden mole  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
                    Aardvark  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                Coelacanth  ======================================================================
  D           Green seaturtle  ======================================================================
            Brush-tailed rat  ======================================================================
                  Chinchilla  ======================================================================
B D             X. tropicalis  ======================================================================
B D                Guinea pig  ======================================================================
B D            Naked mole-rat  ----------------------------------------------------------------------

                        Human  aactt-agtcaaggttacaaagccatcaagtggcatggtta--gtaatcaaacccagatctgtcttgttt
                        Chimp  aactt-agtcaaggttacaaagccatcaagtggcatggtta--gtaatcaaacccagatccgtcttgttt
                      Gorilla  aactt-agtcaaggttacaaagccatcaagtggcatggtta--gtaatcaaacccagatctgtcttgttt
                    Orangutan  aactt-agtcaaggttacaaagccatcaagtggcatggtta--gtaatcaaacccagatctgtcttgttt
                       Gibbon  aactt-agtcaaggttacaaagccatcaagtggcacggtta--gtaatcaaacccagatctgtcttgttt
                       Rhesus  aattt-agtaaaggttacaaagtcatcaagtggcacagtta--gtaatcaaacctagatctgtcttgttt
          Crab-eating macaque  aattt-agtaaaggttacaaagtcatcaagtggcacagtta--gtaatcaaacctagatctgtcttgttt
                       Baboon  aattt-agtcaaggttacaaagtcatcaagtggcacagtta--gtaatcaaacccagatctgtcttgttt
                 Green monkey  aactt-aatcaaggtcacaaagtcatcaagtggcacagtta--gtaatcaaacccagatctgtcttgttt
                     Marmoset  aactt-agtgaaggttacaaagccatcaagtggcatggtta--gcagtgaaacccagatctgtcttgttt
              Squirrel monkey  aactt-agtcaaggttacaaagccatcaagtggcatggtta--gcaatcaaacccagacctgtcttgttt
                     Bushbaby  aattt-agccaagattacagagtcctcaagtgcctcagtta--gtaaccaaaccaagatatg--ttgttt
           Chinese tree shrew  ---tt-agtcaagactatagagctaacatgtggcacagtta--gtaaccaaatcccaaactgtc--attt
                     Squirrel  ------------------------atgcattctcatggtta--gtaatcaaagatggatccgacttgttt
                 Prairie vole  agctg-atttaatattacagagccatcaagtgtcatggaca--gtaatcaacacatgat----cttgttt
              Chinese hamster  agc-----ttaatattatagagccgtcaagtgtcatggttgatgtaatcaaaacctcat----cttgttt
               Golden hamster  agc-----ttaatattac--agccatcacgtgtca------------------------------tgttt
                        Mouse  agctt-atttaatattaaagagccatcaaatatcatggtta--ttaatcaaaacctgat----cttgttt
                          Rat  agctt-atttaatattacagagccatcaaatgtcatggtta--ggaatcaaatcctgat----cctgttt
                          Pig  aaggt-ggtcaagattataaagccattaaatggtgggacta--gagatcacatccagaactgtaccgttt
                       Alpaca  aactt-ggtcaagatcacagagttatcaagtggtagggttg--gtaattaaacccagaaatgtactattt
               Bactrian camel  aactt-ggtcaagatcacagagttatcaagtggcagggttg--gtaattaaacccagaaatgtactattt
                      Dolphin  aaatt-ggtcaagattacagagccatcaagtggcagggcta--ataatcaaacccagaactgtactgttt
                 Killer whale  aaatt-ggtcaagattacagagccatcaagtggcagggcta--ataatcaaacccagaactgtactgttt
             Tibetan antelope  aactt-ggtcaggattacagagc---caagtggca-ggcta--gtaatcaaatccagaactgtactgttt
                          Cow  aactt-ggtcaggattacagagc---caagtagca-ggcta--gtaatcaaacccagaactgtactgttt
                        Sheep  aactt-ggtcaggattacagagc---caagtggca-ggcta--gtaatcaaatccagaactgtactgttt
                Domestic goat  aactt-ggtcaggattacagagc---caagtggca-ggcta--gtaatcaaatccagaactgtacggttt
                        Horse  aactt-ggtgatgatg--agagccatcaagtggcagggcta--gtaatcaaacccagaactgtactgttt
             White rhinoceros  aactt-ggacaagatt--agagccatcaagtagcagggcta--gtaatgaaacccagaagtgtcctgttt
                          Cat  aactt-gatcaagattacagagtcatcaaatggcagggcta--gtaatcaaacccagaaatgcactgttt
                          Dog  aattt-ggtcaagataatagaaccatcag-tggcagggtta--gtaatcaaacctggagctgtactgttt
                      Ferret   aacttgggtcaagattacagagccatcagatggcagggtta--gtaatcaaacccagaactgtactgtct
                        Panda  aactt-ggtcaagattacagagccatcaggtggcagggtta--gtaatcaaacccagaaatgtactgttt
               Pacific walrus  aactt-ggtcaggattacaaagccatcaggtggcagggtta--gtaatcaaacccagaactgtactgttt
                 Weddell seal  aactt-ggtcaagattacaaagccatcaggtggcagggtta--gtaatcaaacccagaactgtactgttt
             Black flying-fox  aaatt-ggtcaagattacagagccatcaagtgacagggcta--gtaatcaaacccagaactgtactgttt
                      Megabat  aaatt-ggtcaagattacagagccatcaagtgacagggcta--gcaatcaaacccagaactgtactgttt
                Big brown bat  aactt-ggtcaaaattacagagccatcca-tggcaggacta--gtactcaaacccagaactgtactgttt
                     Microbat  aactt-ggtcaaaattacagagccaccca-tggcagggcta--gtactcaaacccagaactgtactgtta
              Star-nosed mole  aattt-----aagattat--agccaccaagtggcacgatta--gtaatcaaagccagcactgtactgttt
                    Armadillo  aattt-agtcaagattacagagccattaaatggca--gcta--ggtttcaaatctagaacagttgtgttt
                       Rabbit  ======================================================================
                        Shrew  ======================================================================
                         Pika  ======================================================================
                     Hedgehog  ======================================================================
                       Tenrec  ======================================================================
          Cape elephant shrew  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
         David's myotis (bat)  ======================================================================
                       Lizard  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
          Medium ground finch  ======================================================================
           American alligator  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Collared flycatcher  ======================================================================
             Cape golden mole  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
                     Aardvark  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================
                   Coelacanth  ======================================================================
              Green seaturtle  ======================================================================
             Brush-tailed rat  ======================================================================
                   Chinchilla  ======================================================================
                X. tropicalis  ======================================================================
                   Guinea pig  ======================================================================
               Naked mole-rat  ----------------------------------------------------------------------

                        Human  tcaaaattattt--actttt--------------------------------------------------
                        Chimp  tcaaaattattt--actttt--------------------------------------------------
                      Gorilla  tcaaaattattt--actttt--------------------------------------------------
                    Orangutan  tcaaaattattt--actttt--------------------------------------------------
                       Gibbon  tcaaaattattt--actttt--------------------------------------------------
                       Rhesus  tcaaaattattt--actttt--------------------------------------------------
          Crab-eating macaque  tcaaaattattt--actttt--------------------------------------------------
                       Baboon  tcaaaattattt--actttt--------------------------------------------------
                 Green monkey  tcaaaattattt--actttt--------------------------------------------------
                     Marmoset  ccaaaattattt--actttt--------------------------------------------------
              Squirrel monkey  ccaaaattattt--actttt--------------------------------------------------
                     Bushbaby  ctaaaatggttt--acattc--------------------------------------------------
           Chinese tree shrew  ccaaaatgactc--acttta--------------------------------------------------
                     Squirrel  cc-aaaaggttttaatttc---------------------------------------------------
                 Prairie vole  cc-caataatgt--acttt---------------------------------------------------
              Chinese hamster  cc-caatgatgt--acttt---------------------------------------------------
               Golden hamster  cc-caatgatgt--acttt---------------------------------------------------
                        Mouse  tg-caatgatgt--atttt---------------------------------------------------
                          Rat  tg-cattgatgt--atttt---------------------------------------------------
                          Pig  ccaaaatgactt--atcttc--------------------------------------------------
                       Alpaca  ctaaaatgactg--actttc--------------------------------------------------
               Bactrian camel  ctaaaatgactg--actttc--------------------------------------------------
                      Dolphin  ccaaaatgattt--actttc--------------------------------------------------
                 Killer whale  ccaaaatgattt--actttc--------------------------------------------------
             Tibetan antelope  cccaaatgattc--actttc--------------------------------------------------
                          Cow  cccaaatgattc--actttc--------------------------------------------------
                        Sheep  cccaaatgattc--actttc--------------------------------------------------
                Domestic goat  cccaaatgattc--actttc--------------------------------------------------
                        Horse  ccaaaatgattt--actttc--------------------------------------------------
             White rhinoceros  ccaaaatgattt--actttt--------------------------------------------------
                          Cat  ccaaaatgattc--cctttt--------------------------------------------------
                          Dog  cctaaatgattg--ctcttt--------------------------------------------------
                      Ferret   ccaaaatgattc--cttttt--------------------------------------------------
                        Panda  ccaaaatgattc--cttttc--------------------------------------------------
               Pacific walrus  ccaaaatgattc--cttttc--------------------------------------------------
                 Weddell seal  ccgaaatgattc--cttttc--------------------------------------------------
             Black flying-fox  ctaaaatgattt--attttc--------------------------------------------------
                      Megabat  ctaaaatgattt--attttc--------------------------------------------------
                Big brown bat  ccaaaacgactt--gctttccactaaaccagtggtcggcaaactacggctctgttgactaatgagttcgc
                     Microbat  acaaaatgactt--cctttc--------------------------------------------------
              Star-nosed mole  tcaaaattattt--actttc--------------------------------------------------
                    Armadillo  ccaaagtaatct--actttc--------------------------------------------------
                       Rabbit  ======================================================================
                        Shrew  ======================================================================
                         Pika  ======================================================================
                     Hedgehog  ======================================================================
                       Tenrec  ======================================================================
          Cape elephant shrew  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
         David's myotis (bat)  ======================================================================
                       Lizard  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
          Medium ground finch  ======================================================================
           American alligator  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Collared flycatcher  ======================================================================
             Cape golden mole  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
                     Aardvark  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================
                   Coelacanth  ======================================================================
              Green seaturtle  ======================================================================
             Brush-tailed rat  ======================================================================
                   Chinchilla  ======================================================================
                X. tropicalis  ======================================================================
                   Guinea pig  ======================================================================
               Naked mole-rat  ----------------------------------------------------------------------

                        Human  ---------ca-g-taaactat-gcattgattctagcatag---aag--aaaaaca-ttatgc----tat
                        Chimp  ---------ca-g-taaactat-gcattgattctagcatag---aag--aaaaaca-ttatgc----tat
                      Gorilla  ---------ca-g-taaactat-gcattgattctagcatag---aag--aaaaaca-ttatgc----tat
                    Orangutan  ---------ca-g-taaactat-gcattgattctagcatag---aag--aaaaaca-ttatgc----tat
                       Gibbon  ---------ca-g-taaactat-gcattgattctagcatag---aag--aaaaaca-ttatgc----tat
                       Rhesus  ---------ca-g-taaactat-gcattgattctagcatag---aat--aaaaact-ttatgc----tac
          Crab-eating macaque  ---------ca-g-taaactat-gcattgattctagcatag---aat--aaaaact-ttatgc----tac
                       Baboon  ---------ca-g-taaactat-gcattgattctagcatag---aa---aaaaaca-ttatgc----tat
                 Green monkey  ---------ca-g-taaactat-gcattgattctagcatag---aat--aaaaaca-ttatgc----tat
                     Marmoset  ---------ca-c-taaactat-gcattgattatagcatag---aag--aaaaaca-ttatgc----tat
              Squirrel monkey  ---------ca-c-taaactat-gcattgattcgagcatag---aag--aaaaaca-ttatgc----tat
                     Bushbaby  ---------ca-c-taaac-----cactgtctatagcatat---aag--aaaaaca-ttttgc----cac
           Chinese tree shrew  ---------ca-c-taaactatggtactgactgtagcatag---aa--------ca-ttttgt----tat
                     Squirrel  ---------taca-aaaaccat-gtatcatctctaacactg---aat--aaaaatattt-tgc----tat
                 Prairie vole  ---------ca-g-taaatgat-atattgtctctagcaaag---aag--aaaaaca-ct-tgc----tgt
              Chinese hamster  ---------ca-g-taaatgat-atattgtctctagct-tg---gaa--gaaaaca-ct-tgc----tgt
               Golden hamster  ---------ca-g-taaatgat-atattgtctctagctagg---gaa--aaaaaca-ct-cgc----tgt
                        Mouse  ---------ca-t-tagatggt-atattgtctctagcatag---aag--agaaaca-gt-tgc----tgt
                          Rat  ---------ca-t-taaactct-atattgt-tctagcatag---aag------aca-gt-tgt----ttt
                          Pig  ---------ca-caaaaattac-gcagcagctctagcataa---aac--aaaaaca-ttttgctttatat
                       Alpaca  ---------cg-c-taaaccat-gcagtatctctatcatag---aa---aaaacca-tcttgc----tat
               Bactrian camel  ---------cg-c-taaaccat-gcagtatttctagcatag---aa---aaaacca-ttttgc----tat
                      Dolphin  ---------ca-c-taaaccat-gc---atctctagcatag---aag--aaaaaca-ttttgc----tat
                 Killer whale  ---------ca-c-taaaccat-gc---atctctagcatag---aag--aaaaaca-ttttgc----tat
             Tibetan antelope  ---------ca-t-taaaccat-gc---atctctagcatag---aag--aaaaaca-ttttgc----cag
                          Cow  ---------ca-t-taaaccat-gc---atctctagcatag---aag--aaaaaca-ttttgc----tat
                        Sheep  ---------ca-t-taaaccat-gc---atctctagcatag---aag--aaaaaca-ttttgc----cag
                Domestic goat  ---------ca-t-taaaccat-gc---atctctagcatag---aag--aaaaaca-ttttgc----cag
                        Horse  ---------ca-c-taaaccat-gcagcaactcgagcagag---aag--aaaaaca-ttttgc----tac
             White rhinoceros  ---------ca-c-taaaccat-gcagcaaatcgagcacag---aag--aaaagca-tcttgc----tat
                          Cat  ---------ca-c-taaaccac-gcaatgtcactagcatat---aag--aaaaaca-ttttgc----tat
                          Dog  ---------ca-c-taagccac-gcaacgtctctaacataa---aag--gaaaaca-tattgc----tat
                      Ferret   --------gca-c-taaaccat-gcaatgtctctagcataa---aag--aaaaaca-ttttgc----tat
                        Panda  ---------ca-c-taaaccat-gcaatgtctctagcatac---aag--aaaaaca-ttttgc----tat
               Pacific walrus  ---------ca-c-taaatcat-gcaatgtctctagcataa---aag--aaaaaca-ttttgc----tat
                 Weddell seal  ---------ca-c-taaatcat-gcaatgtctctagcataa---aag--aaaaaca-ttttgc----tat
             Black flying-fox  ---------ca-c-taaactat-gaagcatctctagtttag---cagaaaaaaaca-tttttc----tat
                      Megabat  ---------ca-c-taaactat-gaagcatctctagtttag---cagaaaaaaaca-tttttc----tat
                Big brown bat  cgactactgca-c-taaaccat-gaggcatctctagcgtag---aag--acaaaca-tttttc----tat
                     Microbat  ---------ca-c-tatacaat-gaggcatctctagggtag---aag--acaaacg-tttttc----tat
              Star-nosed mole  ---------ta-c-taaaccat-acaagagctccagtatag---aa---aaaaata-ttttgc----tat
                    Armadillo  ---------ca-c-tataccat-gcaacctctctaatacagcaaaag--aaaaaca-ttttgc----tat
                       Rabbit  ======================================================================
                        Shrew  ======================================================================
                         Pika  ======================================================================
                     Hedgehog  ======================================================================
                       Tenrec  ======================================================================
          Cape elephant shrew  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
         David's myotis (bat)  ======================================================================
                       Lizard  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                      Manatee  ======================================================================
                     Elephant  ======================================================================
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
          Medium ground finch  ======================================================================
           American alligator  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Collared flycatcher  ======================================================================
             Cape golden mole  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
                     Aardvark  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================
                   Coelacanth  ======================================================================
              Green seaturtle  ======================================================================
             Brush-tailed rat  ======================================================================
                   Chinchilla  ======================================================================
                X. tropicalis  ======================================================================
                   Guinea pig  ======================================================================
               Naked mole-rat  ----------------------------------------------------------------------

                        Human  atata-----------atcacatctaactacc--t-tgtgt--gtgaa-----tgt
                        Chimp  atata-----------atcacatctaactacc--t-tgtgt--gtgaa-----tgt
                      Gorilla  atata-----------atcacatctaactacc--t-tgtgt--gtgaa-----tgt
                    Orangutan  atata-----------atcacatctaactacc--t-tgtgt--gtgaa-----tgt
                       Gibbon  acata-----------atcacatctagctacc--t-agagt--gtgaa-----tgt
                       Rhesus  atata-----------atcacatctaactacc--t-cgtgt--gtgaa-----tgt
          Crab-eating macaque  atata-----------atcacatctaactacc--t-tgtgt--gtgaa-----tgt
                       Baboon  atata-----------atcacatctaactacc--t-tgtgt--gtgaa-----tgt
                 Green monkey  atata-----------atcacatctaactacc--t-tgtgt--gtgaa-----tgt
                     Marmoset  atata-----------atcgcttctaactaca--c-tgtgt--gtcaa-----tgt
              Squirrel monkey  atata-----------atcacatctaactaca--c-tgtgt--atcaa-----tgt
                     Bushbaby  ataca-----------atctcatctaactact--t-tgtat--gtgaa-----tgt
           Chinese tree shrew  acgca-----------ata----ttatacatt--t-tgtgt--gtgaa-----tgt
                     Squirrel  ataca-----------atctcatctattt-------tgtgt--gtgaa-----tgt
                 Prairie vole  tcatg-----------acttctcatgctg---------tgt--gtgtg-----tat
              Chinese hamster  tcatg-----------acctcttatgttt-----------t--gtgag-----tat
               Golden hamster  tcatg-----------acctcttatgttt-------tgtgt--gtgaa-----tat
                        Mouse  ccaca-----------acctcata-gttg-----------t--gtatg-----tat
                          Rat  ccata-----------accttg-----tg-----------t--gtgtg-----tgt
                          Pig  atgta------------------------att--t-cgtgt--actaatgttttgt
                       Alpaca  atatg------------------------gtt--t-tatgt--gtgaa-----tgt
               Bactrian camel  atatg------------------------gtt--t-tatgt--gtgaa-----tgt
                      Dolphin  ataca------------------------att--t-tgtat--gtgaa-----tgt
                 Killer whale  ataca------------------------att--t-tgtat--gtgaa-----tgt
             Tibetan antelope  ataca------------------------agt--t-tgtgt--gagaa-----cgt
                          Cow  ataca------------------------att--t-tgtgt--gggaa-----tgt
                        Sheep  ataca------------------------att--t-tgtgt--gagaa-----tgt
                Domestic goat  ataca------------------------att--t-tgtgt--gagaa-----tgt
                        Horse  ataca-----------atctcattt-actatt--t---tgtgcgtgaa-----tgt
             White rhinoceros  ataca-----------atctcacttaactatt--t---tgt--gtgaa-----tgt
                          Cat  ataaa-----------agctcacttatctatt--t---tgt--gtgaa-----tgt
                          Dog  ataca--------------tcatttacctatggcc---tgt--gtgaa-----tct
                      Ferret   ataca-----------atttcatttaactatt--c---tgt--gtgaa-----tgt
                        Panda  ataca-----------atctaatttatctatt------tgt--gtgaa-----tg-
               Pacific walrus  ataca-----------atctcatttatctatt--c---tgt--gtgaa-----tgt
                 Weddell seal  ataca-----------atctcatttatctatt--c---tgt--gtgaa-----tgt
             Black flying-fox  ataca-----------atctcatttaactatt--t-catgt--gtgaa-----tgt
                      Megabat  ataca-----------atctcatttaactatt--t-catgt--gtgaa-----tgt
                Big brown bat  ataca-----------atattatttaactatt--t-tgcgt--gtgaa-----tgt
                     Microbat  ataca-----------atattatttaactctt--t-tgtgt--gtgaa-----tgt
              Star-nosed mole  atacagtccatatacagtcccacttaactact--catgtgt--gtgaa-----tgt
                    Armadillo  aaata-----------gtgtcatct----gtt--t-aatgt--gtgaa-----tgt
                       Rabbit  ========================================================
                        Shrew  ========================================================
                         Pika  ========================================================
                     Hedgehog  ========================================================
                       Tenrec  ========================================================
          Cape elephant shrew  ========================================================
       Lesser Egyptian jerboa  ========================================================
         David's myotis (bat)  ========================================================
                       Lizard  ========================================================
       Yellowbelly pufferfish  ========================================================
                         Fugu  ========================================================
                      Manatee  ========================================================
                     Elephant  ========================================================
           Tibetan ground jay  ========================================================
                  Zebra finch  ========================================================
       White-throated sparrow  ========================================================
          Medium ground finch  ========================================================
           American alligator  ========================================================
                       Turkey  ========================================================
                      Chicken  ========================================================
             Peregrine falcon  ========================================================
                 Saker falcon  ========================================================
                  Rock pigeon  ========================================================
                   Budgerigar  ========================================================
                     Platypus  ========================================================
          Collared flycatcher  ========================================================
             Cape golden mole  ========================================================
     Chinese softshell turtle  ========================================================
               Painted turtle  ========================================================
                     Aardvark  ========================================================
                      Opossum  ========================================================
              Tasmanian devil  ========================================================
                   Coelacanth  ========================================================
              Green seaturtle  ========================================================
             Brush-tailed rat  ========================================================
                   Chinchilla  ========================================================
                X. tropicalis  ========================================================
                   Guinea pig  ========================================================
               Naked mole-rat  --------------------------------------------------------

Inserts between block 16 and 17 in window
B D                      Rat 184bp

Alignment block 17 of 784 in window, 117425180 - 117425180, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                   Gorilla  t
B D                 Orangutan  t
B D                    Gibbon  t
B D                    Rhesus  t
B D       Crab-eating macaque  t
B D                    Baboon  t
B D              Green monkey  t
B D                  Marmoset  t
B D           Squirrel monkey  t
B D                  Bushbaby  t
           Chinese tree shrew  c
B D                  Squirrel  t
                 Prairie vole  t
B D           Chinese hamster  t
               Golden hamster  t
B D                     Mouse  t
B D                       Pig  t
B D                    Alpaca  t
               Bactrian camel  t
B D                   Dolphin  t
                 Killer whale  t
             Tibetan antelope  g
B D                       Cow  t
B D                     Sheep  g
                Domestic goat  g
B D                     Horse  t
B D          White rhinoceros  t
B D                       Cat  t
B D                       Dog  t
B D                   Ferret   t
B D                     Panda  t
               Pacific walrus  t
                 Weddell seal  t
             Black flying-fox  t
B D                   Megabat  t
                Big brown bat  t
B D                  Microbat  t
              Star-nosed mole  t
B D                 Armadillo  t
B D                    Rabbit  =
B D                     Shrew  =
B D                      Pika  =
B D                  Hedgehog  =
B D                    Tenrec  =
         Cape elephant shrew  =
B D                       Rat  =
      Lesser Egyptian jerboa  =
        David's myotis (bat)  =
B D                    Lizard  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                   Manatee  =
B D                  Elephant  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D       Medium ground finch  =
B D        American alligator  =
B D                    Turkey  =
B D                   Chicken  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D               Rock pigeon  =
B D                Budgerigar  =
B D                  Platypus  =
  D       Collared flycatcher  =
            Cape golden mole  =
  D  Chinese softshell turtle  =
  D            Painted turtle  =
                    Aardvark  =
B D                   Opossum  =
B D           Tasmanian devil  =
B D                Coelacanth  =
  D           Green seaturtle  =
            Brush-tailed rat  =
                  Chinchilla  =
B D             X. tropicalis  =
B D                Guinea pig  =
B D            Naked mole-rat  -

Inserts between block 17 and 18 in window
               Big brown bat 173bp

Alignment block 18 of 784 in window, 117425181 - 117425188, 8 bps 
B D                     Human  ttgtatct
B D                     Chimp  ttgtatct
B D                   Gorilla  ttgtatct
B D                 Orangutan  ttgtatct
B D                    Gibbon  ttgtatct
B D                    Rhesus  ttgtatct
B D       Crab-eating macaque  ttgtatct
B D                    Baboon  ttgcatcc
B D              Green monkey  ttgtatct
B D                  Marmoset  ttgtatct
B D           Squirrel monkey  ttgtatct
B D                  Bushbaby  ttgtatct
           Chinese tree shrew  ttatatct
B D                  Squirrel  ttgtagct
                 Prairie vole  ttgtatct
B D           Chinese hamster  ttgtatct
               Golden hamster  ttgcatct
B D                     Mouse  ttgtgtct
B D                       Pig  ttgtattt
B D                    Alpaca  ttggattt
               Bactrian camel  ttggattt
B D                   Dolphin  ttgtattt
                 Killer whale  ttgtattt
             Tibetan antelope  ttgtattt
B D                       Cow  ttgtattt
B D                     Sheep  ttgtattt
                Domestic goat  ttgtattt
B D                     Horse  ttatatct
B D          White rhinoceros  ttgtatct
B D                       Cat  ttgtacct
B D                       Dog  ttggattt
B D                   Ferret   tttgattt
B D                     Panda  ttggattt
               Pacific walrus  ttggattt
                 Weddell seal  ttggattt
             Black flying-fox  ttgtatct
B D                   Megabat  ttgtatct
              Star-nosed mole  -tttgtct
B D                 Armadillo  tggtgtcc
B D                    Rabbit  ========
B D                     Shrew  ========
B D                      Pika  ========
B D                  Hedgehog  ========
B D                    Tenrec  ========
         Cape elephant shrew  ========
B D                       Rat  ========
      Lesser Egyptian jerboa  ========
        David's myotis (bat)  ========
               Big brown bat  ========
B D                    Lizard  ========
      Yellowbelly pufferfish  ========
B D                      Fugu  ========
B D                  Microbat  --------
B D                   Manatee  ========
B D                  Elephant  ========
          Tibetan ground jay  ========
B D               Zebra finch  ========
  D    White-throated sparrow  ========
B D       Medium ground finch  ========
B D        American alligator  ========
B D                    Turkey  ========
B D                   Chicken  ========
  D          Peregrine falcon  ========
  D              Saker falcon  ========
  D               Rock pigeon  ========
B D                Budgerigar  ========
B D                  Platypus  ========
  D       Collared flycatcher  ========
            Cape golden mole  ========
  D  Chinese softshell turtle  ========
  D            Painted turtle  ========
                    Aardvark  ========
B D                   Opossum  ========
B D           Tasmanian devil  ========
B D                Coelacanth  ========
  D           Green seaturtle  ========
            Brush-tailed rat  ========
                  Chinchilla  ========
B D             X. tropicalis  ========
B D                Guinea pig  ========
B D            Naked mole-rat  --------

Inserts between block 18 and 19 in window
                Prairie vole 31bp
B D          Chinese hamster 151bp
              Golden hamster 463bp
B D                    Mouse 20bp

Alignment block 19 of 784 in window, 117425189 - 117425202, 14 bps 
B D                     Human  aca-----a--tggcaaaaac---
B D                     Chimp  aca-----a--tggcaaaaac---
B D                   Gorilla  aca-----a--tggcaaaaac---
B D                 Orangutan  aca-----a--tggcaaaa-----
B D                    Gibbon  aca-----a--tggcaaaaac---
B D                    Rhesus  aca-----a--tggcaaaaac---
B D       Crab-eating macaque  aca-----a--tggcaaaaac---
B D                    Baboon  aca-----a--tggcaaaaac---
B D              Green monkey  aca-----a--tggcaaaaac---
B D                  Marmoset  aca-----a--cggcaataac---
B D           Squirrel monkey  aca-----a--tggcaaaaac---
B D                  Bushbaby  cca---------------------
           Chinese tree shrew  acaactaga--tggtaaatgc---
B D                  Squirrel  ata-----a---------------
B D                       Pig  aca-----a----gaaaa------
B D                    Alpaca  aca-----a----gtaga------
               Bactrian camel  aca-----a----gtaga------
B D                   Dolphin  aca-----g----gtaga------
                 Killer whale  aca-----g----gtaga------
             Tibetan antelope  aca-----a----gcaga------
B D                       Cow  aca-----a----gcaga------
B D                     Sheep  aca-----a----gcaga------
                Domestic goat  aca-----a----gcaga------
B D                     Horse  a---------------ga------
B D          White rhinoceros  a---------------ga------
B D                       Cat  aca-----a----gtaga------
B D                       Dog  aca-----g----gtacg------
B D                   Ferret   aca-----c----ataga------
B D                     Panda  aca-----a----gtaga------
               Pacific walrus  aca-----a--------a------
                 Weddell seal  aca-----a----gtaga------
             Black flying-fox  aca-----a----gtaga------
B D                   Megabat  aca-----a----gtaga------
              Star-nosed mole  aca-----a----ctaga------
B D                 Armadillo  aca-----agatggtaaa---gac
B D                    Rabbit  ========================
B D                     Shrew  ========================
B D                      Pika  ========================
B D                  Hedgehog  ========================
B D                    Tenrec  ========================
         Cape elephant shrew  ========================
              Golden hamster  ========================
                Prairie vole  ========================
B D                       Rat  ========================
B D                     Mouse  ========================
B D           Chinese hamster  ========================
      Lesser Egyptian jerboa  ========================
        David's myotis (bat)  ========================
               Big brown bat  ========================
B D                    Lizard  ========================
      Yellowbelly pufferfish  ========================
B D                      Fugu  ========================
B D                  Microbat  ------------------------
B D                   Manatee  ========================
B D                  Elephant  ========================
          Tibetan ground jay  ========================
B D               Zebra finch  ========================
  D    White-throated sparrow  ========================
B D       Medium ground finch  ========================
B D        American alligator  ========================
B D                    Turkey  ========================
B D                   Chicken  ========================
  D          Peregrine falcon  ========================
  D              Saker falcon  ========================
  D               Rock pigeon  ========================
B D                Budgerigar  ========================
B D                  Platypus  ========================
  D       Collared flycatcher  ========================
            Cape golden mole  ========================
  D  Chinese softshell turtle  ========================
  D            Painted turtle  ========================
                    Aardvark  ========================
B D                   Opossum  ========================
B D           Tasmanian devil  ========================
B D                Coelacanth  ========================
  D           Green seaturtle  ========================
            Brush-tailed rat  ========================
                  Chinchilla  ========================
B D             X. tropicalis  ========================
B D                Guinea pig  ========================
B D            Naked mole-rat  ------------------------

Inserts between block 19 and 20 in window
B D                Armadillo 84bp

Alignment block 20 of 784 in window, 117425203 - 117425203, 1 bps 
B D                     Human  c
B D                     Chimp  c
B D                   Gorilla  c
B D                    Gibbon  c
B D                    Rhesus  c
B D       Crab-eating macaque  c
B D                    Baboon  c
B D              Green monkey  c
B D                  Marmoset  c
B D           Squirrel monkey  c
           Chinese tree shrew  c
B D                    Rabbit  =
B D                     Shrew  =
B D                      Pika  =
B D                  Hedgehog  =
B D                    Tenrec  =
B D                 Armadillo  =
         Cape elephant shrew  =
B D          White rhinoceros  -
B D                     Panda  -
              Golden hamster  =
                Prairie vole  =
B D                       Rat  =
B D                     Mouse  =
B D           Chinese hamster  =
      Lesser Egyptian jerboa  =
               Domestic goat  -
B D                       Cow  -
B D                     Sheep  -
            Tibetan antelope  -
        David's myotis (bat)  =
               Big brown bat  =
                Killer whale  -
B D                    Lizard  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                    Alpaca  -
             Star-nosed mole  -
B D                  Microbat  -
B D                   Ferret   -
B D                     Horse  -
B D                  Squirrel  -
            Black flying-fox  -
B D                       Cat  -
B D                   Manatee  =
B D                  Elephant  =
              Bactrian camel  -
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D       Medium ground finch  =
B D        American alligator  =
B D                    Turkey  =
B D                   Chicken  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D               Rock pigeon  =
B D                Budgerigar  =
B D                  Platypus  =
  D       Collared flycatcher  =
            Cape golden mole  =
  D  Chinese softshell turtle  =
  D            Painted turtle  =
                    Aardvark  =
B D                   Opossum  =
B D           Tasmanian devil  =
B D                Coelacanth  =
  D           Green seaturtle  =
B D                  Bushbaby  -
B D                       Dog  -
              Pacific walrus  -
            Brush-tailed rat  =
                  Chinchilla  =
B D                       Pig  -
B D             X. tropicalis  =
                Weddell seal  -
B D                   Dolphin  -
B D                   Megabat  -
B D                 Orangutan  -
B D                Guinea pig  =
B D            Naked mole-rat  -

Inserts between block 20 and 21 in window
          Chinese tree shrew 138bp

Alignment block 21 of 784 in window, 117425204 - 117425250, 47 bps 
B D                     Human  acaattatttttgcatcaaactgaa--gtaaatgcttgttattcctttg
B D                     Chimp  acaattatttttgcatcaaactaaa--gtaaatgcttgttattcctttg
B D                   Gorilla  acaattatttttgcatcaaactaaa--gtaaatgcttgttattcctttg
B D                 Orangutan  acaattacttttgcaccaaactaaa--gtaaatgcttgttattcctttg
B D                    Gibbon  acaattacttttgcaccaacctaac--gtaaatgcttgttattcctttg
B D                    Rhesus  acaattacttttgcaccaacctaaa--gtaaatgcttgttattcctttg
B D       Crab-eating macaque  acaattacttttgcaccaacctaaa--gtaaatgcttgttattcctttg
B D                    Baboon  acaattacttttgcaccaacctaaa--gtaaatgcttgttattcctttg
B D              Green monkey  acaattacttttgcaccaacctaaa--gtaaatgcttgttattcctctg
B D                  Marmoset  acaattacttttgcatcaatctaaa--gtaaacgcctgttacttctttg
B D           Squirrel monkey  acaattacttttgcaccaacctaaa--gtaaatgcctgttactcctttg
B D                  Bushbaby  --------------actagac---a--gtaaattcctgttcctcttttg
B D                  Squirrel  --------------------ctagatggtaaatgcctgctatatctttg
B D                       Pig  -------------------------tggttgatgcttcttacttcttgt
B D                    Alpaca  -------------------------tggtaaatgcttgttactcctttg
               Bactrian camel  -------------------------tggtaaatgcctgttactcctttg
B D                   Dolphin  -------------------------cagtagatgcttgttactcctttg
                 Killer whale  -------------------------cagtagatgcttgttactcctttg
             Tibetan antelope  -------------------------cagtggatgcttattactcctttg
B D                       Cow  -------------------------cagtggatgcttattactcctttg
B D                     Sheep  -------------------------cagtggatgcttattactcctttg
                Domestic goat  -------------------------cagtggatgcttattactcctttg
B D                     Horse  -------------------------tggtaaatgcctgttactcctttg
B D          White rhinoceros  -------------------------tggtaaatgcctgtaactcctttg
B D                       Cat  -------------------------tagtaaatgcctgttactccttca
B D                       Dog  -------------------------tagtaaatgtctgttactcctttg
B D                   Ferret   -------------------------tagtaaatgcctgttacgcctttg
B D                     Panda  -------------------------tagtaaatgcctgttactcctttg
               Pacific walrus  -------------------------tagtaaatgcctgttactcctttg
                 Weddell seal  -------------------------tagtaaatgcctgttactcctttg
             Black flying-fox  -------------------------tcgtaaatgcctgttactcttttg
B D                   Megabat  -------------------------tcgtaaatgcctgttactcttttg
B D                  Microbat  -------------------------------------tttatttt----
              Star-nosed mole  -------------------------taatatatacttgctactcctttg
B D                    Rabbit  =================================================
B D                     Shrew  =================================================
B D                      Pika  =================================================
B D                  Hedgehog  =================================================
B D                    Tenrec  =================================================
B D                 Armadillo  =================================================
         Cape elephant shrew  =================================================
              Golden hamster  =================================================
                Prairie vole  =================================================
B D                       Rat  =================================================
B D                     Mouse  =================================================
B D           Chinese hamster  =================================================
      Lesser Egyptian jerboa  =================================================
        David's myotis (bat)  =================================================
               Big brown bat  =================================================
B D                    Lizard  =================================================
      Yellowbelly pufferfish  =================================================
B D                      Fugu  =================================================
B D                   Manatee  =================================================
B D                  Elephant  =================================================
          Tibetan ground jay  =================================================
B D               Zebra finch  =================================================
  D    White-throated sparrow  =================================================
B D       Medium ground finch  =================================================
B D        American alligator  =================================================
B D                    Turkey  =================================================
B D                   Chicken  =================================================
  D          Peregrine falcon  =================================================
  D              Saker falcon  =================================================
  D               Rock pigeon  =================================================
B D                Budgerigar  =================================================
B D                  Platypus  =================================================
  D       Collared flycatcher  =================================================
            Cape golden mole  =================================================
  D  Chinese softshell turtle  =================================================
  D            Painted turtle  =================================================
                    Aardvark  =================================================
B D                   Opossum  =================================================
B D           Tasmanian devil  =================================================
B D                Coelacanth  =================================================
  D           Green seaturtle  =================================================
            Brush-tailed rat  =================================================
          Chinese tree shrew  =================================================
                  Chinchilla  =================================================
B D             X. tropicalis  =================================================
B D                Guinea pig  =================================================
B D            Naked mole-rat  -------------------------------------------------

Inserts between block 21 and 22 in window
B D                 Squirrel 1bp

Alignment block 22 of 784 in window, 117425251 - 117425251, 1 bps 
B D                     Human  a
B D           Squirrel monkey  g
B D                  Bushbaby  g
B D                       Pig  g
B D                    Alpaca  g
               Bactrian camel  g
B D                   Dolphin  a
                 Killer whale  a
             Tibetan antelope  a
B D                       Cow  a
B D                     Sheep  a
                Domestic goat  a
B D                     Horse  g
B D          White rhinoceros  g
B D                       Cat  g
B D                       Dog  g
B D                   Ferret   g
B D                     Panda  g
               Pacific walrus  g
                 Weddell seal  g
             Black flying-fox  g
B D                   Megabat  g
              Star-nosed mole  g
B D                    Rabbit  =
B D                     Shrew  =
B D                      Pika  =
B D                  Hedgehog  =
B D                    Tenrec  =
B D                 Armadillo  =
         Cape elephant shrew  =
              Golden hamster  =
                Prairie vole  =
B D                       Rat  =
B D                     Mouse  =
B D           Chinese hamster  =
      Lesser Egyptian jerboa  =
        David's myotis (bat)  =
               Big brown bat  =
B D                    Lizard  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                  Microbat  -
B D                  Squirrel  =
B D                   Manatee  =
B D                  Elephant  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D       Medium ground finch  =
B D        American alligator  =
B D                    Turkey  =
B D                   Chicken  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D               Rock pigeon  =
B D                Budgerigar  =
B D                  Platypus  =
  D       Collared flycatcher  =
            Cape golden mole  =
  D  Chinese softshell turtle  =
  D            Painted turtle  =
                    Aardvark  =
B D                   Opossum  =
B D           Tasmanian devil  =
B D                Coelacanth  =
  D           Green seaturtle  =
            Brush-tailed rat  =
B D              Green monkey  -
B D       Crab-eating macaque  -
B D                    Rhesus  -
          Chinese tree shrew  =
                  Chinchilla  =
B D             X. tropicalis  =
B D                 Orangutan  -
B D                Guinea pig  =
B D            Naked mole-rat  -
B D                  Marmoset  -
B D                    Gibbon  -
B D                    Baboon  -
B D                   Gorilla  -
B D                     Chimp  -

Alignment block 23 of 784 in window, 117425252 - 117425252, 1 bps 
B D                     Human  g
B D                  Bushbaby  a
B D                  Squirrel  a
B D                       Pig  a
B D                    Alpaca  a
               Bactrian camel  a
             Tibetan antelope  t
B D                       Cow  t
B D                     Sheep  t
                Domestic goat  t
B D                     Horse  a
B D          White rhinoceros  a
B D                       Dog  a
B D                   Ferret   a
B D                     Panda  a
               Pacific walrus  a
                 Weddell seal  a
             Black flying-fox  a
B D                   Megabat  a
              Star-nosed mole  a
B D                    Rabbit  =
B D                     Shrew  =
B D                      Pika  =
B D                  Hedgehog  =
B D                    Tenrec  =
B D                 Armadillo  =
         Cape elephant shrew  =
              Golden hamster  =
                Prairie vole  =
B D                       Rat  =
B D                     Mouse  =
B D           Chinese hamster  =
      Lesser Egyptian jerboa  =
        David's myotis (bat)  =
               Big brown bat  =
                Killer whale  -
B D                    Lizard  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                  Microbat  -
B D                       Cat  -
B D                   Manatee  =
B D                  Elephant  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D       Medium ground finch  =
B D        American alligator  =
B D                    Turkey  =
B D                   Chicken  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D               Rock pigeon  =
B D                Budgerigar  =
B D                  Platypus  =
  D       Collared flycatcher  =
            Cape golden mole  =
  D  Chinese softshell turtle  =
  D            Painted turtle  =
                    Aardvark  =
B D                   Opossum  =
B D           Tasmanian devil  =
B D                Coelacanth  =
  D           Green seaturtle  =
            Brush-tailed rat  =
B D              Green monkey  -
B D       Crab-eating macaque  -
B D                    Rhesus  -
          Chinese tree shrew  =
                  Chinchilla  =
B D             X. tropicalis  =
B D                   Dolphin  -
B D                 Orangutan  -
B D                Guinea pig  =
B D            Naked mole-rat  -
B D           Squirrel monkey  -
B D                  Marmoset  -
B D                    Gibbon  -
B D                    Baboon  -
B D                   Gorilla  -
B D                     Chimp  -

Alignment block 24 of 784 in window, 117425253 - 117425257, 5 bps 
B D                     Human  taatt
B D                  Bushbaby  taact
B D                       Pig  taatt
B D                    Alpaca  taatt
               Bactrian camel  taatt
B D                   Dolphin  taatt
                 Killer whale  taatt
             Tibetan antelope  taatt
B D                       Cow  taatt
B D                     Sheep  taatt
                Domestic goat  taatt
B D          White rhinoceros  taatt
B D                       Cat  taatt
B D                       Dog  taatt
B D                   Ferret   taatt
B D                     Panda  taatt
               Pacific walrus  taatt
                 Weddell seal  taatt
             Black flying-fox  taatt
B D                   Megabat  taatt
              Star-nosed mole  tcatt
B D                    Rabbit  =====
B D                     Shrew  =====
B D                      Pika  =====
B D                  Hedgehog  =====
B D                    Tenrec  =====
B D                 Armadillo  =====
         Cape elephant shrew  =====
              Golden hamster  =====
                Prairie vole  =====
B D                       Rat  =====
B D                     Mouse  =====
B D           Chinese hamster  =====
      Lesser Egyptian jerboa  =====
        David's myotis (bat)  =====
               Big brown bat  =====
B D                    Lizard  =====
      Yellowbelly pufferfish  =====
B D                      Fugu  =====
B D                  Microbat  -----
B D                     Horse  -----
B D                  Squirrel  -----
B D                   Manatee  =====
B D                  Elephant  =====
          Tibetan ground jay  =====
B D               Zebra finch  =====
  D    White-throated sparrow  =====
B D       Medium ground finch  =====
B D        American alligator  =====
B D                    Turkey  =====
B D                   Chicken  =====
  D          Peregrine falcon  =====
  D              Saker falcon  =====
  D               Rock pigeon  =====
B D                Budgerigar  =====
B D                  Platypus  =====
  D       Collared flycatcher  =====
            Cape golden mole  =====
  D  Chinese softshell turtle  =====
  D            Painted turtle  =====
                    Aardvark  =====
B D                   Opossum  =====
B D           Tasmanian devil  =====
B D                Coelacanth  =====
  D           Green seaturtle  =====
            Brush-tailed rat  =====
B D              Green monkey  -----
B D       Crab-eating macaque  -----
B D                    Rhesus  -----
          Chinese tree shrew  =====
                  Chinchilla  =====
B D             X. tropicalis  =====
B D                 Orangutan  -----
B D                Guinea pig  =====
B D            Naked mole-rat  -----
B D           Squirrel monkey  -----
B D                  Marmoset  -----
B D                    Gibbon  -----
B D                    Baboon  -----
B D                   Gorilla  -----
B D                     Chimp  -----

Inserts between block 24 and 25 in window
B D                 Bushbaby 1bp
               Domestic goat 9bp

Alignment block 25 of 784 in window, 117425258 - 117425258, 1 bps 
B D                     Human  t
B D                       Pig  t
B D                    Alpaca  t
               Bactrian camel  t
B D                   Dolphin  t
                 Killer whale  t
             Tibetan antelope  t
B D                       Cow  t
B D                     Sheep  t
B D          White rhinoceros  t
B D                       Cat  t
B D                       Dog  t
B D                   Ferret   t
B D                     Panda  t
               Pacific walrus  t
                 Weddell seal  t
             Black flying-fox  t
B D                   Megabat  t
              Star-nosed mole  t
B D                    Rabbit  =
B D                     Shrew  =
B D                      Pika  =
B D                  Hedgehog  =
B D                    Tenrec  =
B D                 Armadillo  =
         Cape elephant shrew  =
              Golden hamster  =
                Prairie vole  =
B D                       Rat  =
B D                     Mouse  =
B D           Chinese hamster  =
      Lesser Egyptian jerboa  =
               Domestic goat  =
        David's myotis (bat)  =
               Big brown bat  =
B D                    Lizard  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                  Microbat  -
B D                     Horse  -
B D                  Squirrel  -
B D                   Manatee  =
B D                  Elephant  =
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D       Medium ground finch  =
B D        American alligator  =
B D                    Turkey  =
B D                   Chicken  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D               Rock pigeon  =
B D                Budgerigar  =
B D                  Platypus  =
  D       Collared flycatcher  =
            Cape golden mole  =
  D  Chinese softshell turtle  =
  D            Painted turtle  =
                    Aardvark  =
B D                   Opossum  =
B D           Tasmanian devil  =
B D                Coelacanth  =
  D           Green seaturtle  =
B D                  Bushbaby  =
            Brush-tailed rat  =
B D              Green monkey  -
B D       Crab-eating macaque  -
B D                    Rhesus  -
          Chinese tree shrew  =
                  Chinchilla  =
B D             X. tropicalis  =
B D                 Orangutan  -
B D                Guinea pig  =
B D            Naked mole-rat  -
B D           Squirrel monkey  -
B D                  Marmoset  -
B D                    Gibbon  -
B D                    Baboon  -
B D                   Gorilla  -
B D                     Chimp  -

Alignment block 26 of 784 in window, 117425259 - 117425259, 1 bps 
B D                     Human  c
             Tibetan antelope  c
B D                       Cow  c
B D                     Sheep  c
B D                       Dog  c
B D                   Ferret   c
B D                     Panda  c
B D                  Microbat  c
              Star-nosed mole  c
B D                    Rabbit  =
B D                     Shrew  =
B D                      Pika  =
B D                  Hedgehog  =
B D                    Tenrec  =
B D                 Armadillo  =
         Cape elephant shrew  =
B D          White rhinoceros  -
              Golden hamster  =
                Prairie vole  =
B D                       Rat  =
B D                     Mouse  =
B D           Chinese hamster  =
      Lesser Egyptian jerboa  =
               Domestic goat  =
        David's myotis (bat)  =
               Big brown bat  =
                Killer whale  -
B D                    Lizard  =
      Yellowbelly pufferfish  =
B D                      Fugu  =
B D                    Alpaca  -
B D                     Horse  -
B D                  Squirrel  -
            Black flying-fox  -
B D                       Cat  -
B D                   Manatee  =
B D                  Elephant  =
              Bactrian camel  -
          Tibetan ground jay  =
B D               Zebra finch  =
  D    White-throated sparrow  =
B D       Medium ground finch  =
B D        American alligator  =
B D                    Turkey  =
B D                   Chicken  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D               Rock pigeon  =
B D                Budgerigar  =
B D                  Platypus  =
  D       Collared flycatcher  =
            Cape golden mole  =
  D  Chinese softshell turtle  =
  D            Painted turtle  =
                    Aardvark  =
B D                   Opossum  =
B D           Tasmanian devil  =
B D                Coelacanth  =
  D           Green seaturtle  =
B D                  Bushbaby  =
              Pacific walrus  -
            Brush-tailed rat  =
B D              Green monkey  -
B D       Crab-eating macaque  -
B D                    Rhesus  -
          Chinese tree shrew  =
                  Chinchilla  =
B D                       Pig  -
B D             X. tropicalis  =
                Weddell seal  -
B D                   Dolphin  -
B D                   Megabat  -
B D                 Orangutan  -
B D                Guinea pig  =
B D            Naked mole-rat  -
B D           Squirrel monkey  -
B D                  Marmoset  -
B D                    Gibbon  -
B D                    Baboon  -
B D                   Gorilla  -
B D                     Chimp  -

Inserts between block 26 and 27 in window
            Tibetan antelope 7bp
B D                      Cow 7bp
B D                    Sheep 7bp
B D                      Dog 294bp
B D                  Ferret  572bp
B D                    Panda 256bp
             Star-nosed mole 233bp

Alignment block 27 of 784 in window, 117425260 - 117425392, 133 bps 
B D                     Human  ttttttttttttttttttttttttgagacggagtctcgctttgtcgcccaggctggagtgcagtggcgcg
B D                  Microbat  tattttcc------------------------atcaccatttacccc-----------------------
B D                    Rabbit  ======================================================================
B D                     Shrew  ======================================================================
B D                      Pika  ======================================================================
B D                  Hedgehog  ======================================================================
B D                    Tenrec  ======================================================================
B D                 Armadillo  ======================================================================
         Cape elephant shrew  ======================================================================
B D          White rhinoceros  ----------------------------------------------------------------------
B D                     Panda  ======================================================================
              Golden hamster  ======================================================================
                Prairie vole  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
B D           Chinese hamster  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
               Domestic goat  ======================================================================
B D                       Cow  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
        David's myotis (bat)  ======================================================================
               Big brown bat  ======================================================================
                Killer whale  ----------------------------------------------------------------------
B D                    Lizard  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                    Alpaca  ----------------------------------------------------------------------
             Star-nosed mole  ======================================================================
B D                   Ferret   ======================================================================
B D                     Horse  ----------------------------------------------------------------------
B D                  Squirrel  ----------------------------------------------------------------------
            Black flying-fox  ----------------------------------------------------------------------
B D                       Cat  ----------------------------------------------------------------------
B D                   Manatee  ======================================================================
B D                  Elephant  ======================================================================
              Bactrian camel  ----------------------------------------------------------------------
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
  D    White-throated sparrow  ======================================================================
B D       Medium ground finch  ======================================================================
B D        American alligator  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D                Budgerigar  ======================================================================
B D                  Platypus  ======================================================================
  D       Collared flycatcher  ======================================================================
            Cape golden mole  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
                    Aardvark  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                Coelacanth  ======================================================================
  D           Green seaturtle  ======================================================================
B D                  Bushbaby  ======================================================================
B D                       Dog  ======================================================================
              Pacific walrus  ----------------------------------------------------------------------
            Brush-tailed rat  ======================================================================
B D              Green monkey  ----------------------------------------------------------------------
B D       Crab-eating macaque  ----------------------------------------------------------------------
B D                    Rhesus  ----------------------------------------------------------------------
          Chinese tree shrew  ======================================================================
                  Chinchilla  ======================================================================
B D                       Pig  ----------------------------------------------------------------------
B D             X. tropicalis  ======================================================================
                Weddell seal  ----------------------------------------------------------------------
B D                   Dolphin  ----------------------------------------------------------------------
B D                   Megabat  ----------------------------------------------------------------------
B D                 Orangutan  ----------------------------------------------------------------------
B D                Guinea pig  ======================================================================
B D            Naked mole-rat  ----------------------------------------------------------------------
B D           Squirrel monkey  ----------------------------------------------------------------------
B D                  Marmoset  ----------------------------------------------------------------------
B D                    Gibbon  ----------------------------------------------------------------------
B D                    Baboon  ----------------------------------------------------------------------
B D                   Gorilla  ----------------------------------------------------------------------
B D                     Chimp  ----------------------------------------------------------------------

                        Human  atctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgc
                     Microbat  -------ctccatgcattttccaccttc----tccatccctgccccctacatcaccacactgc
                       Rabbit  ===============================================================
                        Shrew  ===============================================================
                         Pika  ===============================================================
                     Hedgehog  ===============================================================
                       Tenrec  ===============================================================
                    Armadillo  ===============================================================
          Cape elephant shrew  ===============================================================
             White rhinoceros  ---------------------------------------------------------------
                        Panda  ===============================================================
               Golden hamster  ===============================================================
                 Prairie vole  ===============================================================
                          Rat  ===============================================================
                        Mouse  ===============================================================
              Chinese hamster  ===============================================================
       Lesser Egyptian jerboa  ===============================================================
                Domestic goat  ===============================================================
                          Cow  ===============================================================
                        Sheep  ===============================================================
             Tibetan antelope  ===============================================================
         David's myotis (bat)  ===============================================================
                Big brown bat  ===============================================================
                 Killer whale  ---------------------------------------------------------------
                       Lizard  ===============================================================
       Yellowbelly pufferfish  ===============================================================
                         Fugu  ===============================================================
                       Alpaca  ---------------------------------------------------------------
              Star-nosed mole  ===============================================================
                      Ferret   ===============================================================
                        Horse  ---------------------------------------------------------------
                     Squirrel  ---------------------------------------------------------------
             Black flying-fox  ---------------------------------------------------------------
                          Cat  ---------------------------------------------------------------
                      Manatee  ===============================================================
                     Elephant  ===============================================================
               Bactrian camel  ---------------------------------------------------------------
           Tibetan ground jay  ===============================================================
                  Zebra finch  ===============================================================
       White-throated sparrow  ===============================================================
          Medium ground finch  ===============================================================
           American alligator  ===============================================================
                       Turkey  ===============================================================
                      Chicken  ===============================================================
             Peregrine falcon  ===============================================================
                 Saker falcon  ===============================================================
                  Rock pigeon  ===============================================================
                   Budgerigar  ===============================================================
                     Platypus  ===============================================================
          Collared flycatcher  ===============================================================
             Cape golden mole  ===============================================================
     Chinese softshell turtle  ===============================================================
               Painted turtle  ===============================================================
                     Aardvark  ===============================================================
                      Opossum  ===============================================================
              Tasmanian devil  ===============================================================
                   Coelacanth  ===============================================================
              Green seaturtle  ===============================================================
                     Bushbaby  ===============================================================
                          Dog  ===============================================================
               Pacific walrus  ---------------------------------------------------------------
             Brush-tailed rat  ===============================================================
                 Green monkey  ---------------------------------------------------------------
          Crab-eating macaque  ---------------------------------------------------------------
                       Rhesus  ---------------------------------------------------------------
           Chinese tree shrew  ===============================================================
                   Chinchilla  ===============================================================
                          Pig  ---------------------------------------------------------------
                X. tropicalis  ===============================================================
                 Weddell seal  ---------------------------------------------------------------
                      Dolphin  ---------------------------------------------------------------
                      Megabat  ---------------------------------------------------------------
                    Orangutan  ---------------------------------------------------------------
                   Guinea pig  ===============================================================
               Naked mole-rat  ---------------------------------------------------------------
              Squirrel monkey  ---------------------------------------------------------------
                     Marmoset  ---------------------------------------------------------------
                       Gibbon  ---------------------------------------------------------------
                       Baboon  ---------------------------------------------------------------
                      Gorilla  ---------------------------------------------------------------
                        Chimp  ---------------------------------------------------------------

Inserts between block 27 and 28 in window
B D                 Microbat 104bp

Alignment block 28 of 784 in window, 117425393 - 117425561, 169 bps 
B D                     Human  gtagctgggactacaggcgcccgccaccacgcccagctaattttttttgtgttttttagtagagacgggg
B D                    Rabbit  ======================================================================
B D                     Shrew  ======================================================================
B D                      Pika  ======================================================================
B D                  Hedgehog  ======================================================================
B D                    Tenrec  ======================================================================
B D                 Armadillo  ======================================================================
         Cape elephant shrew  ======================================================================
B D          White rhinoceros  ----------------------------------------------------------------------
B D                     Panda  ======================================================================
              Golden hamster  ======================================================================
                Prairie vole  ======================================================================
B D                       Rat  ======================================================================
B D                     Mouse  ======================================================================
B D           Chinese hamster  ======================================================================
      Lesser Egyptian jerboa  ======================================================================
               Domestic goat  ======================================================================
B D                       Cow  ======================================================================
B D                     Sheep  ======================================================================
            Tibetan antelope  ======================================================================
        David's myotis (bat)  ======================================================================
               Big brown bat  ======================================================================
                Killer whale  ----------------------------------------------------------------------
B D                    Lizard  ======================================================================
      Yellowbelly pufferfish  ======================================================================
B D                      Fugu  ======================================================================
B D                    Alpaca  ----------------------------------------------------------------------
             Star-nosed mole  ======================================================================
B D                  Microbat  ======================================================================
B D                   Ferret   ======================================================================
B D                     Horse  ----------------------------------------------------------------------
B D                  Squirrel  ----------------------------------------------------------------------
            Black flying-fox  ----------------------------------------------------------------------
B D                       Cat  ----------------------------------------------------------------------
B D                   Manatee  ======================================================================
B D                  Elephant  ======================================================================
              Bactrian camel  ----------------------------------------------------------------------
          Tibetan ground jay  ======================================================================
B D               Zebra finch  ======================================================================
  D    White-throated sparrow  ======================================================================
B D       Medium ground finch  ======================================================================
B D        American alligator  ======================================================================
B D                    Turkey  ======================================================================
B D                   Chicken  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  ======================================================================
  D               Rock pigeon  ======================================================================
B D                Budgerigar  ======================================================================
B D                  Platypus  ======================================================================
  D       Collared flycatcher  ======================================================================
            Cape golden mole  ======================================================================
  D  Chinese softshell turtle  ======================================================================
  D            Painted turtle  ======================================================================
                    Aardvark  ======================================================================
B D                   Opossum  ======================================================================
B D           Tasmanian devil  ======================================================================
B D                Coelacanth  ======================================================================
  D           Green seaturtle  ======================================================================
B D                  Bushbaby  ======================================================================
B D                       Dog  ======================================================================
              Pacific walrus  ----------------------------------------------------------------------
            Brush-tailed rat  ======================================================================
B D              Green monkey  ----------------------------------------------------------------------
B D       Crab-eating macaque  ----------------------------------------------------------------------
B D                    Rhesus  ----------------------------------------------------------------------
          Chinese tree shrew  ======================================================================
                  Chinchilla  ======================================================================
B D                       Pig  ----------------------------------------------------------------------
B D             X. tropicalis  ======================================================================
                Weddell seal  ----------------------------------------------------------------------
B D                   Dolphin  ----------------------------------------------------------------------
B D                   Megabat  ----------------------------------------------------------------------
B D                 Orangutan  ----------------------------------------------------------------------
B D                Guinea pig  ======================================================================
B D            Naked mole-rat  ----------------------------------------------------------------------
B D           Squirrel monkey  ----------------------------------------------------------------------
B D                  Marmoset  ----------------------------------------------------------------------
B D                    Gibbon  ----------------------------------------------------------------------
B D                    Baboon  ----------------------------------------------------------------------
B D                   Gorilla  ----------------------------------------------------------------------
B D                     Chimp  ----------------------------------------------------------------------

                        Human  tttcactgtgttagccaggatggtctcgatctcctgacctcgtgatccgcccgccttggactcccaaagt
                       Rabbit  ======================================================================
                        Shrew  ======================================================================
                         Pika  ======================================================================
                     Hedgehog  ======================================================================
                       Tenrec  ======================================================================
                    Armadillo  ======================================================================
          Cape elephant shrew  ======================================================================
             White rhinoceros  ----------------------------------------------------------------------
                        Panda  ======================================================================
               Golden hamster  ======================================================================
                 Prairie vole  ======================================================================
                          Rat  ======================================================================
                        Mouse  ======================================================================
              Chinese hamster  ======================================================================
       Lesser Egyptian jerboa  ======================================================================
                Domestic goat  ======================================================================
                          Cow  ======================================================================
                        Sheep  ======================================================================
             Tibetan antelope  ======================================================================
         David's myotis (bat)  ======================================================================
                Big brown bat  ======================================================================
                 Killer whale  ----------------------------------------------------------------------
                       Lizard  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                         Fugu  ======================================================================
                       Alpaca  ----------------------------------------------------------------------
              Star-nosed mole  ======================================================================
                     Microbat  ======================================================================
                      Ferret   ======================================================================
                        Horse  ----------------------------------------------------------------------
                     Squirrel  ----------------------------------------------------------------------
             Black flying-fox  ----------------------------------------------------------------------
                          Cat  ----------------------------------------------------------------------
                      Manatee  ======================================================================
                     Elephant  ======================================================================
               Bactrian camel  ----------------------------------------------------------------------
           Tibetan ground jay  ======================================================================
                  Zebra finch  ======================================================================
       White-throated sparrow  ======================================================================
          Medium ground finch  ======================================================================
           American alligator  ======================================================================
                       Turkey  ======================================================================
                      Chicken  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  ======================================================================
                  Rock pigeon  ======================================================================
                   Budgerigar  ======================================================================
                     Platypus  ======================================================================
          Collared flycatcher  ======================================================================
             Cape golden mole  ======================================================================
     Chinese softshell turtle  ======================================================================
               Painted turtle  ======================================================================
                     Aardvark  ======================================================================
                      Opossum  ======================================================================
              Tasmanian devil  ======================================================================
                   Coelacanth  ======================================================================
              Green seaturtle  ======================================================================
                     Bushbaby  ======================================================================
                          Dog  ======================================================================
               Pacific walrus  ----------------------------------------------------------------------
             Brush-tailed rat  ======================================================================
                 Green monkey  ----------------------------------------------------------------------
          Crab-eating macaque  ----------------------------------------------------------------------
                       Rhesus  ----------------------------------------------------------------------
           Chinese tree shrew  ======================================================================
                   Chinchilla  ======================================================================
                          Pig  ----------------------------------------------------------------------
                X. tropicalis  ======================================================================
                 Weddell seal  ----------------------------------------------------------------------
                      Dolphin  ----------------------------------------------------------------------
                      Megabat  ----------------------------------------------------------------------
                    Orangutan  ----------------------------------------------------------------------
                   Guinea pig  ======================================================================
               Naked mole-rat  ----------------------------------------------------------------------
              Squirrel monkey  ----------------------------------------------------------------------
                     Marmoset  ----------------------------------------------------------------------
                       Gibbon  ----------------------------------------------------------------------
                       Baboon  ----------------------------------------------------------------------
                      Gorilla  ----------------------------------------------------------------------
                        Chimp  ----------------------------------------------------------------------

                        Human  gctgggattacaggcgtgagccaccgcgc
                       Rabbit  =============================
                        Shrew  =============================
                         Pika  =============================
                     Hedgehog  =============================
                       Tenrec  =============================
                    Armadillo  =============================
          Cape elephant shrew  =============================
             White rhinoceros  -----------------------------
                        Panda  =============================
               Golden hamster  =============================
                 Prairie vole  =============================
                          Rat  =============================
                        Mouse  =============================
              Chinese hamster  =============================
       Lesser Egyptian jerboa  =============================
                Domestic goat  =============================
                          Cow  =============================
                        Sheep  =============================
             Tibetan antelope  =============================
         David's myotis (bat)  =============================
                Big brown bat  =============================
                 Killer whale  -----------------------------
                       Lizard  =============================
       Yellowbelly pufferfish  =============================
                         Fugu  =============================
                       Alpaca  -----------------------------
              Star-nosed mole  =============================
                     Microbat  =============================
                      Ferret   =============================
                        Horse  -----------------------------
                     Squirrel  -----------------------------
             Black flying-fox  -----------------------------
                          Cat  -----------------------------
                      Manatee  =============================
                     Elephant  =============================
               Bactrian camel  -----------------------------
           Tibetan ground jay  =============================
                  Zebra finch  =============================
       White-throated sparrow  =============================
          Medium ground finch  =============================
           American alligator  =============================
                       Turkey  =============================
                      Chicken  =============================
             Peregrine falcon  =============================
                 Saker falcon  =============================
                  Rock pigeon  =============================
                   Budgerigar  =============================
                     Platypus  =============================
          Collared flycatcher  =============================
             Cape golden mole  =============================
     Chinese softshell turtle  =============================
               Painted turtle  =============================
                     Aardvark  =============================
                      Opossum  =============================
              Tasmanian devil  =============================
                   Coelacanth  =============================
              Green seaturtle  =============================
                     Bushbaby  =============================
                          Dog  =============================
               Pacific walrus  -----------------------------
             Brush-tailed rat  =============================
                 Green monkey  -----------------------------
          Crab-eating macaque  -----------------------------
                       Rhesus  -----------------------------
           Chinese tree shrew  =============================
                   Chinchilla  =============================
                          Pig  -----------------------------
                X. tropicalis  =============================
                 Weddell seal  -----------------------------
                      Dolphin  -----------------------------
                      Megabat  -----------------------------
                    Orangutan  -----------------------------
                   Guinea pig  =============================
               Naked mole-rat  -----------------------------
              Squirrel monkey  -----------------------------
                     Marmoset  -----------------------------
                       Gibbon  -----------------------------
                       Baboon  -----------------------------
                      Gorilla  -----------------------------
                        Chimp  -----------------------------

Alignment block 29 of 784 in window, 117425562 - 117425567, 6 bps 
B D                     Human  ccggcc
B D                 Armadillo  ccagtg
B D                    Rabbit  ======
B D                     Shrew  ======
B