Multiz Alignments of 100 Vertebrates
 

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Alignment block 1 of 956 in window, 146636859 - 146636865, 7 bps 
B D                     Human  gcactt-a
B D                     Chimp  gcactt-a
B D                   Gorilla  gcactt-a
B D                 Orangutan  gcactt-a
B D                    Gibbon  gcactt-a
B D                    Rhesus  gcactt-a
B D       Crab-eating macaque  gcactt-a
B D                    Baboon  gcactt-a
B D              Green monkey  gcactt-a
B D                  Marmoset  gcactt-a
B D           Squirrel monkey  gcactt-a
B D                  Bushbaby  gcacttaa
           Chinese tree shrew  gcactc-a
B D                  Squirrel  gcactt-a
       Lesser Egyptian jerboa  gcactt-a
                 Prairie vole  gcactt-a
B D           Chinese hamster  gcactt-a
               Golden hamster  gcactt-a
B D                     Mouse  gcactt-a
B D                       Rat  gcactt-a
B D            Naked mole-rat  gtacgc-a
B D                Guinea pig  atactt-a
                   Chinchilla  atactt-a
             Brush-tailed rat  atactt-a
B D                    Rabbit  acactt-g
B D                      Pika  acgttt-a
B D                       Pig  gcattt-a
B D                    Alpaca  gcattt-a
               Bactrian camel  gcattt-a
B D                   Dolphin  gtgatg-a
                 Killer whale  gcattt-a
             Tibetan antelope  gcattt-a
B D                       Cow  gcattt-a
B D                     Sheep  gcattt-a
                Domestic goat  gcattt-a
B D                     Horse  gcgttt-a
B D          White rhinoceros  gcattt-a
B D                       Cat  gcattt-a
B D                       Dog  gcattt-a
B D                   Ferret   gcattt-a
B D                     Panda  gcattt-a
               Pacific walrus  gcattt-a
                 Weddell seal  gcattt-a
             Black flying-fox  gcattg-a
B D                   Megabat  gcattg-a
                Big brown bat  acattt-a
         David's myotis (bat)  acattt-a
B D                  Microbat  acattt-a
B D                  Hedgehog  gcattt-t
B D                     Shrew  gcgttt-a
              Star-nosed mole  gcattt-g
B D                  Elephant  gcactt-a
          Cape elephant shrew  ccactt-a
B D                   Manatee  gcactt-a
             Cape golden mole  gcactt-a
B D                    Tenrec  gcactt-a
                     Aardvark  gcactt-a
B D                 Armadillo  gcactt-a
B D                   Opossum  gcacat-a
B D           Tasmanian devil  gcacat-a
B D                   Wallaby  gcacag-a
B D                  Platypus  gcact---
  D               Rock pigeon  gcactt-a
  D              Saker falcon  gcactt-a
  D          Peregrine falcon  gcactt-a
  D       Collared flycatcher  gcactt-a
B D       Medium ground finch  gcactt-a
B D               Zebra finch  gcactt-a
           Tibetan ground jay  gcactt-a
B D                Budgerigar  gcactt-a
  D                    Parrot  gcactt-a
  D             Scarlet macaw  gcactt-a
  D              Mallard duck  gcactt-a
B D                   Chicken  gcactt-c
B D        American alligator  gcactt-a
  D           Green seaturtle  gcactt-a
  D            Painted turtle  gcactt-a
  D  Chinese softshell turtle  gcactt-a
  D    Spiny softshell turtle  gcactt-a
B D                 Zebrafish  gccatt-a
         Pundamilia nyererei  ========
         Princess of Burundi  ========
      Yellowbelly pufferfish  ========
                 Spotted gar  ========
B D                      Fugu  ========
    Mexican tetra (cavefish)  ========
B D               Stickleback  ========
                 Zebra mbuna  ========
       Burton's mouthbreeder  ========
          Southern platyfish  ========
B D                    Lizard  ========
  D    White-throated sparrow  ========
B D                Coelacanth  ========

Inserts between block 1 and 2 in window
B D                  Opossum 1bp
B D          Tasmanian devil 1bp
B D                  Wallaby 1bp
B D                Zebrafish 324bp

Alignment block 2 of 956 in window, 146636866 - 146636905, 40 bps 
B D                     Human  cttgaacc-gtccgg--cac-----aagc-cac-attcattc--acgtgaac
B D                     Chimp  cttgaacc-gtccgg--cac-----aagc-cac-attcattc--acgtgaac
B D                   Gorilla  cttgaacc-gtccgg--cac-----aagc-cac-attcattc--acgtgaac
B D                 Orangutan  cttgaacc-gtccgg--cac-----aagc-cac-attcattc--acgtcaac
B D                    Gibbon  cttgaacc-gtccgg--cac-----aagc-cac-attcattc--atgtcaac
B D                    Rhesus  cttgaact-gtccgg--cac-----aagc-cac-attcattc--acttcaac
B D       Crab-eating macaque  cttgaact-gtccgg--cac-----aagc-cac-attcattc--acttcaac
B D                    Baboon  cttgaact-gtccgg--cac-----aagc-cac-attcattc--acttcaac
B D              Green monkey  cttgaact-gtccgg--cac-----aagc-cac-attcattc--acttcaac
B D                  Marmoset  cttgaacc-atccga--cac-----aagc-cac-attcattc--acgtcaac
B D           Squirrel monkey  cttgaacc-gtccgg--cgc-----aagc-cac-attcattc--acgtcaac
B D                  Bushbaby  cgcccacc-gtccgg--tgc-----aagt-cac-attcatt---atgtcaac
           Chinese tree shrew  cttgaacc-atccgg--cac-----aagc-cac-atccattca-atgtcaac
B D                  Squirrel  cttgaacc-gtccgg--cac-----aagt-cag-gttcattc--atgtcaac
       Lesser Egyptian jerboa  cttgaacc-gtccgg--cat------agt-cac-gttcattc--atgtcaac
                 Prairie vole  cttgaaca-gccttg--cac------agc-------tccttc--atgtcagc
B D           Chinese hamster  cttggaca-gtcttg--tac------agc-ccc-gttccttc--atgtcagc
               Golden hamster  cttgaaca-gtcttt--cac------agc-ccc-gttccttc--atgtcagc
B D                     Mouse  cttgaaca-gtcttgcacac------agc-cac-gttctttc--atgtcaac
B D                       Rat  cttgaaca-gtcttgcacac------agc-cac-gttctttc--atgtcaac
B D            Naked mole-rat  ctcgaact-gctcgg--ctc-----cagc-cac-gttcattc--atgtcatc
B D                Guinea pig  tttgaaca-gctcgg--ccc-----aagt-cac-gttcactc--atatcatc
                   Chinchilla  cttgaact-gctcgg--ccc-----aagt-cat-gttcatgc--atgtcacc
             Brush-tailed rat  cttgaact-gctcgg--tcc-----aagt-cac-gttcactc--gtgtcatc
B D                    Rabbit  cttgaacc-gttcgg--cac-----aagc-ctc-actcattc--atgtcaac
B D                      Pika  cttgaacc-attt-g--tac-----gagc-tac-attcattc--atgtcaac
B D                       Pig  ctcgaacc-gtccgg--cgc-----aagc-cac-attcgttc--atgtcaac
B D                    Alpaca  cttgaacc-atccgg--cac-----aagg-cac-gttcattt--atgtcaac
               Bactrian camel  cttgaacc-atccag--cac-----aagc-cac-gttcattc--atgtcaac
                 Killer whale  cttgaacc-gaccgg--cac-----aaga-cac-attcattc--atgtcaac
             Tibetan antelope  cttgaacc-gaccgg--cgc-----aagc-cac-attcattc--atgtcaac
B D                       Cow  cttgaacc-gaccgg--tgc-----aagc-cac-attcattc--atgtcaac
B D                     Sheep  cttgaacc-gaccgg--cgc-----aagc-cac-attcattc--atgtcaac
                Domestic goat  cttgaacc-gaccgg--cgc-----aagc-cac-agtcattc--atgtcaac
B D                     Horse  cttgaatc-attcgg--cgc-----aaac-cac-acgcattc--atgttaac
B D          White rhinoceros  cttgaatc-gttcgg--tttacttgaaac-cac-atatattc--atgtcaac
B D                       Cat  cttgaacc-gtccgg--tgc-----aagc-cac-attcattc--atgtcaac
B D                       Dog  cgcgaacc-gtccag--cgc-----aagc-cac-attcattc--atgtcaac
B D                   Ferret   cttgaacc-gtccag--cgc-----aagc-cac-attcattc--atgtcaac
B D                     Panda  cttgaacc-gtccag--tgc-----aagc-cac-attcattc--atgtcaac
               Pacific walrus  ctagaacc-gtccag--cgc-----aagc-cac-attcattc--atgtcaac
                 Weddell seal  ctagaacc-gtccag--cgc-----aagc-cac-attcattc--atgtcaac
             Black flying-fox  cttgagcc-gtccgg--cgc-----aagc-cac-attcattc--atgtcaac
B D                   Megabat  cttgaacc-gtccgg--cgc-----aagc-cac-attcattc--atgtcaac
                Big brown bat  cttgaacc-gtcc-c--ggc-----aagc-cac-attcattt--atgtcaac
         David's myotis (bat)  cttgagcc-gtctgg--ggc-----aagc-cac-attcattt--atgtcaac
B D                  Microbat  cttgaacc-gtccgg--ggc-----aagc-cac-attcattt--atgtcaac
B D                  Hedgehog  gttcagcc-ggcggg--cgc-----aagc-cacaatacattc--atgtcaac
B D                     Shrew  cttgaaccgtccggg--cgc-----catc-cat-attcattc--atatcaac
              Star-nosed mole  cttgaacc-ttctgg--ctc-----aagc-cac-atccattc--atgtcaac
B D                  Elephant  cttgaagc-gtccag--cac-----aagc-cac-attcattc--atgtcaac
          Cape elephant shrew  cttgaagc-gtccgg--cac-----aatc-cac-attcactcatatgtcaac
B D                   Manatee  cttgaagc-gtccag--cgc-----aagc-cat-actcattc--atgtcaac
             Cape golden mole  cttaaagc-ggccag--cac-----aagc-ca---------c--atgtcaac
B D                    Tenrec  cttgaagt-ggc--g--cac-----aagc-cc--attcattc--atgtcaac
                     Aardvark  cttgaagc-gtccgg--cac-----aagt-cac-attcattc--atgtcaac
B D                 Armadillo  cttgaacc-gtccgg--cac-----aagc-cac-atccattc--atttcaac
B D                   Opossum  ttgcacga-ggccgg--cac-----gagc-cag-gttcattc--atgtcaac
B D           Tasmanian devil  ttgcagga-ggccgg--cac-----gagc-cag-gttcattc--atgtcaac
B D                   Wallaby  ttggagga-ggccgg--cac-----gagc-cag-attcgttc--atgtcaac
B D                  Platypus  ---------gcactt--tgc-----gagcatat-aaccgttc--atgtcagg
  D               Rock pigeon  ttttaaccttcccgc--tgc----aaagt-gaa-attcatgg--aaataaac
  D              Saker falcon  ttttaaccttcctgc--tgc----aaagt-gaa-aatcatgg--aaataaac
  D          Peregrine falcon  ttttaaccttcctgc--tgc----aaagt-gaa-aatcatgg--aaataaac
  D       Collared flycatcher  ttttaacctttctgc--tgc----aaagt-gaa-attcatgg--aaataaac
B D       Medium ground finch  ttttaacctttttgc--tgc----aaagc-gaa-attcatgg--aaataaac
B D               Zebra finch  ttttaacc-ttctgc--tgc----aaagc-gaa-aatcatgg--aaataaac
           Tibetan ground jay  ttttaacctttctgc--tgc----aaagt-gaa-attcatgg--aaataaac
B D                Budgerigar  ttttaaccttcctgc--tgc----aaagt-gaa-attcatgg--aaataaac
  D                    Parrot  ttttaaccttcctgc--tcc----aaagt-gaa-attcatgg--aaataaac
  D             Scarlet macaw  ttttaaccttcctgc--tcc----aaagt-gaa-attcatgg--aaataaac
  D              Mallard duck  ttttaaccttcctgg--cgc----aaagcgaaa-attcacgg--aaac----
B D                   Chicken  tgttaaccttccctc--cgc----aaagt-aaa-attcctgg--aagc----
B D        American alligator  ttggaa-cttcctcg--agc----aaaca-aaa-atccattg--aaatcaac
  D           Green seaturtle  tttgaatc-tcctgg--tgc----aaaca-aaa-attcattg--aaataaac
  D            Painted turtle  tttgaatc-tcctgg--tgc----aaaca-aaa-attcattg--aaataaac
  D  Chinese softshell turtle  tgtgaatc-tcctgg--tgc----aaaca-aaa-attcattg--aaataaaa
  D    Spiny softshell turtle  tgtgaatc-tcctgg--tgc----aaaca-aaa-attcattg--aaataaaa
         Pundamilia nyererei  ====================================================
         Princess of Burundi  ====================================================
      Yellowbelly pufferfish  ====================================================
                 Spotted gar  ====================================================
B D                      Fugu  ====================================================
    Mexican tetra (cavefish)  ====================================================
B D               Stickleback  ====================================================
                 Zebra mbuna  ====================================================
B D                 Zebrafish  ====================================================
       Burton's mouthbreeder  ====================================================
          Southern platyfish  ====================================================
B D                    Lizard  ====================================================
  D    White-throated sparrow  ====================================================
B D                Coelacanth  ====================================================
B D                   Dolphin  ----------------------------------------------------

Alignment block 3 of 956 in window, 146636906 - 146636907, 2 bps 
B D                     Human  a-c
B D                     Chimp  a-c
B D                   Gorilla  a-c
B D                 Orangutan  a-c
B D                    Gibbon  a-c
B D                    Rhesus  a-c
B D       Crab-eating macaque  a-c
B D                    Baboon  a-c
B D              Green monkey  a-c
B D                  Marmoset  a-c
B D           Squirrel monkey  a-c
B D                  Bushbaby  a-t
           Chinese tree shrew  a-c
B D                  Squirrel  a-c
       Lesser Egyptian jerboa  a-c
                 Prairie vole  c-a
B D           Chinese hamster  a-c
               Golden hamster  a-c
B D                     Mouse  a-c
B D                       Rat  g-c
B D            Naked mole-rat  a-c
B D                Guinea pig  a-c
                   Chinchilla  a-c
             Brush-tailed rat  a-c
B D                    Rabbit  a-g
B D                      Pika  a-g
B D                       Pig  acc
B D                    Alpaca  a-c
               Bactrian camel  a-c
                 Killer whale  a-c
             Tibetan antelope  a--
B D                       Cow  a--
B D                     Sheep  a--
                Domestic goat  a--
B D                     Horse  a-c
B D          White rhinoceros  a-c
B D                       Cat  a-c
B D                       Dog  a-c
B D                   Ferret   a-c
B D                     Panda  g-c
               Pacific walrus  a-c
                 Weddell seal  a-c
             Black flying-fox  a-c
B D                   Megabat  a-c
                Big brown bat  a-a
         David's myotis (bat)  a-a
B D                  Microbat  a-a
B D                  Hedgehog  a-c
B D                     Shrew  a-a
              Star-nosed mole  a-c
B D                  Elephant  a-t
          Cape elephant shrew  a-t
B D                   Manatee  a-c
             Cape golden mole  a-g
B D                    Tenrec  a-t
                     Aardvark  a-c
B D                 Armadillo  a-t
B D                   Opossum  a-g
B D           Tasmanian devil  a-g
B D                   Wallaby  a-g
B D                  Platypus  a-c
  D              Saker falcon  --c
  D          Peregrine falcon  --c
  D       Collared flycatcher  --c
B D       Medium ground finch  --c
B D               Zebra finch  --c
           Tibetan ground jay  --c
B D                Budgerigar  --c
  D                    Parrot  --c
  D             Scarlet macaw  --c
  D              Mallard duck  g-c
B D                   Chicken  a-g
B D        American alligator  --c
  D           Green seaturtle  --c
  D            Painted turtle  --c
  D  Chinese softshell turtle  --c
  D    Spiny softshell turtle  --c
         Pundamilia nyererei  ===
         Princess of Burundi  ===
      Yellowbelly pufferfish  ===
                 Spotted gar  ===
B D                      Fugu  ===
    Mexican tetra (cavefish)  ===
B D               Stickleback  ===
                 Zebra mbuna  ===
B D                 Zebrafish  ===
       Burton's mouthbreeder  ===
          Southern platyfish  ===
  D               Rock pigeon  NNN
B D                    Lizard  ===
  D    White-throated sparrow  ===
B D                Coelacanth  ===
B D                   Dolphin  ---

Inserts between block 3 and 4 in window
B D                 Elephant 1bp
         Cape elephant shrew 6bp
  D             Saker falcon 2bp
  D         Peregrine falcon 2bp
  D      Collared flycatcher 1bp
B D      Medium ground finch 2bp
B D              Zebra finch 2bp
          Tibetan ground jay 2bp
B D               Budgerigar 1976bp
  D                   Parrot 2bp
  D            Scarlet macaw 2bp
B D       American alligator 1bp
  D          Green seaturtle 1bp
  D           Painted turtle 1bp
  D Chinese softshell turtle 1bp
  D   Spiny softshell turtle 1bp

Alignment block 4 of 956 in window, 146636908 - 146636911, 4 bps 
B D                     Human  --tccc
B D                     Chimp  --tccc
B D                   Gorilla  --tccc
B D                 Orangutan  --tccc
B D                    Gibbon  --tccc
B D                    Rhesus  --tccc
B D       Crab-eating macaque  --tccc
B D                    Baboon  --tccc
B D              Green monkey  --tccc
B D                  Marmoset  --tccc
B D           Squirrel monkey  --tccc
B D                  Bushbaby  --ctcc
           Chinese tree shrew  --cccc
B D                  Squirrel  --cccc
       Lesser Egyptian jerboa  --ccac
                 Prairie vole  --ccct
B D           Chinese hamster  --cccc
               Golden hamster  --ctcc
B D                     Mouse  --cccc
B D                       Rat  --cccc
B D            Naked mole-rat  ----cc
B D                Guinea pig  --ctcc
                   Chinchilla  --cccc
             Brush-tailed rat  --ctcc
B D                    Rabbit  --tcct
B D                      Pika  --tctt
B D                       Pig  ---ccc
B D                    Alpaca  ---ccc
               Bactrian camel  ---ccc
                 Killer whale  ---ccc
             Tibetan antelope  ---cct
B D                       Cow  ---cct
B D                     Sheep  ---cct
                Domestic goat  ---cct
B D                     Horse  ---ccc
B D          White rhinoceros  ---ccc
B D                       Cat  ---ccc
B D                       Dog  ---ccc
B D                   Ferret   ---ccc
B D                     Panda  ---ccc
               Pacific walrus  ---ccc
                 Weddell seal  ---ccc
             Black flying-fox  ---ccc
B D                   Megabat  ---ccc
                Big brown bat  ---ccc
         David's myotis (bat)  ---ccc
B D                  Microbat  ---ccc
B D                  Hedgehog  ---ccc
B D                     Shrew  --gccc
              Star-nosed mole  ---ccc
B D                  Elephant  --cccc
          Cape elephant shrew  --cccc
B D                   Manatee  --cccc
             Cape golden mole  --cccc
B D                    Tenrec  --cccc
                     Aardvark  --cccc
B D                 Armadillo  --tccc
B D                   Opossum  --cccc
B D           Tasmanian devil  --cccc
B D                   Wallaby  --cccc
B D                  Platypus  ---ctt
  D              Saker falcon  -gcc--
  D          Peregrine falcon  -gcc--
B D       Medium ground finch  -acc--
B D               Zebra finch  -acc--
           Tibetan ground jay  -acc--
  D                    Parrot  -gcc--
  D             Scarlet macaw  -gcc--
  D              Mallard duck  -acc--
B D                   Chicken  -acc--
B D        American alligator  cact--
  D           Green seaturtle  -gtc--
  D            Painted turtle  -gtc--
  D  Chinese softshell turtle  -gtc--
  D    Spiny softshell turtle  -gtc--
         Pundamilia nyererei  ======
         Princess of Burundi  ======
      Yellowbelly pufferfish  ======
                 Spotted gar  ======
B D                      Fugu  ======
    Mexican tetra (cavefish)  ======
B D               Stickleback  ======
                 Zebra mbuna  ======
B D                 Zebrafish  ======
       Burton's mouthbreeder  ======
          Southern platyfish  ======
B D                Budgerigar  ======
  D               Rock pigeon  NNNNNN
B D                    Lizard  ======
  D       Collared flycatcher  ======
  D    White-throated sparrow  ======
B D                Coelacanth  ======
B D                   Dolphin  ------

Inserts between block 4 and 5 in window
B D                 Hedgehog 3bp
B D                  Opossum 3bp
B D          Tasmanian devil 3bp
B D                  Wallaby 3bp
  D             Saker falcon 1bp
  D         Peregrine falcon 1bp
B D      Medium ground finch 1bp
B D              Zebra finch 1bp
          Tibetan ground jay 1bp
  D                   Parrot 56bp
  D             Mallard duck 1bp
B D                  Chicken 1bp
  D          Green seaturtle 17bp
  D           Painted turtle 109bp
  D Chinese softshell turtle 16bp
  D   Spiny softshell turtle 16bp

Alignment block 5 of 956 in window, 146636912 - 146636917, 6 bps 
B D                     Human  --ct---------t-tcc
B D                     Chimp  --ct---------t-tcc
B D                   Gorilla  --ct---------t-tcc
B D                 Orangutan  --ct---------c-tcc
B D                    Gibbon  --ct---------c-tcc
B D                    Rhesus  --ct---------c-tcc
B D       Crab-eating macaque  --ct---------c-tcc
B D                    Baboon  --ct---------c-tcc
B D              Green monkey  --ct---------c-tcc
B D                  Marmoset  --ct---------c-tcc
B D           Squirrel monkey  --ct---------c-tcc
B D                  Bushbaby  --ct---------c-tcc
           Chinese tree shrew  --cg---------c-ccc
B D                  Squirrel  --ct---------c-tcc
       Lesser Egyptian jerboa  --cccccccctcgc-tcc
                 Prairie vole  --ct---------c-tcc
B D           Chinese hamster  --ct---------c-tcc
               Golden hamster  --c----------c-tcc
B D                     Mouse  --ct---------c-tcc
B D                       Rat  --ct---------c-ttt
B D            Naked mole-rat  --ct---------c-tcc
B D                Guinea pig  --ct---------c-tcc
                   Chinchilla  --ct---------c-tcc
             Brush-tailed rat  --ct---------c-tct
B D                    Rabbit  --ct---------c-tc-
B D                      Pika  --ct---------c-tca
B D                       Pig  --ct---------c-tcc
B D                    Alpaca  --ct---------c-tcc
               Bactrian camel  --ct---------c-tcc
                 Killer whale  --ct---------c-tcc
             Tibetan antelope  --ct---------c-tgc
B D                       Cow  --ct---------c-tgc
B D                     Sheep  --ct---------c-tgc
                Domestic goat  --ct---------cttgc
B D                     Horse  --ct---------c-tcc
B D          White rhinoceros  --ct---------c-tcc
B D                       Cat  --ct---------g-tcc
B D                       Dog  --tt---------g-tcc
B D                   Ferret   --ct---------g-ccc
B D                     Panda  --ct---------g-tcc
               Pacific walrus  --tt---------g-tcc
                 Weddell seal  --ct---------g-tcc
             Black flying-fox  --ct---------c-tcc
B D                   Megabat  --ct---------c-tcc
                Big brown bat  --ct---------c-tcc
         David's myotis (bat)  --ct---------c-tcc
B D                  Microbat  --ct---------c-tcc
B D                  Hedgehog  --ct---------c-ccc
B D                     Shrew  --ct---------t-tct
              Star-nosed mole  --ct---------c-ttc
B D                  Elephant  --ct---------c-ttc
          Cape elephant shrew  --cc---------c-ttc
B D                   Manatee  --ct---------t-ttc
             Cape golden mole  --ct---------c-ttc
B D                    Tenrec  --ct---------c-ttc
                     Aardvark  --tt---------c-ttc
B D                 Armadillo  --c----------c-tcc
B D                   Opossum  --cc---------c-agc
B D           Tasmanian devil  --cc---------c-tgc
B D                   Wallaby  --cc---------c-tgc
B D                  Platypus  --ct---------c-tcc
  D              Saker falcon  --ct--------------
  D          Peregrine falcon  --ct--------------
B D       Medium ground finch  --cc--------------
B D               Zebra finch  --cc--------------
           Tibetan ground jay  --cc--------------
  D              Mallard duck  ggcc--------------
B D                   Chicken  ggcc--------------
B D        American alligator  --cc--------------
  D           Green seaturtle  --ct--------------
  D  Chinese softshell turtle  tttt--------------
  D    Spiny softshell turtle  tttt--------------
         Pundamilia nyererei  ==================
         Princess of Burundi  ==================
      Yellowbelly pufferfish  ==================
                 Spotted gar  ==================
B D                      Fugu  ==================
    Mexican tetra (cavefish)  ==================
B D               Stickleback  ==================
                 Zebra mbuna  ==================
B D                 Zebrafish  ==================
       Burton's mouthbreeder  ==================
          Southern platyfish  ==================
  D                    Parrot  ==================
B D                Budgerigar  ==================
  D               Rock pigeon  NNNNNNNNNNNNNNNNNN
B D                    Lizard  ==================
  D       Collared flycatcher  ==================
  D    White-throated sparrow  ==================
B D                Coelacanth  ==================
  D            Painted turtle  ==================
B D                   Dolphin  ------------------

Inserts between block 5 and 6 in window
  D             Saker falcon 6bp
  D         Peregrine falcon 6bp
B D      Medium ground finch 49bp
B D              Zebra finch 7bp
          Tibetan ground jay 463bp
  D             Mallard duck 12bp
B D                  Chicken 11bp
B D       American alligator 4bp
  D          Green seaturtle 2bp
  D Chinese softshell turtle 2bp
  D   Spiny softshell turtle 2bp

Alignment block 6 of 956 in window, 146636918 - 146636920, 3 bps 
B D                     Human  ---c---ta
B D                     Chimp  ---c---tg
B D                   Gorilla  ---c---tg
B D                 Orangutan  ---c---tg
B D                    Gibbon  ---c---tg
B D                    Rhesus  ---c---tg
B D       Crab-eating macaque  ---c---tg
B D                    Baboon  ---c---tg
B D              Green monkey  ---c---tg
B D                  Marmoset  ---t---tg
B D           Squirrel monkey  ---t---tg
B D                  Bushbaby  ---c---tg
           Chinese tree shrew  ---c---ag
B D                  Squirrel  ---c---ag
       Lesser Egyptian jerboa  ---c---ag
                 Prairie vole  ---g---aa
B D           Chinese hamster  ---g---ag
               Golden hamster  ---g---ag
B D                     Mouse  ---g---ag
B D                       Rat  ---g---ag
B D            Naked mole-rat  ---a----g
B D                Guinea pig  ---a----c
                   Chinchilla  ---g----g
             Brush-tailed rat  ---gcgcct
B D                      Pika  ---c---ag
B D                       Pig  ---a----g
B D                    Alpaca  ---a----g
               Bactrian camel  ---a----g
                 Killer whale  ---a----g
             Tibetan antelope  ---a----g
B D                       Cow  ---a----g
B D                     Sheep  ---a----g
                Domestic goat  ---a----g
B D                     Horse  ---a----g
B D          White rhinoceros  ---a----g
B D                       Cat  ---a----g
B D                       Dog  ---a----g
B D                   Ferret   ---a----g
B D                     Panda  ---a----a
               Pacific walrus  ---a----g
                 Weddell seal  ---a----g
             Black flying-fox  ---a----g
B D                   Megabat  ---a----g
                Big brown bat  ---a----g
         David's myotis (bat)  ---a----g
B D                  Microbat  ---a----g
B D                  Hedgehog  ---a----g
B D                     Shrew  ---a----g
              Star-nosed mole  ---a----g
B D                  Elephant  ---c---ag
          Cape elephant shrew  ---c---ag
B D                   Manatee  ---c---aa
             Cape golden mole  ---c---ag
B D                    Tenrec  ---c---ag
                     Aardvark  ---c----g
B D                 Armadillo  ---c---ag
B D                   Opossum  ---a----g
B D           Tasmanian devil  ---c---gg
B D                   Wallaby  ---c----g
B D                  Platypus  ---t---tc
B D        American alligator  cca------
  D           Green seaturtle  tt-------
  D  Chinese softshell turtle  tt-------
  D    Spiny softshell turtle  tt-------
B D                    Rabbit  ---------
         Pundamilia nyererei  =========
         Princess of Burundi  =========
      Yellowbelly pufferfish  =========
                 Spotted gar  =========
B D                      Fugu  =========
    Mexican tetra (cavefish)  =========
B D               Stickleback  =========
                 Zebra mbuna  =========
B D                 Zebrafish  =========
       Burton's mouthbreeder  =========
          Southern platyfish  =========
B D                   Chicken  =========
  D              Mallard duck  =========
  D                    Parrot  =========
B D                Budgerigar  =========
B D               Zebra finch  =========
  D          Peregrine falcon  =========
  D              Saker falcon  =========
  D               Rock pigeon  NNNNNNNNN
B D       Medium ground finch  =========
B D                    Lizard  =========
  D       Collared flycatcher  =========
          Tibetan ground jay  =========
  D    White-throated sparrow  =========
B D                Coelacanth  =========
  D            Painted turtle  =========
B D                   Dolphin  ---------

Inserts between block 6 and 7 in window
B D       American alligator 1bp
  D   Spiny softshell turtle 3bp

Alignment block 7 of 956 in window, 146636921 - 146636940, 20 bps 
B D                     Human  ----------------ccccatgtcca--ggtttc-gct
B D                     Chimp  ----------------ccccatgtcca--ggtttc-gct
B D                   Gorilla  ----------------ccccatgtcca--ggtttc-gct
B D                 Orangutan  ----------------ccccacgtcca--ggtttc-tct
B D                    Gibbon  ----------------ccccatgtcca--ggtttc-tct
B D                    Rhesus  ----------------ccccatgtcca--ggttta-tct
B D       Crab-eating macaque  ----------------ccccatgtcca--ggttta-tct
B D                    Baboon  ----------------ccccatgtcca--ggttta-tct
B D              Green monkey  ----------------ccccatgtcca--cgttta-tct
B D                  Marmoset  ----------------tcccacgtcca--ggtttc-tct
B D           Squirrel monkey  ----------------tcccatgtcca--ggtttc-tct
B D                  Bushbaby  ----------------tcccatgtcca--gacttc-ccc
           Chinese tree shrew  ----------------tcccatgtcca--ggcttc-tcc
B D                  Squirrel  ----------------tctagcactca--ggcttc-tgc
       Lesser Egyptian jerboa  ----------------tcccatgtcaa--gacttc-tct
                 Prairie vole  ----------------tcccgtgccca--ggcttc-ttc
B D           Chinese hamster  ----------------tcccgtggcca--ggcttc-tcc
               Golden hamster  ----------------ttccgtggcca--ggtttc-tcc
B D                     Mouse  ----------------tcct-tgccca--ggcttc-tta
B D                       Rat  ----------------tcccgtgccca--ggcttc-tca
B D            Naked mole-rat  ----------------tcccgtgccca--gacttc-tcc
B D                Guinea pig  ----------------tccagtgccca--gacttc-tct
                   Chinchilla  ----------------tcccgtgtcca--gtcttc-tcc
             Brush-tailed rat  ----------------tcccatgctcg--gacttc-tcc
B D                    Rabbit  ------------------------cca--ggcttcttct
B D                      Pika  ----------------ccctctgtcca--ggctttttct
B D                       Pig  ----------------tcccgcgtcca--ggcttc-tcc
B D                    Alpaca  ----------------tcccttgtcca--ggattc-tcc
               Bactrian camel  ----------------tcccttgttca--ggattc-tcc
                 Killer whale  ----------------tcccgagtcca--ggcttc-tcc
             Tibetan antelope  ----------------tcccgtgtcca--gccttc-cct
B D                       Cow  ----------------tcccgtgtcca--gccttc-cct
B D                     Sheep  ----------------tcccgtgtcca--gccttc-cct
                Domestic goat  ----------------tctcgtgtcca--gccttc-cct
B D                     Horse  ----------------acccgtgtcca--ggcttc-tcc
B D          White rhinoceros  ----------------acccgtgtcca--agcttc-tcc
B D                       Cat  ----------------tctcgtgccta--gactta-tct
B D                       Dog  ----------------tctcgtgtcta--gacttc-tct
B D                   Ferret   ----------------tctcatgtcta--gacttc-tcc
B D                     Panda  ----------------tctcgtgtcta--gacttc-tcc
               Pacific walrus  ----------------tctcgtgtcta--gacttc-tcc
                 Weddell seal  ----------------tctcgtgtcta--gacttc-tcc
             Black flying-fox  ----------------cctcgcgtcca--ggcttc-tcc
B D                   Megabat  ----------------cctcgcgtcca--ggcttc-tcc
                Big brown bat  ----------------tcccgtgtcca--ggcccc-t-c
         David's myotis (bat)  ----------------tcgcttgtcca--ggcccc-t-c
B D                  Microbat  ----------------tctcttgtcca--ggcccc-t-c
B D                  Hedgehog  ----------------cctggcgccca--agctcc-t--
B D                     Shrew  ----------------ctccttgt---------------
              Star-nosed mole  ----------------tcccgtgtcca--ggattc-tca
B D                  Elephant  ----------------tctcgtgccca--gacttc-ttc
          Cape elephant shrew  -----------------cccgtgtcca--gacgtc-ttc
B D                   Manatee  ----------------ccccgtgtcca--gacttc-ttc
             Cape golden mole  ----------------cttcgtgtcca--gacttc-ttc
B D                    Tenrec  ----------------tctcctgtcca--ggcttc-ttc
                     Aardvark  ----------------ccccgtatcca--gatttc-tcc
B D                 Armadillo  ----------------ctccgtatcta--ggcttc-tca
B D                   Opossum  ----------------tcct---ccca--gcgcag-cct
B D           Tasmanian devil  ----------------ggctc--ccca--gcgcag-ccc
B D                   Wallaby  ----------------tcctc--ccca--gcatag-cct
B D                  Platypus  ----------------cattgcctccatcgattcc-ccc
  D       Collared flycatcher  ----------------gacc-------------------
  D              Mallard duck  cccgact--------tcccc-------------------
B D                   Chicken  cctcgctcctttccctcccc-------------------
B D        American alligator  ----------------cccc-------------------
  D           Green seaturtle  -------------atttatt-------------------
  D  Chinese softshell turtle  -------------atttatt-------------------
  D    Spiny softshell turtle  -------------atttatt-------------------
         Pundamilia nyererei  =======================================
         Princess of Burundi  =======================================
      Yellowbelly pufferfish  =======================================
                 Spotted gar  =======================================
B D                      Fugu  =======================================
    Mexican tetra (cavefish)  =======================================
B D               Stickleback  =======================================
                 Zebra mbuna  =======================================
B D                 Zebrafish  =======================================
       Burton's mouthbreeder  =======================================
          Southern platyfish  =======================================
  D                    Parrot  =======================================
B D                Budgerigar  =======================================
B D               Zebra finch  =======================================
  D          Peregrine falcon  =======================================
  D              Saker falcon  =======================================
  D               Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D       Medium ground finch  =======================================
B D                    Lizard  =======================================
          Tibetan ground jay  =======================================
  D    White-throated sparrow  =======================================
B D                Coelacanth  =======================================
  D            Painted turtle  =======================================
B D                   Dolphin  ---------------------------------------

Inserts between block 7 and 8 in window
  D      Collared flycatcher 10bp
  D             Mallard duck 6152bp
B D                  Chicken 19bp
B D       American alligator 25bp
  D          Green seaturtle 13bp
  D Chinese softshell turtle 13bp
  D   Spiny softshell turtle 13bp

Alignment block 8 of 956 in window, 146636941 - 146636948, 8 bps 
B D                     Human  gagctc-ac
B D                     Chimp  gagctc-at
B D                   Gorilla  gagctc-ac
B D                 Orangutan  gagctc-ac
B D                    Gibbon  gagcgc-ac
B D                    Rhesus  gagctc-ac
B D       Crab-eating macaque  gagctc-ac
B D                    Baboon  gagctc-ac
B D              Green monkey  gagctc-ac
B D                  Marmoset  gagctc-ac
B D           Squirrel monkey  gagctc-ac
B D                  Bushbaby  aagctc-cc
           Chinese tree shrew  gaactc-ac
B D                  Squirrel  aggctc-ac
       Lesser Egyptian jerboa  gggctt-tc
                 Prairie vole  aggctc-tc
B D           Chinese hamster  aggccc-tt
               Golden hamster  gggctc-t-
B D                     Mouse  gggctc-tc
B D                       Rat  gggctc-tc
B D            Naked mole-rat  aagctc-cg
B D                Guinea pig  gacctc-at
                   Chinchilla  aacctc-at
             Brush-tailed rat  aacctc-gt
B D                    Rabbit  gggttc-ac
B D                      Pika  ggcttc-ac
B D                       Pig  gggctc-ct
B D                    Alpaca  gagctc-ct
               Bactrian camel  gagctc-ct
                 Killer whale  gggctt-ct
             Tibetan antelope  gggctt-ct
B D                       Cow  gggctt-ct
B D                     Sheep  gggctg-ct
                Domestic goat  gggctt-ca
B D                     Horse  gggctc-ct
B D          White rhinoceros  tggctc-at
B D                       Cat  ggtctc-at
B D                       Dog  ggtctc-at
B D                   Ferret   ggtctc-at
B D                     Panda  ggtctc-at
               Pacific walrus  ggtctc-at
                 Weddell seal  ggtctc-at
             Black flying-fox  gg-ctc-at
B D                   Megabat  gg-ctc-at
                Big brown bat  gg-ctc-a-
         David's myotis (bat)  gg-ctc-a-
B D                  Microbat  gg-ctc-a-
B D                  Hedgehog  ----gc-ag
B D                     Shrew  ----tc-ct
              Star-nosed mole  gagctc-at
B D                  Elephant  ggaatc-ac
          Cape elephant shrew  gggctc-ac
B D                   Manatee  gggctc-ac
             Cape golden mole  atactc-ac
B D                    Tenrec  aggctc-ac
                     Aardvark  aagctc-ac
B D                 Armadillo  gaactc-ac
B D                   Opossum  gcacgc-ca
B D           Tasmanian devil  gcgctcgca
B D                   Wallaby  gcacgcgca
B D                  Platypus  gacttc-cc
  D           Green seaturtle  aa-------
  D  Chinese softshell turtle  aa-------
  D    Spiny softshell turtle  aa-------
         Pundamilia nyererei  =========
         Princess of Burundi  =========
      Yellowbelly pufferfish  =========
                 Spotted gar  =========
B D                      Fugu  =========
    Mexican tetra (cavefish)  =========
B D               Stickleback  =========
                 Zebra mbuna  =========
B D                 Zebrafish  =========
       Burton's mouthbreeder  =========
          Southern platyfish  =========
B D        American alligator  =========
B D                   Chicken  =========
  D              Mallard duck  =========
  D                    Parrot  =========
B D                Budgerigar  =========
B D               Zebra finch  =========
  D          Peregrine falcon  =========
  D              Saker falcon  =========
  D               Rock pigeon  NNNNNNNNN
B D       Medium ground finch  =========
B D                    Lizard  =========
  D       Collared flycatcher  =========
          Tibetan ground jay  =========
  D    White-throated sparrow  =========
B D                Coelacanth  =========
  D            Painted turtle  =========
B D                   Dolphin  ---------

Inserts between block 8 and 9 in window
B D                 Elephant 3bp
B D                  Manatee 3bp

Alignment block 9 of 956 in window, 146636949 - 146636949, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Marmoset  a
B D           Squirrel monkey  a
B D                  Bushbaby  c
           Chinese tree shrew  a
B D                  Squirrel  a
       Lesser Egyptian jerboa  a
                 Prairie vole  a
B D           Chinese hamster  a
B D                     Mouse  a
B D                       Rat  a
B D            Naked mole-rat  a
B D                Guinea pig  a
                   Chinchilla  a
             Brush-tailed rat  g
B D                    Rabbit  a
B D                      Pika  a
B D                       Pig  g
B D                    Alpaca  g
               Bactrian camel  g
                 Killer whale  g
             Tibetan antelope  t
B D                       Cow  t
B D                     Sheep  t
                Domestic goat  t
B D                     Horse  a
B D          White rhinoceros  g
B D                       Cat  g
B D                       Dog  g
B D                   Ferret   g
B D                     Panda  g
               Pacific walrus  g
                 Weddell seal  g
             Black flying-fox  g
B D                   Megabat  g
                Big brown bat  g
         David's myotis (bat)  g
B D                  Microbat  g
B D                  Hedgehog  g
B D                     Shrew  t
              Star-nosed mole  g
B D                  Elephant  c
          Cape elephant shrew  a
B D                   Manatee  c
             Cape golden mole  a
B D                    Tenrec  a
                     Aardvark  a
B D                 Armadillo  a
B D                   Opossum  g
B D           Tasmanian devil  g
B D                   Wallaby  g
  D           Green seaturtle  g
  D  Chinese softshell turtle  a
  D    Spiny softshell turtle  a
              Golden hamster  -
         Pundamilia nyererei  =
         Princess of Burundi  =
      Yellowbelly pufferfish  =
                 Spotted gar  =
B D                      Fugu  =
    Mexican tetra (cavefish)  =
B D               Stickleback  =
                 Zebra mbuna  =
B D                 Zebrafish  =
       Burton's mouthbreeder  =
          Southern platyfish  =
B D        American alligator  =
B D                   Chicken  =
  D              Mallard duck  =
  D                    Parrot  =
B D                Budgerigar  =
B D               Zebra finch  =
  D          Peregrine falcon  =
  D              Saker falcon  =
  D               Rock pigeon  N
B D                  Platypus  =
B D       Medium ground finch  =
B D                    Lizard  =
  D       Collared flycatcher  =
          Tibetan ground jay  =
  D    White-throated sparrow  =
B D                Coelacanth  =
  D            Painted turtle  =
B D                   Dolphin  -

Alignment block 10 of 956 in window, 146636950 - 146636972, 23 bps 
B D                     Human  cccggcaacactgc-tgct--aggag
B D                     Chimp  cccggcaacactgc-tgct--aggag
B D                   Gorilla  cccggcaacactgc-tgct--aggag
B D                 Orangutan  cccgggaacactgc-tgct--aggag
B D                    Gibbon  cccgggaacactgc-tgct--aggag
B D                    Rhesus  cccgggaacactgc-tgct--aggaa
B D       Crab-eating macaque  cccgggaacactgc-tgct--aggaa
B D                    Baboon  cccgggaacactgc-tgct--aggaa
B D              Green monkey  cccgggaacactgc-tgct--aggaa
B D                  Marmoset  ttcgggaacactgc-tgct--aggaa
B D           Squirrel monkey  ctcgggaacactgc-tgct--aggaa
B D                  Bushbaby  ctcggaaacactgt-tcgt--tggaa
           Chinese tree shrew  cgcgggatcac----tcgt--aggaa
B D                  Squirrel  ctcagggacactgc-ttct--aggaa
       Lesser Egyptian jerboa  g--gaggggactcc-tgct--aggaa
                 Prairie vole  gtcgagaacactgc-tcgc--aggaa
B D           Chinese hamster  gtcgagaacactgc-tcgc--agaaa
               Golden hamster  ---gagaacactgc-tcgc--agaaa
B D                     Mouse  gtggagaacatggc-tcgt--aggaa
B D                       Rat  gtggagaacaaggc-tcgt--aggaa
B D            Naked mole-rat  ctcgggaacactgc-ttgt--aggaa
B D                Guinea pig  ctcgggaactctgc-t-----aggaa
                   Chinchilla  cccggaaacgctgc-ttgc--aggaa
             Brush-tailed rat  ctcgggaa--ctgc-ttac--agaaa
B D                    Rabbit  tttgggaacattgc-tcgt--agata
B D                      Pika  gttgggaatattgc-tcgt--agata
B D                       Pig  ctccggaagattgc-tggt--aggaa
B D                    Alpaca  ctccggaacactgc-tggt--aggaa
               Bactrian camel  ctccggaacactgc-tggt--aggaa
                 Killer whale  ctcaggaacacggc-tggt--aggaa
             Tibetan antelope  ctcgggaacactgc-tagt--aggaa
B D                       Cow  ctcgggaacattgc-tagc--aggaa
B D                     Sheep  ctcgggaacactgc-tagt--aggaa
                Domestic goat  ctcgggaacactgc-tagt--aggaa
B D                     Horse  ctcaggaacactgc-tggt--aggaa
B D          White rhinoceros  ctcgggaacactgc-tagt--aggaa
B D                       Cat  ctcaggaacagtgc-tggt--aggaa
B D                       Dog  ctcaggaacagtac-tggt--gggaa
B D                   Ferret   ctcgggagcagtgc-tggt--aggaa
B D                     Panda  ctcggtaacagtgc-tggt--aggaa
               Pacific walrus  ctcgggaacagtgc-tggt--aggaa
                 Weddell seal  ctcgggaacagtgc-tgat--aggaa
             Black flying-fox  ctcaggaacactgc-tggt--aggaa
B D                   Megabat  ctcaggaacactgc-tggt--aggaa
                Big brown bat  ctactgaa----gg-tagg--aggaa
         David's myotis (bat)  ctactgaa----gg-tagg--aggaa
B D                  Microbat  ctactgaa----gg-tagg--aggaa
B D                  Hedgehog  ctcgggaacgcggc-gggt--aggaa
B D                     Shrew  ctggagagcactgc-tggc--cgcaa
              Star-nosed mole  ctcggaaacactgc-tggt--aggaa
B D                  Elephant  ct-cggggtacggc-tcgt--aggaa
          Cape elephant shrew  ct-ggggataccac-tcac--aggaa
B D                   Manatee  ctccaggatactgc-tcgt--aggaa
             Cape golden mole  ttcggggatactgc-tcat--aggat
B D                    Tenrec  ctcgggggtactgc-gcgt--agga-
                     Aardvark  ctcggggataccgc-tcgg--aggaa
B D                 Armadillo  ctctgggacactac-tcca--aggaa
B D                   Opossum  cccctccagacagc-cagc--agaat
B D           Tasmanian devil  ccccgccagacagc-cggc--acagt
B D                   Wallaby  ccccaccagacagc-cagc--agaat
B D                  Platypus  cccggtgaagtttc-tttc--agga-
  D              Saker falcon  -------aagctga-cttt--ccctg
  D          Peregrine falcon  -------aagctga-cttt--ccctg
  D       Collared flycatcher  -------aaactga-tttt--cccca
B D               Zebra finch  -------aaactga-cttt--ccccg
B D                   Chicken  -------acgcggagccct--gcggg
B D        American alligator  -------aagtagt-ttgtaaccagg
  D           Green seaturtle  ---catgaagttgg-cagt--aca-g
  D  Chinese softshell turtle  ---cgtgaagttgg-cagt--aca-g
  D    Spiny softshell turtle  ---cttgaagttgg-cagt--aca-g
         Pundamilia nyererei  ==========================
         Princess of Burundi  ==========================
      Yellowbelly pufferfish  ==========================
                 Spotted gar  ==========================
B D                      Fugu  ==========================
    Mexican tetra (cavefish)  ==========================
B D               Stickleback  ==========================
                 Zebra mbuna  ==========================
B D                 Zebrafish  ==========================
       Burton's mouthbreeder  ==========================
          Southern platyfish  ==========================
  D              Mallard duck  ==========================
  D                    Parrot  ==========================
B D                Budgerigar  ==========================
  D               Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNN
B D       Medium ground finch  ==========================
B D                    Lizard  ==========================
          Tibetan ground jay  ==========================
  D    White-throated sparrow  ==========================
B D                Coelacanth  ==========================
  D            Painted turtle  ==========================
B D                   Dolphin  --------------------------

Inserts between block 10 and 11 in window
  D             Saker falcon 6bp
  D         Peregrine falcon 6bp
  D      Collared flycatcher 6bp
B D              Zebra finch 31bp
B D                  Chicken 1bp
B D       American alligator 2bp
  D          Green seaturtle 16bp
  D Chinese softshell turtle 16bp
  D   Spiny softshell turtle 16bp

Alignment block 11 of 956 in window, 146636973 - 146636983, 11 bps 
B D                     Human  t-tccctt----c---ggc
B D                     Chimp  t-cccctt----c---ggc
B D                   Gorilla  t-cccctt----c---ggc
B D                 Orangutan  t-cccctt----c---ggc
B D                    Gibbon  t-cccctt----c---ggc
B D                    Rhesus  t-cccctt----c---ggc
B D       Crab-eating macaque  t-cccctt----c---ggc
B D                    Baboon  t-cccctt----c---ggc
B D              Green monkey  t-cccctt----c---ggc
B D                  Marmoset  t-cccctt----c---ggc
B D           Squirrel monkey  t-cccctt----c---ggc
B D                  Bushbaby  t-cccctt----c---ggc
           Chinese tree shrew  t-ccccgt----c---ggc
B D                  Squirrel  t-cccctt----t---ggc
       Lesser Egyptian jerboa  t-cccctc----t---agg
                 Prairie vole  t-tccctt----t---ggc
B D           Chinese hamster  t-cccctt----t---gac
               Golden hamster  t-cccatt----t---ggc
B D                     Mouse  t-cccctt----t---ggc
B D                       Rat  t-cccctt----t---ggc
B D            Naked mole-rat  t-gccctg----t---ggc
B D                Guinea pig  t-gcctct----t---ggc
                   Chinchilla  t-gccccc----t---ggc
             Brush-tailed rat  t-gccctt----t---gac
B D                    Rabbit  t-cccctt----g---ggc
B D                      Pika  c-cccctt----g---ggc
B D                       Pig  t-cccctt----c---ggc
B D                    Alpaca  tcccccct----t---ggc
               Bactrian camel  tcccccct----t---ggc
                 Killer whale  t-tccctt----c---ggc
             Tibetan antelope  t-tccctt----c---ggc
B D                       Cow  t-tccctt----c---ggc
B D                     Sheep  t-tccctt----c---ggc
                Domestic goat  t-tccctt----c---ggc
B D                     Horse  t-cccctt----c---ggc
B D          White rhinoceros  c-cccctt----c---ggc
B D                       Cat  t-cccctt----c---agc
B D                       Dog  t-cccctt----c---agt
B D                   Ferret   t-ctcctt----c---tgc
B D                     Panda  t-cccctt----c---agc
               Pacific walrus  t-cccctt----c---agc
                 Weddell seal  t-cccctt----c---agc
             Black flying-fox  t-cccctt----c---ggc
B D                   Megabat  t-cccctt----c---ggc
                Big brown bat  t-cccctt----t---ggc
         David's myotis (bat)  t-cccctt----t---ggc
B D                  Microbat  t-cctctt----t---ggc
B D                  Hedgehog  c-cccctt----c---ggc
B D                     Shrew  t-tccctt----cagtggc
              Star-nosed mole  g-ccccct----c---ggc
B D                  Elephant  t-cccctt----c---ctc
          Cape elephant shrew  t-cccctt----c---agc
B D                   Manatee  t-cccctt----c---agc
             Cape golden mole  t-cccttt----c---agc
B D                    Tenrec  a-cccctt----c---agc
                     Aardvark  t-cccttc----c---agc
B D                 Armadillo  t-cccctt----c---agc
B D                   Opossum  t-tccctt--------ggc
B D           Tasmanian devil  t-tccctt--------ggc
B D                   Wallaby  t-ttcctt--------ggc
  D              Saker falcon  t-ttctct-----------
  D          Peregrine falcon  t-ttctct-----------
  D       Collared flycatcher  t-ttctct-----------
B D       Medium ground finch  t-ttcttt-----------
B D               Zebra finch  t-tccttt-----------
  D                    Parrot  t-ttccct-----------
B D                   Chicken  c-ccccctcggc-------
B D        American alligator  t-tt---------------
  D           Green seaturtle  t-ttttaa-----------
  D  Chinese softshell turtle  g-tttaaa-----------
  D    Spiny softshell turtle  t-ttttaa-----------
         Pundamilia nyererei  ===================
         Princess of Burundi  ===================
      Yellowbelly pufferfish  ===================
                 Spotted gar  ===================
B D                      Fugu  ===================
    Mexican tetra (cavefish)  ===================
B D               Stickleback  ===================
                 Zebra mbuna  ===================
B D                 Zebrafish  ===================
       Burton's mouthbreeder  ===================
          Southern platyfish  ===================
  D              Mallard duck  ===================
B D                Budgerigar  ===================
  D               Rock pigeon  NNNNNNNNNNNNNNNNNNN
B D                  Platypus  -------------------
B D                    Lizard  ===================
          Tibetan ground jay  ===================
  D    White-throated sparrow  ===================
B D                Coelacanth  ===================
  D            Painted turtle  ===================
B D                   Dolphin  -------------------

Inserts between block 11 and 12 in window
  D          Green seaturtle 1bp
  D Chinese softshell turtle 1bp
  D   Spiny softshell turtle 1bp

Alignment block 12 of 956 in window, 146636984 - 146636984, 1 bps 
B D                     Human  t
B D                     Chimp  t
B D                   Gorilla  t
B D                 Orangutan  t
B D                    Gibbon  t
B D                    Rhesus  t
B D       Crab-eating macaque  t
B D                    Baboon  t
B D              Green monkey  t
B D                  Marmoset  t
B D           Squirrel monkey  t
B D                  Bushbaby  t
           Chinese tree shrew  c
B D                  Squirrel  t
       Lesser Egyptian jerboa  t
                 Prairie vole  t
B D           Chinese hamster  a
               Golden hamster  t
B D                     Mouse  t
B D                       Rat  t
B D            Naked mole-rat  t
B D                Guinea pig  t
                   Chinchilla  t
             Brush-tailed rat  t
B D                    Rabbit  t
B D                      Pika  c
B D                       Pig  t
B D                    Alpaca  t
               Bactrian camel  t
                 Killer whale  t
             Tibetan antelope  t
B D                       Cow  t
B D                     Sheep  t
                Domestic goat  t
B D                     Horse  t
B D          White rhinoceros  t
B D                       Cat  c
B D                       Dog  t
B D                   Ferret   t
B D                     Panda  t
               Pacific walrus  c
                 Weddell seal  c
             Black flying-fox  t
B D                   Megabat  t
                Big brown bat  t
         David's myotis (bat)  t
B D                  Microbat  t
B D                  Hedgehog  t
B D                     Shrew  t
              Star-nosed mole  t
B D                  Elephant  t
          Cape elephant shrew  t
B D                   Manatee  t
             Cape golden mole  t
B D                    Tenrec  t
                     Aardvark  t
B D                 Armadillo  t
B D                   Opossum  t
B D           Tasmanian devil  t
B D                   Wallaby  t
  D              Saker falcon  c
  D          Peregrine falcon  c
  D       Collared flycatcher  c
B D       Medium ground finch  t
B D               Zebra finch  t
  D                    Parrot  c
  D           Green seaturtle  c
  D  Chinese softshell turtle  c
  D    Spiny softshell turtle  a
         Pundamilia nyererei  =
         Princess of Burundi  =
      Yellowbelly pufferfish  =
                 Spotted gar  =
B D                      Fugu  =
    Mexican tetra (cavefish)  =
B D               Stickleback  =
                 Zebra mbuna  =
B D                 Zebrafish  =
       Burton's mouthbreeder  =
          Southern platyfish  =
B D        American alligator  -
B D                   Chicken  =
  D              Mallard duck  =
B D                Budgerigar  =
  D               Rock pigeon  N
B D                  Platypus  -
B D                    Lizard  =
          Tibetan ground jay  =
  D    White-throated sparrow  =
B D                Coelacanth  =
  D            Painted turtle  =
B D                   Dolphin  -

Inserts between block 12 and 13 in window
B D                  Opossum 1bp
B D          Tasmanian devil 1bp
B D                  Wallaby 1bp

Alignment block 13 of 956 in window, 146636985 - 146637004, 20 bps 
B D                     Human  actat---tta-ttat------------------------------------------------------
B D                     Chimp  actat---tta-ttat------------------------------------------------------
B D                   Gorilla  actat---tta-ttat------------------------------------------------------
B D                 Orangutan  actat---tta-ttat------------------------------------------------------
B D                    Gibbon  actat---tta-ttat------------------------------------------------------
B D                    Rhesus  actat---tta-ttat------------------------------------------------------
B D       Crab-eating macaque  actat---tta-ttat------------------------------------------------------
B D                    Baboon  actat---tta-ttat------------------------------------------------------
B D              Green monkey  actat---tta-ttat------------------------------------------------------
B D                  Marmoset  actat---tta-ttat------------------------------------------------------
B D           Squirrel monkey  actat-------ttat------------------------------------------------------
B D                  Bushbaby  gctat---tta-ttat------------------------------------------------------
           Chinese tree shrew  actat---ctt-ttat------------------------------------------------------
B D                  Squirrel  g-tat---tta-ttat------------------------------------------------------
       Lesser Egyptian jerboa  accat---tta-ttat------------------------------------------------------
                 Prairie vole  actgt---tta-ttat------------------------------------------------------
B D           Chinese hamster  actgt---tta-ttat------------------------------------------------------
               Golden hamster  actgt---tta-ttat------------------------------------------------------
B D                     Mouse  actgt---tta-ttat------------------------------------------------------
B D                       Rat  actgt---tta-ttat------------------------------------------------------
B D            Naked mole-rat  actat---cca-ttat------------------------------------------------------
B D                Guinea pig  ---at---tta-ttat------------------------------------------------------
                   Chinchilla  actat---tta-ctat------------------------------------------------------
             Brush-tailed rat  acgat---tta-ttat------------------------------------------------------
B D                    Rabbit  attat---tta-ttat------------------------------------------------------
B D                      Pika  actat---tta-ttat------------------------------------------------------
B D                       Pig  actat---tta-ttat------------------------------------------------------
B D                    Alpaca  actat---tta-ttat------------------------------------------------------
               Bactrian camel  actat---tta-ttat------------------------------------------------------
B D                   Dolphin  actac---tta-tcctcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
                 Killer whale  gctat---tta-ttat------------------------------------------------------
             Tibetan antelope  actat---tta-ttct------------------------------------------------------
B D                       Cow  actat---tta-ttct------------------------------------------------------
B D                     Sheep  actat---tta-ttct------------------------------------------------------
                Domestic goat  actat---tta-ttct------------------------------------------------------
B D                     Horse  actat---ata-ttat------------------------------------------------------
B D          White rhinoceros  actat---tca-ttat------------------------------------------------------
B D                       Cat  actat---tta-gtat------------------------------------------------------
B D                       Dog  actat---tta-ttat------------------------------------------------------
B D                   Ferret   actat-------ttat------------------------------------------------------
B D                     Panda  actat---tta-ttat------------------------------------------------------
               Pacific walrus  actat---tta-ttat------------------------------------------------------
                 Weddell seal  actat---tta-ttat------------------------------------------------------
             Black flying-fox  attat---tta-ttat------------------------------------------------------
B D                   Megabat  attat---tta-ttat------------------------------------------------------
                Big brown bat  actat---tta-ct-t------------------------------------------------------
         David's myotis (bat)  actat---tta-ct-t------------------------------------------------------
B D                  Microbat  actat---tta-ct-t------------------------------------------------------
B D                  Hedgehog  actat---tta-ttat------------------------------------------------------
B D                     Shrew  actct---tga-ttat------------------------------------------------------
              Star-nosed mole  actat---tta-ttat------------------------------------------------------
B D                  Elephant  acta----tta-ttat------------------------------------------------------
          Cape elephant shrew  actattattta-ttat------------------------------------------------------
B D                   Manatee  atta----tta-ttat------------------------------------------------------
             Cape golden mole  gctatcattta-ttat------------------------------------------------------
B D                    Tenrec  ataattatttg-ttct------------------------------------------------------
                     Aardvark  actgttactta-ttat------------------------------------------------------
B D                 Armadillo  gctat---tta-ttat------------------------------------------------------
B D                   Opossum  --tat---gtc-taat------------------------------------------------------
B D           Tasmanian devil  --gat---gtc-taat------------------------------------------------------
B D                   Wallaby  --tat---gtc-taat------------------------------------------------------
B D                  Platypus  ----------------------------------------------------------------------
  D              Saker falcon  -tctt---tttttttt------------------------------------------------------
  D          Peregrine falcon  -tctt---tttttttt------------------------------------------------------
  D       Collared flycatcher  -tctt---ttcatttt------------------------------------------------------
B D       Medium ground finch  -cctt---ttc-ttct------------------------------------------------------
B D               Zebra finch  -actc---ctc-ttct------------------------------------------------------
  D                    Parrot  -tttt---ttc-ttct------------------------------------------------------
  D           Green seaturtle  -acaa---atc-ccag------------------------------------------------------
  D  Chinese softshell turtle  -ccaa---atc-ccat------------------------------------------------------
  D    Spiny softshell turtle  -ccaa---atc-ccat------------------------------------------------------
         Pundamilia nyererei  ======================================================================
         Princess of Burundi  ======================================================================
      Yellowbelly pufferfish  ======================================================================
                 Spotted gar  ======================================================================
B D                      Fugu  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D               Stickleback  ======================================================================
                 Zebra mbuna  ======================================================================
B D                 Zebrafish  ======================================================================
       Burton's mouthbreeder  ======================================================================
          Southern platyfish  ======================================================================
B D        American alligator  ----------------------------------------------------------------------
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
B D                Budgerigar  ======================================================================
  D               Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Lizard  ======================================================================
          Tibetan ground jay  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                Coelacanth  ======================================================================
  D            Painted turtle  ======================================================================

                        Human  -----------------tttc---ctcc
                        Chimp  -----------------tttc---ctcc
                      Gorilla  -----------------tttc---ctcc
                    Orangutan  -----------------tttc---ctcc
                       Gibbon  -----------------tttc---ctcc
                       Rhesus  -----------------ttcc---cccc
          Crab-eating macaque  -----------------ttcc---cccc
                       Baboon  -----------------ttcc---cccc
                 Green monkey  -----------------ttcc---cccc
                     Marmoset  -----------------tttc---ctcc
              Squirrel monkey  -----------------tttc---ctcc
                     Bushbaby  -----------------tttc---ctcc
           Chinese tree shrew  -----------------cttc---ctcc
                     Squirrel  -----------------ttcc---ctcc
       Lesser Egyptian jerboa  -----------------ttgc---cttt
                 Prairie vole  -----------------tttc---cttt
              Chinese hamster  -----------------tttc---cttt
               Golden hamster  -----------------tttc---cttt
                        Mouse  -----------------tttc---cttt
                          Rat  -----------------tttc---cttt
               Naked mole-rat  -----------------tttc---ctcc
                   Guinea pig  -----------------tttc---ctc-
                   Chinchilla  -----------------ttgt---ctcc
             Brush-tailed rat  -----------------tttc---ctcg
                       Rabbit  -----------------tttt---ctgc
                         Pika  -----------------tttc---ctgc
                          Pig  -----------------tttc---ttcc
                       Alpaca  -----------------tttc---ctcc
               Bactrian camel  -----------------tttc---ctcc
                      Dolphin  nnnnnnnnnnnnnnnnatttc---ctcc
                 Killer whale  -----------------tttc---ctcc
             Tibetan antelope  -----------------tttc---ctcc
                          Cow  -----------------tttc---ctcc
                        Sheep  -----------------tttc---ctcc
                Domestic goat  -----------------ttcc---ctcc
                        Horse  -----------------tttc---ctcc
             White rhinoceros  -----------------tttt---ctgc
                          Cat  -----------------tttc---ctcc
                          Dog  -----------------tttc---ctcc
                      Ferret   -----------------tttc---ctcc
                        Panda  -----------------tttc---ctcc
               Pacific walrus  -----------------tttc---ctcc
                 Weddell seal  -----------------tttc---cttc
             Black flying-fox  -----------------gttc---ctcc
                      Megabat  -----------------gttc---ctcc
                Big brown bat  -----------------attc---ctcc
         David's myotis (bat)  -----------------attc---ctcc
                     Microbat  -----------------attc---ctcc
                     Hedgehog  -----------------tttc---caga
                        Shrew  -----------------tttc---ctcg
              Star-nosed mole  -----------------tttt---ctcc
                     Elephant  -----------------tttc---ctcc
          Cape elephant shrew  -----------------tttct--ttcc
                      Manatee  -----------------tttc---ctcc
             Cape golden mole  -----------------tttcc--ttcc
                       Tenrec  -----------------ttggc--ttcc
                     Aardvark  -----------------cttcc--ttcc
                    Armadillo  -----------------tttc---tttc
                      Opossum  --------------gcattta---gccc
              Tasmanian devil  --------------gcactta---gccc
                      Wallaby  --------------gcactta---gcct
                     Platypus  ---------------------gcaagcc
                 Saker falcon  -----------------tttc---cttt
             Peregrine falcon  -----------------tttc---cttt
          Collared flycatcher  -----------------tttc---ctcc
          Medium ground finch  -----------------tttc---ctac
                  Zebra finch  -----------------tttc---ctgt
                       Parrot  -----------------tttc---ctcg
              Green seaturtle  -----------------tttg---ata-
     Chinese softshell turtle  -----------------tttg---ata-
       Spiny softshell turtle  -----------------tttg---ata-
          Pundamilia nyererei  ============================
          Princess of Burundi  ============================
       Yellowbelly pufferfish  ============================
                  Spotted gar  ============================
                         Fugu  ============================
     Mexican tetra (cavefish)  ============================
                  Stickleback  ============================
                  Zebra mbuna  ============================
                    Zebrafish  ============================
        Burton's mouthbreeder  ============================
           Southern platyfish  ============================
           American alligator  ----------------------------
                      Chicken  ============================
                 Mallard duck  ============================
                   Budgerigar  ============================
                  Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Lizard  ============================
           Tibetan ground jay  ============================
       White-throated sparrow  ============================
                   Coelacanth  ============================
               Painted turtle  ============================

Inserts between block 13 and 14 in window
  D      Collared flycatcher 1975bp
B D      Medium ground finch 1bp
B D              Zebra finch 1bp

Alignment block 14 of 956 in window, 146637005 - 146637005, 1 bps 
B D                     Human  a
B D                     Chimp  a
B D                   Gorilla  a
B D                 Orangutan  a
B D                    Gibbon  a
B D                    Rhesus  a
B D       Crab-eating macaque  a
B D                    Baboon  a
B D              Green monkey  a
B D                  Marmoset  a
B D           Squirrel monkey  a
B D                  Bushbaby  a
           Chinese tree shrew  a
B D                  Squirrel  a
       Lesser Egyptian jerboa  g
                 Prairie vole  t
B D           Chinese hamster  a
               Golden hamster  a
B D                     Mouse  a
B D                       Rat  a
B D            Naked mole-rat  g
                   Chinchilla  g
             Brush-tailed rat  g
B D                    Rabbit  a
B D                      Pika  a
B D                       Pig  a
B D                    Alpaca  a
               Bactrian camel  a
B D                   Dolphin  a
                 Killer whale  a
             Tibetan antelope  a
B D                       Cow  a
B D                     Sheep  a
                Domestic goat  a
B D                     Horse  a
B D          White rhinoceros  a
B D                       Cat  a
B D                       Dog  a
B D                   Ferret   a
B D                     Panda  a
               Pacific walrus  a
                 Weddell seal  a
             Black flying-fox  a
B D                   Megabat  a
                Big brown bat  a
         David's myotis (bat)  a
B D                  Microbat  a
B D                  Hedgehog  g
B D                     Shrew  g
              Star-nosed mole  a
B D                  Elephant  a
          Cape elephant shrew  a
B D                   Manatee  a
             Cape golden mole  a
B D                    Tenrec  a
                     Aardvark  a
B D                 Armadillo  a
B D                   Opossum  a
B D           Tasmanian devil  a
B D                   Wallaby  a
B D                  Platypus  a
B D       Medium ground finch  a
B D               Zebra finch  a
B D                Guinea pig  -
         Pundamilia nyererei  =
         Princess of Burundi  =
      Yellowbelly pufferfish  =
                 Spotted gar  =
B D                      Fugu  =
    Mexican tetra (cavefish)  =
B D               Stickleback  =
                 Zebra mbuna  =
B D                 Zebrafish  =
       Burton's mouthbreeder  =
          Southern platyfish  =
B D        American alligator  -
B D                   Chicken  =
  D              Mallard duck  =
  D                    Parrot  -
B D                Budgerigar  =
  D          Peregrine falcon  -
  D              Saker falcon  -
  D               Rock pigeon  N
B D                    Lizard  =
  D       Collared flycatcher  =
          Tibetan ground jay  =
  D    White-throated sparrow  =
  D           Green seaturtle  -
B D                Coelacanth  =
  D    Spiny softshell turtle  -
  D  Chinese softshell turtle  -
  D            Painted turtle  =

Alignment block 15 of 956 in window, 146637006 - 146637008, 3 bps 
B D                     Human  --cac
B D                     Chimp  --cac
B D                   Gorilla  --cac
B D                 Orangutan  --cac
B D                    Gibbon  --cac
B D                    Rhesus  --cac
B D       Crab-eating macaque  --cac
B D                    Baboon  --cac
B D              Green monkey  --cac
B D                  Marmoset  --cac
B D           Squirrel monkey  --cag
B D                  Bushbaby  --ctc
           Chinese tree shrew  --atc
B D                  Squirrel  --cac
       Lesser Egyptian jerboa  --cac
                 Prairie vole  --cgc
B D           Chinese hamster  --cgc
               Golden hamster  --tgc
B D                     Mouse  --cgc
B D                       Rat  --cgc
B D            Naked mole-rat  --cgg
B D                Guinea pig  --cag
                   Chinchilla  --cat
             Brush-tailed rat  --tgt
B D                    Rabbit  --cac
B D                      Pika  --cgc
B D                       Pig  --cca
B D                    Alpaca  --ctt
               Bactrian camel  --ctt
B D                   Dolphin  --cat
                 Killer whale  --cac
             Tibetan antelope  --tgt
B D                       Cow  --tgt
B D                     Sheep  --tgt
                Domestic goat  --tat
B D                     Horse  --cag
B D          White rhinoceros  --cag
B D                       Cat  --cat
B D                       Dog  --cat
B D                   Ferret   --cat
B D                     Panda  --ctt
               Pacific walrus  --cat
                 Weddell seal  --cat
             Black flying-fox  --cat
B D                   Megabat  --cat
                Big brown bat  --cag
         David's myotis (bat)  --cag
B D                  Microbat  --cag
B D                  Hedgehog  --ctc
B D                     Shrew  --cac
              Star-nosed mole  --cac
B D                  Elephant  --cac
          Cape elephant shrew  --cat
B D                   Manatee  --cac
             Cape golden mole  --aac
B D                    Tenrec  --cac
                     Aardvark  --cac
B D                 Armadillo  --cgc
B D                   Opossum  --cac
B D           Tasmanian devil  --cgc
B D                   Wallaby  --cac
B D                  Platypus  --cca
  D              Saker falcon  --c--
  D          Peregrine falcon  --c--
B D       Medium ground finch  gac--
B D               Zebra finch  gac--
  D                    Parrot  -tc--
  D           Green seaturtle  --c--
  D            Painted turtle  --c--
  D  Chinese softshell turtle  --c--
  D    Spiny softshell turtle  --c--
         Pundamilia nyererei  =====
         Princess of Burundi  =====
      Yellowbelly pufferfish  =====
                 Spotted gar  =====
B D                      Fugu  =====
    Mexican tetra (cavefish)  =====
B D               Stickleback  =====
                 Zebra mbuna  =====
B D                 Zebrafish  =====
       Burton's mouthbreeder  =====
          Southern platyfish  =====
B D        American alligator  -----
B D                   Chicken  =====
  D              Mallard duck  =====
B D                Budgerigar  =====
  D               Rock pigeon  NNNNN
B D                    Lizard  =====
  D       Collared flycatcher  =====
          Tibetan ground jay  =====
  D    White-throated sparrow  =====
B D                Coelacanth  =====

Inserts between block 15 and 16 in window
  D             Saker falcon 12bp
  D         Peregrine falcon 12bp
  D                   Parrot 10bp
  D          Green seaturtle 2bp
  D           Painted turtle 2bp
  D Chinese softshell turtle 2bp
  D   Spiny softshell turtle 2bp

Alignment block 16 of 956 in window, 146637009 - 146637035, 27 bps 
B D                     Human  agg------------------------------------------------------gga-a-gagaaag
B D                     Chimp  agg------------------------------------------------------gga-a-gagaaag
B D                   Gorilla  agg------------------------------------------------------gga-a-gagaaag
B D                 Orangutan  agg------------------------------------------------------gga-a-gagaaag
B D                    Gibbon  atg------------------------------------------------------gga-a-gagaaag
B D                    Rhesus  agg------------------------------------------------------gga-a-gagaaag
B D       Crab-eating macaque  agg------------------------------------------------------gga-a-gagaaag
B D                    Baboon  agg------------------------------------------------------gga-a-gagaaag
B D              Green monkey  agg------------------------------------------------------gga-a-gagaaag
B D                  Marmoset  agg--------------------------------------------------------a-a-gagaaag
B D           Squirrel monkey  agg------------------------------------------------------aaa-a-gagaaag
B D                  Bushbaby  ggg------------------------------------------------------ggg-a-gagaaag
           Chinese tree shrew  tag------------------------------------------------------gga-a-aagaaag
B D                  Squirrel  aag------------------------------------------------------ggc-a-gagaaag
       Lesser Egyptian jerboa  aga------------------------------------------------------aaaga-aagaaag
                 Prairie vole  agg------------------------------------------------------gga-a-gagaaag
B D           Chinese hamster  aggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-------------
               Golden hamster  agg------------------------------------------------------gaa-a-gagaaag
B D                     Mouse  agg------------------------------------------------------gga-a-gagaaag
B D                       Rat  agg------------------------------------------------------gga-a-gagaaag
B D            Naked mole-rat  aga------------------------------------------------------gga-a-gagaagg
B D                Guinea pig  agg------------------------------------------------------gaa-g-gaacaaa
                   Chinchilla  agg------------------------------------------------------gaa-a-gagaaag
             Brush-tailed rat  agg------------------------------------------------------gaa-a-gagaaag
B D                    Rabbit  agg------------------------------------------------------gga-a-gagagag
B D                      Pika  ggg------------------------------------------------------gga-a-gcgaaat
B D                       Pig  agg------------------------------------------------------gga-g-gagaaag
B D                    Alpaca  agg------------------------------------------------------gga-g-gagaaag
               Bactrian camel  agg------------------------------------------------------gga-g-gagaaag
B D                   Dolphin  agg------------------------------------------------------gga-g-gaggaag
                 Killer whale  agg------------------------------------------------------gga-g-gaggaag
             Tibetan antelope  aag------------------------------------------------------gga-g-gaggaag
B D                       Cow  act------------------------------------------------------gga-g-gaggaag
B D                     Sheep  aac------------------------------------------------------gga-g-gaggaag
                Domestic goat  aag------------------------------------------------------gga-g-gaggaag
B D                     Horse  agg------------------------------------------------------gga-g-gagaaaa
B D          White rhinoceros  agg------------------------------------------------------gga-g-gagaaaa
B D                       Cat  agg------------------------------------------------------gga-a-gagaaag
B D                       Dog  agt------------------------------------------------------gg--g-gagaaag
B D                   Ferret   aga------------------------------------------------------gga-g-gaaaaag
B D                     Panda  agg------------------------------------------------------aga-g-gagagag
               Pacific walrus  agg------------------------------------------------------gga-g-gagaaag
                 Weddell seal  agg------------------------------------------------------gga-g-gagaaag
             Black flying-fox  agg------------------------------------------------------gat-g-gagaaag
B D                   Megabat  agg------------------------------------------------------gat-g-gagaaag
                Big brown bat  aag------------------------------------------------------gga-g-gagaacg
         David's myotis (bat)  aag------------------------------------------------------gga-g-gagaaag
B D                  Microbat  aag------------------------------------------------------gga-g-gagaaag
B D                  Hedgehog  ccg------------------------------------------------------gga-g-aagaaat
B D                     Shrew  tg-------------------------------------------------------------------g
              Star-nosed mole  agg------------------------------------------------------gga-g-gagaaag
B D                  Elephant  agg------------------------------------------------------gga-a-gagaaag
          Cape elephant shrew  aag------------------------------------------------------gga-a-gagaaaa
B D                   Manatee  agg------------------------------------------------------gga-a-gagaaag
             Cape golden mole  agg------------------------------------------------------gca-a-gagaaag
B D                    Tenrec  ag---------------------------------------------------------a-a-gagaaag
                     Aardvark  agg------------------------------------------------------gga-a-gagaaag
B D                 Armadillo  agg------------------------------------------------------gga-a-gagaaag
B D                   Opossum  agg------------------------------------------------------gaa-a--ggggaa
B D           Tasmanian devil  agg------------------------------------------------------gaa-a-gggggaa
B D                   Wallaby  agg------------------------------------------------------gaa-a--agggaa
B D                  Platypus  agg------------------------------------------------------cta-atgagggag
  D              Saker falcon  ------------------------------------------------------------------aggg
  D          Peregrine falcon  ------------------------------------------------------------------aggg
B D       Medium ground finch  ----------------------------------------------------------------------
B D               Zebra finch  ----------------------------------------------------------------------
B D        American alligator  ----------------------------------------------------------------------
  D           Green seaturtle  ----------------------------------------------------------------------
  D            Painted turtle  ----------------------------------------------------------------------
  D  Chinese softshell turtle  ----------------------------------------------------------------------
  D    Spiny softshell turtle  ----------------------------------------------------------------------
         Pundamilia nyererei  ======================================================================
         Princess of Burundi  ======================================================================
      Yellowbelly pufferfish  ======================================================================
                 Spotted gar  ======================================================================
B D                      Fugu  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D               Stickleback  ======================================================================
                 Zebra mbuna  ======================================================================
B D                 Zebrafish  ======================================================================
       Burton's mouthbreeder  ======================================================================
          Southern platyfish  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
  D                    Parrot  ======================================================================
B D                Budgerigar  ======================================================================
  D               Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Lizard  ======================================================================
  D       Collared flycatcher  ======================================================================
          Tibetan ground jay  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                Coelacanth  ======================================================================

                        Human  ggaagc----------------c---cga-------gag-------------------
                        Chimp  ggaagc----------------c---cga-------gag-------------------
                      Gorilla  ggaagc----------------c---cga-------gag-------------------
                    Orangutan  gcaagc----------------c---cga-------gag-------------------
                       Gibbon  gcaagc----------------c---cga-------gag-------------------
                       Rhesus  gcaagc----------------c---cgg-------gag-------------------
          Crab-eating macaque  gcaagc----------------c---cgg-------gag-------------------
                       Baboon  gcaagc----------------c---cgg-------gag-------------------
                 Green monkey  gcaagc----------------c---cgg-------gag-------------------
                     Marmoset  gcaagc----------------c---tga-------gag-------------------
              Squirrel monkey  gcaagc----------------c---cga-------gag-------------------
                     Bushbaby  gcgagt----------------cggatga-------gag-------------------
           Chinese tree shrew  accaga----------------c---caa-------gcc-------------------
                     Squirrel  gcaagc----------------c---cga-------gag-------------------
       Lesser Egyptian jerboa  gcaagc----------------c---cgagtgtggtggg-------------------
                 Prairie vole  gcagat----------------t---cca-------gac-------------------
              Chinese hamster  ------------------------------------gac-------------------
               Golden hamster  gctgcc----------------t---cca-------gac-------------------
                        Mouse  gcgggc----------------t---cca-------gac-------------------
                          Rat  gcgggc----------------t---cca-------gac-------------------
               Naked mole-rat  gcaagc----------------c---ggg-------gaa-------------------
                   Guinea pig  acaagc----------------c---cga-------gaa-------------------
                   Chinchilla  gtaagc----------------c---aga-------gaa-------------------
             Brush-tailed rat  gcaagc----------------c---cga-------gga-------------------
                       Rabbit  gcaagc----------------a---caa-------gac-------------------
                         Pika  ggaagc----------------c---tga-------gac-------------------
                          Pig  gcaagc----------------c---cgc-------gag-------------------
                       Alpaca  gcaagc----------------c---cag-------gag-------------------
               Bactrian camel  gcaagc----------------c---cag-------gag-------------------
                      Dolphin  gcaagc----------------c---ccg-------ggg-------------------
                 Killer whale  gcaagc----------------c---ccg-------ggg-------------------
             Tibetan antelope  gcaagc----------------c---tcg-------gag-------------------
                          Cow  gcaagc----------------c---tcg-------gag-------------------
                        Sheep  gcaagc----------------c---tcg-------gag-------------------
                Domestic goat  gcaagc----------------c---tcg-------gag-------------------
                        Horse  gcaagc----------------c---cgg-------gag-------------------
             White rhinoceros  gcaagc----------------c---ccg-------gag-------------------
                          Cat  acatgt----------------c---caa-------gga-------------------
                          Dog  gcaagc----------------c---cgg-------gga-------------------
                      Ferret   gcaagt----------------c---tgg-------gga-------------------
                        Panda  acaagt----------------c---cgg-------ggt-------------------
               Pacific walrus  gcaagt----------------c---cgg-------gga-------------------
                 Weddell seal  gcaagt----------------c---ctg-------gga-------------------
             Black flying-fox  gcaaac----------------c---cgg-------gag-------------------
                      Megabat  gcaaac----------------c---cgg-------gag-------------------
                Big brown bat  gcaaac----------------c---tgg-------gag-------------------
         David's myotis (bat)  gcaaac----------------c---tgg-------gag-------------------
                     Microbat  gctaac----------------c---tag-------gag-------------------
                     Hedgehog  gccggc----------------c---ccg-------cag-------------------
                        Shrew  tccagc----------------c---cag-------gca-------------------
              Star-nosed mole  gcaagc----------------c---tga-------gag-------------------
                     Elephant  gaaagc----------------c---cag-------gaa-------------------
          Cape elephant shrew  gcaatc----------------c---ca--------gag-------------------
                      Manatee  gcaagc----------------c---cgg-------gag-------------------
             Cape golden mole  gcaagc----------------c---cgg-------gag-------------------
                       Tenrec  gcaaac----------------c---c-c-------cag-------------------
                     Aardvark  tcaagc----------------c---cgg-------gtg-------------------
                    Armadillo  gcaggc----------------c---cga-------gag-------------------
                      Opossum  acaaataaacaaaccaa----ac---taa-----------------------------
              Tasmanian devil  acaaacaaacccaccgacccgac---cga-------ccg-------------------
                      Wallaby  acaaacaaaccaaccaaccaaac---taa--------gg-------------------
                     Platypus  gtaacc----------------c---ctc-------agt-------------------
                 Saker falcon  aaaggc--------------agg---ggg-------aagt-------------tagcg
             Peregrine falcon  aaaggc--------------agg---ggg-------aagt-------------tagcg
          Medium ground finch  --aggc---------------gt---ggg-------aaat-------------tggcg
                  Zebra finch  --aggc---------------gt---ggg-------aaat-------------tggcg
           American alligator  ---------------------------gg-------cagc------------------
              Green seaturtle  ----------------------c---ggg-------gagtacccaatgtctcctggtg
               Painted turtle  ----------------------t---ggg-------aagtacccagtgtctcctggtg
     Chinese softshell turtle  ----------------------t---gga-------aaatccccaatgtctcctggtg
       Spiny softshell turtle  ----------------------t---ggg-------aaatccccaatgtaccctggtg
          Pundamilia nyererei  ==========================================================
          Princess of Burundi  ==========================================================
       Yellowbelly pufferfish  ==========================================================
                  Spotted gar  ==========================================================
                         Fugu  ==========================================================
     Mexican tetra (cavefish)  ==========================================================
                  Stickleback  ==========================================================
                  Zebra mbuna  ==========================================================
                    Zebrafish  ==========================================================
        Burton's mouthbreeder  ==========================================================
           Southern platyfish  ==========================================================
                      Chicken  ==========================================================
                 Mallard duck  ==========================================================
                       Parrot  ==========================================================
                   Budgerigar  ==========================================================
                  Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Lizard  ==========================================================
          Collared flycatcher  ==========================================================
           Tibetan ground jay  ==========================================================
       White-throated sparrow  ==========================================================
                   Coelacanth  ==========================================================

Inserts between block 16 and 17 in window
  D         Peregrine falcon 1505bp
B D      Medium ground finch 25bp
B D              Zebra finch 25bp
B D       American alligator 11bp
  D          Green seaturtle 1bp
  D           Painted turtle 1bp
  D Chinese softshell turtle 1bp
  D   Spiny softshell turtle 1bp

Alignment block 17 of 956 in window, 146637036 - 146637037, 2 bps 
B D                     Human  g---a
B D                     Chimp  g---a
B D                   Gorilla  g---a
B D                 Orangutan  g---a
B D                    Gibbon  g---a
B D                    Rhesus  g---a
B D       Crab-eating macaque  g---a
B D                    Baboon  g---a
B D              Green monkey  g---a
B D                  Marmoset  t---a
B D           Squirrel monkey  t---a
B D                  Bushbaby  t---a
           Chinese tree shrew  t---a
B D                  Squirrel  t---g
       Lesser Egyptian jerboa  t---g
                 Prairie vole  c---g
B D           Chinese hamster  t---g
               Golden hamster  t---g
B D                     Mouse  t---g
B D                       Rat  t---g
B D            Naked mole-rat  t---g
B D                Guinea pig  g----
                   Chinchilla  g---g
             Brush-tailed rat  t---g
B D                    Rabbit  t---a
B D                      Pika  t---g
B D                       Pig  t---a
B D                    Alpaca  t--at
               Bactrian camel  tgaat
B D                   Dolphin  t----
                 Killer whale  t----
             Tibetan antelope  t----
B D                       Cow  t----
B D                     Sheep  t----
                Domestic goat  t----
B D                     Horse  t---a
B D          White rhinoceros  t---a
B D                       Cat  t---a
B D                       Dog  c---a
B D                   Ferret   t---a
B D                     Panda  t---a
               Pacific walrus  t---g
                 Weddell seal  t---a
             Black flying-fox  t---a
B D                   Megabat  t---a
                Big brown bat  t---a
         David's myotis (bat)  t---a
B D                  Microbat  t---a
B D                     Shrew  t---c
              Star-nosed mole  a---a
B D                  Elephant  c---a
          Cape elephant shrew  c---a
B D                   Manatee  c---a
             Cape golden mole  c---a
B D                    Tenrec  c---a
                     Aardvark  t---a
B D                 Armadillo  t---g
B D                   Opossum  ----g
B D           Tasmanian devil  a---g
B D                   Wallaby  c---g
B D                  Platypus  a---a
B D       Medium ground finch  ---ga
B D               Zebra finch  ---ga
  D           Green seaturtle  ---ta
  D            Painted turtle  ---ta
  D  Chinese softshell turtle  ---ta
  D    Spiny softshell turtle  ---ta
B D                  Hedgehog  -----
         Pundamilia nyererei  =====
         Princess of Burundi  =====
      Yellowbelly pufferfish  =====
                 Spotted gar  =====
B D                      Fugu  =====
    Mexican tetra (cavefish)  =====
B D               Stickleback  =====
                 Zebra mbuna  =====
B D                 Zebrafish  =====
       Burton's mouthbreeder  =====
          Southern platyfish  =====
B D        American alligator  =====
B D                   Chicken  =====
  D              Mallard duck  =====
  D                    Parrot  =====
B D                Budgerigar  =====
  D          Peregrine falcon  =====
  D              Saker falcon  NNNNN
  D               Rock pigeon  NNNNN
B D                    Lizard  =====
  D       Collared flycatcher  =====
          Tibetan ground jay  =====
  D    White-throated sparrow  =====
B D                Coelacanth  =====

Inserts between block 17 and 18 in window
B D      Medium ground finch 14bp
B D              Zebra finch 15bp

Alignment block 18 of 956 in window, 146637038 - 146637064, 27 bps 
B D                     Human  tccag--------------ggaaagca--gaagggggttaagg
B D                     Chimp  tccag--------------ggaaagca--gaagggggttaagg
B D                   Gorilla  tccag--------------ggaaagca--gaagggggttaagg
B D                 Orangutan  tccag--------------ggaaagca--gaagggggttaagg
B D                    Gibbon  tccag--------------ggaaagca--gaagggggttaagg
B D                    Rhesus  tccag--------------ggaaagcg--gaagggaattaagg
B D       Crab-eating macaque  tccag--------------ggaaagcg--gaagggaattaagg
B D                    Baboon  tccag--------------ggaaagcg--gaagggaattaagg
B D              Green monkey  tccag--------------ggaaagcg--gaagggaattaagg
B D                  Marmoset  tccga--------------ggaaagca--gaaggaggttaagg
B D           Squirrel monkey  tccaa--------------ggaaagca--gaagggggttaagc
B D                  Bushbaby  tggagtgt-------ggcaggaaagcc--gaagggggtc-agg
           Chinese tree shrew  cagaa--------------ggaaggct--gtacgg-gttaagg
B D                  Squirrel  g-gaa--------------ggaaagct--aaagggatttaagg
       Lesser Egyptian jerboa  aagaa--------------ggcaagcg--gaagagatttaagc
                 Prairie vole  gagaa--------------aaaaagcg--gcagagatttaagc
B D           Chinese hamster  gagaa--------------gaaaagct--gcagagatttaagc
               Golden hamster  gagaa--------------gaaaagcg--gcagagatttaagc
B D                     Mouse  gc-------------------aaagca--gcagagatttaagc
B D                       Rat  gcgaa--------------gaaaagcg--gcagagatttaagc
B D            Naked mole-rat  acgaa--------------ggaaagct--gaagagatttaagg
B D                Guinea pig  --------------------gaaagcg--aaagagatttaagc
                   Chinchilla  acgac--------------cgaaagct--acagagatttaagg
             Brush-tailed rat  acgaa--------------ggaaagct--aaagagatttaagg
B D                    Rabbit  acgaa--------------agagagcc--gaagggggttaagg
B D                      Pika  gcgaa--------------agagaccatggacagaggttaagg
B D                       Pig  gcgca--------------agaaagag--caaggggggtcagc
B D                    Alpaca  tc-ca--------------agaaagcg--caaggggtttaagc
               Bactrian camel  acgca--------------agaaagcg--caaggggtttaagc
B D                   Dolphin  -------------------------tg--caagggggttaagc
                 Killer whale  -------------------------tg--ccagggggttaagc
             Tibetan antelope  -------------------------tg--caagggggttaagc
B D                       Cow  -------------------------tg--caagggggttaagc
B D                     Sheep  -------------------------tg--caagggggttaagc
                Domestic goat  -------------------------tg--caagggggttaagc
B D                     Horse  gctca--------------ggaaagag--caagggaattaaga
B D          White rhinoceros  gctca--------------ggaaagcg--caagggggttaagg
B D                       Cat  gcgca--------------ggaaagcg--caa-ggggttaagg
B D                       Dog  gcgca--------------ggagagcg--cagaggggttaagg
B D                   Ferret   gcgca--------------ggaaagcg--cagaggggttaagg
B D                     Panda  gcgca--------------ggaaagca--caagggggttaagc
               Pacific walrus  gcgct--------------ggaaagcg--caaggaggttaagg
                 Weddell seal  gcgct--------------ggaaagcg--caagggggttaagg
             Black flying-fox  gcgca--------------ggaaagcg--cagaggggttaagg
B D                   Megabat  gcgca--------------ggaaagcg--cagaggggttaagg
                Big brown bat  gcacg--------------ggaaagcg--caagggggttaagg
         David's myotis (bat)  gcaca--------------ggaaagcg--caagggggttaagg
B D                  Microbat  gcaca--------------ggaaagcg--caagggggttaagg
B D                  Hedgehog  ----------------------aagca--caacgcggttcagg
B D                     Shrew  gagct--------------gaaaagca--cca-ggggttcagg
              Star-nosed mole  gtgaa--------------ggaaaaca--tag-ggggttcagg
B D                  Elephant  gcgcag-------------gaaaagcc--caatggggttaagg
          Cape elephant shrew  gctcct-------------agaaaacc--cagcggagttaagg
B D                   Manatee  gctca--------------ggaaagcc--caatggagttaagg
             Cape golden mole  gtgca--------------agaaagcg--caattgggttaagg
B D                    Tenrec  gctca--------------agatagcc--caatggggttaagg
                     Aardvark  gctca--------------agaaaacc--caacgggattaagg
B D                 Armadillo  gcaca--------------ggacagcc--taatgaggttaagg
B D                   Opossum  gcggc--------------cgacagcc--caggaagcgaaatt
B D           Tasmanian devil  gcggc--------------cgccagcc--cagggagggaaatt
B D                   Wallaby  gcgg-----------------acagcc--caggaagtgaaatt
B D                  Platypus  atcca--------------gtggccca--aaagtgaatttctg
B D       Medium ground finch  -------------------cgccggcg--ggggcag-------
B D               Zebra finch  -------gccgatgggggacgccggcg--ggggcag-------
  D                    Parrot  ---------------aagacagcagca--ggaggaagt-----
B D        American alligator  -------aatgatcaagcccgacggcg--agggcag-------
  D           Green seaturtle  -------tctggaggaatcgggcagca--gggggaaggtgcag
  D            Painted turtle  -------tctggaagagtcgggcagca--gggggaaggtgcag
  D  Chinese softshell turtle  -------tttggaga----aggcagca--gagggacggtgcaa
  D    Spiny softshell turtle  -------tctggagaaagcaggcagca--gagggacggtgcaa
         Pundamilia nyererei  ===========================================
         Princess of Burundi  ===========================================
      Yellowbelly pufferfish  ===========================================
                 Spotted gar  ===========================================
B D                      Fugu  ===========================================
    Mexican tetra (cavefish)  ===========================================
B D               Stickleback  ===========================================
                 Zebra mbuna  ===========================================
B D                 Zebrafish  ===========================================
       Burton's mouthbreeder  ===========================================
          Southern platyfish  ===========================================
B D                   Chicken  ===========================================
  D              Mallard duck  ===========================================
B D                Budgerigar  ===========================================
  D          Peregrine falcon  ===========================================
  D              Saker falcon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
  D               Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Lizard  ===========================================
  D       Collared flycatcher  ===========================================
          Tibetan ground jay  ===========================================
  D    White-throated sparrow  ===========================================
B D                Coelacanth  ===========================================

Alignment block 19 of 956 in window, 146637065 - 146637105, 41 bps 
B D                     Human  accatgga---cagagc------------cc-gtc------------gc-----------------g---
B D                     Chimp  accatgga---cagagc------------cc-gtc------------gc-----------------g---
B D                   Gorilla  accatgga---cagagc------------cc-gtc------------gc-----------------g---
B D                 Orangutan  accatgga---cagagc------------cc-gtc------------gc-----------------g---
B D                    Gibbon  accatgga---cagagc------------ct-gtc------------gc-----------------g---
B D                    Rhesus  accatgga---cagagc------------ct-gtc------------gc-----------------g---
B D       Crab-eating macaque  accatgga---cagagc------------ct-gtc------------gc-----------------g---
B D                    Baboon  accatgga---cagagc------------ct-gtc------------gc-----------------g---
B D              Green monkey  accatgga---cagagc------------ct-gtc------------gc-----------------g---
B D                  Marmoset  accttgga---cagagc------------cc-gtc------------gc-----------------g---
B D           Squirrel monkey  accttgga---cagagc------------cc-ttc------------gc-----------------g---
B D                  Bushbaby  accatgga---cagaac------------cc-gcc------------gc-----------------g---
           Chinese tree shrew  accatgga---cagagc------------cc-gcc------------gc-----------------a---
B D                  Squirrel  accatgga---cagagc------------cc-acc------------gc-----------------g---
       Lesser Egyptian jerboa  accacgga---cagagc------------cc-acg------------gc-----------------t---
                 Prairie vole  accacgga---cagagc------------cg-gct------------gt-----------------g---
B D           Chinese hamster  accacgga---cagagc------------cg-gtc------------gc-----------------g---
               Golden hamster  accacgga---cagagc------------cg-gtc------------gc-----------------g---
B D                     Mouse  accacgga---cagatc------------cc-atc------------gc-----------------g---
B D                       Rat  accacgga---cagatc------------cc-gac------------gc-----------------g---
B D            Naked mole-rat  accacgga---cagagc------------cc-acg------------gc-----------------g---
B D                Guinea pig  accatgga---cagagc------------cc-acg------------ac-----------------g---
                   Chinchilla  accacgga---cagagc------------cc-aca------------gc-----------------g---
             Brush-tailed rat  accacgga---cagagc------------cc-acg------------gc-----------------c---
B D                    Rabbit  accatgga---cagagc------------ct-gcc------------gc-----------------g---
B D                      Pika  accatgga---cagagc------------ct-gcc------------gc-----------------g---
B D                       Pig  accatgga---cagagc------------cc-gcc------------gc-----------------t---
B D                    Alpaca  accacgga---cagagc------------c----------------------------------------
               Bactrian camel  accacgga---cagagc------------c----------------------------------------
B D                   Dolphin  accatgga---cagagc------------cc-gtc------------gc-----------------g---
                 Killer whale  accatgga---cagagc------------cc-gtc------------gc-----------------g---
             Tibetan antelope  accatgga---cagagc------------cc-gcc------------gc-----------------g---
B D                       Cow  accatgga---cagagc------------cc-gtc------------gc-----------------g---
B D                     Sheep  accatgga---cagagc------------cc-gcc------------gc-----------------a---
                Domestic goat  accatgga---cagagc------------cc-gcc------------gc-----------------g---
B D                     Horse  accatgga---cagagc------------cc-gtc------------gc-----------------g---
B D          White rhinoceros  accatgga---cagagc------------cc-gtc------------gc-----------------g---
B D                       Cat  accatgga---cagaac------------cc-gtc------------gc-----------------c---
B D                       Dog  accgtgga---cagagc------------ca-gtg------------gc-----------------g---
B D                   Ferret   accgtgga---cagagc------------tc-gcc------------gt-----------------g---
B D                     Panda  accgtgga---cagagc------------tc-ttc------------gc-----------------g---
               Pacific walrus  accgtgga---cagagc------------cc-ttc------------gc-----------------g---
                 Weddell seal  accgtgga---cagagc------------cc-gtc------------gc-----------------g---
             Black flying-fox  accatgga---cagagt------------cc-gtc------------gc-----------------g---
B D                   Megabat  accatgga---cagagt------------cc-gtc------------gc-----------------g---
                Big brown bat  accatgga---cagatc------------cc-gtc------------gc-----------------g---
         David's myotis (bat)  accatgga---cagatc------------cc-gcc------------gc-----------------g---
B D                  Microbat  accatgga---cagatc------------cc-gtc------------gc-----------------a---
B D                  Hedgehog  accttgga---cagagc------------cc-gcc-----------------------------------
B D                     Shrew  accatgga---tagaga------------cc-gcc------------g----------------------
              Star-nosed mole  accatgga---cagagc------------c----------------------------------------
B D                  Elephant  accatgga---cagggc------------cc-gcc------------gc-----------------g---
          Cape elephant shrew  accacgga---cagagc------------cc-gcc------------gc-----------------a---
B D                   Manatee  accatgga---cagagc------------cc-gcc------------ga-----------------g---
             Cape golden mole  accatgga---tagagcctgtggcttcttcc-ccc------------tc-----------------c---
B D                    Tenrec  accatgga---cagagc-----------tct-ccc------------ac-----------------t---
                     Aardvark  accatgga---cagaga------------cc-gcc------------gc-----------------g---
B D                 Armadillo  accatgga---cagagc------------cc-gcg------------gc-----------------g---
B D                   Opossum  catttggaac-cagagc------------ct-ggtgaaggaatcatgag-----------------g---
B D           Tasmanian devil  cg-ttgggatccagagc------------ccaggc----------ggag-----------------a---
B D                   Wallaby  cgtttggatc-cagagc------------ccaggtggagaaatcagaag-----------------g---
B D                  Platypus  accctggc---cagcag------------cc-ccc------------tc-----------------c---
B D       Medium ground finch  ------------------------------------------------------------------c---
B D               Zebra finch  ------------------------------------------------------------------c---
  D                    Parrot  ------------------------------------------------------------------t---
B D        American alligator  ------------------------------------------------------------------ccgg
  D           Green seaturtle  -----------------------------------------------acggagggatgagatgccca---
  D            Painted turtle  -----------------------------------------------acggagggatgag------a---
  D  Chinese softshell turtle  -----------------------------------------------ataaagggatgag------a---
  D    Spiny softshell turtle  -----------------------------------------------atagagggatcag------a---
         Pundamilia nyererei  ======================================================================
         Princess of Burundi  ======================================================================
      Yellowbelly pufferfish  ======================================================================
                 Spotted gar  ======================================================================
B D                      Fugu  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D               Stickleback  ======================================================================
                 Zebra mbuna  ======================================================================
B D                 Zebrafish  ======================================================================
       Burton's mouthbreeder  ======================================================================
          Southern platyfish  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
B D                Budgerigar  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
  D               Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Lizard  ======================================================================
  D       Collared flycatcher  ======================================================================
          Tibetan ground jay  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                Coelacanth  ======================================================================

                        Human  --cgct------------cgttgctgcc---gcctt
                        Chimp  --cgct------------cgttgctgcc---gcctt
                      Gorilla  --cgct------------cgttgctgcc---gcctt
                    Orangutan  --cgct------------cgttgcagcc---gcctt
                       Gibbon  --cgct------------cgttgctgcc---gcctt
                       Rhesus  --cgct------------tgttgctgcc---gcctt
          Crab-eating macaque  --cgct------------tgttgctgcc---gcctt
                       Baboon  --cgct------------tgttgctgcc---gcctt
                 Green monkey  --cgct------------tgttgctgcc---gcctt
                     Marmoset  --ctct------------cattgctgca---gcctt
              Squirrel monkey  --ccct------------cattgctgcc---gcttt
                     Bushbaby  --cgtt------------ctttgctgct---gtttt
           Chinese tree shrew  --ggct------------ctgtgctgcg---gcagt
                     Squirrel  --cact------------cta-gctgtg---ggttt
       Lesser Egyptian jerboa  --cgct------------ccgcgccacc---tct--
                 Prairie vole  --cgct------------caaagcccag---gcttc
              Chinese hamster  --cggt------------caatgccgag---gcttt
               Golden hamster  --cggt------------cagtgctgag---gcttt
                        Mouse  --ttgt------------caaagcagag---gcttt
                          Rat  --ctgt------------aaaagctgag---gcttt
               Naked mole-rat  --ctat------------cctagccgga---gcctt
                   Guinea pig  --cgct------------tttcactgcc---acctt
                   Chinchilla  --cgct------------tattgctgca---gcctt
             Brush-tailed rat  --cgtt------------cactgttgcg---gcctt
                       Rabbit  --cact------------cgttgctgc---------
                         Pika  --cgctactggaggactccttctcagc---------
                          Pig  --ctcc-------------tttgctgca---gcctt
                       Alpaca  --cgcc------------gtttgctgca---gtctt
               Bactrian camel  --cgcc------------gtttgctgca---gcctt
                      Dolphin  --cgcc------------gtttgctgca---gcctt
                 Killer whale  --cgcc------------gtttgctgca---gcctt
             Tibetan antelope  --cgcc------------gtttg-ttca---gcttt
                          Cow  --cgcc------------gtttgcttca---gcttt
                        Sheep  --cgcc------------gtttgcttca---gcttt
                Domestic goat  --cgcc------------gtttgcttca---gcttt
                        Horse  --cgcc------------ttttgctgcc---a----
             White rhinoceros  --cgtc------------gtttgctgcg---a----
                          Cat  --cgcc------------gtttgttgcc---gcttc
                          Dog  --cgcc------------ctccgtttcc---gcctt
                      Ferret   ------------------------cgcg---gcctt
                        Panda  --cgcc------------gtttgtcgcc---gcctt
               Pacific walrus  --cgcc------------gtttgtcgcc---gcctt
                 Weddell seal  --cgcc------------gtttgtcgcc---gcctt
             Black flying-fox  --cgcc------------gtttgctgtc---gcctt
                      Megabat  --cgcc------------gtttgctgtc---gcctt
                Big brown bat  --tgcc------------gttcgc-ggc---gtctt
         David's myotis (bat)  --tgct------------gtttgc-ggc---atctt
                     Microbat  --tgct------------gttcgc-ggc---atctt
                     Hedgehog  --cgca------------gtctccggcc---gcctt
                        Shrew  --cgcc------------g-atgctgtc---gctgg
              Star-nosed mole  --tggg------------g-atgctgca---gcttt
                     Elephant  --cgct------------gttggctgct---gccct
          Cape elephant shrew  --agct------------gtaggcagct---gcccc
                      Manatee  --cgcg------------gtcggctgcc---gccct
             Cape golden mole  --catc------------ccaccccccc---acccc
                       Tenrec  --cgct------------gtgggcagct---gtgct
                     Aardvark  --t-tt------------gctgactgct---gcggt
                    Armadillo  --cgtc------------ctttgctgcg---gtcct
                      Opossum  --agcc------------ctaaactgct---gccag
              Tasmanian devil  --aatc--------------agacgg--------ag
                      Wallaby  --agtc------------ctaaactgct---gccag
                     Platypus  --cgcc------------c---gccgcc---gtccg
          Medium ground finch  --ccct------------ggccgccgctcccggcct
                  Zebra finch  --ccct------------ggccgccgctcccggcct
                       Parrot  --accg------------ggacagcgct---gagct
           American alligator  ggctcc------------ggctggtgca---gacct
              Green seaturtle  --tgct------------cctcactgct---tgttt
               Painted turtle  --tgct------------cctcactgct---tgttt
     Chinese softshell turtle  --tgct------------cctcactgct---ggttt
       Spiny softshell turtle  --tgct------------ccacactgct---ggttt
          Pundamilia nyererei  ====================================
          Princess of Burundi  ====================================
       Yellowbelly pufferfish  ====================================
                  Spotted gar  ====================================
                         Fugu  ====================================
     Mexican tetra (cavefish)  ====================================
                  Stickleback  ====================================
                  Zebra mbuna  ====================================
                    Zebrafish  ====================================
        Burton's mouthbreeder  ====================================
           Southern platyfish  ====================================
                      Chicken  ====================================
                 Mallard duck  ====================================
                   Budgerigar  ====================================
             Peregrine falcon  ====================================
                 Saker falcon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Lizard  ====================================
          Collared flycatcher  ====================================
           Tibetan ground jay  ====================================
       White-throated sparrow  ====================================
                   Coelacanth  ====================================

Inserts between block 19 and 20 in window
B D                    Mouse 22bp
B D                  Opossum 4bp
B D          Tasmanian devil 1bp
B D                  Wallaby 4bp
B D                 Platypus 3bp
B D      Medium ground finch 1bp
B D              Zebra finch 1bp
  D                   Parrot 1bp
B D       American alligator 1bp
  D          Green seaturtle 23bp
  D           Painted turtle 23bp
  D Chinese softshell turtle 23bp

Alignment block 20 of 956 in window, 146637106 - 146637122, 17 bps 
B D                     Human  ccccagca-------------ctc------tgg-cg--------------------g--------
B D                     Chimp  ccccagca-------------ctc------tgg-cg--------------------g--------
B D                   Gorilla  ccccagca-------------ctc------tgg-cg--------------------g--------
B D                 Orangutan  ccccagca-------------ctc------tgg-cg--------------------g--------
B D                    Gibbon  ccccagca-------------ctc------tgg-tg--------------------a--------
B D                    Rhesus  ccccagca-------------ctc------tgg-cg--------------------a--------
B D       Crab-eating macaque  ccccagca-------------ctc------tgg-cg--------------------a--------
B D                    Baboon  ccccagca-------------ctc------tgg-cg--------------------a--------
B D              Green monkey  ccccagca-------------ctc------tgg-cg--------------------a--------
B D                  Marmoset  cccaagca-------------ctc------tgg-cg--------------------a--------
B D           Squirrel monkey  cccaagca-------------ctc------tgg-cg--------------------g--------
B D                  Bushbaby  ccca---a-------------cac------tgg-tg--------------------g--------
           Chinese tree shrew  cccc-gta-------------ctc------tgg-tg--------------------a--------
B D                  Squirrel  ------------cga------att------atg-cc--------------------g--------
       Lesser Egyptian jerboa  --------------agctagcgtt------ctc-ag--------------------a--------
                 Prairie vole  ---------------------agc------cta-ag-----------------------------
B D           Chinese hamster  ---------------------ctt------ttg-cg--------------------g--------
               Golden hamster  ---------------------ctt------ttg-cg--------------------g--------
B D                       Rat  ----------------------ct------ttg-gg--------------------g--------
B D            Naked mole-rat  -cctgg----ta---------ctc------agg-ct--------------------g--------
B D                Guinea pig  -ccaag----ta---------ctt------ccg-ca--------------------g--------
                   Chinchilla  -ccaagtactta---------ctc------ccg-cg--------------------g--------
             Brush-tailed rat  -ctcag----ga---------ctc------ccg-cg--------------------g--------
B D                    Rabbit  ---------------------cgc------tgt-ct--------------------g--------
B D                      Pika  --------------------accc------tgg-cg--------------------g--------
B D                       Pig  -cctggta-------------ctc------tgg-cgac------------------a--------
B D                    Alpaca  -cctagta-------------ctc------cgg-ca--------------------a--------
               Bactrian camel  -cctagta-------------ctc------tgg-ca--------------------a--------
B D                   Dolphin  -cctagta-------------ctc------tgg-cg--------------------a--------
                 Killer whale  -cctagta-------------ctc------tgg-cg--------------------a--------
             Tibetan antelope  -cctagt---------------tt------tgg-ct--------------------a--------
B D                       Cow  -cctagt---------------tt------tgg-cg--------------------a--------
B D                     Sheep  -cctagt---------------tt------tgg-cg--------------------a--------
                Domestic goat  -cctagt---------------tt------tgg-cg--------------------a--------
B D                       Cat  -cccagtact-----------c-t------tgg-cg--------------------a--------
B D                       Dog  -ccgag-----------------------------g--------------------a--------
B D                   Ferret   -cccactgtt-----------ctt------tgg-cg--------------------a--------
B D                     Panda  -cccagtact-----------ctt------tgg-ag--------------------a--------
               Pacific walrus  -cccagtact-----------ctt------tgg-cg--------------------a--------
                 Weddell seal  -cccagtact-----------ctt------tgg-cg--------------------a--------
             Black flying-fox  -gtcag--ca-----------ctc------tgg-ag--------------------a--------
B D                   Megabat  -gtcag--cg-----------ctc------tgg-ag--------------------a--------
                Big brown bat  -cccag---------------tcc------agg-cg--------------------t--------
         David's myotis (bat)  -cccag---------------tcc------tgg-cg--------------------t--------
B D                  Microbat  -cccag---------------tcc------tgg-cg--------------------t--------
B D                  Hedgehog  -cccagga-------------ctc------cgg-tg--------------------a--------
B D                     Shrew  -ctcttca-------------ccc------aga-cg--------------------g--------
              Star-nosed mole  -c-cagca-------------ctc------ctt-cg--------------------a--------
B D                  Elephant  -cccacta-------------cgcactc--ggg-tg--------------------a--------
          Cape elephant shrew  -t-------------------ggggctc--tgg-ag--------------------a--------
B D                   Manatee  -tccagta-------------catactc--agg-ct--------------------g--------
             Cape golden mole  -cccgtcc-------------cacacacagagg-ag--------------------a--------
B D                    Tenrec  -cccggtt-------------ctc------cgg-cg--------------------a--------
                     Aardvark  -cgcagta-------------ctc------agg-cg--------------------a--------
B D                 Armadillo  -gctagaa-------------ttc------cgg-tt--------------------a--------
B D                   Opossum  --------------------cctc------agg-ag--------------------g--------
B D           Tasmanian devil  --------------------ccta------agc-tgccgccagctaagcccaggagg--------
B D                   Wallaby  --------------------cctc------agg-ag--------------------g--------
B D                  Platypus  gcccagca-------------ccc------cgg-ag--------------------c--------
B D       Medium ground finch  ---------------------tcc------ccg-cg--------------------ctgtgcccc
B D               Zebra finch  ---------------------tcc------ccg-ca--------------------ctgtccccg
  D                    Parrot  ---------------------ctg------cag-ga--------------------cgatgcctc
B D        American alligator  ---------------------ggg------aggaga--------------------cgctgctgg
  D           Green seaturtle  ---------------------ctc------caa-tg--------------------tgatgt---
  D            Painted turtle  ---------------------ctc------caa-tg--------------------tgatatcag
  D  Chinese softshell turtle  ---------------------ctc------caa-tg--------------------tgatg----
B D                     Mouse  =================================================================
B D          White rhinoceros  -----------------------------------------------------------------
B D                     Horse  -----------------------------------------------------------------
         Pundamilia nyererei  =================================================================
         Princess of Burundi  =================================================================
      Yellowbelly pufferfish  =================================================================
                 Spotted gar  =================================================================
B D                      Fugu  =================================================================
    Mexican tetra (cavefish)  =================================================================
B D               Stickleback  =================================================================
                 Zebra mbuna  =================================================================
B D                 Zebrafish  =================================================================
       Burton's mouthbreeder  =================================================================
          Southern platyfish  =================================================================
B D                   Chicken  =================================================================
  D              Mallard duck  =================================================================
B D                Budgerigar  =================================================================
  D          Peregrine falcon  =================================================================
  D              Saker falcon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
  D               Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Lizard  =================================================================
  D       Collared flycatcher  =================================================================
          Tibetan ground jay  =================================================================
  D    White-throated sparrow  =================================================================
B D                Coelacanth  =================================================================

Inserts between block 20 and 21 in window
B D                 Squirrel 5bp
B D          Chinese hamster 1bp
              Golden hamster 1bp
B D                      Rat 7bp
B D                  Opossum 6bp
B D          Tasmanian devil 6bp
B D                  Wallaby 6bp

Alignment block 21 of 956 in window, 146637123 - 146637224, 102 bps 
B D                     Human  ctcct-gaggaca--gcgg-----------------tcccatcttgaaac--------cgcta-------
B D                     Chimp  ctctt-gaggaca--gcgg-----------------tcccatcttgaaac--------cgcta-------
B D                   Gorilla  ctcct-gaggaca--gcgg-----------------tcccatcttgaaac--------cgcta-------
B D                 Orangutan  ctcct-gaggaca--gcgg-----------------tcccatcttgaaac--------cgcta-------
B D                    Gibbon  ctccg-gaggaca--gcgg-----------------tcccatcttgaaac--------cgcta-------
B D                    Rhesus  ctcct-gaggaca--gtgg-----------------tcccatcttgaaac--------cccta-------
B D       Crab-eating macaque  ctcct-gaggaca--gtgg-----------------tcccatcttgaacc--------cccta-------
B D                    Baboon  ctcct-gaggaca--gtgg-----------------tcccatcttgaacc--------cccta-------
B D              Green monkey  ctcct-gaggaca--gtgg-----------------tcccatcttgaacc--------cgcta-------
B D                  Marmoset  ctcct-gaggaca--gtgg-----------------tcccaccttgaacc--------agc---------
B D           Squirrel monkey  ctcct-gaggaca--gtgg-----------------tcccaccttgaacc--------agcta-------
B D                  Bushbaby  cttct-gaggaaa--gtgc-----------------tcccaacttcaacc--------cgcca-------
           Chinese tree shrew  ctccc-gaggaca--gagc-----------------tgccaacttga-----------------------
B D                  Squirrel  ctccc-caggaca--gctc-----------------tcccaacttgaacc--------c-----------
       Lesser Egyptian jerboa  acccc-aagcaca--gctc-----------------cggcaacttgaacc--------tgccg-------
                 Prairie vole  ---------caca--gctt-----------------tcccagcttgaacc--------cgcctg------
B D           Chinese hamster  actcg-atccaca--gcgt-----------------tcccaacttgaacc--------tgccag------
               Golden hamster  actcg-gcccaca--ctgt-----------------tcccaacttgaacc--------tgccag------
B D                     Mouse  attcc-gacgaca--gctt-----------------tcctaacttgaacc--------tgccag------
B D                       Rat  -ctcc-gaccact--gctt-----------------tcctaacttgaacc--------tgccag------
B D            Naked mole-rat  ctcct-gagtccg--acac-----------------tccctgctggagcc--------cgctg-------
B D                Guinea pig  cttcc-cgggaca--aggc-----------------tccctgctggagct--------ccctg-------
                   Chinchilla  ctcct-gaggaca--acgc-----------------tccctgctggagca--------cgctg-------
             Brush-tailed rat  caccg-gaggaca--acgc-----------------tccctgctggagcc--------ctctg-------
B D                    Rabbit  ctctc-taggaca--gcgc-----------------tcccaacttgaacg--------tgccc-------
B D                      Pika  ctcta-gcagaca--gcgc-----------------tcctaacttgcacg--------cgccc-------
B D                       Pig  ctcct-gaggact--atgc-----------------tcccgacttgaacc--------tgcca-------
B D                    Alpaca  ctccc-gaggacc--gtgc-----------------tcccgacttgaacc--------tgccc-------
               Bactrian camel  ctccc-gaggacc--gtgc-----------------tcccgacttgaacc--------tgccc-------
B D                   Dolphin  ctccc-gaggact--gagc-----------------tcccgacttgaacc--------tgcca-------
                 Killer whale  ctccc-gaggact--gagc-----------------tcccgacttgaacc--------tgcca-------
             Tibetan antelope  ctccc-gaggact--gagc-----------------tcccgacttgaacc--------tggta-------
B D                       Cow  ctccc-gaggact--gagc-----------------tcccgacttgaacc--------tgcta-------
B D                     Sheep  ctccc-gaggact--gagc-----------------tcccgacttgaacc--------tggta-------
                Domestic goat  ctccc-gaggact--gagc-----------------tcccgacttgaacc--------tggta-------
B D                     Horse  -------aggact--gtgc-----------------tcccaacttgaacc--------tgcgg-------
B D          White rhinoceros  -------aggact--gtgc-----------------tcccaacttgaacc--------tgccg-------
B D                       Cat  ctcgc-gggctct--gagc-----------------tcccgacttgaacc--------tgctg-------
B D                       Dog  ctccg-ggggact--gtgc-----------------tcccaacttgaacc--------tgcca-------
B D                   Ferret   ctccg-gagcact--gtgc-----------------tcccaacttgaacc--------agcca-------
B D                     Panda  ctccc-tgggact--gtgc-----------------tcccaacttgaacc--------tacca-------
               Pacific walrus  ctccc-ggggact--gtgc-----------------tcccaacttgaacc--------tgcca-------
                 Weddell seal  ctccc-ggggact--gtgc-----------------tcccaacttgaacc--------tgcca-------
             Black flying-fox  cttgc-ggggact--gtgc-----------------tcccaacttgaacc--------tgccg-------
B D                   Megabat  cttgc-ggggact--gtgc-----------------tcccaacttgaacc--------tgccg-------
                Big brown bat  gtagc-aaggtct--gtgc-----------------tcccaatttgaacc--------tg----------
         David's myotis (bat)  gtact-aaggtct--atgct----------------tcccaaattgaact--------tggcg-------
B D                  Microbat  gtagc-aaagtct--atgc-----------------tcccaatttgaacc--------tggcg-------
B D                  Hedgehog  ctccc-tacgacc--ttgc-----------------tcacaacttgaacc--------agcag-------
B D                     Shrew  ctccg-aggacca-----t-----------------tcccaacttgaacc--------tgcag-------
              Star-nosed mole  ctccg-gggaaca--gtgc-----------------tcagaaactgagct--------tgcca-------
B D                  Elephant  ctccc-tagggca--gcgc-----------------tcctaacttgaacc--------cgccg-------
          Cape elephant shrew  ctcttatcaacca--gctc-----------------tcgcaacttgaatg--------ggcta-------
B D                   Manatee  cttcc-taggaca--gcgc-----------------ttctaacttgaact--------cgcca-------
             Cape golden mole  cttcc-taggacattgccc-----------------tcctaacttgaacc--------cgcta-------
B D                    Tenrec  ctccg-gaggacacagcgc-----------------tcccgacttgaacc--------tg----------
                     Aardvark  ctccc-tagaaca--acgc-----------------tcccaagttgaacc--------cgcca-------
B D                 Armadillo  ctcgc-aaagaca--gcgc-----------------tcccaacttgaacc--------cgcca-------
B D                   Opossum  taccg-ctttact--aggg-----------------acga------aact--------t-----------
B D           Tasmanian devil  ccccc-gcttact--gggg-----------------accaaactttaacc--------ggccctgggcga
B D                   Wallaby  cttcg-gcttatt--gggg-----------------acgaaactttaacc--------tgttctggtcga
B D                  Platypus  ----------------------------------------------------------------------
B D       Medium ground finch  -------------------cgcatcccccg-------cccctgcggtgccagagcagcggcgg-------
B D               Zebra finch  -------------------cgcagcgcccggcgcatcccccgcccctgcc--------------------
  D                    Parrot  -------------------cagct-------------ccccgcctgtggg--------gaggg-------
B D        American alligator  -------------------ctgctggagttgggtcagccccccctccccc--------------------
  D           Green seaturtle  -------------------------------------------cagtgct--------agaag-------
  D            Painted turtle  -------------------tcctaaaagtcctgg---tgtctccagaggg--------agcag-------
  D  Chinese softshell turtle  -------------------------------------------cagtgct--------aaaag-------
         Pundamilia nyererei  ======================================================================
         Princess of Burundi  ======================================================================
      Yellowbelly pufferfish  ======================================================================
                 Spotted gar  ======================================================================
B D                      Fugu  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D               Stickleback  ======================================================================
                 Zebra mbuna  ======================================================================
B D                 Zebrafish  ======================================================================
       Burton's mouthbreeder  ======================================================================
          Southern platyfish  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
B D                Budgerigar  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
  D               Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Lizard  ======================================================================
  D       Collared flycatcher  ======================================================================
          Tibetan ground jay  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                Coelacanth  ======================================================================

                        Human  ------------------------------------ttccg--------------------ccc------
                        Chimp  ------------------------------------ttccg--------------------ccc------
                      Gorilla  ------------------------------------ttccg--------------------ccc------
                    Orangutan  ------------------------------------ttccg--------------------ccc------
                       Gibbon  ------------------------------------ttccg--------------------tcc------
                       Rhesus  ------------------------------------ttctg--------------------ccc------
          Crab-eating macaque  ------------------------------------ttctg--------------------ccc------
                       Baboon  ------------------------------------ttctg--------------------ccc------
                 Green monkey  ------------------------------------ttctg--------------------cct------
                     Marmoset  ------------------------------------tccct--------------------ccc------
              Squirrel monkey  ------------------------------------tcccg--------------------ctc------
                     Bushbaby  ------------------------------------tccct--------------------tcc------
           Chinese tree shrew  ------------------------------------tccct--------------------ctg------
                     Squirrel  -----------------------------------ttcccg--------------------ctc------
       Lesser Egyptian jerboa  ------------------------------------tcctg--------------------cct------
                 Prairie vole  -----------------------------------ctctgg--------------------cca------
              Chinese hamster  -----------------------------------ctccgg--------------------cct------
               Golden hamster  -----------------------------------ctccgg--------------------cct------
                        Mouse  -----------------------------------ccccgg--------------------cct------
                          Rat  -----------------------------------ccttag--------------------cct------
               Naked mole-rat  ------------------------------------tcccg--------------------cct------
                   Guinea pig  ------------------------------------tccag--------------------tcc------
                   Chinchilla  ------------------------------------tcccg--------------------ccc------
             Brush-tailed rat  ------------------------------------tccgg--------------------ccc------
                       Rabbit  ------------------------------------tcccg--------------------ccc------
                         Pika  ------------------------------------tccca--------------------ccc------
                          Pig  ------------------------------------tcccg--------------------ccc------
                       Alpaca  ------------------------------------tcccg--------------------ccc------
               Bactrian camel  ------------------------------------tcccg--------------------ccc------
                      Dolphin  ------------------------------------tctcg--------------------ccc------
                 Killer whale  ------------------------------------tctcg--------------------ccc------
             Tibetan antelope  ------------------------------------tcctg--------------------ccc------
                          Cow  ------------------------------------tcctg--------------------ccc------
                        Sheep  ------------------------------------t--tg--------------------ccc------
                Domestic goat  ------------------------------------tcctg--------------------ccc------
                        Horse  ------------------------------------tcccg--------------------cct------
             White rhinoceros  ------------------------------------tccag--------------------cct------
                          Cat  ------------------------------------tccag--------------------ctc------
                          Dog  ------------------------------------tcccg--------------------ctc------
                      Ferret   ------------------------------------tgcca--------------------gtc------
                        Panda  ------------------------------------tcccg--------------------ctc------
               Pacific walrus  ------------------------------------tcccg--------------------ctc------
                 Weddell seal  ------------------------------------tcccg--------------------ctc------
             Black flying-fox  ------------------------------------tccca--------------------ctc------
                      Megabat  ------------------------------------tccca--------------------ctc------
                Big brown bat  --------------------------------------ccg--------------------tcc------
         David's myotis (bat)  ------------------------------------tcccg--------------------ccc------
                     Microbat  ------------------------------------tcccg--------------------ccc------
                     Hedgehog  ------------------------------------ccccgccccgccccgccccgccccgccc------
                        Shrew  ------------------------------------tcccg--------------------ccc------
              Star-nosed mole  ------------------------------------tcccg---------------------ct------
                     Elephant  ------------------------------------tcctt-----------------------------
          Cape elephant shrew  ------------------------------------acctt-----------------------------
                      Manatee  ------------------------------------tcctc-----------------------------
             Cape golden mole  ------------------------------------tcctt-----------------------------
                       Tenrec  ------------------------------------tcagg-----------------------------
                     Aardvark  ------------------------------------tcctt-----------------------------
                    Armadillo  ------------------------------------tccct-----------------------------
                      Opossum  -----------------------------aagctcgccttg--------------------ctc------
              Tasmanian devil  gagcggggagaaaagacgtcggggctgagaagct------g--------------------ctt------
                      Wallaby  gagagatgggaatagacagtgggtctgaaaagctctgctct--------------------cct------
                     Platypus  ------------------------------------ccccg--------------------gtcaagagc
          Medium ground finch  ---------------------------------------------------------gacactc------
                  Zebra finch  ----------------------------------------------------------gccctc------
                       Parrot  ---------------------------------------------------------gggacac------
           American alligator  -------------------------------------------------------------ctc------
              Green seaturtle  ------------------------------------tcctg----------------gtgtctt------
               Painted turtle  -------------------------------------catg----------------gggccct------
     Chinese softshell turtle  ------------------------------------tcctt----------------gtttctc------
          Pundamilia nyererei  ======================================================================
          Princess of Burundi  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                  Spotted gar  ======================================================================
                         Fugu  ======================================================================
     Mexican tetra (cavefish)  ======================================================================
                  Stickleback  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
        Burton's mouthbreeder  ======================================================================
           Southern platyfish  ======================================================================
                      Chicken  ======================================================================
                 Mallard duck  ======================================================================
                   Budgerigar  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Lizard  ======================================================================
          Collared flycatcher  ======================================================================
           Tibetan ground jay  ======================================================================
       White-throated sparrow  ======================================================================
                   Coelacanth  ======================================================================

                        Human  -ggc--tgag---g-----------------------------------------tca----ggggtg--
                        Chimp  -ggc--tgag---g-----------------------------------------tca----ggggtg--
                      Gorilla  -ggc--tgag---g-----------------------------------------tca----ggggtg--
                    Orangutan  -ggc--tgag---g-----------------------------------------tca----ggggtg--
                       Gibbon  -ggc--tgag---g-----------------------------------------tca----ggggtg--
                       Rhesus  -ggt--tgag---g-----------------------------------------tca----ggggtg--
          Crab-eating macaque  -ggt--tgag---g-----------------------------------------tca----ggggtg--
                       Baboon  -ggt--tgag---g-----------------------------------------tca----ggggtg--
                 Green monkey  -ggt--tgag---g-----------------------------------------tca----ggggtg--
                     Marmoset  -ggc--tgag---t-----------------------------------------tct----ggggtg--
              Squirrel monkey  -ggc--tgag---g-----------------------------------------tca----ggggtg--
                     Bushbaby  -agc--tgag---g-----------------------------------------tca---gggggtg--
           Chinese tree shrew  -agc--tgag---g-----------------------------------------tta----ggggtg--
                     Squirrel  -aac--cgag---g-----------------------------------------tta----ggggcg--
       Lesser Egyptian jerboa  -gga--tgag---g-----------------------------------------tca----agggtg--
                 Prairie vole  -gga--cgag---g-----------------------------------------tca----agagag--
              Chinese hamster  -gga--tgag---g----------------ttga---------------------tca----aggaaa--
               Golden hamster  -gga--cgag---g----------------tcga---------------------tca----tgggag--
                        Mouse  -gga--tgag---g-----------------------------------------tca----ggggag--
                          Rat  -gga--tgag---g-----------------------------------------tca----ggggag--
               Naked mole-rat  -agc--tgag---g-----------------------------------------tca----ggggtg--
                   Guinea pig  -agc--tgag---g-----------------------------------------tca----ggggtg--
                   Chinchilla  -agc--tgag---g-----------------------------------------tca----ggggtg--
             Brush-tailed rat  -agc--tgag---g-----------------------------------------tca----cgggta--
                       Rabbit  -tgc--tgag---g-----------------------------------------tca----gggatg--
                         Pika  -tgc--tgag---g-----------------------------------------tca----gggatg--
                          Pig  -tgc--cggg---g-----------------------------------------tca----tgggtg--
                       Alpaca  -cgc--gggg---g-----------------------------------------tca----tgggcg--
               Bactrian camel  -cgc--gggg---g-----------------------------------------tca----tgggct--
                      Dolphin  -cgc--aggg---g-----------------------------------------tcg----tgggtg--
                 Killer whale  -cgc--aggg---g-----------------------------------------tcg----tgggtg--
             Tibetan antelope  -cgg--agag---g-----------------------------------------tca----tgggtg--
                          Cow  -cgc--agag---g-----------------------------------------tca----tgggtg--
                        Sheep  -cgc--agaa---g-----------------------------------------tca----tgggtg--
                Domestic goat  -cgc--agag---g-----------------------------------------tca----tgggtg--
                        Horse  -ggc--tgag---g-----------------------------------------tca----tgggtg--
             White rhinoceros  -ggc--tgag---g-----------------------------------------tca----tgggtg--
                          Cat  -tgg--tgag---g-----------------------------------------tca----tgggtg--
                          Dog  -cgt--tgag---g-----------------------------------------tta----ggggtg--
                      Ferret   -ggt--tgag---g-----------------------------------------tca----tgggtg--
                        Panda  -tgt--tgag---g-----------------------------------------tca----tgggtg--
               Pacific walrus  -cgt--tgag---g-----------------------------------------tca----tgggtg--
                 Weddell seal  -cat--tgag---g-----------------------------------------tca----tgggtg--
             Black flying-fox  -tgc--ggag---g-----------------------------------------tca----ggggtg--
                      Megabat  -tgc--ggag---g-----------------------------------------tca----ggggtg--
                Big brown bat  -cgc--tgag---g-----------------------------------------tca----ggggcc--
         David's myotis (bat)  -cgt--tgag---g-----------------------------------------tca----ggggtc--
                     Microbat  -cgc--tgag---g-----------------------------------------tca----ggggtc--
                     Hedgehog  -cgt--cggg---g-----------------------------------------tcc----cgggtg--
                        Shrew  -cgc--cgag---g-----------------------------------------tcc----c--gca--
              Star-nosed mole  -cgg--tgag---g-----------------------------------------tcc----tcggtg--
                     Elephant  -------gag---g-----------------------------------------tca----gggacg--
          Cape elephant shrew  -------gac---g-----------------------------------------tta----ggaatg--
                      Manatee  -------gag---g-----------------------------------------tca----gggacc--
             Cape golden mole  -------gag---g-----------------------------------------aca----gggatg--
                       Tenrec  -------gaa---g-----------------------------------------cca----gggaag--
                     Aardvark  -------gag---g-----------------------------------------ata----ggaagc--
                    Armadillo  -------aag---g-----------------------------------------tca----gggctg--
                      Opossum  -agg--agag---gtgggtgggaaaggacgtcggggatgaaaaactatgctcttagcc----aaggct--
              Tasmanian devil  -cag--cgag---g-gctctgtccagcactccaggag------------------gca----cggggg--
                      Wallaby  -taa--ccag---g-gctcaatcctgcactccgggag------------------gcc----caggag--
                     Platypus  gagg--tgag---g-----------------------------------------acg----gggtgg--
          Medium ground finch  -tggctgtag---g-----------------------------------------tgcgtgctgagcc--
                  Zebra finch  -cgg--agcg---g-----------------------------------------tgc---cagagca--
                       Parrot  -cag--aagg---g-----------------------------------------aga---cattccc--
           American alligator  -cagctgcag---c-----------------------------------------tgg-----gaggc--
              Green seaturtle  -cag--aggg---a-----------------------------------------gcagcatggggcc--
               Painted turtle  -tat--ggagcctc-----------------------------------------atgataaagggctgc
     Chinese softshell turtle  -cag--agca---a-----------------------------------------gtagcatggggca--
          Pundamilia nyererei  ======================================================================
          Princess of Burundi  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                  Spotted gar  ======================================================================
                         Fugu  ======================================================================
     Mexican tetra (cavefish)  ======================================================================
                  Stickleback  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
        Burton's mouthbreeder  ======================================================================
           Southern platyfish  ======================================================================
                      Chicken  ======================================================================
                 Mallard duck  ======================================================================
                   Budgerigar  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Lizard  ======================================================================
          Collared flycatcher  ======================================================================
           Tibetan ground jay  ======================================================================
       White-throated sparrow  ======================================================================
                   Coelacanth  ======================================================================

                        Human  -----g----ac----------ag-gc------------------gg-tcccc-----------------
                        Chimp  -----g----ac----------ag-gc------------------gg-tcccc-----------------
                      Gorilla  -----g----ac----------ag-gc------------------gg-tcccc-----------------
                    Orangutan  -----g----ac----------ag-gc------------------gg-tcccc-----------------
                       Gibbon  -----g----ac----------ag-gc------------------gg-tcccc-----------------
                       Rhesus  -----g----ag----------ag-gc------------------gg-tcccc-----------------
          Crab-eating macaque  -----g----ag----------ag-gc------------------gg-tcccc-----------------
                       Baboon  -----g----ag----------ag-gc------------------gg-tcccc-----------------
                 Green monkey  -----g----ag----------cg-gc------------------gg-tcccc-----------------
                     Marmoset  -----g----ac----------ag-gc------------------ag-tcccc-----------------
              Squirrel monkey  -----g----ac----------ag-gc------------------gg-tcccc-----------------
                     Bushbaby  -----g----ac----------ag-ga------------------gg-tcccc-----------------
           Chinese tree shrew  -----g----ac----------ag-gc------------------gg-gtccc-----------------
                     Squirrel  -----g----ac----------ag-ac------------------ac-ctccc-----------------
       Lesser Egyptian jerboa  -----g----tc----------cg-gc------------------gg-tccccgat--------------
                 Prairie vole  -----a----ac----------tg-gc------------------gg-ttccc-----------------
              Chinese hamster  -----g----ac----------tg-gc------------------gg-ttccc-----------------
               Golden hamster  -----g----gc----------tg-gc------------------gg-ttccc-----------------
                        Mouse  -----g----at----------cc-ac------------------gg-tttcc-----------------
                          Rat  -----g----at----------cc-gc------------------gg-tttcc-----------------
               Naked mole-rat  -----g----ac----------cc-g-------------------gg-gcccc-----------------
                   Guinea pig  -----g----cc----------cc-gc------------------ag-tccac-----------------
                   Chinchilla  -----g----ac----------ta-ga------------------ag-acccc-----------------
             Brush-tailed rat  -----g----ac----------cg-gc------------------ag-ccccc-----------------
                       Rabbit  -----ggagcac----------ag-gc------------------gg-ccctc-----------------
                         Pika  -----g----ac----------ag-gc------------------ga-ccctc-----------------
                          Pig  -----a----ac----------ga-gc------------------ga-ccctc-----------------
                       Alpaca  -----a----ac----------ag-gc------------------gg-ccccc-----------------
               Bactrian camel  -----a----ac----------ag-gc------------------gg-ccctc-----------------
                      Dolphin  -----a----ac----------ga-ga------------------gacccccc-----------------
                 Killer whale  -----a----ac----------ga-ga------------------ga-ccccc-----------------
             Tibetan antelope  -----a----ac----------ga-ga------------------ga-ccccg-----------------
                          Cow  -----a----ac----------ga-ga------------------ga-ccccc-----------------
                        Sheep  -----a----ac----------ga-ga------------------ga-ccccc-----------------
                Domestic goat  -----a----ac----------ga-ga------------------ga-ccccc-----------------
                        Horse  -----a----ac----------ag-gc------------------ag-tccca-----------------
             White rhinoceros  -----a----ac----------ag-gc------------------ag-tcccc-----------------
                          Cat  -----a----ac----------cg-gc------------------ag-gccca-----------------
                          Dog  -----a----ac----------cg-gc------------------gg-ccccc-----------------
                      Ferret   -----a----ac----------c--gc------------------gg-ccccc-----------------
                        Panda  -----a----ac----------cg-gc------------------gg-ctccc-----------------
               Pacific walrus  -----a----ac----------cg-gc------------------gg-tcccc-----------------
                 Weddell seal  -----a----ac----------cg-gc------------------gg-ccccc-----------------
             Black flying-fox  -----a----ac----------gg-gc------------------gg-cctcc-----------------
                      Megabat  -----a----ac----------gg-gc------------------gg-cctcc-----------------
                Big brown bat  -----a----ac----------cg-gc------------------gg-ccccc-----------------
         David's myotis (bat)  -----a----ac----------cg-gc------------------at-ccccc-----------------
                     Microbat  -----a----ac----------cg-gc------------------gg-ccccc-----------------
                     Hedgehog  -----a----aa----------gg-gc------------------ag-----------------------
                        Shrew  -----c----gc----------cc-cg------------------ga-gccct-----------------
              Star-nosed mole  -----a----ac----------ct-gc------------------gg-ccccc-----------------
                     Elephant  -----a----ac----------accac------------------ga-acccc-----------------
          Cape elephant shrew  -----c----at----------agcct------------------ag-ccttc-----------------
                      Manatee  -----a----ac----------agcac------------------aa-ccctc-----------------
             Cape golden mole  -----g----ag----------aacac------------------ga-cactc-----------------
                       Tenrec  -----g----aa----------agcac----------------tgga-ccctctgtccccctttaatccc
                     Aardvark  -----a----ag----------atccc------------------cc-ccccc-----------------
                    Armadillo  -----g----ac----------aacga------------------gg-cccct-----------------
                      Opossum  -----c----agccctgtgctccg-ggaggcacaggaggagactggg-acccg-----------------
              Tasmanian devil  -----g----ag----------tg-gg------------------gg-accgg-----------------
                      Wallaby  -----g----ag----------tg-gg------------------gg-accag-----------------
                     Platypus  -----g----------------gg-gc------------------gg-gcccg-----------------
          Medium ground finch  -----c----gg----------ac-gg------------------ga-ctttt-----------------
                  Zebra finch  -----g----cg----------gc-gg------------------ga-cactc-----------------
                       Parrot  -----g----gg----------cc-gc------------------ct-ctccc-----------------
           American alligator  -----g----gt----------gg-gg------------------ga-agccc-----------------
              Green seaturtle  -----c----tt----------at-gg------------------ag-cctca-----------------
               Painted turtle  aacaac----at----------at-gg-------------------------------------------
     Chinese softshell turtle  -----g----tt----------at-gg------------------ag-cctca-----------------
          Pundamilia nyererei  ======================================================================
          Princess of Burundi  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                  Spotted gar  ======================================================================
                         Fugu  ======================================================================
     Mexican tetra (cavefish)  ======================================================================
                  Stickleback  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
        Burton's mouthbreeder  ======================================================================
           Southern platyfish  ======================================================================
                      Chicken  ======================================================================
                 Mallard duck  ======================================================================
                   Budgerigar  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Lizard  ======================================================================
          Collared flycatcher  ======================================================================
           Tibetan ground jay  ======================================================================
       White-throated sparrow  ======================================================================
                   Coelacanth  ======================================================================

                        Human  ----t-------------------act--------------------------------c------tcc-
                        Chimp  ----t-------------------act--------------------------------c------tcc-
                      Gorilla  ----t-------------------act--------------------------------c------tcc-
                    Orangutan  ----t-------------------act--------------------------------c------tcc-
                       Gibbon  ----t-------------------act--------------------------------c------tcc-
                       Rhesus  ----t-------------------act--------------------------------c------tcc-
          Crab-eating macaque  ----t-------------------act--------------------------------c------tcc-
                       Baboon  ----t-------------------act--------------------------------c------tcc-
                 Green monkey  ----t-------------------act--------------------------------c------tcc-
                     Marmoset  ----t-------------------aat--------------------------------c------tcc-
              Squirrel monkey  ----t-------------------aat--------------------------------c------tcc-
                     Bushbaby  ----t-------------------act--------------------------------tgctgtggcc-
           Chinese tree shrew  ----t-------------------acttgtcgtgtttttttgggcgcccccctcctggcc------gcc-
                     Squirrel  ----g-------------------att--------------------------------c------gccg
       Lesser Egyptian jerboa  ----t-------------------gct--------------------------------g------gccg
                 Prairie vole  ----t-------------------act--------------------------------c------gccg
              Chinese hamster  ----t-------------------tct--------------------------------c------gccg
               Golden hamster  ----t-------------------act--------------------------------c------gccg
                        Mouse  ----t-------------------gtt--------------------------------c------gccg
                          Rat  ----t-------------------gct--------------------------------c------gccg
               Naked mole-rat  ----t-------------------gtt--------------------------------a------gcc-
                   Guinea pig  ----t-------------------att--------------------------------a------ggcg
                   Chinchilla  ----t-------------------att--------------------------------a------gccg
             Brush-tailed rat  ----t-------------------att--------------------------------a------gcta
                       Rabbit  ----t-------------------gtc--------------------------------t------gcgg
                         Pika  ----t-------------------act--------------------------------t------gcag
                          Pig  ----t-------------------act--------------------------------t------gcc-
                       Alpaca  ----t-------------------act--------------------------------t------gcc-
               Bactrian camel  ----t-------------------act--------------------------------t------gcc-
                      Dolphin  ----t-------------------act--------------------------------t------gcc-
                 Killer whale  ----t-------------------act--------------------------------t------gcc-
             Tibetan antelope  ----t-------------------gct--------------------------------t------gcc-
                          Cow  ----t-------------------act--------------------------------t------gcc-
                        Sheep  ----t-------------------acg--------------------------------t------gcc-
                Domestic goat  ----t-------------------act--------------------------------t------gcc-
                        Horse  ----t-------------------act--------------------------------c------gct-
             White rhinoceros  ----t-------------------ac--------------------------------------------
                          Cat  ----t-------------------act--------------------------------c------tct-
                          Dog  ----c-------------------acc--------------------------------c------tct-
                      Ferret   ----t-------------------gct--------------------------------c------tct-
                        Panda  ----t-------------------act--------------------------------c------tct-
               Pacific walrus  ----t-------------------act--------------------------------c------tct-
                 Weddell seal  ----t-------------------act--------------------------------c------cct-
             Black flying-fox  ----t-------------------act--------------------------------c------gct-
                      Megabat  ----t-------------------act--------------------------------c------gcg-
                Big brown bat  ----t-------------------tct--------------------------------t------gct-
         David's myotis (bat)  ----t-------------------tct--------------------------------t------gct-
                     Microbat  ----t-------------------tct--------------------------------t------gct-
                     Hedgehog  -------------------------ct--------------------------------g------ccg-
                        Shrew  ----t-------------------act--------------------------------c------ccg-
              Star-nosed mole  ----t-------------------act--------------------------------c------cct-
                     Elephant  ----c-------------------act--------------------------------c------gtgg
          Cape elephant shrew  ----c-------------------act--------------------------------c------gcag
                      Manatee  ----c-------------------act--------------------------------c------gcgg
             Cape golden mole  ----c-c---------------caact--------------------------------c------gcgg
                       Tenrec  cccgc-c---------------cacct--------------------------------t------gagc
                     Aardvark  ----c-cccccccccccacacacaact--------------------------------c------gcgg
                    Armadillo  ----t-------------------act--------------------------------c------gccg
                      Opossum  ----a-------------------cct--------------------------------c------gtc-
              Tasmanian devil  ----c-------------------ccc--------------------------------c------gcc-
                      Wallaby  ----a-------------------cct--------------------------------c------tcc-
                     Platypus  ----g-------------------ggc--------------------------------c------g---
          Medium ground finch  ----ttcccccgtttttaaaatttatttttcctttc-----------------------c------atg-
                  Zebra finch  ----t-----------------------------------------------------------------
                       Parrot  ----t-------------------gtcttcccctccgccgct-----------------c------ccc-
           American alligator  ----c-------------------gcggtctcca-------------------------a------agg-
              Green seaturtle  ----t-------------------gat--------------------------------a------acg-
               Painted turtle  ------------------------gaa--------------------------------a------gca-
     Chinese softshell turtle  ----t-------------------gat--------------------------------a------aag-
          Pundamilia nyererei  ======================================================================
          Princess of Burundi  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                  Spotted gar  ======================================================================
                         Fugu  ======================================================================
     Mexican tetra (cavefish)  ======================================================================
                  Stickleback  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
        Burton's mouthbreeder  ======================================================================
           Southern platyfish  ======================================================================
                      Chicken  ======================================================================
                 Mallard duck  ======================================================================
                   Budgerigar  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Lizard  ======================================================================
          Collared flycatcher  ======================================================================
           Tibetan ground jay  ======================================================================
       White-throated sparrow  ======================================================================
                   Coelacanth  ======================================================================

                        Human  --accgcc-----g--------c-----------ttccgggagctg
                        Chimp  --accgcc-----g--------c-----------ttccgggagctg
                      Gorilla  --accgcc-----g--------c-----------ttccgggagctg
                    Orangutan  --accgcc-----g--------c-----------ttccgggagctg
                       Gibbon  --accgcc-----g--------c-----------ttccgggagctg
                       Rhesus  --accgcc-----g--------c-----------ttccgggagctg
          Crab-eating macaque  --accgcc-----g--------c-----------ttccgggagctg
                       Baboon  --accgcc-----g--------c-----------ttccgggagctg
                 Green monkey  --accacc-----g--------c-----------ttccgggagctg
                     Marmoset  --accccc-----g--------c-----------ttccggacgctg
              Squirrel monkey  --accccc-----g--------c-----------ttccggacgctg
                     Bushbaby  --gccgcctcgggg--------c-----------ttccgggctctg
           Chinese tree shrew  --cccgcc-----gctactggac-----------ttccaggagcta
                     Squirrel  ctaccgcc-----g--------c------ggggcttccgtgtgctg
       Lesser Egyptian jerboa  ctactgcc-----g--------c------ggggcttccgggtgctg
                 Prairie vole  cta--gcc-----g--------c------agggcttccgggtgctg
              Chinese hamster  ctaccgcc-----g--------c------agggcttccgggtgctg
               Golden hamster  ctaccgcc-----g--------c------agggcttccgggtgctg
                        Mouse  ctaccgcc-----g--------c------agggcttccgggtgctg
                          Rat  ctaccgcc-----g--------c------agggcttccgggtgctg
               Naked mole-rat  --gccgcc-----g--------c------ggggcttccggatgctg
                   Guinea pig  ttgccgct-----g--------c------ggggcttcagggtgctg
                   Chinchilla  ctgccacc-----g--------c------ggtgcttcagggtgctg
             Brush-tailed rat  ctgccgcc-----g--------c------ggggctccaggatgctg
                       Rabbit  ccgtcgca-----g--------cag----ggggcttccgcgtgctg
                         Pika  ccgtcaca-----g--------ccgc---ggggcttctgcaagctg
                          Pig  --gccgcc-----g--------c------ggggcttccaggcgctg
                       Alpaca  --gcctcc-----g--------g------ggggcttccaggcgctg
               Bactrian camel  --gcctcc-----g--------g------ggggcttccaggcgctg
                      Dolphin  --gccgcc-----g--------c------ggggcttccaggcgctg
                 Killer whale  --gccgcc-----g--------c------ggggcttccaggcgctg
             Tibetan antelope  --actgcc-----a--------c------agggcttccaggcgcca
                          Cow  --actgcc-----g--------c------agggcttccaggcgcca
                        Sheep  --actgcc-----a--------c------agggcttccaggcgcca
                Domestic goat  --actgcc-----a--------c------agggcttccaggcgcca
                        Horse  --gccgcc-----g--------c------ggggcttccgggcgctg
             White rhinoceros  --agcgcc-----g--------c------ggggcttccgggcgctg
                          Cat  --gccgcc-----g--------c------ggggcttccgggcgctg
                          Dog  ---ccgcc-----g--------c------ggggcttccgggcgctg
                      Ferret   --gcaacc-----t--------c------ggggcttccgggcccag
                        Panda  --gccgcc-----g--------c------ggggcttccgggcgctg
               Pacific walrus  --gccgcc-----g--------c------ggggcttctggccgctg
                 Weddell seal  --gccgcc-----g--------c------ggggcttccggccgctg
             Black flying-fox  --gctgcc----------------------------------gctg
                      Megabat  --gctgcc----------------------------------gctg
                Big brown bat  --gctgcc-----g--------c------agggcttccgggtgctg
         David's myotis (bat)  --gctgcc-----g--------c------ggggcttccgggtgctg
                     Microbat  --gctgcc-----g--------c------ggggcttccgggtgctg
                     Hedgehog  --gccgcc-----g--------c------ggggctg-ggggcgcgg
                        Shrew  --g-cgcc-----g--------c------ggggcttcggggcgctg
              Star-nosed mole  --gccgcc-----t--------c------gggacttcagggcgctg
                     Elephant  ccgccgcc-----g--------c------agggctgccgggcactg
          Cape elephant shrew  gcgccacc-----a--------c------agggttgcctaacactg
                      Manatee  ccgccgcc-----g--------c------agggctgccgggcgctg
             Cape golden mole  cca-----------------------------------gggcgttg
                       Tenrec  tcagcgtc--------------t------aggactgctgggtgctg
                     Aardvark  cccctgcc-----t--------c------agggctgcctggtgctg
                    Armadillo  ccgccgcc-----g--------ccgctgtggggcttccgggcgctg
                      Opossum  ----tgct-----c--------c-----------ttcagggtg---
              Tasmanian devil  ----tgct-----c--------c-----------tccggggtgcgt
                      Wallaby  ----tgct-----c--------c-----------tccagggtgcgt
                     Platypus  --gccggc-----g--------c------ggcccctccgtctctcg
          Medium ground finch  --gaaggt-----g--------------------------------
                  Zebra finch  --ggctgt-----a--------------------------------
                       Parrot  --ggagct-----g--------------------------------
           American alligator  --ggaggc-----a--------------------------------
              Green seaturtle  --ggctgc-----a--------------------------------
               Painted turtle  --gggtg---------------------------------------
     Chinese softshell turtle  --gactgt-----a--------------------------------
          Pundamilia nyererei  ==============================================
          Princess of Burundi  ==============================================
       Yellowbelly pufferfish  ==============================================
                  Spotted gar  ==============================================
                         Fugu  ==============================================
     Mexican tetra (cavefish)  ==============================================
                  Stickleback  ==============================================
                  Zebra mbuna  ==============================================
                    Zebrafish  ==============================================
        Burton's mouthbreeder  ==============================================
           Southern platyfish  ==============================================
                      Chicken  ==============================================
                 Mallard duck  ==============================================
                   Budgerigar  ==============================================
             Peregrine falcon  ==============================================
                 Saker falcon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                       Lizard  ==============================================
          Collared flycatcher  ==============================================
           Tibetan ground jay  ==============================================
       White-throated sparrow  ==============================================
                   Coelacanth  ==============================================

Inserts between block 21 and 22 in window
B D      Medium ground finch 12bp
B D              Zebra finch 13bp
B D       American alligator 10bp
  D          Green seaturtle 15bp
  D           Painted turtle 10bp
  D Chinese softshell turtle 15bp

Alignment block 22 of 956 in window, 146637225 - 146637233, 9 bps 
B D                     Human  a-----ccacccga
B D                     Chimp  a-----ccacccga
B D                   Gorilla  a-----ccacccga
B D                 Orangutan  a-----ccacccga
B D                    Gibbon  a-----ccacccga
B D                    Rhesus  a-----ccacccga
B D       Crab-eating macaque  a-----ccacccga
B D                    Baboon  a-----ccacccga
B D              Green monkey  a-----ccacccga
B D                  Marmoset  a-----ccacccga
B D           Squirrel monkey  a-----ccacccta
B D                  Bushbaby  a-----ccacccga
           Chinese tree shrew  a-----ctgcccga
B D                  Squirrel  a-----ccacccga
       Lesser Egyptian jerboa  a-----ccatccgg
                 Prairie vole  a-----ctcccaga
B D           Chinese hamster  a-----ctcccaga
               Golden hamster  a-----ctcccaga
B D                     Mouse  a-----ctcccaga
B D                       Rat  a-----ctcccgga
B D            Naked mole-rat  accaccccacccga
B D                Guinea pig  a-----gcacccta
                   Chinchilla  a-----ccacccga
             Brush-tailed rat  a-----ccactcga
B D                    Rabbit  t-----ccaccgga
B D                      Pika  a-----ccacccga
B D                       Pig  a-----ccactcga
B D                    Alpaca  a-----ccactcga
               Bactrian camel  a-----ccactcta
B D                   Dolphin  a-----ccactcga
                 Killer whale  a-----ccactcga
             Tibetan antelope  a-----ccactcga
B D                       Cow  g-----ccactcga
B D                     Sheep  a-----ccactcga
                Domestic goat  a-----ccgctcga
B D                     Horse  a-----ccactcga
B D          White rhinoceros  a-----ccactcga
B D                       Cat  a-----ccattcga
B D                       Dog  a-----ccactcga
B D                   Ferret   a-----ccactcga
B D                     Panda  a-----ccactc--
               Pacific walrus  a-----ccactcga
                 Weddell seal  a-----ccactcga
             Black flying-fox  a-----ccactcga
B D                   Megabat  a-----ccactcga
                Big brown bat  a-----ccactcga
         David's myotis (bat)  a-----ccactcga
B D                  Microbat  a-----ccactcga
B D                  Hedgehog  a-----ccactcca
B D                     Shrew  a-----ctactcca
              Star-nosed mole  a-----ccgctaaa
B D                  Elephant  a-----ccactcga
          Cape elephant shrew  a-----ccact-ga
B D                   Manatee  g-----ccacttga
             Cape golden mole  a-----ccactcta
B D                    Tenrec  t-----ccactcca
                     Aardvark  a-----ccattcga
B D                 Armadillo  a-----ccagtcga
B D           Tasmanian devil  c-----ccgtccgc
B D                   Wallaby  c-----ccatccat
B D                  Platypus  g-----tgggccgg
  D           Green seaturtle  -----------gca
  D  Chinese softshell turtle  -----------gta
         Pundamilia nyererei  ==============
         Princess of Burundi  ==============
      Yellowbelly pufferfish  ==============
                 Spotted gar  ==============
B D                      Fugu  ==============
    Mexican tetra (cavefish)  ==============
B D               Stickleback  ==============
                 Zebra mbuna  ==============
B D                 Zebrafish  ==============
       Burton's mouthbreeder  ==============
          Southern platyfish  ==============
B D        American alligator  ==============
B D                   Chicken  ==============
  D              Mallard duck  ==============
B D                Budgerigar  ==============
B D               Zebra finch  ==============
  D          Peregrine falcon  ==============
  D              Saker falcon  NNNNNNNNNNNNNN
  D               Rock pigeon  NNNNNNNNNNNNNN
B D       Medium ground finch  ==============
B D                    Lizard  ==============
  D       Collared flycatcher  ==============
          Tibetan ground jay  ==============
  D    White-throated sparrow  ==============
B D                Coelacanth  ==============
B D                   Opossum  --------------
  D            Painted turtle  ==============

Alignment block 23 of 956 in window, 146637234 - 146637262, 29 bps 
B D                     Human  gggtt------------cccc-ttttc------------cact-c--t-ccttcccac
B D                     Chimp  gggtt------------cccc-ttttc------------cact-c--t-ccttcccac
B D                   Gorilla  gggtt------------cccc-ttttc------------cact-c--t-ccttcccac
B D                 Orangutan  gggtt------------cccc-ttttc------------ca---c--t-ccttcccac
B D                    Gibbon  gggtt------------cccc-atttc------------cact-c--t-ccttcccac
B D                    Rhesus  gggtt------------cccc-ttttc------------cact-c--t-ccttcccac
B D       Crab-eating macaque  gggtt------------cccc-ttttc------------cact-c--t-ccttcccac
B D                    Baboon  gggtt------------cccc-ttttc------------cact-c--t-ccttcccac
B D              Green monkey  gggtt------------cccc-ttttc------------cact-c--t-ccttcccac
B D                  Marmoset  ggggt------------cccc-ttttc------------cacg-c--g-ccttctcac
B D           Squirrel monkey  ggggt------------cccc-ttttc------------cacg-c--t-ccttctcac
B D                  Bushbaby  gggtc------------cccc-ctttc------------tacg-c--t-tctttcca-
           Chinese tree shrew  -gatt------------cccc-ttttc------------tgtgcc--c-cctttccac
B D                  Squirrel  ggg-t------------tctcactttc------------cacg-c--t-cctttccac
       Lesser Egyptian jerboa  ggg-c------------cttt-ctctg------------cagg-c--g-gctttccac
                 Prairie vole  ggg-c------------tccc-ctttc------------cgtg-ct-t-gccctccac
B D           Chinese hamster  ggg-c------------ttcc-ctttc------------cgtc-cc-a-gccctccac
               Golden hamster  ggg-c------------ttcc-c-ttc------------cgtg-gt-t-tccctccac
B D                     Mouse  ggg-c------------tccc-ctttc------------cacg-ct-t-gccctccac
B D                       Rat  ggg-c------------tctc-ctttc------------cacg-ct-t-gccctccac
B D            Naked mole-rat  gggtc------------cctc-ctttc------------cacg-c--t-cgtctccac
B D                Guinea pig  gggtc------------cctc-cttgc------------caca-t--t-ctttttcac
                   Chinchilla  gggtc------------cctc-ctcgc------------caca-c--t-cttttccac
             Brush-tailed rat  atgtc------------cctc-cttgc------------caca-c--t-cttttccag
B D                    Rabbit  ggatc------------cccc-tttcc------------ctcg-c--t-ccttctcac
B D                      Pika  ggatc------------cccc-ttttc------------cacg-c--t-gcttctcac
B D                       Pig  gggcc------------cccc-tccgc------------cacg-c--t-cctttccac
B D                    Alpaca  gggcc------------tccc-ttcgc------------cacg-c--t-ccttcccac
               Bactrian camel  gggcc------------cccc-ttcgc------------cacg-c--t-ccttcccac
B D                   Dolphin  gggtc------------cccc-ttcgc------------cacg-c--t-cgttcccac
                 Killer whale  gggtc------------cccc-ttcgc------------cacg-c--t-cgttcccac
             Tibetan antelope  gggct------------cccc-ttcgc------------cacg-c--t-ccttgccac
B D                       Cow  gggcc------------cccc-ttcgc------------cacg-c--t-ccttgccac
B D                     Sheep  gggcc------------cccc-ttcgc------------cacg-c--t-ccttgccac
                Domestic goat  gggcc------------cccc-ttcgc------------cact-c--t-ccttgccac
B D                     Horse  gggcc------------cccc-ttcgc------------caca-c--t-ccttcccac
B D          White rhinoceros  gggcc------------cccc-ttcgc------------cacg-c--t-ctttcccac
B D                       Cat  agccc------------cccc-ttcgc------------cata-c--t-cctttccac
B D                       Dog  gggcc------------cccc-cttgc------------cacg-c--t-cctttccac
B D                   Ferret   gggcc------------cctc-ttcgc------------cacg-c--t-cctttccac
B D                     Panda  gggcc------------cccc-ttcgc------------cacg-c--t-cctttccac
               Pacific walrus  gggcc------------cccc-ttcgc------------cacg-c--t-cctttgcac
                 Weddell seal  gggcc------------cccc-ttcgc------------tacg-c--t-ccgttccac
             Black flying-fox  gggcc------------cccc-ttcgc------------cacg-c--t-ccttcccat
B D                   Megabat  gggcc------------cccc-ttcgc------------cacg-c--t-cctttccat
                Big brown bat  tggcc------------cccc-ttcgc------------cacg-c--t-tcttcccac
         David's myotis (bat)  tggct------------cccc-ttcgc------------cacg-c--t-tcctcccac
B D                  Microbat  tggcc------------cccc-ttcgc------------cacg-c--t-tcctcccac
B D                  Hedgehog  -ggct------------cccc-ttcgc------------cgcg-c--c-gcttcccgc
B D                     Shrew  cggct-------------ccc-ttcgc------------ctcg-c--t-ccttcctgc
              Star-nosed mole  tggct------------cccc-ttcgc------------cagg-a--t-ccttcccac
B D                  Elephant  agggc------------cccc-ttcgc------------cacg-c--t-tcttgccat
          Cape elephant shrew  aggtt------------cccc-ttcgc------------cacg-ctgt-ttttgtc-c
B D                   Manatee  aggtt------------cccc-ttcgc------------cacg-c--t-ccttgccat
             Cape golden mole  gggtt------------cccc-tttgc------------ca------c-tcttgttgt
B D                    Tenrec  aggtc------------cccc-tttac------------cact----c-tcttgtcat
                     Aardvark  aggtc------------cccc-tttgc------------cacg-c--t-tcttgccat
B D                 Armadillo  aggtc------------tttc-ttcac------------cacg-t-------------
B D                   Opossum  ---cc------------ctcc-cttcctcccgcgcctcgcctg-c--taccttcccgc
B D           Tasmanian devil  cctcc------------ctcc-ctccctcctgcgccgagcccg-c--taccttcccgc
B D                   Wallaby  cctcc------------ctcc-ctccctccagcgcgtcgcccg-c--taccttcccgc
B D                  Platypus  gagac------------ggct-ctccc------------ctcg-c--c-c--------
B D       Medium ground finch  -----------------tggg-gtcgt------------cgct-t--c-ccccctcct
B D               Zebra finch  -----------------cccg-gacgg------------gact-t--t-tccccccct
B D        American alligator  -----------------gggg-ctcgg------------ggcc-c--c-ggtctc---
  D           Green seaturtle  gggtgggaa------ctcctg-ctcgc------------caca-t--g-ctctacccc
  D            Painted turtle  ---------------caccag-ctcgc------------caca-t--g-ctctacccg
  D  Chinese softshell turtle  aagtgagaactccagcaccag-ctctc------------cgcc-t--g-ctctacccg
B D               Stickleback  gagtt------------cacc-ttttt------------attt-t--t-ctttcgctc
         Pundamilia nyererei  ==========================================================
         Princess of Burundi  ==========================================================
      Yellowbelly pufferfish  ==========================================================
                 Spotted gar  ==========================================================
B D                      Fugu  ==========================================================
    Mexican tetra (cavefish)  ==========================================================
                 Zebra mbuna  ==========================================================
B D                 Zebrafish  ==========================================================
       Burton's mouthbreeder  ==========================================================
          Southern platyfish  ==========================================================
B D                   Chicken  ==========================================================
  D              Mallard duck  ==========================================================
B D                Budgerigar  ==========================================================
  D          Peregrine falcon  ==========================================================
  D              Saker falcon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
  D               Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                    Lizard  ==========================================================
  D       Collared flycatcher  ==========================================================
          Tibetan ground jay  ==========================================================
  D    White-throated sparrow  ==========================================================
B D                Coelacanth  ==========================================================

Inserts between block 23 and 24 in window
B D      Medium ground finch 4bp
B D              Zebra finch 5bp
B D       American alligator 17bp
  D          Green seaturtle 5bp
  D           Painted turtle 5bp
  D Chinese softshell turtle 5bp

Alignment block 24 of 956 in window, 146637263 - 146637274, 12 bps 
B D                     Human  tct-g--tttttgt-c--
B D                     Chimp  tct-g--tttttgt-c--
B D                   Gorilla  tct-g--tttttgt-c--
B D                 Orangutan  tct-g--tttttgt-c--
B D                    Gibbon  tct-g--tttttgt-c--
B D                    Rhesus  tct-g--tttttgt-c--
B D       Crab-eating macaque  tct-g--tttttgt-c--
B D                    Baboon  tct-g--tttttgt-c--
B D              Green monkey  tct-g--tttttgt-c--
B D                  Marmoset  tct-g--tttttgt-c--
B D           Squirrel monkey  tct-g--tttttgt-c--
B D                  Bushbaby  -ct-g--tttttgt-c--
           Chinese tree shrew  tc-----ctcttgt-c--
B D                  Squirrel  ttt-g--tttttgt-c--
       Lesser Egyptian jerboa  ttg-g--tttctgt-c--
                 Prairie vole  ttt-gt-tttttgt-c--
B D           Chinese hamster  ttt-g--tttttgt-c--
               Golden hamster  ttt-g--tttttgt-c--
B D                     Mouse  ttt-g--tttttgt-c--
B D                       Rat  ttt-g--tttttgt-c--
B D            Naked mole-rat  -------tttttgt-c--
B D                Guinea pig  tct-g--tttctgt-c--
                   Chinchilla  ttt-g--tttttgt-c--
             Brush-tailed rat  ttt-g--tttttgt-c--
B D                    Rabbit  tct-a--tttttgt-c--
B D                      Pika  tct-a--tttttgt-c--
B D                       Pig  tct-g---ttttgt-c--
B D                    Alpaca  tct-g---ttttgtcc--
               Bactrian camel  tct-g---ttttgtcc--
B D                   Dolphin  tct-g---tttcgt-c--
                 Killer whale  tct-g---tttcgt-c--
             Tibetan antelope  tct-g---ttttgt-c--
B D                       Cow  tct-g---ttttgt-c--
B D                     Sheep  tct-g---ttttgt-c--
                Domestic goat  tct-g---ttttgt-c--
B D                     Horse  tct-g---ttttgt-c--
B D          White rhinoceros  tct-g---ttttgt-c--
B D                       Cat  tct-g---ttttgt-c--
B D                       Dog  tct-g---ttttgt-c--
B D                   Ferret   tct-g---ttttgt-c--
B D                     Panda  cgt-g---ttttgt-c--
               Pacific walrus  tct-g---ttttgt-c--
                 Weddell seal  tct-g---ttttgt-c--
             Black flying-fox  tct-g---tttcgt-c--
B D                   Megabat  tct-g---tttcgt-c--
                Big brown bat  tct-g---ttttgt-c--
         David's myotis (bat)  tct-g---ttttgt-c--
B D                  Microbat  tct-g---ttttgt-c--
B D                  Hedgehog  ccg-g-------gt-c--
B D                     Shrew  tct-g---tttggt-c--
              Star-nosed mole  tct-g---ttttgt-c--
B D                  Elephant  tct-g--tttttgt-c--
          Cape elephant shrew  tct-g--tttttgt-c--
B D                   Manatee  tct-g--tttttgt-c--
             Cape golden mole  tcg-g--tttttgt-c--
B D                    Tenrec  tct-g--tttttgt-c--
                     Aardvark  ttt-g--tttttgt-c--
B D                 Armadillo  ---------------c--
B D                   Opossum  tcc-g--actttgc-c--
B D           Tasmanian devil  tcc-g--actttgc-c--
B D                   Wallaby  tcc-g--actttgc-c--
B D                  Platypus  -tc-g----------c--
B D       Medium ground finch  ----------tttt-c--
B D               Zebra finch  ----a--aaattat-t--
  D           Green seaturtle  ----g--ctcctgt-a--
  D            Painted turtle  ----g--ctcctgc-a--
  D  Chinese softshell turtle  ----g--ctcctgc-a--
B D                    Lizard  tctcg--ctctgtc----
B D               Stickleback  -----cctttcaat-cta
         Pundamilia nyererei  ==================
         Princess of Burundi  ==================
      Yellowbelly pufferfish  ==================
                 Spotted gar  ==================
B D                      Fugu  ==================
    Mexican tetra (cavefish)  ==================
                 Zebra mbuna  ==================
B D                 Zebrafish  ==================
       Burton's mouthbreeder  ==================
          Southern platyfish  ==================
B D        American alligator  ==================
B D                   Chicken  ==================
  D              Mallard duck  ==================
B D                Budgerigar  ==================
  D          Peregrine falcon  ==================
  D              Saker falcon  NNNNNNNNNNNNNNNNNN
  D               Rock pigeon  NNNNNNNNNNNNNNNNNN
  D       Collared flycatcher  ==================
          Tibetan ground jay  ==================
  D    White-throated sparrow  ==================
B D                Coelacanth  ==================

Inserts between block 24 and 25 in window
B D      Medium ground finch 2501bp
B D              Zebra finch 23bp
B D                   Lizard 13bp

Alignment block 25 of 956 in window, 146637275 - 146637321, 47 bps 
B D                     Human  cc----agcgc--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D                     Chimp  cc----agcgc--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D                   Gorilla  cc----agcac--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D                 Orangutan  cc----agcgc--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D                    Gibbon  cc----ag--c--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D                    Rhesus  cc----agcgc--tcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D       Crab-eating macaque  cc----agcgc--tcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D                    Baboon  cc----agcgc--tcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D              Green monkey  cc----agcgc--tcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D                  Marmoset  cc----accgc--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D           Squirrel monkey  cc----actgc--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D                  Bushbaby  tt----agcga--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
           Chinese tree shrew  cc----agcgc--gcgccaacgcctc---t----caggcctgc--c--------------------tcct
B D                  Squirrel  ct----agcgc--gcgccagcgtctc---t----caggcctgc--c--------------------gcct
       Lesser Egyptian jerboa  ct----agggc--gcgccagtgcctc---t----caggcctgc--c--------------------gcct
                 Prairie vole  ct----agcgc--acagcagttcctc---t----tagacctgc--c--------------------gcct
B D           Chinese hamster  a-----agcgc--gcactagtgcctc---t----taggcctgc---------------------------
               Golden hamster  ct----agcgc--gtgacggtgcctc---t----caggcctgc---------------------------
B D                     Mouse  ct----agctc--gcgccagtgcctc---t----taggccttc--t--------------------gctt
B D                       Rat  ct----agagc--gtgccagtgcctc---t----taggcctgc--c--------------------gcct
B D            Naked mole-rat  ct----agcgc--gcgccagcgcctt---tcaggcaggcctgc--c--------------------gccc
B D                Guinea pig  cc----agcgc--gcgc-----------------caggcctgc--c--------------------gcct
                   Chinchilla  ct----agcgc--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
             Brush-tailed rat  ct----agcgc--gcgccagaggctc---t----caggcctgc--c--------------------gcct
B D                    Rabbit  cc----ggctc--gcgtccccgcctc---t----caggcctgc--c--------------------gcct
B D                      Pika  tc----agcgc--gcgtcagctcctc---t----caggcctgc--c--------------------tcct
B D                       Pig  cc----agcgc--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D                    Alpaca  cc----agcgc--gcgccagcgcctc---t----caggcctgc--c--------------------tcct
               Bactrian camel  cc----agcgc--gcgccagcgcctc---t----caggcctgc--c--------------------tcct
B D                   Dolphin  cc----agcgc--gccccggcgcctc---t----caggcctgc--c--------------------gcct
                 Killer whale  cc----agcgc--gcgccggcgcctc---t----caggcctgc--c--------------------gcct
             Tibetan antelope  cc----agcgc--gcgccagagcctc---t----caggcctac--c--------------------gcct
B D                       Cow  cc----agcgc--gcgccagagcctc---t----caggcctac--c--------------------gcct
B D                     Sheep  cc----agcgc--gcgccagagcctc---t----caggcctac--c--------------------gcct
                Domestic goat  cc----agcgc--gcgccagagcctc---t----caggcctac--c--------------------gcct
B D                     Horse  cc----agcgc--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D          White rhinoceros  cc----agcgc--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D                       Cat  cc----agcgc--gagccagcgcctc---t----caggcctgc--c--------------------gcct
B D                       Dog  cc----agcgc--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D                   Ferret   cc----agcgc--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D                     Panda  cc----agcgc--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
               Pacific walrus  cc----agcgc--gcgccagcgtctc---t----caggcctgc--c--------------------gcct
                 Weddell seal  cc----agcgc--gcgccagcgtctc---t----caggcctgc--c--------------------gcct
             Black flying-fox  cc----ggcgc--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D                   Megabat  cc----ggcgc--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
                Big brown bat  cc----agcgc--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
         David's myotis (bat)  cc----agagc--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D                  Microbat  cc----agcgc--gcgccagcgcctc---t----caggcctgc--c--------------------gcct
B D                  Hedgehog  cc----agcgc--gcgccagagcctc---g----caggcctgc--c--------------------gcct
B D                     Shrew  cc----agcgc--gcgccagagcctc---g----caggcctgc--c--------------------gcct
              Star-nosed mole  cc----agcga--gagccagagcctc---t----caggcctgc--c--------------------gcct
B D                  Elephant  cc----attgc--gcgccagcgcctc---t----caggcttgc--c--------------------gcct
          Cape elephant shrew  ccagggagcga--gcgccagcgtctc---t----caggcatgc--c--------------------gcct
B D                   Manatee  cc----agcgc--gcaccagcgcctc---t----caggcctgc--c--------------------gcct
             Cape golden mole  cc----agagt--gtgccagaacctc---t----caggcttgc--c--------------------tcct
B D                    Tenrec  cc----agctc--tagccagctcctc---t----caggcctgc--c--------------------gcct
                     Aardvark  cc----agcgc--gctccagcgcctc---t----cagccctgc--c--------------------gcct
B D                 Armadillo  cc----agcgc--gcgccagcgcttc---t----caggcctgc--c--------------------gcct
B D                   Opossum  cc----agcgccagcgcgggcgcttc---c----ccgagctgcgcc--------------------tcct
B D           Tasmanian devil  cc----agcgccaatgcgggcacttc---c----ccgagctgcgcc--------------------tcct
B D                   Wallaby  cc----agcgccaatgcgggcgcttc---c----ctgagctgcgcc--------------------tcct
B D                  Platypus  cc----ggcgt------------ccc---g----tccgcctgg--c--------------------gccg
B D               Zebra finch  ----------------ctgaggcggtgggg----tcg--------t--------------------ctct
B D        American alligator  ----------------ctgaccccct---g----ccg--------c--------------------agct
  D           Green seaturtle  ----------------cccgctccct---c----caa--------tac-----------------cacca
  D            Painted turtle  ----------------cccgctccca---c----caa--------t--------------------acca
  D  Chinese softshell turtle  ----------------cccgctccct---c----cag--------t--------------------acca
B D                    Lizard  ----------------gtcacactct---c----aaa--------cacagagagactccagggctctccc
B D               Stickleback  cc----agcag--ggtataaagcagc---a----cagtccagc--c--------------------gcct
         Pundamilia nyererei  ======================================================================
         Princess of Burundi  ======================================================================
      Yellowbelly pufferfish  ======================================================================
                 Spotted gar  ======================================================================
B D                      Fugu  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
                 Zebra mbuna  ======================================================================
B D                 Zebrafish  ======================================================================
       Burton's mouthbreeder  ======================================================================
          Southern platyfish  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
B D                Budgerigar  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
  D               Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D       Medium ground finch  ======================================================================
  D       Collared flycatcher  ======================================================================
          Tibetan ground jay  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                Coelacanth  ======================================================================

                        Human  gc-tctcgcacct
                        Chimp  gc-tctcgcacct
                      Gorilla  gc-tctcgcacct
                    Orangutan  gc-tctcgcacct
                       Gibbon  gc-tctcgcacct
                       Rhesus  gc-tctcgcacct
          Crab-eating macaque  gc-tctcgcacct
                       Baboon  gc-tctcgcacct
                 Green monkey  gc-tctcgcacct
                     Marmoset  gc-tctcgcacct
              Squirrel monkey  gc-tcttgcacct
                     Bushbaby  gc-tctcgcacct
           Chinese tree shrew  gc-tctcgcacct
                     Squirrel  gc-tctcgcacct
       Lesser Egyptian jerboa  gc-tct-gcacct
                 Prairie vole  ca-tcccgcacct
              Chinese hamster  ---tctcgcacct
               Golden hamster  ---tctcgcgcct
                        Mouse  gc-tctcacacct
                          Rat  cc-tctcgcacct
               Naked mole-rat  gc-tcccgcacct
                   Guinea pig  gc-tctcgcacct
                   Chinchilla  gc-tctcacacct
             Brush-tailed rat  gc-tcgcgcacct
                       Rabbit  gc-tctcgcacct
                         Pika  gc-tctcgcacct
                          Pig  gc-tctcgcacct
                       Alpaca  gc-tcttgcacct
               Bactrian camel  gc-tcttgcacct
                      Dolphin  gc-tctcgcacct
                 Killer whale  gc-tctcgcacct
             Tibetan antelope  gc-tctcgcacct
                          Cow  gc-tctcgcacct
                        Sheep  gc-tctcgcacct
                Domestic goat  gc-tctcgcacct
                        Horse  gc-tctcgcacct
             White rhinoceros  gc-tctcgcacct
                          Cat  gc-tctcgcacct
                          Dog  gc-tctcgcacct
                      Ferret   gc-tctcgcacct
                        Panda  gc-tctcgcacct
               Pacific walrus  gc-tctcgcacct
                 Weddell seal  gc-tctcgcacct
             Black flying-fox  gc-tctcgcacct
                      Megabat  gc-tctcgcacct
                Big brown bat  gc-tctcgcacct
         David's myotis (bat)  gc-tctcgcacct
                     Microbat  gc-tctcgcacct
                     Hedgehog  gc-tcccgcacct
                        Shrew  gc-tcccgcacct
              Star-nosed mole  gc-tctagcacct
                     Elephant  gc-tcccgcacct
          Cape elephant shrew  gc-tgcagcacct
                      Manatee  gc-tcctgcacct
             Cape golden mole  gc-ttccgcacct
                       Tenrec  gc-ccctgcacct
                     Aardvark  gc-tcctgcacct
                    Armadillo  gc-tcccgcacct
                      Opossum  gc-ttcagcacct
              Tasmanian devil  gc-ttcagcacct
                      Wallaby  gc-ttcagcacct
                     Platypus  gc------caccc
                  Zebra finch  tc-tcc--cacct
           American alligator  gc-ccc--caacc
              Green seaturtle  gc-tccagcacct
               Painted turtle  gc-tccagcacct
     Chinese softshell turtle  gc-tcgagcacct
                       Lizard  cc-tccctcagcc
                  Stickleback  acgtgttgaacaa
          Pundamilia nyererei  =============
          Princess of Burundi  =============
       Yellowbelly pufferfish  =============
                  Spotted gar  =============
                         Fugu  =============
     Mexican tetra (cavefish)  =============
                  Zebra mbuna  =============
                    Zebrafish  =============
        Burton's mouthbreeder  =============
           Southern platyfish  =============
                      Chicken  =============
                 Mallard duck  =============
                   Budgerigar  =============
             Peregrine falcon  =============
                 Saker falcon  NNNNNNNNNNNNN
                  Rock pigeon  NNNNNNNNNNNNN
          Medium ground finch  =============
          Collared flycatcher  =============
           Tibetan ground jay  =============
       White-throated sparrow  =============
                   Coelacanth  =============

Inserts between block 25 and 26 in window
B D              Zebra finch 913bp
B D       American alligator 2bp
  D          Green seaturtle 36bp
  D           Painted turtle 36bp
  D Chinese softshell turtle 36bp

Alignment block 26 of 956 in window, 146637322 - 146637391, 70 bps 
B D                     Human  g--ctcgcc-ttc-cc-------------caggcgcc------cagtgcctgcacctgctcc--------
B D                     Chimp  g--ctcgcc-ttc-cc-------------caggcgcc------cagtgcctgcacctgctcc--------
B D                   Gorilla  g--ctcgcc-ttc-cc-------------caggcgcc------cagtgcctgcacctgctcc--------
B D                 Orangutan  g--ctcgcc-ttc-cc-------------caggcgcc------cagtgcctgcacctgctac--------
B D                    Gibbon  g--ctcgcc-ttc-cc-------------caggcgcc------cagtgcctgcacctgctcc--------
B D                    Rhesus  g--ctcgcc-ttc-cc-------------caggcgcc------cagtgcctgcacctgctcc--------
B D       Crab-eating macaque  g--ctcgcc-ttc-cc-------------caggcgcc------cagtgcctgcacctgctcc--------
B D                    Baboon  g--ctcgcc-ttc-cc-------------caggcgcc------cagtgcctgcacctgctcc--------
B D              Green monkey  g--ctcgcc-ttc-cc-------------caggcgcc------cagtgcctgcacctgctcc--------
B D                  Marmoset  g--ctcgcc-ttc-cc-------------caggcgcc------cagtgcctgcacctgctcc--------
B D           Squirrel monkey  g--ctcgcc-tt--cc-------------caggcgcc------cagtgcttgcacctgctcc--------
B D                  Bushbaby  g--ctcgcc-ttc-cc-------------caggcgtc------cagggcttgcacctgctcc--------
           Chinese tree shrew  g--ctcgcc-ttc-cc-------------caggcgcc------cagtgcccgcacctgctcc--------
B D                  Squirrel  g--ctcgtc-ttc-cc-------------caggcgcc------tagggcctgcacctgctcc--------
       Lesser Egyptian jerboa  gctctcgcc-ttc-ccggggggtggggtgggggctcc------cagtgtgcgcagctgctcc--------
                 Prairie vole  g--ctcgcc-ttt-ct--------------aagctcc------ctgcttcagcacctgcttc--------
B D           Chinese hamster  g--ctcgac-tta-cc--------------aagctct------tagcttctgcatctgcttc--------
               Golden hamster  g--ctcgac-tta-cc--------------aagctcc------tagcttctgcatctgcttc--------
B D                     Mouse  g--ctggcc-ctc-cc--------------aagctcc------cagggcctgcacctgttcc--------
B D                       Rat  g--ctggcc-ttc-cc--------------aggctcc------cacggcctgcacctgctcc--------
B D            Naked mole-rat  g--ctcgcc-ttc-cc-------------caagctcc------cagcgcctgcacctgcgcc--------
B D                Guinea pig  g--ctcacc-agc-cc-------------catgatcc------cagcgcctgcacctgctcc--------
                   Chinchilla  g--ctcgtc-ttc-cc-------------caagctcc------cagtgcctgcacctgctcc--------
             Brush-tailed rat  g--ctcgcc-ttc-cc-------------c-agctcc------cagtgcttgcacctgctcc--------
B D                    Rabbit  g--ctcgcc-ttc-cc-------------caggcgcc------cagtgtctgcacctgctcc--------
B D                      Pika  g--ctcgcc-ttc-cc-------------caggcgcc------caagatctgcacctgctcc--------
B D                       Pig  g--ctcgcc-ttc-cc-------------caggcacc------gtgtgcctgcacctgctcc--------
B D                    Alpaca  g--ctcgcc-ttc-cc-------------caggcacc------gtgttcctgcacctgctcc--------
               Bactrian camel  g--ctcgcc-ttc-cc-------------caggcacc------gtgtgcctgcacctgctcc--------
B D                   Dolphin  g--ctcgcc-ttc-cc-------------caggcacc------gtgtgcctgcacctgcttc--------
                 Killer whale  g--ctcgcc-ttc-cc-------------caggcacc------gtgtgcctgcacctgcttc--------
             Tibetan antelope  g--ctcgcc-ttc-cc-------------caggcacc------gcgtgcctgcacctgctcc--------
B D                       Cow  g--ctcgcc-ttc-cc-------------caggcacc------gtgtgcctgcacctgctcc--------
B D                     Sheep  g--ctcgcc-ttc-cc-------------caggcacc------gcgtgcctgcacctgctcc--------
                Domestic goat  g--ctcgcc-ttc-cc-------------caggcacc------gcgtgcctgcacctgctcc--------
B D                     Horse  g--ctcgct-ttc-cc-------------caggcacc------ctgcgcctgcacctgctcc--------
B D          White rhinoceros  g--ctcgcc-ttc-cc-------------caggcacc------gtgtgcctgcacctgctcc--------
B D                       Cat  g--ctcgct-ttc-cc-------------caggcacc------gtgtgcctgcacctgctcc--------
B D                       Dog  g--ctcgct-ttc-cc-------------caggcacc------ctgtgcctgcacctgcgcc--------
B D                   Ferret   g--ctcgct-ttc-cc-------------caggcacc------gtgtgcctgcacctgctcc--------
B D                     Panda  g--ctcgct-ttc-cc-------------caggcacc------gcgtgcttgcacctgctcc--------
               Pacific walrus  g--ctcgct-ttc-cc-------------caggcacc------gtgtgcctgcacctgctcc--------
                 Weddell seal  g--ctcgct-ttc-cc-------------caggcacc------gtgtgcctgcacctgctcc--------
             Black flying-fox  g--ctcgcc-ttc-cc-------------caggcaca------gtgtgcctgcacctgctcc--------
B D                   Megabat  g--ctcgcc-ttc-cc-------------caggcaca------gtgtgcctgcacctgctcc--------
                Big brown bat  g--ctcgcc-ttc-cc-------------caggcact------gtgtgcctgcacctgctcc--------
         David's myotis (bat)  g--ctcgcc-ttc-cc-------------caggcact------gtgtgcctgcacctgctcc--------
B D                  Microbat  g--ctcgcc-ttc-cc-------------caggcact------gtgtgcctgcacctgctcc--------
B D                  Hedgehog  g--ctcgcc-ttc-cc-------------cgggcgct------gcgg--ctgcacctgctcc--------
B D                     Shrew  g--ctcgcc-atc-cc-------------caggcgcc------cgagctctgcacctgctcc--------
              Star-nosed mole  g--ctcgcc-ttc-cc-------------caggcacc------gtgtgcctgcacctgctcc--------
B D                  Elephant  g--ctcgcc-ttc-cc-------------taggcgcc--------atgcgtgcacctgctcc--------
          Cape elephant shrew  g--ttcgcc-ttc-cc-------------caggcgcc--------atggctgcacctgctcc--------
B D                   Manatee  g--ctcgcc-ttc-cc-------------caggcgct--------gtgcctgcacctgctcc--------
             Cape golden mole  g--ctctcc-ttc-cc-------------cagacgcc--------atgcctgcacctgcgcc--------
B D                    Tenrec  g--ctcact-ttc-cc-------------caggcgct--------gtgcctgcacctgctcc--------
                     Aardvark  g--ctcgcc-ttc-cc-------------agggcgcc--------atgcctgcacctgctcc--------
B D                 Armadillo  g--ctcgcc-ttc-cc-------------caggcgca--------gcgcctgcacctgctcc--------
B D                   Opossum  g--ctcgccactc-cc-------------taggcgct--------gcgcttgcacctgctcc--------
B D           Tasmanian devil  g--ctcgccactc-cc-------------taggcgct--------gcgcctgcacctgctcc--------
B D                   Wallaby  g--ctcgccactc-cc-------------caggcgcg--------gcgcctgcacctgctcc--------
B D                  Platypus  g--gagatc-tccggc-------------cgggc------------------cacctggtcc--------
B D        American alligator  --cctcccc-ttc-cc-------------ctg---------actccctccagcaccggctcc--------
  D           Green seaturtle  --ctccccc-agg-ct-------------caggcacc---agctccctcctgcctcggcttc--ctcca-
  D            Painted turtle  --ctccccc-atg-ct-------------ctggcacc---agctccctcctgcaccggcttc--ctcca-
  D  Chinese softshell turtle  --ctccccc-tct-ct-------------caggcacc---agccccctcatgcaccagtct---------
B D                    Lizard  --gctctca-gtg-cg-------------caggcgcccttctccctctccagcccgggcctcgcctccat
B D               Stickleback  -----catt-gtg-cc-------------caagcatt------gcgtgccggc----gctgc--------
         Pundamilia nyererei  ======================================================================
         Princess of Burundi  ======================================================================
      Yellowbelly pufferfish  ======================================================================
                 Spotted gar  ======================================================================
B D                      Fugu  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
                 Zebra mbuna  ======================================================================
B D                 Zebrafish  ======================================================================
       Burton's mouthbreeder  ======================================================================
          Southern platyfish  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
B D                Budgerigar  ======================================================================
B D               Zebra finch  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
  D               Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D       Medium ground finch  ======================================================================
  D       Collared flycatcher  ======================================================================
          Tibetan ground jay  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                Coelacanth  ======================================================================

                        Human  ----cggtcaacccc--cgtcc--ggattgggccac----ccg-----
                        Chimp  ----cggtcaacccc--cgtcc--ggattgggccac----ccg-----
                      Gorilla  ----cggtcaacccc--cgtcc--ggattgggccac----ccg-----
                    Orangutan  ----cggtcaacccc--cgtcc--ggattgggccac----ccg-----
                       Gibbon  ----cggtcaa-ccc--cgtcc--ggattgggccac----ccg-----
                       Rhesus  ----cggtcaacccc--ggtcc--ggattgggccac----ccg-----
          Crab-eating macaque  ----cggtcaacccc--ggtcc--ggattgggccac----ccg-----
                       Baboon  ----cggtcaacccc--cgtcc--ggattgggccac----ccg-----
                 Green monkey  ----cggtcaacccc--cgtcc--ggattgggccac----ccg-----
                     Marmoset  ----cggtcaacccc--cgtcc--ggatcaggccac----ccg-----
              Squirrel monkey  ----cggtcaacccc--cgtcc--ggatcgggccac----ccg-----
                     Bushbaby  ----c-gtca--ccc--cgtcc---gatagggccac----ccg-----
           Chinese tree shrew  ----c-gtca-cccc--cgtcc--ggatcgggccac----cca-----
                     Squirrel  ----tggtca-accc--tgtcc--ggtttgggccac----ccg-----
       Lesser Egyptian jerboa  ----cggcca-cccc--catcc--gtgaccgtccac----ccg-----
                 Prairie vole  ----gggcca-cccc--tgtcc--cggatccgacac----cgg-----
              Chinese hamster  ----gggcaa-cccc--tgtcc--tggatccgccac----ggg-----
               Golden hamster  ----gggcca-cccg--cgtcc--cggatccaccac----cgg-----
                        Mouse  ----ggatca-cccc--tgtcc--cggaccagccac----ccg-----
                          Rat  ----ggatca-cccc--tgtcc--gggaccagccac----ccg-----
               Naked mole-rat  ----cagtca-cccc--ggccg--gggcc-ggccac----ccg-----
                   Guinea pig  ----cggtca-ctcc--cgtcc--gggtcgggccac----ccg-----
                   Chinchilla  ----cggtct-cccc--tgtcc--gggtctggccac----ccg-----
             Brush-tailed rat  ----cgatct-cccc--agcct--gggtcgggccac----acg-----
                       Rabbit  ----cggtca-tccc--cgtcc--gaatcaggccac----ccg-----
                         Pika  ----cggtca-tccc--agtcc--ggatcaggccac----ccg-----
                          Pig  ----cagcca-cccc--agccc--aggtcgggtcat----ccg-----
                       Alpaca  ----cagcca-cccc--cgtcc--tggttgggccac----ccg-----
               Bactrian camel  ----cagcca-cccc--catcc--tggtcgggccac----ccg-----
                      Dolphin  ----cagcca-tccc--cgtcc--gggtcgggccac----cgg-----
                 Killer whale  ----cagcca-tccc--cgtcc--gggtcgggccac----cgg-----
             Tibetan antelope  ----cagcca-cccc--cgtcc--ggttcgggccac----ccg-----
                          Cow  ----cagcca-cccc--tgtcc--ggttcgggccac----ccg-----
                        Sheep  ----cagcca-cccc--cctcc--gg----------------------
                Domestic goat  ----cagcca-cccc--cgtcc--ggttccggccac----ccg-----
                        Horse  ----cagccgccccc--cgtcc--gggtcgggccac----ccg-----
             White rhinoceros  ----cagccg-cccc--cgtcc--gggtcgggccac----ccg-----
                          Cat  ----cagtca-cccc--agtcc--gggtcaggccac----ccg-----
                          Dog  ----cagtca-ccct--ggtcc--gggtcaggccac----ccg-----
                      Ferret   ----cagtca-cccc--agtct--gggtcaggccac----ccg-----
                        Panda  ----cagtca-cccc--agttc--gggtcaggccac------------
               Pacific walrus  ----cagtca-cccc--agtcc--gggtcaggccac----ccg-----
                 Weddell seal  ----cagtca-cccc--agtcc--gggtcagtccac----ccg-----
             Black flying-fox  ----cagtca-ctcc--cgtcc--gggccgggcaac----ccg-----
                      Megabat  ----cagtca-ctcc--cgtcc--gggccgggcaac----ccg-----
                Big brown bat  ----cagcca-cccc--cgtcc--tggttgggccac----ccg-----
         David's myotis (bat)  ----cagcca-cccc--cgtcc--tcgtc-ggccac----ccg-----
                     Microbat  ----cagcca-cccc--cgtcc--tcgtc-gcccac----ccg-----
                     Hedgehog  ----cgacca-cccc--cgtcccggg-ccgggccac----ccg-----
                        Shrew  ----cagcca---cc--cgtcc--ggctcgggccac----ccg-----
              Star-nosed mole  ----cagcta-ttcc--catcc--gg-tcgggccac----ccg-----
                     Elephant  ----cggcca-cccc--tttcc--cagtccggccac----ccg-----
          Cape elephant shrew  ----cggcca-ggcc--cgtcc--gggtcgggccac----ccg-----
                      Manatee  ----cggcca-cccc--cgtcc--cggtcgggccac----cca-----
             Cape golden mole  ----cggcca-ctcc---gtcc--cgttccggctaa----gcg-----
                       Tenrec  ----cggtca-cccc--tgtcc--tggtcaggccac----ccg-----
                     Aardvark  ----cagcca-cccc--tgtcc--cagtcgggccac----ccg-----
                    Armadillo  ----cgacca-gccc--cgtcc--ttgtccggccac----ccg-----
                      Opossum  ----cagcta-ccctgacgccc----------ctgc----ccg-----
              Tasmanian devil  ----cggcta-ccccgacgccc----------ctgc----ccg-----
                      Wallaby  ----cggcta-ccctgacgccc----------ctgc----ccg-----
                     Platypus  ----ccgcc--tcac--cggcc--gggccgggccattttacgt-----
           American alligator  ---ccgggcg-ctgg--ggctg--cagctgc-----------------
              Green seaturtle  ccaccagacc-ccca--tgcac--cagctccctgat----tct-----
               Painted turtle  acacctgacc-caca--tgcac--cagctccctgat----tct-----
     Chinese softshell turtle  -------------ca--tgcac--gagccccctgat----tct-----
                       Lizard  ccaatgggcg-acga--gg------agctgccggga----act-----
                  Stickleback  ----cgggcc-tcgc--ggccg--ggaccagactgg----acggcctg
          Pundamilia nyererei  ================================================
          Princess of Burundi  ================================================
       Yellowbelly pufferfish  ================================================
                  Spotted gar  ================================================
                         Fugu  ================================================
     Mexican tetra (cavefish)  ================================================
                  Zebra mbuna  ================================================
                    Zebrafish  ================================================
        Burton's mouthbreeder  ================================================
           Southern platyfish  ================================================
                      Chicken  ================================================
                 Mallard duck  ================================================
                   Budgerigar  ================================================
                  Zebra finch  ================================================
             Peregrine falcon  ================================================
                 Saker falcon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
          Medium ground finch  ================================================
          Collared flycatcher  ================================================
           Tibetan ground jay  ================================================
       White-throated sparrow  ================================================
                   Coelacanth  ================================================

Inserts between block 26 and 27 in window
B D              Stickleback 2584bp

Alignment block 27 of 956 in window, 146637392 - 146637472, 81 bps 
B D                     Human  cggg----ttcctgcgtcgg-----------------ggtcc--cg-------gggccttctcacc----
B D                     Chimp  cggg----ttcctgcgtcgg-----------------ggtcg--cg-------gggccttctcacc----
B D                   Gorilla  cggg----ttcctgcgtcgg-----------------ggtcg--cg-------gggccttctcacc----
B D                 Orangutan  cggg----ttcctgcgtcgg-----------------ggtcg--cg-------gggccttctcacc----
B D                    Gibbon  cggg----ttcttgcgttgg-----------------agccg--cg-------gggccttctcacc----
B D                    Rhesus  cggg----ttcctgcgtcgg-----------------ggtcg--tg-------gggccttctcacc----
B D       Crab-eating macaque  cggg----ttcctgcgtcgg-----------------ggtcg--tg-------gggccttctcacc----
B D                    Baboon  cggg----ttcctgcgtcgg-----------------ggtcg--cg-------gggccttctcacc----
B D              Green monkey  cggg----ttcctgcgtcgg-----------------ggtcg--cg-------gggccttctcact----
B D                  Marmoset  cggg----ctcctgcgtcgg-----------------ggtcg--tg-------gggccttctcact----
B D           Squirrel monkey  cgga----cttctgcgtcgg-----------------ggtcg--tg-------gagccttctcact----
B D                  Bushbaby  cccg----tttctacgtccc-----------------ggt------------------------------
           Chinese tree shrew  cggg----ctcctgcgtctg-----------------ggtcg--cg-------gaacattctcacc----
B D                  Squirrel  cggg----ttcctgagtccg-----------------ggtca--ca-------gggccttctcacc----
       Lesser Egyptian jerboa  tggg----tccctgcgtcag-----------------ggtcg--cg-------gggccttgtcacc----
                 Prairie vole  ccgg----ttc--------------------------------------------------tcatc----
B D           Chinese hamster  cagg----ttc--------------------------------------------------tcacc----
               Golden hamster  cagg----aca-----------------------------------------------------------
B D                     Mouse  cagg----tcc--------------------------------------------------tcatc----
B D                       Rat  cagg----tcc--------------------------------------------------tcacc----
B D            Naked mole-rat  cggg----ctcccgcgtgcc-----------------aatcg--cg-------gggccctcccacc----
B D                Guinea pig  cggg----ttcctgtgtcca-----------------ggtca--cc-------gggccttctcgcc----
                   Chinchilla  cggg----ttcctgcgtcca-----------------ggtca--gc-------cggccttctcacc----
             Brush-tailed rat  cggg----t-------tccg-----------------ggtca--cc-------cggccttctcagc----
B D                    Rabbit  cggg----ttcctgggtcca-----------------ggttgttga-------aggccttctcacc----
B D                      Pika  caag----ttctcgggaaca-----------------ggttg-agg-------aggcctttttgcc----
B D                       Pig  cggg----ctccagcgcccc-----------------ggtct--ca-------gggccttctcacc----
B D                    Alpaca  cggg----ctcaagcgtacg-----------------ggtct--ca-------gggctttctcacc----
               Bactrian camel  cggg----ctccagcgtacg-----------------ggtct--ca-------gggctttctcacc----
B D                   Dolphin  cggg----ctccagcgtccc-----------------ggtct--ta-------gggccttc-cacc----
                 Killer whale  cggg----ctccagcgtccc-----------------ggtct--ta-------gggccttc-cacc----
             Tibetan antelope  cggg----ctctagcgtgtg-----------------ggtct--ca-------gggtcttctcacc----
B D                       Cow  cggg----ctctagcgtgcg-----------------ggtct--ca-------gggtcttctcacc----
B D                     Sheep  ----------------------------------------------------------------------
                Domestic goat  cggg----ctctagcgtgtg-----------------ggtct--ca-------gggtcttctcacc----
B D                     Horse  cagg----ctccagcgtccc-----------------agtct--ca-------aagccttctcact----
B D          White rhinoceros  cagg----ctccagagtcct-----------------ggttt--ca-------gggctttcgcacc----
B D                       Cat  cgga----ctccagcgtcca-----------------ggtct--ca-------gggccttctcacc----
B D                       Dog  cgga----ctccagtgtcca------------------gtct--ca-------gggcctcctcatc----
B D                   Ferret   caga----ctccagtgtccg-----------------ggtct--ca-------gggccttctcacc----
B D                     Panda  --------ctccagtgtcca-----------------ggact--ca-------gggccttctca-c----
               Pacific walrus  cgga----ctccagtgtcca-----------------ggtct--ca-------gagccttctcacc----
                 Weddell seal  cgga----ctccagtgtccg-----------------ggtct--cg-------cggtcttctcacc----
             Black flying-fox  cggg----ctccagagtccg-----------------ggtct--cc-------ggg---cctcgcc----
B D                   Megabat  cggg----ctccagcgtccg-----------------ggtct--cc-------ggg---cctcgcc----
                Big brown bat  ccgg----ctccagcgtcgg-----------------gacct-----------------tctcacc----
         David's myotis (bat)  ccgg----at-cagcgtcgg-----------------gacct-----------------tttcacc----
B D                  Microbat  ccgg----ctccagcgtcgg-----------------gacct-----------------tctcacc----
B D                  Hedgehog  cggg----tccctgcgtccaggggggaggggaagaggaggaa--gg-------ggggcttctcatc----
B D                     Shrew  cagg----ctccagagtca---------------------cg--cg-------ggccctcctcgcc----
              Star-nosed mole  cagg----cttcagtatcca-----------------agttg--aa-------ggaccttctcacc----
B D                  Elephant  cgga----ctgtggcgtccg-----------------ggtcg--ag-------gggcctcctcaca----
          Cape elephant shrew  tggg----gtcctatgtccg-----------------ggtca--ca-------gggccttcttata----
B D                   Manatee  cgga----ctgctgcgtccg-----------------ggtcg--ca-------gggccttctcaca----
             Cape golden mole  aaga----ctcttgcgtcca-----------------ggtcg--cg-------g-gctttctcaca----
B D                    Tenrec  cgga----ctcccgagtccc-----------------cgtcg--cg-------gagcctactcacg----
                     Aardvark  cgga----ctcctgcatccg-----------------actct--tg-------gggccttctcaaa----
B D                 Armadillo  cggg----ctcctgcgtccc-----------------gattg--cg-------ggaccttctcttc----
B D                   Opossum  ctgggctattcctgcccaga-----------------actcc--cgtaccgggtgagccccgagcc----
B D           Tasmanian devil  ctgggctactcctgcccagc-----------------actcc--ctcacagggtgagccccgagcc----
B D                   Wallaby  ctggtctatttctgcccagc-----------------actcc--ctcac----tgagccctgagcc----
B D                  Platypus  aaag----gacccacccccc-----------------ggccc--cg-------gggac----cgcg----
B D        American alligator  ---g----gagcggcagcag----------------acaaag--ct-------gggagcgctgggccggg
  D           Green seaturtle  ccag----aaccagctccag-----------------cacct--ct----------ccctccaaccccag
  D            Painted turtle  ccag----aaccagctccag-----------------cacct--ct----------ccctccaaccccag
  D  Chinese softshell turtle  ccag----aaccagccccag----------------ccacct--ct----------ccctccaaccccag
B D                    Lizard  gggg----gag-agcccgga-----------------cgacg--ct----------ccc----agctcag
         Pundamilia nyererei  ======================================================================
         Princess of Burundi  ======================================================================
      Yellowbelly pufferfish  ======================================================================
                 Spotted gar  ======================================================================
B D                      Fugu  ======================================================================
    Mexican tetra (cavefish)  ======================================================================
B D               Stickleback  ======================================================================
                 Zebra mbuna  ======================================================================
B D                 Zebrafish  ======================================================================
       Burton's mouthbreeder  ======================================================================
          Southern platyfish  ======================================================================
B D                   Chicken  ======================================================================
  D              Mallard duck  ======================================================================
B D                Budgerigar  ======================================================================
B D               Zebra finch  ======================================================================
  D          Peregrine falcon  ======================================================================
  D              Saker falcon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
  D               Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D       Medium ground finch  ======================================================================
  D       Collared flycatcher  ======================================================================
          Tibetan ground jay  ======================================================================
  D    White-throated sparrow  ======================================================================
B D                Coelacanth  ======================================================================

                        Human  ctcgcctg------ca-ccc---tgctcc-ttccgctctcta-------------------gg-gag---
                        Chimp  ctcgcctg------ca-ccc---tgctcc-ttcctctctcta-------------------ga-gag---
                      Gorilla  ctcgcctg------ca-ccc---tgctcc-ttccgctctcta-------------------gg-gag---
                    Orangutan  ctcgcctg------ca-ccc---tgctcc-ttccgctctcta-------------------gg-gag---
                       Gibbon  ctcgcctg------ca-ccc---tgctcc-ttccgctctcta-------------------gg-gag---
                       Rhesus  ctcgcctg------ca-ccc---tgctcc-ttccgctctcta-------------------gg-gag---
          Crab-eating macaque  ctcgcctg------ca-ccc---tgctcc-ttccgctctcta-------------------gg-gag---
                       Baboon  ctcgcctg------ca-ccc---tgctcc-ttccgctctcta-------------------gg-gag---
                 Green monkey  ctcgcctg------ca-ccc---tgctcc-ttccgctctcta-------------------gg-gag---
                     Marmoset  ctcgccag------ca-ccc---cactcc-ttccgctctcta-------------------gg-gag---
              Squirrel monkey  ctcgccag------ca-ccc---cgctcc-ttccgctctcta-------------------gg-gag---
                     Bushbaby  ctcttcta------ca-ccc---ggctct-ttccacgctttg-------------------gg-aag---
           Chinese tree shrew  ctcgcctg------cacccc---cattgc-ttctgctctccg-------------------gg-gag---
                     Squirrel  cttgctgg------ca-ctc---cgcgcc-tttcgagctctg-------------------gg-gag---
       Lesser Egyptian jerboa  cttgacag------ca-cccccaagtg---ttctgcgctctg-------------------gg-aggg--
                 Prairie vole  tgtatctt------ct-ccc---agtgtc-ttccgtgcttgg-------------------tg-ggggtg
              Chinese hamster  cgtatctg------ca-tcc---agtgtc-ttccgtgctctg-------------------gg-gag---
               Golden hamster  -----ctg------ca-ccc---agtgtc-ttccgtgttctg-------------------cg-gag---
                        Mouse  ggtatatg------ca-cct---agtgtctttccgcgctctg-------------------g--aag---
                          Rat  gttgtctg------ca-cct---agtgtc-ttccgcgccctg-------------------ga-aag---
               Naked mole-rat  ctcgcctg------ag-ccc---cgcacc-ttccgcgctcta-------------------gg-aag---
                   Guinea pig  ctcgcctg------ag-ccc---cgcacc-ttccgcgctcta-------------------gg-gag---
                   Chinchilla  cttgcctg------ag-ccc---cgcgcc-ttccgcggtcta-------------------gg-gag---
             Brush-tailed rat  cttgcggg------ag-cac---tgcgcc-ttccaagctcta-------------------gg-aag---
                       Rabbit  ctttcctg------ca-ccc---tgcttc-ttcagcgttctg-------------------tg-gag---
                         Pika  atttcctg------ca-ccc---cgctgc-atccgcacttgg-------------------gg-gag---
                          Pig  ctcgcctg------ta-ccc---tgct-----ctgcgctctg-------------------gg-gag---
                       Alpaca  ctcgcctg------ca-c-------cttc-ttccacgctctg-------------------gg-gag---
               Bactrian camel  ctcgcctg------ca-ccc---cgctcc-ttccaagctctg-------------------gg-gag---
                      Dolphin  ctcgcttg------ta-ccc---cgctcc-tcccgcgctccg-------------------gg-gag---
                 Killer whale  ctcgcttg------ta-ccc---cgctcc-tcccgcgctccg-------------------gg-gag---
             Tibetan antelope  ctcgccgg------ta-ccc---cgctcc-ctccgcactctg-------------------gtggggggg
                          Cow  ctcgctgg------ta-ccc---cgctcc-ctccgcactctg-------------------cc-gggggt
                        Sheep  --------------------------------------tctg-------------------gt-gggggg
                Domestic goat  ctcgccgg------ta-ccc---cgctcc-ctccgcactctg-------------------gt-gggggg
                        Horse  ctcgcctg------ca-ccc---cgctcc-ttcagtgctcta-------------------gg-gag---
             White rhinoceros  ctcgcctg------ca-ccc---cgctcc-ttcagcgctcta-------------------gg-gag---
                          Cat  ctcgccta------ta-ctc---cgctcc-ttctgcgctctg-------------------gg-gag---
                          Dog  ctcggctc------ta-ctc---tactcc-ttccacgctgtg-------------------gg-gag---
                      Ferret   ctcgccta------ta-ctc---tgctcc-ttccgcgctctg-------------------gg-gag---
                        Panda  ctcgccta------ta-ccc---tgctcc-ttctgcgctctg-------------------gg-gag---
               Pacific walrus  ctcgccta------ca-ctc---tactcc-ttccgcgctctg-------------------gg-gag---
                 Weddell seal  ctcgccta------ta-gcc---tactcc-ttccgcgctctg-------------------gg-gag---
             Black flying-fox  ctcgcctg------ca--cc---cgctcc-ttctgcgctccc-------------------gg-gag---
                      Megabat  ctcgcctg------ca--cc---cgctcc-ttctgcgctccc-------------------gg-gag---
                Big brown bat  ctcgcctg------ca-ccc---cgctcc-ttctgcgctctg-------------------gg-gag---
         David's myotis (bat)  ctcacctg------ca-ccc---cgctcc-ttccgcgctctg-------------------tg-gag---
                     Microbat  ctcacctg------ca-ccc---cgctcc-ttccgcgctctg-------------------gg-aag---
                     Hedgehog  ctggcctg------ca-cc-------------tcgctctaggggcg---------------gg-ggg---
                        Shrew  ctc----g------ca-cc-----actcc-tttggctctggggtggggagaggggacgcgggg-gag---
              Star-nosed mole  ctcgcctg------ca-ccc---agctcc-tttctcgctcggggtggga------------gg-ggg---
                     Elephant  ttcgcctt------cg-ccc---cgttcg-ttctgcactctg-------------------gg-gag---
          Cape elephant shrew  gtcgcctt------cg-ctt---ggctcc-tgccacactctt-------------------gg-gag---
                      Manatee  ctcgcctt------cg-ccc---cattcc-ttcagtactttg-------------------gg-gag---
             Cape golden mole  ctagtctt-------g-tcc---cgctcc-atccgcactctg-------------------ag-aag---
                       Tenrec  c--gcctt------cg-ccc---ctttcc-atctactttctg-------------------gg-gag---
                     Aardvark  ctcgcctt------cg-ccc---ggttcc-ttctgaagtctg-------------------gg-gag---
                    Armadillo  ctcgcctg------ta-ccc---cgctcc-ttctgcgctct--------------------gg-gag---
                      Opossum  cttcacta------ca-ccc------gcc-ctccaccctgtgtgctaaccc----------gg-gag---
              Tasmanian devil  ctttacta------cc-ccc------tcc-cttcatcctgtgtgaggactt----------ga-gag---
                      Wallaby  ctttacta------ta-ccc------tcc-ctccaccatgtgtgaggactt----------gg-gag---
                     Platypus  cccgtctg------tc-atc---tgtctc-tgtcgtt------------------------tg-ggg---
           American alligator  ctgggccg------gg-ctg---gggctg-ccccgtctgcac-------------------gt-gcg---
              Green seaturtle  ctccccca------gg-cac---cggctc-ctgcatcctctc-------------------ag-gcg---
               Painted turtle  ctcccccgccccccag-tac---cggcta-ctgcatcctctc-------------------ag-gcg---
     Chinese softshell turtle  ctccctcc------ag-cac---cggctt-ctgcacagtctc-------------------ag-gcg---
                       Lizard  tgcctccg------ag--------ggctt-ccccgcaat----------------------ag-gcg---
          Pundamilia nyererei  ======================================================================
          Princess of Burundi  ======================================================================
       Yellowbelly pufferfish  ======================================================================
                  Spotted gar  ======================================================================
                         Fugu  ======================================================================
     Mexican tetra (cavefish)  ======================================================================
                  Stickleback  ======================================================================
                  Zebra mbuna  ======================================================================
                    Zebrafish  ======================================================================
        Burton's mouthbreeder  ======================================================================
           Southern platyfish  ======================================================================
                      Chicken  ======================================================================
                 Mallard duck  ======================================================================
                   Budgerigar  ======================================================================
                  Zebra finch  ======================================================================
             Peregrine falcon  ======================================================================
                 Saker falcon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
          Medium ground finch  ======================================================================
          Collared flycatcher  ======================================================================
           Tibetan ground jay  ======================================================================
       White-throated sparrow  ======================================================================
                   Coelacanth  ======================================================================

                        Human  ----g---------tgac--agc----------a
                        Chimp  ----t---------tgac--agc----------a
                      Gorilla  ----g---------tgac--agc----------a
                    Orangutan  ----g---------tgac--agc----------a
                       Gibbon  ----g---------tgac--agc----------a
                       Rhesus  ----g---------tgac--aga----------a
          Crab-eating macaque  ----g---------tgac--aga----------a
                       Baboon  ----g---------tgac--aga----------a
                 Green monkey  ----g---------tgac--aga----------a
                     Marmoset  ----g---------tgac--agc----------a
              Squirrel monkey  ----g---------tgac--agc----------a
                     Bushbaby  ----g---------tgac--agt----------a
           Chinese tree shrew  ----g---------tgac--agc----------a
                     Squirrel  ----a---------cgac--agc----------a
       Lesser Egyptian jerboa  ----g---------gggg--agc----------a
                 Prairie vole  gat-g---------cgag--agt----------a
              Chinese hamster  ----g---------cgag--agt----------a
               Golden hamster  ----g---------cgag--agt----------a
                        Mouse  ----g---------cgag--ggt----------a
                          Rat  ----a---------tgag--agt----------a
               Naked mole-rat  ----g---------cgac--agc----------a
                   Guinea pig  ----g---------tgac--agc----------a
                   Chinchilla  ----g---------tgac--agc----------a
             Brush-tailed rat  ----g---------tgac--agc----------a
                       Rabbit  ----a---------ggac--agc----------a
                         Pika  ----g---------tgat--agc----------a
                          Pig  ----g---------tggc--agc----------a
                       Alpaca  ----g---------tgac--agc----------a
               Bactrian camel  ----g---------tgac--agc----------a
                      Dolphin  ----g---------tgac--agc----------a
                 Killer whale  ----g---------tgac--agc----------a
             Tibetan antelope  ttgtg---------tgac--agc----------a
                          Cow  gtgtg---------tgac--agc----------a
                        Sheep  ttgtg---------tgac--agc----------a
                Domestic goat  ttgtg---------tgac--agc----------a
                        Horse  ----g---------tgac--agc----------t
             White rhinoceros  ----g---------tgac--agc----------t
                          Cat  ----g---------tgac--agc----------c
                          Dog  ----g---------tgac--agc----------a
                      Ferret   ----g---------tgac--agc----------a
                        Panda  ----g---------tgac--agc----------a
               Pacific walrus  ----g---------tgac--agc----------a
                 Weddell seal  ----g---------tgac--agc----------a
             Black flying-fox  ----g---------tgac--agc----------a
                      Megabat  ----g---------tgac--agc----------a
                Big brown bat  ----g---------tgac--agc----------a
         David's myotis (bat)  ----g---------tgac--agc----------a
                     Microbat  ----g---------tgac--agc----------a
                     Hedgehog  ----gtgggttg--tgac--agc----------a
                        Shrew  ----gcgggggacgtgac--agc----------g
              Star-nosed mole  ----gcggggga--tgac--agc----------a
                     Elephant  ----g---------tgactgagc----------a
          Cape elephant shrew  ----g---------tgactgagc----------a
                      Manatee  ----g---------tgactgagc----------a
             Cape golden mole  ----g---------agactgatc----------a
                       Tenrec  ----a---------taattgagc----------a
                     Aardvark  ----g---------tgactgaga----------a
                    Armadillo  ----g---------taactgagt----------a
                      Opossum  ----g---------agat--ctc----------a
              Tasmanian devil  ----g---------agac--ctcactgatcctta
                      Wallaby  ----g---------agac--tta----------a
                     Platypus  ----a---------tgac--gcc----------a
           American alligator  ----------------gg--a-------------
              Green seaturtle  ----c---------cccc--c-------------
               Painted turtle  ----c---------ccag--c-------------
     Chinese softshell turtle  ----c---------cccg--a-------------
                       Lizard  ----c---------cggt--t-------------
          Pundamilia nyererei  ==================================
          Princess of Burundi  ==================================
       Yellowbelly pufferfish  ==================================
                  Spotted gar  ==================================
                         Fugu  ==================================
     Mexican tetra (cavefish)  ==================================
                  Stickleback  ==================================
                  Zebra mbuna  ==================================
                    Zebrafish  ==================================
        Burton's mouthbreeder  ==================================
           Southern platyfish  ==================================
                      Chicken  ==================================
                 Mallard duck  ==================================
                   Budgerigar  ==================================
                  Zebra finch  ==================================
             Peregrine falcon  ==================================
                 Saker falcon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Rock pigeon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
          Medium ground finch  ==================================
          Collared flycatcher  ==================================
           Tibetan ground jay  ==================================
       White-throated sparrow  ==================================
                   Coelacanth  ==================================

Inserts between block 27 and 28 in window
B D                  Opossum 58bp
B D          Tasmanian devil 27bp
B D                  Wallaby 23bp

Alignment block 28 of 956 in window, 146637473 - 146637526, 54 bps 
B D                     Human  g-------cccccaac----ac-----------------------cgcgggaag-tat----a-------
B D                     Chimp  g-------cccccaac----ac-----------------------cgcgggaag-tag----a-------
B D                   Gorilla  g-------cccccaac----ac-----------------------tgcgggaag-tag----a-------
B D                 Orangutan  g-------cccccaac----ac-----------------------cgcgggaag-tag----a-------
B D                    Gibbon  g-------cccccaat----ac-----------------------cgcgggaag-tag----a-------
B D                    Rhesus  g-------cccccaac----ac-----------------------cgcgggaag-tag----a-------
B D       Crab-eating macaque  g-------cccccaac----ac-----------------------cgcgggaag-tag----a-------
B D                    Baboon  g-------cccccaac----ac-----------------------cgcgggaag-tag----a-------
B D              Green monkey  g-------cccccaac----ac-----------------------cgcgggaag-tag----a-------
B D                  Marmoset  g-------cccccaac----ac-----------------------cgcagg-----------a-------
B D           Squirrel monkey  g-------cccccaac----ac-----------------------cgcagg-----------a-------
B D                  Bushbaby  g-------cccccaac----at-----------------------tgcgggaag-tag----a-------
           Chinese tree shrew  gcc-----cccccatc----ac-----------------------cgtggaa----------g-------
B D                  Squirrel  g-------ctcccaac----ac-----------------------cgcagaaag-tag----a-------
       Lesser Egyptian jerboa  a-------ctccaaac----ac-----------------------tgtaggaag-tag----a-------
                 Prairie vole  g-------tcccccaa----ac-----------------------cacaggaag-tag----a-------
B D           Chinese hamster  g-------ccccaaac----at-----------------------tacaggaag-tag----a-------
               Golden hamster  g-------ccccaagc----at-----------------------cacaggaag-cag----a-------
B D                     Mouse  g-------ccccaagt----gc-----------------------cgcaggacg-gag----g-------
B D                       Rat  g-------ccccaaac----ac-----------------------cgcaggacg-tag----a-------
B D            Naked mole-rat  g-------ccccccag----ag-----------------------cacagaaag-tag----a-------
B D                Guinea pig  gcagcagccccccaag----ag-----------------------cacagaaag-tag----a-------
                   Chinchilla  gcag----tccccgag----ag-----------------------cagggaaag-tag----a-------
             Brush-tailed rat  gcag----cccccaag----ag-----------------------cgaggaaag-tag----a-------
B D                    Rabbit  g-------cccccaac----cc-----------------------ggtgggagg-ccg----a-------
B D                      Pika  g-------cccccaac----cg-----------------------cgtgggaagtccg----a-------
B D                       Pig  g-------cccccagc----ac-----------------------cgaggaaag-tag----a-------
B D                    Alpaca  g-------cccccaac----ac-----------------------cgagggaag-tag----a-------
               Bactrian camel  g-------cccccaac----ac-----------------------cgagggaag-tag----a-------
B D                   Dolphin  g--------ccccagc----ac-----------------------agaggaaag-tag----a-------
                 Killer whale  g--------ccccagc----ac-----------------------agaggaaag-tag----a-------
             Tibetan antelope  c-------tccccaac----ac-----------------------cgagagaag-tag----a-------
B D                       Cow  g-------tccccaac----ac-----------------------cgagagaag-tag----a-------
B D                     Sheep  c-------tccccagc----ac-----------------------cgagagaag-tgg----a-------
                Domestic goat  c-------tccccaac----ac-----------------------cgagagaag-tag----a-------
B D                     Horse  g-------ccccccgc----ac-----------------------tgaggtaag-tagagaca-------
B D          White rhinoceros  g-------cctccagc----ac-----------------------ggaaggaag-ta-----a-------
B D                       Cat  g-------cccctaac----gt-----------------------cgagggaag-tag----a-------
B D                       Dog  g-------cccctaac----at-----------------------cgagggaag-tag----a-------
B D                   Ferret   g-------cccctaac----at-----------------------caagggaaa-tag----a-------
B D                     Panda  g-------cccctacc----at-----------------------cgagtgaaa-tag----a-------
               Pacific walrus  g-------cccctaac----at-----------------------cgagggaat-tag----a-------
                 Weddell seal  g-------cccctaac----at-----------------------cgagggaag-tag----a-------
             Black flying-fox  g-------ctcccaac----aa-----------------------c-ggggaag-tag----a-------
B D                   Megabat  g-------ctcccaac----aa-----------------------cgggggaag-tag----a-------
                Big brown bat  g-------cccccaac----ac-----------------------caaggaaag-tag----a-------
         David's myotis (bat)  g-------cccccaac----ac-----------------------caaggaaag-tag----a-------
B D                  Microbat  g-------cccccaac----ac-----------------------caaggaaag-tag----a-------
B D                  Hedgehog  g-------ccccagac----gc-----------------------tgaaggaaa-aga----a-------
B D                     Shrew  g-------ctccaaac----ct-----------------------cgagggagc-ggg----a-------
              Star-nosed mole  g-------tccccttc----gt-----------------------cgaggaaag-aag----a-------
B D                  Elephant  g-------cccccaac----ac-----------------------cgcgggaag-taa----a-------
          Cape elephant shrew  g-------cccccaac----ac-----------------------caagggaag-taa----a-------
B D                   Manatee  g-------cccccaac----ac-----------------------tgcgggaag-tag----c-------
             Cape golden mole  g-------cccccaac----ac-----------------------cacgggatg-tag----a-------
B D                    Tenrec  g-------cccccaac----ac-----------------------cacggaaag-tag----atctgact
                     Aardvark  g-------cccccagg----ac-----------------------cacgggaag-taa----a-------
B D                 Armadillo  t-------ctcccaac----at-----------------------cataggaaa-tag----a-------
B D           Tasmanian devil  c-------aaccaaac----ac-----------------------cgtgggaga-tgg----g-------
B D                   Wallaby  c-------aaccaaac----ac-----------------------cgtgggaga-tgg----t-------
B D                  Platypus  g-------ccccagtca---at-----------------------cgagacatt-tat----t-------
B D        American alligator  ----------------gcctcc----------------------gggatggaaa-taa----g-------
  D           Green seaturtle  ----------------gcgctc-----------------------ggctaaagc-taa----a-------
  D            Painted turtle  ----------------gcgctc-----------------------tgctaaagc-taa----a-------
  D  Chinese softshell turtle  ----------------gcgctc-----------------------ggctaaagc-tat----c-------
B D                    Lizard  ----------------gtcgacaggccgagaggagcaacggaggaggacgaagc-agg----a-------
         Pundamilia nyererei  ======================================================================
         Princess of Burundi  ======================================================================
      Yellowbelly pufferfish  ======================================================================
                 Spotted gar  ===================================