Multiz Alignments of 100 Vertebrates
 

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Alignment block 1 of 341 in window, 30842490 - 30842517, 28 bps 
B D                   Human  aaagaccttttgatgtataagacctaat
B D                   Chimp  aaagaccttttgatgtataagacctaat
B D                 Gorilla  aaagaccttttgatgtataagacctaat
B D               Orangutan  aaagaccttttgatgtataagacctaat
B D                  Gibbon  aaagaccttttgatgtataagacctaac
B D                  Rhesus  aaagaccttttgatgtataagacctaat
B D     Crab-eating macaque  aaagaccttttgatgtataagacctaat
B D                  Baboon  aaagaccttttgatgtataagacctaat
B D            Green monkey  aaagaccttttgatgtataagacctaat
B D                Marmoset  gaagaacttttgatgtataagacccaat
B D         Squirrel monkey  gaagaccttttgatgtatgagacacgat
B D                   Shrew  ============================
    Lesser Egyptian jerboa  ============================
       Cape elephant shrew  ============================
B D                Hedgehog  ============================
          Brush-tailed rat  ============================
                Chinchilla  ============================
              Prairie vole  ============================
B D                  Tenrec  ============================
B D         Chinese hamster  ============================
B D                   Mouse  ============================
            Golden hamster  ============================
B D                    Pika  ============================
B D                     Rat  ============================
           Star-nosed mole  ============================
          Black flying-fox  ============================
              Weddell seal  ============================
              Killer whale  ============================
B D                   Panda  ============================
             Big brown bat  ============================
B D                     Cow  ============================
             Domestic goat  ============================
B D                   Sheep  ============================
          Tibetan antelope  ============================
B D                Squirrel  ============================
        Chinese tree shrew  ============================
B D                     Dog  ============================
B D                 Ferret   ============================
B D                     Cat  ============================
            Pacific walrus  ============================
B D                 Dolphin  ============================
B D                 Manatee  ============================
B D                Elephant  ============================
B D                Bushbaby  ============================
B D          Naked mole-rat  ============================
B D                  Rabbit  ============================
            Bactrian camel  ============================
B D                 Megabat  ============================
                  Aardvark  ============================
          Cape golden mole  ============================
B D                     Pig  ============================
B D        White rhinoceros  ============================
B D                   Horse  ============================
B D                  Alpaca  ============================

Alignment block 2 of 341 in window, 30842518 - 30842530, 13 bps 
B D                   Human  tgtaatacattta
B D                   Chimp  tgtaatacattta
B D                 Gorilla  tgtaatacattta
B D               Orangutan  tgtaatacattat
B D                  Gibbon  ggtaatacattta
B D                  Rhesus  tgtaatacattta
B D     Crab-eating macaque  tgtaatacattta
B D                  Baboon  tgtaatacattta
B D            Green monkey  tgtaatacattta
B D         Squirrel monkey  tgtaatacattta
B D                   Shrew  =============
    Lesser Egyptian jerboa  =============
       Cape elephant shrew  =============
B D                Hedgehog  =============
          Brush-tailed rat  =============
                Chinchilla  =============
              Prairie vole  =============
B D                  Tenrec  =============
B D         Chinese hamster  =============
B D                   Mouse  =============
            Golden hamster  =============
B D                    Pika  =============
B D                     Rat  =============
           Star-nosed mole  =============
          Black flying-fox  =============
              Weddell seal  =============
              Killer whale  =============
B D                   Panda  =============
             Big brown bat  =============
B D                     Cow  =============
             Domestic goat  =============
B D                   Sheep  =============
          Tibetan antelope  =============
B D                Squirrel  =============
        Chinese tree shrew  =============
B D                     Dog  =============
B D                 Ferret   =============
B D                     Cat  =============
            Pacific walrus  =============
B D                 Dolphin  =============
B D                 Manatee  =============
B D                Elephant  =============
B D                Bushbaby  =============
B D          Naked mole-rat  =============
B D                  Rabbit  =============
            Bactrian camel  =============
B D                 Megabat  =============
                  Aardvark  =============
          Cape golden mole  =============
B D                     Pig  =============
B D        White rhinoceros  =============
B D                   Horse  =============
B D                  Alpaca  =============
B D                Marmoset  -------------

Inserts between block 2 and 3 in window
B D                 Rhesus 921bp
B D    Crab-eating macaque 960bp
B D                 Baboon 961bp
B D           Green monkey 971bp
B D        Squirrel monkey 868bp

Alignment block 3 of 341 in window, 30842531 - 30842547, 17 bps 
B D                   Human  tttttttttaattaatt
B D                   Chimp  -ttttttttaattaa-t
B D                 Gorilla  tttttttttaattaatt
B D               Orangutan  ttatttatttatttact
B D                  Gibbon  ---ttttttaattaatt
B D                   Shrew  =================
    Lesser Egyptian jerboa  =================
       Cape elephant shrew  =================
B D                Hedgehog  =================
          Brush-tailed rat  =================
                Chinchilla  =================
              Prairie vole  =================
B D                  Tenrec  =================
B D         Chinese hamster  =================
B D                   Mouse  =================
            Golden hamster  =================
B D                    Pika  =================
B D                     Rat  =================
           Star-nosed mole  =================
          Black flying-fox  =================
              Weddell seal  =================
              Killer whale  =================
B D                   Panda  =================
             Big brown bat  =================
B D                     Cow  =================
             Domestic goat  =================
B D                   Sheep  =================
          Tibetan antelope  =================
B D                Squirrel  =================
        Chinese tree shrew  =================
B D                     Dog  =================
B D                 Ferret   =================
B D                     Cat  =================
            Pacific walrus  =================
B D                 Dolphin  =================
B D                 Manatee  =================
B D                Elephant  =================
B D                Bushbaby  =================
B D          Naked mole-rat  =================
B D                  Rabbit  =================
            Bactrian camel  =================
B D                 Megabat  =================
                  Aardvark  =================
B D                  Baboon  =================
          Cape golden mole  =================
B D                     Pig  =================
B D        White rhinoceros  =================
B D         Squirrel monkey  =================
B D            Green monkey  =================
B D     Crab-eating macaque  =================
B D                  Rhesus  =================
B D                   Horse  =================
B D                  Alpaca  =================
B D                Marmoset  -----------------

Inserts between block 3 and 4 in window
B D              Orangutan 4bp
B D                 Gibbon 2bp

Alignment block 4 of 341 in window, 30842548 - 30842843, 296 bps 
B D                   Human  ttttttttttttgagacggagtctcactatcgcttaggctggagtgcagtggtgcgatctcggctcactg
B D                   Chimp  taatttttttttgagacggagtctcactatcgctcaggctggagtgcagtggtgcgatctcgactcactg
B D               Orangutan  tacttattttttgagacggagtcttgctcttgcccaggctggagtgcagtggcgcgatctcggctcacgg
B D                  Gibbon  ttttttttttttgagacggagtctcactatcgcccaggctggagtccagtggtgcgatctcggctcactg
B D                   Shrew  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
       Cape elephant shrew  ======================================================================
B D                Hedgehog  ======================================================================
          Brush-tailed rat  ======================================================================
                Chinchilla  ======================================================================
              Prairie vole  ======================================================================
B D                  Tenrec  ======================================================================
B D         Chinese hamster  ======================================================================
B D                   Mouse  ======================================================================
            Golden hamster  ======================================================================
B D                    Pika  ======================================================================
B D                     Rat  ======================================================================
           Star-nosed mole  ======================================================================
          Black flying-fox  ======================================================================
              Weddell seal  ======================================================================
              Killer whale  ======================================================================
B D                   Panda  ======================================================================
             Big brown bat  ======================================================================
B D                     Cow  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
B D                Squirrel  ======================================================================
        Chinese tree shrew  ======================================================================
B D                     Dog  ======================================================================
B D                 Ferret   ======================================================================
B D                     Cat  ======================================================================
            Pacific walrus  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
B D                Bushbaby  ======================================================================
B D          Naked mole-rat  ======================================================================
B D                  Rabbit  ======================================================================
            Bactrian camel  ======================================================================
B D                 Megabat  ======================================================================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Aardvark  ======================================================================
B D                  Baboon  ======================================================================
          Cape golden mole  ======================================================================
B D                     Pig  ======================================================================
B D        White rhinoceros  ======================================================================
B D         Squirrel monkey  ======================================================================
B D            Green monkey  ======================================================================
B D     Crab-eating macaque  ======================================================================
B D                  Rhesus  ======================================================================
B D                   Horse  ======================================================================
B D                  Alpaca  ======================================================================
B D                Marmoset  ----------------------------------------------------------------------

                      Human  caagctctgcctcccaggttcatgccattctcttgcctcagcctcccgagtagctgggactacaggcacc
                      Chimp  caagctctgcctcccaggttcatgccattctcttgcctcagcctcccgagtagctgggactacaggcacc
                  Orangutan  caagctccgcctcccaggttcacgccattctcctgcctcagcctcccaagtagctgggactacaggcacc
                     Gibbon  caagctctgcctcccaagttcacgtcattctcctgcctcagcctcccgagtagctgggactacaggcacc
                      Shrew  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
        Cape elephant shrew  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
                 Chinchilla  ======================================================================
               Prairie vole  ======================================================================
                     Tenrec  ======================================================================
            Chinese hamster  ======================================================================
                      Mouse  ======================================================================
             Golden hamster  ======================================================================
                       Pika  ======================================================================
                        Rat  ======================================================================
            Star-nosed mole  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                   Squirrel  ======================================================================
         Chinese tree shrew  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
                   Bushbaby  ======================================================================
             Naked mole-rat  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                    Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                   Aardvark  ======================================================================
                     Baboon  ======================================================================
           Cape golden mole  ======================================================================
                        Pig  ======================================================================
           White rhinoceros  ======================================================================
            Squirrel monkey  ======================================================================
               Green monkey  ======================================================================
        Crab-eating macaque  ======================================================================
                     Rhesus  ======================================================================
                      Horse  ======================================================================
                     Alpaca  ======================================================================
                   Marmoset  ----------------------------------------------------------------------

                      Human  cgctaccatgcccggctaattttttttgtatttttagtagagacggggtttcaccctgttagccaggatg
                      Chimp  cgctaccatgcccggctaattttttttgtatttttagtagagacggggtttcaccctgttagccaggatg
                  Orangutan  cgctaccatgcccggctaattttttttgtatttttagtagagatggggttccaccatgttagccaggctg
                     Gibbon  cgccaccatgcctggctaa-tttttttgtatttttagtagagacggggtttcaccatgttagccaggatg
                      Shrew  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
        Cape elephant shrew  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
                 Chinchilla  ======================================================================
               Prairie vole  ======================================================================
                     Tenrec  ======================================================================
            Chinese hamster  ======================================================================
                      Mouse  ======================================================================
             Golden hamster  ======================================================================
                       Pika  ======================================================================
                        Rat  ======================================================================
            Star-nosed mole  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                   Squirrel  ======================================================================
         Chinese tree shrew  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
                   Bushbaby  ======================================================================
             Naked mole-rat  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                    Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                   Aardvark  ======================================================================
                     Baboon  ======================================================================
           Cape golden mole  ======================================================================
                        Pig  ======================================================================
           White rhinoceros  ======================================================================
            Squirrel monkey  ======================================================================
               Green monkey  ======================================================================
        Crab-eating macaque  ======================================================================
                     Rhesus  ======================================================================
                      Horse  ======================================================================
                     Alpaca  ======================================================================
                   Marmoset  ----------------------------------------------------------------------

                      Human  gcctcgatctcctgacctcatgatccatctgcctcagcctcccaaagtgctgggattacaggtgtaagcc
                      Chimp  gcctcgatctcctgacctcatgatccatctgcctcagcctcccaaagtgctgggattacaggtgtaagcc
                  Orangutan  gtctcgatctgctgacctcgtgatccgcctgcctcagcctcccaaagtgctgggattacaggtgtgagcc
                     Gibbon  gcctcgatctcctgacctcataatccacctgactcagcctcccaaagtgctgggattacaggtgtgagcc
                      Shrew  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
        Cape elephant shrew  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
                 Chinchilla  ======================================================================
               Prairie vole  ======================================================================
                     Tenrec  ======================================================================
            Chinese hamster  ======================================================================
                      Mouse  ======================================================================
             Golden hamster  ======================================================================
                       Pika  ======================================================================
                        Rat  ======================================================================
            Star-nosed mole  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                   Squirrel  ======================================================================
         Chinese tree shrew  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
                   Bushbaby  ======================================================================
             Naked mole-rat  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                    Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                   Aardvark  ======================================================================
                     Baboon  ======================================================================
           Cape golden mole  ======================================================================
                        Pig  ======================================================================
           White rhinoceros  ======================================================================
            Squirrel monkey  ======================================================================
               Green monkey  ======================================================================
        Crab-eating macaque  ======================================================================
                     Rhesus  ======================================================================
                      Horse  ======================================================================
                     Alpaca  ======================================================================
                   Marmoset  ----------------------------------------------------------------------

                      Human  accgcgcctggccagc
                      Chimp  accgcgcctggccagc
                  Orangutan  actgtgcccggccagc
                     Gibbon  accgcacctggccagc
                      Shrew  ================
     Lesser Egyptian jerboa  ================
        Cape elephant shrew  ================
                   Hedgehog  ================
           Brush-tailed rat  ================
                 Chinchilla  ================
               Prairie vole  ================
                     Tenrec  ================
            Chinese hamster  ================
                      Mouse  ================
             Golden hamster  ================
                       Pika  ================
                        Rat  ================
            Star-nosed mole  ================
           Black flying-fox  ================
               Weddell seal  ================
               Killer whale  ================
                      Panda  ================
              Big brown bat  ================
                        Cow  ================
              Domestic goat  ================
                      Sheep  ================
           Tibetan antelope  ================
                   Squirrel  ================
         Chinese tree shrew  ================
                        Dog  ================
                    Ferret   ================
                        Cat  ================
             Pacific walrus  ================
                    Dolphin  ================
                    Manatee  ================
                   Elephant  ================
                   Bushbaby  ================
             Naked mole-rat  ================
                     Rabbit  ================
             Bactrian camel  ================
                    Megabat  ================
                    Gorilla  NNNNNNNNNNNNNNNN
                   Aardvark  ================
                     Baboon  ================
           Cape golden mole  ================
                        Pig  ================
           White rhinoceros  ================
            Squirrel monkey  ================
               Green monkey  ================
        Crab-eating macaque  ================
                     Rhesus  ================
                      Horse  ================
                     Alpaca  ================
                   Marmoset  ----------------

Alignment block 5 of 341 in window, 30842844 - 30843055, 212 bps 
B D                   Human  tgtaatacatttaaatgctaagtctccaccctaaggtgcacatgggtcatat----gcaatatactagtt
B D                   Chimp  tgtaatacatttaaatgctaagtctccaccctaaggtgcacatgggtcgtat----gcaatatactagtt
B D               Orangutan  tgtaatacatttaaatgctaagtctccaccctaaggtgcacatgggtcgtatgcaagcaatatactagtt
B D                  Gibbon  tgtaatacatttaaatgctaagtctccaccctaaggtgcacatgggtcgtat----gcaatatactagtt
B D                Marmoset  tgtaatacatttaaatgctaagtctccaccctaaggtgcacatgggtcatat----gcaacatactagtt
B D                   Shrew  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
       Cape elephant shrew  ======================================================================
B D                Hedgehog  ======================================================================
          Brush-tailed rat  ======================================================================
                Chinchilla  ======================================================================
              Prairie vole  ======================================================================
B D                  Tenrec  ======================================================================
B D         Chinese hamster  ======================================================================
B D                   Mouse  ======================================================================
            Golden hamster  ======================================================================
B D                    Pika  ======================================================================
B D                     Rat  ======================================================================
           Star-nosed mole  ======================================================================
          Black flying-fox  ======================================================================
              Weddell seal  ======================================================================
              Killer whale  ======================================================================
B D                   Panda  ======================================================================
             Big brown bat  ======================================================================
B D                     Cow  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
B D                Squirrel  ======================================================================
        Chinese tree shrew  ======================================================================
B D                     Dog  ======================================================================
B D                 Ferret   ======================================================================
B D                     Cat  ======================================================================
            Pacific walrus  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
B D                Bushbaby  ======================================================================
B D          Naked mole-rat  ======================================================================
B D                  Rabbit  ======================================================================
            Bactrian camel  ======================================================================
B D                 Megabat  ======================================================================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Aardvark  ======================================================================
B D                  Baboon  ======================================================================
          Cape golden mole  ======================================================================
B D                     Pig  ======================================================================
B D        White rhinoceros  ======================================================================
B D         Squirrel monkey  ======================================================================
B D            Green monkey  ======================================================================
B D     Crab-eating macaque  ======================================================================
B D                  Rhesus  ======================================================================
B D                   Horse  ======================================================================
B D                  Alpaca  ======================================================================

                      Human  tattcagtatatgtgcttcaggaccactttcatgaatattcatagctccttctgtaacctgttgaatatg
                      Chimp  tattcagtatatgtgcttcaggaccactttcatgaatattcatagctccttctgtaacctgttgaatatg
                  Orangutan  tattcagtatatgtgcttcaggaccactttcatgaatattcatagctccttctgtaacctgttgaatatg
                     Gibbon  tattcagtatacgtgcttcaggaccactttcatgaatattcatagctccttctgtaacctgtggaatatg
                   Marmoset  tattcagtatacctgcttcaggaccac-tgcatgaataatcatagctctttctataacctgttaaatatg
                      Shrew  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
        Cape elephant shrew  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
                 Chinchilla  ======================================================================
               Prairie vole  ======================================================================
                     Tenrec  ======================================================================
            Chinese hamster  ======================================================================
                      Mouse  ======================================================================
             Golden hamster  ======================================================================
                       Pika  ======================================================================
                        Rat  ======================================================================
            Star-nosed mole  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                   Squirrel  ======================================================================
         Chinese tree shrew  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
                   Bushbaby  ======================================================================
             Naked mole-rat  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                    Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                   Aardvark  ======================================================================
                     Baboon  ======================================================================
           Cape golden mole  ======================================================================
                        Pig  ======================================================================
           White rhinoceros  ======================================================================
            Squirrel monkey  ======================================================================
               Green monkey  ======================================================================
        Crab-eating macaque  ======================================================================
                     Rhesus  ======================================================================
                      Horse  ======================================================================
                     Alpaca  ======================================================================

                      Human  tatacttggccaacccagtcagattaaattcctttcttattcctcctcgtccctcaaagttcattctcta
                      Chimp  tatacttggccaacccagtcagagtaaattcctttcttattcctccccgtccctcaaagttccttctcta
                  Orangutan  tatacttggccaacccagtcagcttaaattcctgttttattcctctccctccctcaaagttccttctcta
                     Gibbon  tatacttgcccaacccagtcagctaaaattcctgtcttattcctctccctacctcaaacttccttctcta
                   Marmoset  tatacttggccaacccagtcagctttcatgcctgtcttatccctctccctccctcaaagttccttctctg
                      Shrew  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
        Cape elephant shrew  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
                 Chinchilla  ======================================================================
               Prairie vole  ======================================================================
                     Tenrec  ======================================================================
            Chinese hamster  ======================================================================
                      Mouse  ======================================================================
             Golden hamster  ======================================================================
                       Pika  ======================================================================
                        Rat  ======================================================================
            Star-nosed mole  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                   Squirrel  ======================================================================
         Chinese tree shrew  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
                   Bushbaby  ======================================================================
             Naked mole-rat  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                    Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                   Aardvark  ======================================================================
                     Baboon  ======================================================================
           Cape golden mole  ======================================================================
                        Pig  ======================================================================
           White rhinoceros  ======================================================================
            Squirrel monkey  ======================================================================
               Green monkey  ======================================================================
        Crab-eating macaque  ======================================================================
                     Rhesus  ======================================================================
                      Horse  ======================================================================
                     Alpaca  ======================================================================

                      Human  ggctct
                      Chimp  ggctct
                  Orangutan  ggctct
                     Gibbon  ggctc-
                   Marmoset  ggctct
                      Shrew  ======
     Lesser Egyptian jerboa  ======
        Cape elephant shrew  ======
                   Hedgehog  ======
           Brush-tailed rat  ======
                 Chinchilla  ======
               Prairie vole  ======
                     Tenrec  ======
            Chinese hamster  ======
                      Mouse  ======
             Golden hamster  ======
                       Pika  ======
                        Rat  ======
            Star-nosed mole  ======
           Black flying-fox  ======
               Weddell seal  ======
               Killer whale  ======
                      Panda  ======
              Big brown bat  ======
                        Cow  ======
              Domestic goat  ======
                      Sheep  ======
           Tibetan antelope  ======
                   Squirrel  ======
         Chinese tree shrew  ======
                        Dog  ======
                    Ferret   ======
                        Cat  ======
             Pacific walrus  ======
                    Dolphin  ======
                    Manatee  ======
                   Elephant  ======
                   Bushbaby  ======
             Naked mole-rat  ======
                     Rabbit  ======
             Bactrian camel  ======
                    Megabat  ======
                    Gorilla  NNNNNN
                   Aardvark  ======
                     Baboon  ======
           Cape golden mole  ======
                        Pig  ======
           White rhinoceros  ======
            Squirrel monkey  ======
               Green monkey  ======
        Crab-eating macaque  ======
                     Rhesus  ======
                      Horse  ======
                     Alpaca  ======

Alignment block 6 of 341 in window, 30843056 - 30843058, 3 bps 
B D                   Human  gcc
B D                   Chimp  gcc
B D               Orangutan  gcc
B D     Crab-eating macaque  gca
B D                  Baboon  gca
B D                Marmoset  gcc
B D                   Shrew  ===
    Lesser Egyptian jerboa  ===
       Cape elephant shrew  ===
B D                Hedgehog  ===
          Brush-tailed rat  ===
                Chinchilla  ===
              Prairie vole  ===
B D                  Tenrec  ===
B D         Chinese hamster  ===
B D                   Mouse  ===
            Golden hamster  ===
B D                    Pika  ===
B D                     Rat  ===
           Star-nosed mole  ===
          Black flying-fox  ===
              Weddell seal  ===
              Killer whale  ===
B D                   Panda  ===
             Big brown bat  ===
B D                     Cow  ===
             Domestic goat  ===
B D                   Sheep  ===
          Tibetan antelope  ===
B D                Squirrel  ===
        Chinese tree shrew  ===
B D                     Dog  ===
B D                 Ferret   ===
B D                     Cat  ===
            Pacific walrus  ===
B D                 Dolphin  ===
B D                 Manatee  ===
B D                Elephant  ===
B D                Bushbaby  ===
B D          Naked mole-rat  ===
B D                  Rabbit  ===
            Bactrian camel  ===
B D                  Gibbon  ---
B D                 Megabat  ===
B D                 Gorilla  NNN
                  Aardvark  ===
          Cape golden mole  ===
B D                     Pig  ===
B D        White rhinoceros  ===
B D         Squirrel monkey  ===
B D            Green monkey  ===
B D                  Rhesus  ===
B D                   Horse  ===
B D                  Alpaca  ===

Alignment block 7 of 341 in window, 30843059 - 30843156, 98 bps 
B D                   Human  agaggctatgcttcccactagtccgaatggtacattgtaggctgcaactctttatttttattttattttt
B D                   Chimp  agaggctatgcttcccactagtccaaatggtacattgtaggctgcaactctttatttttattttattttt
B D               Orangutan  agaggctatgcttcccactagtcagaatggtacattgtaggctgcaactctttatttttattttattttt
B D                  Gibbon  --------tgcttcccactagtcagaatggtacattgtaggctgcaactctttatttttattttattttt
B D                  Rhesus  agaggctatgcttcccactagtcagaatggcacattgtaggctgtaactctttatttttattttattttt
B D     Crab-eating macaque  agaggctatgcttcccactagtcagaatggcacattgtaggctgtaactctttatttttattttattttt
B D                  Baboon  agaggctatgcttcccactagtcagaatggcacattgtaggctgtaactctttatttttattttattttt
B D            Green monkey  agaggctatgcttcccactagtcagaatggcacattgtaggctgcaactctttatttgtattttattttt
B D                Marmoset  agaggctatactgcccactagtcagaatggtacattgtaggttgcaagattttatttttattttattttt
B D                   Shrew  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
       Cape elephant shrew  ======================================================================
B D                Hedgehog  ======================================================================
          Brush-tailed rat  ======================================================================
                Chinchilla  ======================================================================
              Prairie vole  ======================================================================
B D                  Tenrec  ======================================================================
B D         Chinese hamster  ======================================================================
B D                   Mouse  ======================================================================
            Golden hamster  ======================================================================
B D                    Pika  ======================================================================
B D                     Rat  ======================================================================
           Star-nosed mole  ======================================================================
          Black flying-fox  ======================================================================
              Weddell seal  ======================================================================
              Killer whale  ======================================================================
B D                   Panda  ======================================================================
             Big brown bat  ======================================================================
B D                     Cow  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
B D                Squirrel  ======================================================================
        Chinese tree shrew  ======================================================================
B D                     Dog  ======================================================================
B D                 Ferret   ======================================================================
B D                     Cat  ======================================================================
            Pacific walrus  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
B D                Bushbaby  ======================================================================
B D          Naked mole-rat  ======================================================================
B D                  Rabbit  ======================================================================
            Bactrian camel  ======================================================================
B D                 Megabat  ======================================================================
B D                 Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                  Aardvark  ======================================================================
          Cape golden mole  ======================================================================
B D                     Pig  ======================================================================
B D        White rhinoceros  ======================================================================
B D         Squirrel monkey  ======================================================================
B D                   Horse  ======================================================================
B D                  Alpaca  ======================================================================

                      Human  aaatttatttttgagacacggtctcact
                      Chimp  aaatttatttttgagacacggtctcact
                  Orangutan  aaatttatttttgagacacggtctcatt
                     Gibbon  aaatttacttttgagacacagtctcact
                     Rhesus  aaatttattgctcagacgcagcctcact
        Crab-eating macaque  aaatttattgctgagacacagcctca--
                     Baboon  aaatttattgctgagactcagcctcact
               Green monkey  aaatttattactgagacgcggtctcact
                   Marmoset  aaatttatttttgagacacggtctcatt
                      Shrew  ============================
     Lesser Egyptian jerboa  ============================
        Cape elephant shrew  ============================
                   Hedgehog  ============================
           Brush-tailed rat  ============================
                 Chinchilla  ============================
               Prairie vole  ============================
                     Tenrec  ============================
            Chinese hamster  ============================
                      Mouse  ============================
             Golden hamster  ============================
                       Pika  ============================
                        Rat  ============================
            Star-nosed mole  ============================
           Black flying-fox  ============================
               Weddell seal  ============================
               Killer whale  ============================
                      Panda  ============================
              Big brown bat  ============================
                        Cow  ============================
              Domestic goat  ============================
                      Sheep  ============================
           Tibetan antelope  ============================
                   Squirrel  ============================
         Chinese tree shrew  ============================
                        Dog  ============================
                    Ferret   ============================
                        Cat  ============================
             Pacific walrus  ============================
                    Dolphin  ============================
                    Manatee  ============================
                   Elephant  ============================
                   Bushbaby  ============================
             Naked mole-rat  ============================
                     Rabbit  ============================
             Bactrian camel  ============================
                    Megabat  ============================
                    Gorilla  NNNNNNNNNNNNNNNNNNNNNNNNNNNN
                   Aardvark  ============================
           Cape golden mole  ============================
                        Pig  ============================
           White rhinoceros  ============================
            Squirrel monkey  ============================
                      Horse  ============================
                     Alpaca  ============================

Alignment block 8 of 341 in window, 30843157 - 30843563, 407 bps 
B D                   Human  ctgtcacccaggctggagtgcagtggtgcaat----cacagctcactgcagcctcgacctcccaggctca
B D                   Chimp  ctgtcacccaggctggagtgcagtggtgcaat----cacagctcactgcagcctcaacctcccgggctca
B D                 Gorilla  ctgtcacccaggctggagtgcagtggtgcaat----cacagctcactgcagcctcgacctcccgggctca
B D               Orangutan  ctgtcacccaggctggagtgcagtggtgcaat----cacagctcactgcagcctcgacctcccgggctca
B D                  Gibbon  ctgtcacccaggctggagtgcagtggtgcgat----aacagctcactgcagcctcgacctcctgggctca
B D                  Rhesus  ctgtcacccaggt----gtggggtggtgcaga----ggctgctcactgcagcctcgactccccgggctca
B D     Crab-eating macaque  ctgtcacccaggctggagtgcagtggtgcaga----ggctgctcactgcagcctcgactccccgggctca
B D                  Baboon  ctgtcacccaggctggagtgcagtggtgcaga----ggctgctcactgcagcctcgactccccgggctca
B D            Green monkey  ctgtcacttaggctggagtgcagtggtgcagatctgggctgctcactgcagtctcgactcctggggctca
B D                Marmoset  ctgtcacccaggctggagtgcagtagcgcaat----cacagctcattgcagcctcgacctcccaggctca
B D                   Shrew  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
       Cape elephant shrew  ======================================================================
B D                Hedgehog  ======================================================================
          Brush-tailed rat  ======================================================================
                Chinchilla  ======================================================================
              Prairie vole  ======================================================================
B D                  Tenrec  ======================================================================
B D         Chinese hamster  ======================================================================
B D                   Mouse  ======================================================================
            Golden hamster  ======================================================================
B D                    Pika  ======================================================================
B D                     Rat  ======================================================================
           Star-nosed mole  ======================================================================
          Black flying-fox  ======================================================================
              Weddell seal  ======================================================================
              Killer whale  ======================================================================
B D                   Panda  ======================================================================
             Big brown bat  ======================================================================
B D                     Cow  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
B D                Squirrel  ======================================================================
        Chinese tree shrew  ======================================================================
B D                     Dog  ======================================================================
B D                 Ferret   ======================================================================
B D                     Cat  ======================================================================
            Pacific walrus  ======================================================================
B D                 Dolphin  ======================================================================
B D                 Manatee  ======================================================================
B D                Elephant  ======================================================================
B D                Bushbaby  ======================================================================
B D          Naked mole-rat  ======================================================================
B D                  Rabbit  ======================================================================
            Bactrian camel  ======================================================================
B D                 Megabat  ======================================================================
                  Aardvark  ======================================================================
          Cape golden mole  ======================================================================
B D                     Pig  ======================================================================
B D        White rhinoceros  ======================================================================
B D         Squirrel monkey  ======================================================================
B D                   Horse  ======================================================================
B D                  Alpaca  ======================================================================

                      Human  ggtgattctccaacctcagcctttcaagtagctgggaccacatccgtgcaccaccaggcccagttaactt
                      Chimp  ggtgattctccaacctcagcctttcaagtagctgggaccacatccatgcaccaccaggcccagttaactt
                    Gorilla  ggtgattctccaacctcagcctttcaagtagctgggaccacatccgtgcaccaccaggcccatttaactt
                  Orangutan  ggtgattctccaacctcagcctttcaagtagctggtaccacatccgtgcaccaccaggcccagttaactt
                     Gibbon  ggtgattctctaacctcagcctttcaagtagctgggaccacatccgtgaaccaccaggcccagttaactt
                     Rhesus  ggtgattctccaatctcaacctttcatgt---tgggaccacatgtatgcgccactgggcccagctaactt
        Crab-eating macaque  ggtgattctccaatctcaacctttcatgt---tgggaccacatgtgtgcgccactgggctcagctaactt
                     Baboon  ggtgattctccaatctcaacctttcacgt---tgggaccacatctgtgcgccactgggcccagctaactt
               Green monkey  ggtgattctccaatctcaacctttcacgt---tggg-----------gcaccactgggcccagctaactt
                   Marmoset  ggtgattctccagcttcagccttccaagtagctgggactacatccgtgcatcaggaagcccagctaactt
                      Shrew  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
        Cape elephant shrew  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
                 Chinchilla  ======================================================================
               Prairie vole  ======================================================================
                     Tenrec  ======================================================================
            Chinese hamster  ======================================================================
                      Mouse  ======================================================================
             Golden hamster  ======================================================================
                       Pika  ======================================================================
                        Rat  ======================================================================
            Star-nosed mole  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                   Squirrel  ======================================================================
         Chinese tree shrew  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
                   Bushbaby  ======================================================================
             Naked mole-rat  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                   Aardvark  ======================================================================
           Cape golden mole  ======================================================================
                        Pig  ======================================================================
           White rhinoceros  ======================================================================
            Squirrel monkey  ======================================================================
                      Horse  ======================================================================
                     Alpaca  ======================================================================

                      Human  tcacaattttcttggagacagggtttcaccatattgatagatgcaggaggtagataagggaaagggtccc
                      Chimp  tcataattttcgtggagacagggtttcaccatattgatagatgcaggaggtagataagggaaagggtccc
                    Gorilla  tcataattttcgtggagacagggtttcaccatattgatagatgcaggaggtagataagggaaagggtccc
                  Orangutan  tcataatttttgtggaaacagggtttcaccatattgatagatgcaggaggtagataaggggaagggtccc
                     Gibbon  tcataatttttgtggagacagggtttcaccatattgatagatgcaggaggtagataaggggaaaggtccc
                     Rhesus  tcataattttcatggtgat--ggttgcaccatatc----gatgcaggaggtagataaggggaagaatccc
        Crab-eating macaque  tcataattttcatggcgat--ggtttcaccatatc----gatgcaggaggtagataaggggaagaatccc
                     Baboon  tcgtaattttcatggcgat--ggtttcaccatatc----gatgcaggaggtagataaggggaagaatccc
               Green monkey  ccataatttttatgacgat--ggtttcactatatt----gatgcaggagatcgataaggggaagaatccc
                   Marmoset  tgataatttttgtggagaca-ggtttcaccatattgttagatgcagggggtagataagcgagagggcccc
                      Shrew  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
        Cape elephant shrew  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
                 Chinchilla  ======================================================================
               Prairie vole  ======================================================================
                     Tenrec  ======================================================================
            Chinese hamster  ======================================================================
                      Mouse  ======================================================================
             Golden hamster  ======================================================================
                       Pika  ======================================================================
                        Rat  ======================================================================
            Star-nosed mole  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                   Squirrel  ======================================================================
         Chinese tree shrew  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
                   Bushbaby  ======================================================================
             Naked mole-rat  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                   Aardvark  ======================================================================
           Cape golden mole  ======================================================================
                        Pig  ======================================================================
           White rhinoceros  ======================================================================
            Squirrel monkey  ======================================================================
                      Horse  ======================================================================
                     Alpaca  ======================================================================

                      Human  cagagaatc-tctgacctgcctatgcacttgggagaagggggtggagccacgggaagttcgtgccatgtg
                      Chimp  cagagaatc-tctgacctgcctatgcacttgggagaagggggtggagccacgggaagttcgtgccatgtg
                    Gorilla  cagagaatc-tctgacctgcctatgcacttgggagaagggggtggagccacgggaagttcgtgccatgtg
                  Orangutan  cagagaatc-tccgacctgcctatgcacttgggagaaggggttggagccacgggaagttcgcaccatgtg
                     Gibbon  cagagaatc-tccgacctgcctatgcacttgggagaaggggatggagccgcgggaagttcgtgccatgtg
                     Rhesus  cagagactcttctgacttgcctgtgtacttgagagaagagggtggagccatgggaagttcgtgccatgtg
        Crab-eating macaque  cagagactcttctgacttgcctgtgtacttgagagaagagggtggagccatgggaagttcgtgccatgtg
                     Baboon  cagagactcttctgacttgcctgtgtacttgagagaagagggtggagccatgggaagttcgtgccatgtg
               Green monkey  cagagactcttctgacttgcctatgcacttgagagaagagggtggagccatgggaagttcgtggcatgtg
                   Marmoset  cggagaatc-tccgacctgcctgtgcacttgggagga---ggtggagccacggcaagttcacgtcctgtg
                      Shrew  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
        Cape elephant shrew  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
                 Chinchilla  ======================================================================
               Prairie vole  ======================================================================
                     Tenrec  ======================================================================
            Chinese hamster  ======================================================================
                      Mouse  ======================================================================
             Golden hamster  ======================================================================
                       Pika  ======================================================================
                        Rat  ======================================================================
            Star-nosed mole  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                   Squirrel  ======================================================================
         Chinese tree shrew  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
                   Bushbaby  ======================================================================
             Naked mole-rat  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                   Aardvark  ======================================================================
           Cape golden mole  ======================================================================
                        Pig  ======================================================================
           White rhinoceros  ======================================================================
            Squirrel monkey  ======================================================================
                      Horse  ======================================================================
                     Alpaca  ======================================================================

                      Human  cagttggggaggagcctggcctcttcagttcttgtgtgtagcctggaatcagtctgggggtgg-------
                      Chimp  cagttggggaggagcctggcctcttcagttcttgtgtgtagcctggaatcagtctgggggtgg-------
                    Gorilla  cagttggggaggagcctggcctcttcagttcttgtgtgtagcctggaatcagtctgggggtgg-------
                  Orangutan  cagttggggaggagcctggcctcttcagttcctgtgtgtggcctggaatcaatctgggggtgg-------
                     Gibbon  cagttggggaggaacctggcctcttcacttgttgtgtgtggcctggaatcaatctgggggtgg-------
                     Rhesus  cagttggggaggagcttggccttttcagttcctgtgtgtggcctggaatcaaactgggtacgt-gggggg
        Crab-eating macaque  cagttggggaggagcttggccttttcagttcctgtgtgtggcctgaaatcaaactgggtacgt--ggggg
                     Baboon  cagttggagaggagcttggccttttcagttcctgtctgtggcctggaaccaaactgggtacgt-gggggg
               Green monkey  cagttggggaggagcttggccttttcagttcctgtgggtggcctggaatcaaactggggacgtggagggg
                   Marmoset  cagtgggggaggagcctggcctcttcagtt-tggtgtatggcctggaatcaatctgtgggcgg-------
                      Shrew  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
        Cape elephant shrew  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
                 Chinchilla  ======================================================================
               Prairie vole  ======================================================================
                     Tenrec  ======================================================================
            Chinese hamster  ======================================================================
                      Mouse  ======================================================================
             Golden hamster  ======================================================================
                       Pika  ======================================================================
                        Rat  ======================================================================
            Star-nosed mole  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                   Squirrel  ======================================================================
         Chinese tree shrew  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
                   Bushbaby  ======================================================================
             Naked mole-rat  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                   Aardvark  ======================================================================
           Cape golden mole  ======================================================================
                        Pig  ======================================================================
           White rhinoceros  ======================================================================
            Squirrel monkey  ======================================================================
                      Horse  ======================================================================
                     Alpaca  ======================================================================

                      Human  ----gg-------------------------------gtgctgttggcaggaactcttcttgctttgctg
                      Chimp  ----gg-------------------------------gtgctgttggcaggaactcttcttgctttgctg
                    Gorilla  ----gg-------------------------------gtgctgttggcaggaactcttcttgctttgctg
                  Orangutan  ----gg-------------------------------gtgctgttggcaggaactcttcttgctttgctg
                     Gibbon  ----gg-------------------------------gtgctgttggcaggaactcttcttgctttgctg
                     Rhesus  gcgtgg-gaggacgtgggaggacatggcggagagggcgggctgctggccggaac---ccttgctttgctg
        Crab-eating macaque  acgtgg-gaggacgtgggaggacatggcggagggggcgggctgctggcaggaac---ccttgctttgctg
                     Baboon  acgtgg-gaggacgtgggaggacatggcggagggggcgggctgctggcaggaac---acttgctttgctg
               Green monkey  acgtggaggggacgtgggaggacatggtagggggagcgggctgctggcaggaac---ccttgctttgctg
                   Marmoset  ----gg----------------------------------ctgctggcaggaactcctcttg-tttgctg
                      Shrew  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
        Cape elephant shrew  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
                 Chinchilla  ======================================================================
               Prairie vole  ======================================================================
                     Tenrec  ======================================================================
            Chinese hamster  ======================================================================
                      Mouse  ======================================================================
             Golden hamster  ======================================================================
                       Pika  ======================================================================
                        Rat  ======================================================================
            Star-nosed mole  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                   Squirrel  ======================================================================
         Chinese tree shrew  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                    Manatee  ======================================================================
                   Elephant  ======================================================================
                   Bushbaby  ======================================================================
             Naked mole-rat  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                   Aardvark  ======================================================================
           Cape golden mole  ======================================================================
                        Pig  ======================================================================
           White rhinoceros  ======================================================================
            Squirrel monkey  ======================================================================
                      Horse  ======================================================================
                     Alpaca  ======================================================================

                      Human  agag-atttttttttcttcttt-tcctttttcaccc
                      Chimp  agag-tttttcttttcttcttt-tcctttttcaccc
                    Gorilla  agagtttttttttttcttcttt-tcctttttcaccc
                  Orangutan  agag--tttttttttcttcttt-tcctttttcaccc
                     Gibbon  agag--tttttttttcttcttt-tcctttttcaccc
                     Rhesus  agag--ttttttttt------t-tcttttttcactc
        Crab-eating macaque  agag--ttttttttt------tgtcttttttcactc
                     Baboon  agag--ttttttttt------t-tcttttttcactc
               Green monkey  agag--ttttttttt--------tcttttttcactc
                   Marmoset  agag-gtttttttttcttcttt-tcctttttcaccc
                      Shrew  ====================================
     Lesser Egyptian jerboa  ====================================
        Cape elephant shrew  ====================================
                   Hedgehog  ====================================
           Brush-tailed rat  ====================================
                 Chinchilla  ====================================
               Prairie vole  ====================================
                     Tenrec  ====================================
            Chinese hamster  ====================================
                      Mouse  ====================================
             Golden hamster  ====================================
                       Pika  ====================================
                        Rat  ====================================
            Star-nosed mole  ====================================
           Black flying-fox  ====================================
               Weddell seal  ====================================
               Killer whale  ====================================
                      Panda  ====================================
              Big brown bat  ====================================
                        Cow  ====================================
              Domestic goat  ====================================
                      Sheep  ====================================
           Tibetan antelope  ====================================
                   Squirrel  ====================================
         Chinese tree shrew  ====================================
                        Dog  ====================================
                    Ferret   ====================================
                        Cat  ====================================
             Pacific walrus  ====================================
                    Dolphin  ====================================
                    Manatee  ====================================
                   Elephant  ====================================
                   Bushbaby  ====================================
             Naked mole-rat  ====================================
                     Rabbit  ====================================
             Bactrian camel  ====================================
                    Megabat  ====================================
                   Aardvark  ====================================
           Cape golden mole  ====================================
                        Pig  ====================================
           White rhinoceros  ====================================
            Squirrel monkey  ====================================
                      Horse  ====================================
                     Alpaca  ====================================

Alignment block 9 of 341 in window, 30843564 - 30843608, 45 bps 
B D                   Human  aataaattctgttcccctcacccttcaatgcgtctgcgttcctag
B D                   Chimp  aataaattctgttcccctcacccttcaatgcgtctgcgttcctag
B D                 Gorilla  aataaattctgttcccctcacccttcaatgcgtctgcgttcctag
B D               Orangutan  aataaattctgttcccctcatctttcaatgtgtctgcgttcctag
B D                  Gibbon  aataaattctgttcccctcacccttcaatgtgtctgcgttcctag
B D                  Rhesus  aataaattctgttcccctcacccttccatgtgtctgcgttcctag
B D     Crab-eating macaque  aataaattctgttcccctcacccttccatgtgtctgcgttcctag
B D                  Baboon  aataaattctgttcccctcacccttccatgtgtctgcgttcctag
B D            Green monkey  actaaattctgttccccttacccttcgatgtgtctgcgttcctag
B D                Marmoset  aacaaattccgttcccctcacccttcagtgtgtctgcgatcctag
B D         Squirrel monkey  aataaattccgtttccctcacccttcagtgtgtctgtgatcctag
B D                   Shrew  =============================================
    Lesser Egyptian jerboa  =============================================
       Cape elephant shrew  =============================================
B D                Hedgehog  =============================================
          Brush-tailed rat  =============================================
                Chinchilla  =============================================
              Prairie vole  =============================================
B D                  Tenrec  =============================================
B D         Chinese hamster  =============================================
B D                   Mouse  =============================================
            Golden hamster  =============================================
B D                    Pika  =============================================
B D                     Rat  =============================================
           Star-nosed mole  =============================================
          Black flying-fox  =============================================
              Weddell seal  =============================================
              Killer whale  =============================================
B D                   Panda  =============================================
             Big brown bat  =============================================
B D                     Cow  =============================================
             Domestic goat  =============================================
B D                   Sheep  =============================================
          Tibetan antelope  =============================================
B D                Squirrel  =============================================
        Chinese tree shrew  =============================================
B D                     Dog  =============================================
B D                 Ferret   =============================================
B D                     Cat  =============================================
            Pacific walrus  =============================================
B D                 Dolphin  =============================================
B D                 Manatee  =============================================
B D                Elephant  =============================================
B D                Bushbaby  =============================================
B D          Naked mole-rat  =============================================
B D                  Rabbit  =============================================
            Bactrian camel  =============================================
B D                 Megabat  =============================================
                  Aardvark  =============================================
          Cape golden mole  =============================================
B D                     Pig  =============================================
B D        White rhinoceros  =============================================
B D                   Horse  =============================================
B D                  Alpaca  =============================================

Alignment block 10 of 341 in window, 30843609 - 30843634, 26 bps 
B D                   Human  cttttcctgcttgtgtgacaagaacc
B D                   Chimp  cttttcctgcttgtgtgacaagaacc
B D                 Gorilla  cttttcctgcttgtgtgacaagaacc
B D               Orangutan  cttttcctggttgtgtgacaagaacc
B D                  Gibbon  cttttcctggttgtgtgacaaggacc
B D                  Rhesus  cttttcttggtcgtatgacaagaacc
B D     Crab-eating macaque  cttttcttggtcgtatgacaagaacc
B D                  Baboon  cttttcttggtcgtatgacaagaacc
B D            Green monkey  cttttcttggtcgtatgacaagaacc
B D                Marmoset  attctcctggtcgtgtgacaagaacc
B D         Squirrel monkey  cttttcctggtagtgtgacaagaacc
B D                  Tenrec  ctcttcctactaatgt----------
B D                   Shrew  ==========================
    Lesser Egyptian jerboa  ==========================
       Cape elephant shrew  ==========================
B D                Hedgehog  ==========================
          Brush-tailed rat  ==========================
                Chinchilla  ==========================
              Prairie vole  ==========================
B D         Chinese hamster  ==========================
B D                   Mouse  ==========================
            Golden hamster  ==========================
B D                    Pika  ==========================
B D                     Rat  ==========================
           Star-nosed mole  ==========================
          Black flying-fox  ==========================
              Weddell seal  ==========================
              Killer whale  ==========================
B D                   Panda  ==========================
             Big brown bat  ==========================
B D                     Cow  ==========================
             Domestic goat  ==========================
B D                   Sheep  ==========================
          Tibetan antelope  ==========================
B D                Squirrel  ==========================
        Chinese tree shrew  ==========================
B D                     Dog  ==========================
B D                 Ferret   ==========================
B D                     Cat  ==========================
            Pacific walrus  ==========================
B D                 Dolphin  ==========================
B D                 Manatee  ==========================
B D                Elephant  ==========================
B D                Bushbaby  ==========================
B D          Naked mole-rat  ==========================
B D                  Rabbit  ==========================
            Bactrian camel  ==========================
B D                 Megabat  ==========================
                  Aardvark  ==========================
          Cape golden mole  ==========================
B D                     Pig  ==========================
B D        White rhinoceros  ==========================
B D                   Horse  ==========================
B D                  Alpaca  ==========================

Alignment block 11 of 341 in window, 30843635 - 30843651, 17 bps 
B D                   Human  tggttttag--ggtttaag
B D                   Chimp  tggttttag--ggtttaag
B D                 Gorilla  tggttttag--ggtttaag
B D               Orangutan  tggttttag--ggtttaag
B D                  Gibbon  tggttttag--ggtttaag
B D                  Rhesus  tggttttagctgaactaag
B D     Crab-eating macaque  tggttttagctgaactaag
B D                  Baboon  tggttttagctgaactaag
B D            Green monkey  tggttttagctgaactaag
B D                Marmoset  tggttttagctaaattaag
B D         Squirrel monkey  tggttttagctaaactaag
B D                Elephant  tgtttcaaa--tgtttaa-
B D                  Tenrec  ---tttaat--cgtttaaa
B D                   Shrew  ===================
    Lesser Egyptian jerboa  ===================
       Cape elephant shrew  ===================
B D                Hedgehog  ===================
          Brush-tailed rat  ===================
                Chinchilla  ===================
              Prairie vole  ===================
B D         Chinese hamster  ===================
B D                   Mouse  ===================
            Golden hamster  ===================
B D                    Pika  ===================
B D                     Rat  ===================
           Star-nosed mole  ===================
          Black flying-fox  ===================
              Weddell seal  ===================
              Killer whale  ===================
B D                   Panda  ===================
             Big brown bat  ===================
B D                     Cow  ===================
             Domestic goat  ===================
B D                   Sheep  ===================
          Tibetan antelope  ===================
B D                Squirrel  ===================
        Chinese tree shrew  ===================
B D                     Dog  ===================
B D                 Ferret   ===================
B D                     Cat  ===================
            Pacific walrus  ===================
B D                 Dolphin  ===================
B D                 Manatee  ===================
B D                Bushbaby  ===================
B D          Naked mole-rat  ===================
B D                  Rabbit  ===================
            Bactrian camel  ===================
B D                 Megabat  ===================
                  Aardvark  ===================
          Cape golden mole  ===================
B D                     Pig  ===================
B D        White rhinoceros  ===================
B D                   Horse  ===================
B D                  Alpaca  ===================

Alignment block 12 of 341 in window, 30843652 - 30843669, 18 bps 
B D                   Human  gaacaaagttctgcatca
B D                   Chimp  gaacaaagttctgcatca
B D                 Gorilla  gaacaaagttctgcatca
B D               Orangutan  gaacaaagttctgcatca
B D                  Gibbon  gaacaaagttctgcatca
B D                  Rhesus  gaacaaagttctgcatca
B D     Crab-eating macaque  gaacaaagttctgcatca
B D                  Baboon  gaacaaagttctgcatca
B D            Green monkey  gaacaaagttctgcatca
B D                Marmoset  gaacaaagttctgtatca
B D         Squirrel monkey  gaacaaagttctgtatca
B D                Elephant  -------------aataa
B D                 Manatee  gaataatgttttaaataa
B D                  Tenrec  --------------gtac
                   Aardvark  gaataatgttttaaataa
B D                   Shrew  ==================
    Lesser Egyptian jerboa  ==================
       Cape elephant shrew  ==================
B D                Hedgehog  ==================
          Brush-tailed rat  ==================
                Chinchilla  ==================
              Prairie vole  ==================
B D         Chinese hamster  ==================
B D                   Mouse  ==================
            Golden hamster  ==================
B D                    Pika  ==================
B D                     Rat  ==================
           Star-nosed mole  ==================
          Black flying-fox  ==================
              Weddell seal  ==================
              Killer whale  ==================
B D                   Panda  ==================
             Big brown bat  ==================
B D                     Cow  ==================
             Domestic goat  ==================
B D                   Sheep  ==================
          Tibetan antelope  ==================
B D                Squirrel  ==================
        Chinese tree shrew  ==================
B D                     Dog  ==================
B D                 Ferret   ==================
B D                     Cat  ==================
            Pacific walrus  ==================
B D                 Dolphin  ==================
B D                Bushbaby  ==================
B D          Naked mole-rat  ==================
B D                  Rabbit  ==================
            Bactrian camel  ==================
B D                 Megabat  ==================
          Cape golden mole  ==================
B D                     Pig  ==================
B D        White rhinoceros  ==================
B D                   Horse  ==================
B D                  Alpaca  ==================

Inserts between block 12 and 13 in window
B D               Elephant 5bp
B D                Manatee 5bp
B D                 Tenrec 5bp
                  Aardvark 5bp

Alignment block 13 of 341 in window, 30843670 - 30843670, 1 bps 
B D                   Human  a
B D                   Chimp  a
B D                 Gorilla  a
B D               Orangutan  a
B D                  Gibbon  a
B D                  Rhesus  g
B D     Crab-eating macaque  g
B D                  Baboon  g
B D            Green monkey  g
B D                Marmoset  a
B D         Squirrel monkey  a
B D        White rhinoceros  a
B D                Elephant  a
B D                 Manatee  a
B D                  Tenrec  a
                   Aardvark  a
B D                   Shrew  =
    Lesser Egyptian jerboa  =
       Cape elephant shrew  =
B D                Hedgehog  =
          Brush-tailed rat  =
                Chinchilla  =
              Prairie vole  =
B D         Chinese hamster  =
B D                   Mouse  =
            Golden hamster  =
B D                    Pika  =
B D                     Rat  =
           Star-nosed mole  =
          Black flying-fox  =
              Weddell seal  =
              Killer whale  =
B D                   Panda  =
             Big brown bat  =
B D                     Cow  =
             Domestic goat  =
B D                   Sheep  =
          Tibetan antelope  =
B D                Squirrel  =
        Chinese tree shrew  =
B D                     Dog  =
B D                 Ferret   =
B D                     Cat  =
            Pacific walrus  =
B D                 Dolphin  =
B D                Bushbaby  =
B D          Naked mole-rat  =
B D                  Rabbit  =
            Bactrian camel  =
B D                 Megabat  =
          Cape golden mole  =
B D                     Pig  =
B D                   Horse  =
B D                  Alpaca  =

Alignment block 14 of 341 in window, 30843671 - 30843679, 9 bps 
B D                   Human  taagattca
B D                   Chimp  taagattca
B D                 Gorilla  taagattca
B D               Orangutan  taagattca
B D                  Gibbon  taagattca
B D                  Rhesus  taggattca
B D     Crab-eating macaque  taggattca
B D                  Baboon  taggattca
B D            Green monkey  taggattca
B D                Marmoset  taagattca
B D         Squirrel monkey  taagattca
B D                   Horse  taggattaa
B D        White rhinoceros  taggattac
B D                Elephant  tagagttaa
B D                 Manatee  tagagttaa
B D                  Tenrec  tagaagtac
                   Aardvark  tagaggtaa
B D                   Shrew  =========
    Lesser Egyptian jerboa  =========
       Cape elephant shrew  =========
B D                Hedgehog  =========
          Brush-tailed rat  =========
                Chinchilla  =========
              Prairie vole  =========
B D         Chinese hamster  =========
B D                   Mouse  =========
            Golden hamster  =========
B D                    Pika  =========
B D                     Rat  =========
           Star-nosed mole  =========
          Black flying-fox  =========
              Weddell seal  =========
              Killer whale  =========
B D                   Panda  =========
             Big brown bat  =========
B D                     Cow  =========
             Domestic goat  =========
B D                   Sheep  =========
          Tibetan antelope  =========
B D                Squirrel  =========
        Chinese tree shrew  =========
B D                     Dog  =========
B D                 Ferret   =========
B D                     Cat  =========
            Pacific walrus  =========
B D                 Dolphin  =========
B D                Bushbaby  =========
B D          Naked mole-rat  =========
B D                  Rabbit  =========
            Bactrian camel  =========
B D                 Megabat  =========
          Cape golden mole  =========
B D                     Pig  =========
B D                  Alpaca  =========

Alignment block 15 of 341 in window, 30843680 - 30843689, 10 bps 
B D                   Human  aaagaaatc-a-
B D                   Chimp  aaagaaatc-a-
B D                 Gorilla  aaagaaatc-a-
B D               Orangutan  aaagaaatc-a-
B D                  Gibbon  aaagaaatc-a-
B D                  Rhesus  aaagaa----a-
B D     Crab-eating macaque  aaagaa----a-
B D                  Baboon  aaagaa----a-
B D            Green monkey  aaagaa----a-
B D                Marmoset  aaagacatc-a-
B D         Squirrel monkey  aaagacatc-a-
B D                Squirrel  aaaaaaatcaa-
B D                   Horse  aaggaaatc-a-
B D        White rhinoceros  caggaaatc-a-
B D                Elephant  aaggaaacc-aa
B D                 Manatee  aaggaaacc-aa
B D                  Tenrec  aaggaaatc-aa
                   Aardvark  aaagaaatc-aa
B D                   Shrew  ============
    Lesser Egyptian jerboa  ============
       Cape elephant shrew  ============
B D                Hedgehog  ============
          Brush-tailed rat  ============
                Chinchilla  ============
              Prairie vole  ============
B D         Chinese hamster  ============
B D                   Mouse  ============
            Golden hamster  ============
B D                    Pika  ============
B D                     Rat  ============
           Star-nosed mole  ============
          Black flying-fox  ============
              Weddell seal  ============
              Killer whale  ============
B D                   Panda  ============
             Big brown bat  ============
B D                     Cow  ============
             Domestic goat  ============
B D                   Sheep  ============
          Tibetan antelope  ============
        Chinese tree shrew  ============
B D                     Dog  ============
B D                 Ferret   ============
B D                     Cat  ============
            Pacific walrus  ============
B D                 Dolphin  ============
B D                Bushbaby  ============
B D          Naked mole-rat  ============
B D                  Rabbit  ============
            Bactrian camel  ============
B D                 Megabat  ============
          Cape golden mole  ============
B D                     Pig  ============
B D                  Alpaca  ============

Inserts between block 15 and 16 in window
B D                  Horse 1bp
B D       White rhinoceros 1bp

Alignment block 16 of 341 in window, 30843690 - 30843703, 14 bps 
B D                   Human  ttctattgaaatat
B D                   Chimp  ttctattgaaatac
B D                 Gorilla  ttctattgaaatat
B D               Orangutan  ttctattgaaatat
B D                  Gibbon  ttctattgaaatat
B D                  Rhesus  ttctgttgaaatat
B D     Crab-eating macaque  ttctgttgaaatat
B D                  Baboon  ttctgttgaaatat
B D            Green monkey  ttctgttgaa--at
B D                Marmoset  ttctattgaaaaat
B D         Squirrel monkey  ttctattgaaatat
B D                Squirrel  tcatattgaagcat
B D                   Horse  ttatatcaaaatgt
B D        White rhinoceros  ttatattgaaatgt
            Star-nosed mole  ttatactgaaatcc
B D                Elephant  ttacattgaaaaat
B D                 Manatee  ttatattgaactat
B D                  Tenrec  tcatactgaa-tat
                   Aardvark  ttatattgaaatat
B D                   Shrew  ==============
    Lesser Egyptian jerboa  ==============
       Cape elephant shrew  ==============
B D                Hedgehog  ==============
          Brush-tailed rat  ==============
                Chinchilla  ==============
              Prairie vole  ==============
B D         Chinese hamster  ==============
B D                   Mouse  ==============
            Golden hamster  ==============
B D                    Pika  ==============
B D                     Rat  ==============
          Black flying-fox  ==============
              Weddell seal  ==============
              Killer whale  ==============
B D                   Panda  ==============
             Big brown bat  ==============
B D                     Cow  ==============
             Domestic goat  ==============
B D                   Sheep  ==============
          Tibetan antelope  ==============
        Chinese tree shrew  ==============
B D                     Dog  ==============
B D                 Ferret   ==============
B D                     Cat  ==============
            Pacific walrus  ==============
B D                 Dolphin  ==============
B D                Bushbaby  ==============
B D          Naked mole-rat  ==============
B D                  Rabbit  ==============
            Bactrian camel  ==============
B D                 Megabat  ==============
          Cape golden mole  ==============
B D                     Pig  ==============
B D                  Alpaca  ==============

Alignment block 17 of 341 in window, 30843704 - 30843776, 73 bps 
B D                   Human  gattctaggcacagg--------------ctagtt--gggggtctctgagccccagatcccacagct---
B D                   Chimp  gattctaggcacagg--------------ctagtt--gggggtctctgaggcccagatcccacagct---
B D                 Gorilla  gattctaggcacagg--------------ctagtt--gggggtctctgagccccagatcccacagct---
B D               Orangutan  gattctaggcacagg--------------ctagtt--gggggtctctgagccccagatcccacagct---
B D                  Gibbon  ggttctaggcacagg--------------ctagtt--gggggtctctgagccccagatcccacagct---
B D                  Rhesus  gattttaggtgtaga--------------ctagtt--gggcatctctgagccccagatcccacagct---
B D     Crab-eating macaque  gattttaggtgtaga--------------ctagtt--ggacgtctctgagccccagatcccacagct---
B D                  Baboon  gattttaggtgtaga--------------ctagtt--ggacgtctctgagccccagatcccacagct---
B D            Green monkey  gattttaggtgtaga--------------ctagtt--gggtgtctctgagccccagatcccacagct---
B D                Marmoset  gattctaggcacaga--------------ccagtt---ggggtctctgagccccagatcccacagct---
B D         Squirrel monkey  aattctaggcacaga--------------ccagct--gggggtctctgagccccagatcccacagct---
B D                Bushbaby  gattataggcataagccaccacacctggcctagct--gaaggtctttgagtcccagatcacacatca---
B D                Squirrel  gatg------aggga--------------caaatt--tggagtctttgaaccccaaatcacacacccatg
B D                   Horse  gattctaagtatgga--------------ctacgtaggggggtctatgaaccccagatcacacatga---
B D        White rhinoceros  gattctaagcatgga--------------ctactt-ggggggtctttgaaccacagatcatacatca---
            Star-nosed mole  gactctgagcatgga--------------ctcctg-gtggggcctgtgaactccagatcagacactg---
B D                Elephant  aattctaagcatggg--------------ctacat--gggggtctgggagttccaggctgagaaccg---
B D                 Manatee  aattctaagcatggg--------------ctactt--gggggtctgagaatcccaggctgagaaccg---
B D                  Tenrec  cattctaagcatgag--------------atactg--gggggtctgggcagcccaggctgagaacta---
                   Aardvark  aattctaagtatggg--------------ttactt--gagggtctgggaaccccagactgagaactg---
B D                   Shrew  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
       Cape elephant shrew  ======================================================================
B D                Hedgehog  ======================================================================
          Brush-tailed rat  ======================================================================
                Chinchilla  ======================================================================
              Prairie vole  ======================================================================
B D         Chinese hamster  ======================================================================
B D                   Mouse  ======================================================================
            Golden hamster  ======================================================================
B D                    Pika  ======================================================================
B D                     Rat  ======================================================================
          Black flying-fox  ======================================================================
              Weddell seal  ======================================================================
              Killer whale  ======================================================================
B D                   Panda  ======================================================================
             Big brown bat  ======================================================================
B D                     Cow  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
        Chinese tree shrew  ======================================================================
B D                     Dog  ======================================================================
B D                 Ferret   ======================================================================
B D                     Cat  ======================================================================
            Pacific walrus  ======================================================================
B D                 Dolphin  ======================================================================
B D          Naked mole-rat  ======================================================================
B D                  Rabbit  ======================================================================
            Bactrian camel  ======================================================================
B D                 Megabat  ======================================================================
          Cape golden mole  ======================================================================
B D                     Pig  ======================================================================
B D                  Alpaca  ======================================================================

                      Human  -gtgctgagatgcct-gcccac-aa
                      Chimp  -gtgctgagatgcct-gcccac-aa
                    Gorilla  -gtgctgagatgcct-gcccac-aa
                  Orangutan  -gtgctgagatgcct-gcccac-ag
                     Gibbon  -gtgctgagat-cct-gcccac-aa
                     Rhesus  -ctgctgagatgcct-gtccaa-aa
        Crab-eating macaque  -ctgctgagatgcct-gtccaa-aa
                     Baboon  -ctgctgagatgccc-gtccaa-aa
               Green monkey  -ctgctgagatgtct-gtccaa-aa
                   Marmoset  -ctgctgagatgcct-gcccac-ag
            Squirrel monkey  -ctgctgagatgcct-gcccac-ag
                   Bushbaby  -ctgctgggctgtctcactcct-ag
                   Squirrel  gctgttaaggtgcctcatccactag
                      Horse  -ctgctaagggtctt-ctccgt-ag
           White rhinoceros  -ctgctaagggtctc-acccat-ag
            Star-nosed mole  -ctttaaggtgtctc-acccat-ag
                   Elephant  -ctggta--gtgtctcacccac-ca
                    Manatee  -ctgctagggtgtctcactcac-ta
                     Tenrec  -ctgtttgggtctttctcctct-ca
                   Aardvark  -ctgctagggtatcttgctcac-ta
                      Shrew  =========================
     Lesser Egyptian jerboa  =========================
        Cape elephant shrew  =========================
                   Hedgehog  =========================
           Brush-tailed rat  =========================
                 Chinchilla  =========================
               Prairie vole  =========================
            Chinese hamster  =========================
                      Mouse  =========================
             Golden hamster  =========================
                       Pika  =========================
                        Rat  =========================
           Black flying-fox  =========================
               Weddell seal  =========================
               Killer whale  =========================
                      Panda  =========================
              Big brown bat  =========================
                        Cow  =========================
              Domestic goat  =========================
                      Sheep  =========================
           Tibetan antelope  =========================
         Chinese tree shrew  =========================
                        Dog  =========================
                    Ferret   =========================
                        Cat  =========================
             Pacific walrus  =========================
                    Dolphin  =========================
             Naked mole-rat  =========================
                     Rabbit  =========================
             Bactrian camel  =========================
                    Megabat  =========================
           Cape golden mole  =========================
                        Pig  =========================
                     Alpaca  =========================

Inserts between block 17 and 18 in window
B D               Elephant 1bp
B D                Manatee 1bp
B D                 Tenrec 1bp
                  Aardvark 1bp

Alignment block 18 of 341 in window, 30843777 - 30843806, 30 bps 
B D                   Human  gctcaaggagcatgtctaggagtccacgga---
B D                   Chimp  gctcaaggagcatgtctaggagtccacgga---
B D                 Gorilla  gctcaaggagcatgtctaggagtccacgga---
B D               Orangutan  gctcaaggagcatgtctaggagtccacgga---
B D                  Gibbon  gctcaaggagcatgtctaggagtccatgga---
B D                  Rhesus  gctcagggagcatgtctaggtgtccagaga---
B D     Crab-eating macaque  gctcagggagcatgtctaggtgtccaggga---
B D                  Baboon  gctcagggagcatgtctaggtgtccaggga---
B D            Green monkey  gctcagggagcatgtctaggagtccacgga---
B D                Marmoset  gctcaggga-catgtctaggagtccacgga---
B D         Squirrel monkey  gctcagggagcatgtctaggagtccacgga---
B D                Bushbaby  gttcaaggggctcaccggggagtccatgga---
B D                Squirrel  gcttagggagctggtc-aggagtccatgga---
B D                   Horse  gctcagtgaacacgtctaggactccaggga---
B D        White rhinoceros  gcttagaggacatgtctaggactccagaga---
            Star-nosed mole  gcgcaatgaacatatctaggagcctctggc---
B D                Elephant  gctcagtgagcacatacaggagtccactgaggg
B D                 Manatee  gctcagtgagcatatcaaggaatccactg-gta
           Cape golden mole  gctcagtgaaaatgtcaaggaatctattaagaa
B D                  Tenrec  gctcagtgaacatggcga-gaatgcgtggaggt
                   Aardvark  gctcagtgagcagatcaaggaatccattgaggg
B D                   Shrew  =================================
    Lesser Egyptian jerboa  =================================
       Cape elephant shrew  =================================
B D                Hedgehog  =================================
          Brush-tailed rat  =================================
                Chinchilla  =================================
              Prairie vole  =================================
B D         Chinese hamster  =================================
B D                   Mouse  =================================
            Golden hamster  =================================
B D                    Pika  =================================
B D                     Rat  =================================
          Black flying-fox  =================================
              Weddell seal  =================================
              Killer whale  =================================
B D                   Panda  =================================
             Big brown bat  =================================
B D                     Cow  =================================
             Domestic goat  =================================
B D                   Sheep  =================================
          Tibetan antelope  =================================
        Chinese tree shrew  =================================
B D                     Dog  =================================
B D                 Ferret   =================================
B D                     Cat  =================================
            Pacific walrus  =================================
B D                 Dolphin  =================================
B D          Naked mole-rat  =================================
B D                  Rabbit  =================================
            Bactrian camel  =================================
B D                 Megabat  =================================
B D                     Pig  =================================
B D                  Alpaca  =================================

Inserts between block 18 and 19 in window
B D               Squirrel 3bp
B D                  Horse 3bp
B D       White rhinoceros 2bp
           Star-nosed mole 3bp

Alignment block 19 of 341 in window, 30843807 - 30843810, 4 bps 
B D                   Human  ggca
B D                   Chimp  ggca
B D                 Gorilla  ggca
B D               Orangutan  ggcg
B D                  Gibbon  gaca
B D                  Rhesus  ggca
B D     Crab-eating macaque  ggca
B D                  Baboon  ggca
B D            Green monkey  ggga
B D                Marmoset  ggta
B D         Squirrel monkey  ggta
B D                Bushbaby  ggtg
B D                Squirrel  ggca
B D                  Rabbit  ggca
B D                   Horse  gaca
B D        White rhinoceros  gaca
            Star-nosed mole  ggca
B D                Elephant  ggca
B D                 Manatee  ggca
           Cape golden mole  agcg
B D                  Tenrec  aaca
                   Aardvark  ggca
B D                   Shrew  ====
    Lesser Egyptian jerboa  ====
       Cape elephant shrew  ====
B D                Hedgehog  ====
          Brush-tailed rat  ====
                Chinchilla  ====
              Prairie vole  ====
B D         Chinese hamster  ====
B D                   Mouse  ====
            Golden hamster  ====
B D                    Pika  ====
B D                     Rat  ====
          Black flying-fox  ====
              Weddell seal  ====
              Killer whale  ====
B D                   Panda  ====
             Big brown bat  ====
B D                     Cow  ====
             Domestic goat  ====
B D                   Sheep  ====
          Tibetan antelope  ====
        Chinese tree shrew  ====
B D                     Dog  ====
B D                 Ferret   ====
B D                     Cat  ====
            Pacific walrus  ====
B D                 Dolphin  ====
B D          Naked mole-rat  ====
            Bactrian camel  ====
B D                 Megabat  ====
B D                     Pig  ====
B D                  Alpaca  ====

Inserts between block 19 and 20 in window
B D                  Horse 1bp
B D       White rhinoceros 1bp
           Star-nosed mole 1bp

Alignment block 20 of 341 in window, 30843811 - 30843814, 4 bps 
B D                   Human  ag-ca--
B D                   Chimp  ag-ca--
B D                 Gorilla  ag-ca--
B D               Orangutan  ag-ca--
B D                  Gibbon  ag-ca--
B D                  Rhesus  ag-tg--
B D     Crab-eating macaque  ag-tg--
B D                  Baboon  ag-tg--
B D            Green monkey  ag-tg--
B D                Marmoset  aagcg--
B D         Squirrel monkey  ac-tg--
B D                Bushbaby  aa-tg--
B D                Squirrel  ca-tg--
             Golden hamster  ag-ca--
B D                  Rabbit  ---ca--
B D                   Horse  ac-t---
B D        White rhinoceros  ac-t---
            Star-nosed mole  aa-c---
B D                Elephant  -a-catg
B D                 Manatee  -a-catg
           Cape golden mole  -a-tatg
B D                  Tenrec  -c-tata
                   Aardvark  -a-tatg
B D                   Shrew  =======
    Lesser Egyptian jerboa  =======
       Cape elephant shrew  =======
B D                Hedgehog  =======
          Brush-tailed rat  =======
                Chinchilla  =======
              Prairie vole  =======
B D         Chinese hamster  =======
B D                   Mouse  =======
B D                    Pika  =======
B D                     Rat  =======
          Black flying-fox  =======
              Weddell seal  =======
              Killer whale  =======
B D                   Panda  =======
             Big brown bat  =======
B D                     Cow  =======
             Domestic goat  =======
B D                   Sheep  =======
          Tibetan antelope  =======
        Chinese tree shrew  =======
B D                     Dog  =======
B D                 Ferret   =======
B D                     Cat  =======
            Pacific walrus  =======
B D                 Dolphin  =======
B D          Naked mole-rat  =======
            Bactrian camel  =======
B D                 Megabat  =======
B D                     Pig  =======
B D                  Alpaca  =======

Inserts between block 20 and 21 in window
B D                 Rabbit 2bp
B D                  Horse 1bp
B D       White rhinoceros 1bp

Alignment block 21 of 341 in window, 30843815 - 30843822, 8 bps 
B D                   Human  gaggcagg
B D                   Chimp  gaggcagg
B D                 Gorilla  gaggcagg
B D               Orangutan  gaggcagg
B D                  Gibbon  gaggcagg
B D                  Rhesus  gaggcagg
B D     Crab-eating macaque  gaggcagg
B D                  Baboon  gaggcagg
B D            Green monkey  gaggcagg
B D                Marmoset  gaggcagg
B D         Squirrel monkey  gaggcagg
B D                Bushbaby  gaggcagg
B D                Squirrel  gaggcagg
             Golden hamster  gggacagg
B D                  Rabbit  gaagcaag
B D                    Pika  gaaacaga
B D                   Horse  gaggcagg
B D        White rhinoceros  gaggcagg
            Star-nosed mole  -aggcagg
B D                Elephant  gaggcaaa
B D                 Manatee  gaggcaca
           Cape golden mole  gagttagg
B D                  Tenrec  gaggccgg
                   Aardvark  gaggtagg
B D                   Shrew  ========
    Lesser Egyptian jerboa  ========
       Cape elephant shrew  ========
B D                Hedgehog  ========
          Brush-tailed rat  ========
                Chinchilla  ========
              Prairie vole  ========
B D         Chinese hamster  ========
B D                   Mouse  ========
B D                     Rat  ========
          Black flying-fox  ========
              Weddell seal  ========
              Killer whale  ========
B D                   Panda  ========
             Big brown bat  ========
B D                     Cow  ========
             Domestic goat  ========
B D                   Sheep  ========
          Tibetan antelope  ========
        Chinese tree shrew  ========
B D                     Dog  ========
B D                 Ferret   ========
B D                     Cat  ========
            Pacific walrus  ========
B D                 Dolphin  ========
B D          Naked mole-rat  ========
            Bactrian camel  ========
B D                 Megabat  ========
B D                     Pig  ========
B D                  Alpaca  ========

Alignment block 22 of 341 in window, 30843823 - 30843854, 32 bps 
B D                   Human  aagaggagaccaga--attca-------gctgccggtggtg
B D                   Chimp  aagaggagaccaga--tttca-------gctgccggtggtg
B D                 Gorilla  aagaggagaccaga--tttca-------gctgccggtggtg
B D               Orangutan  aagaggagaccaga--tttcagccagaggctgccagtggtg
B D                  Gibbon  aagcggagaccaga--tttcagccagaggctgccaatggtg
B D                  Rhesus  aagaagagaccaaa--tttcagtcag--gctgccggtggta
B D     Crab-eating macaque  aagaagagaccaaa--tttcagtcag--gctgccggtggta
B D                  Baboon  aagaagagaccaaa--tttcagtcag--gctgccggtggta
B D            Green monkey  aagaagagaccaga--tttcagtcag--gctgccggtggta
B D                Marmoset  aagaggagaacaga--tttcagccagaggctgccggtggtg
B D         Squirrel monkey  aagaagagaccaga--tttcagccagaggccgccggtggtg
B D                Bushbaby  gaggggagac------------------tttg---------
B D                Squirrel  aagaggagacctca--------------gctctctaccagg
B D         Chinese hamster  aagagcag-cacag--------------gctctggacatcg
             Golden hamster  -----------------------------ctggggacactg
B D                  Rabbit  gagagcagacctcc--------------gttttgaac-tgg
B D                    Pika  aagaagacagctca--------------gctttgaac-cag
B D                   Horse  aggaggagagctcagctttcagccagaggcccatagtg---
B D        White rhinoceros  aagaggagacctcaactttcagccagaggcccactgtg---
            Star-nosed mole  aagaggagatctcagcttc--gcctaaggccaagggtg---
B D                Elephant  aagaggagctctcagctttaaaccagagacccacagcggta
B D                 Manatee  aagaag-gccctcagctttacaccagagacccacagtggtg
           Cape golden mole  aagaggagccctcagccttaaaccagagacccacattggtg
B D                  Tenrec  aaga--aggcccgagcctgaaaccagagacccccaggggtg
                   Aardvark  gagaggagccctcagctttaaaccagtgagccacag-----
B D                   Shrew  =========================================
    Lesser Egyptian jerboa  =========================================
       Cape elephant shrew  =========================================
B D                Hedgehog  =========================================
          Brush-tailed rat  =========================================
                Chinchilla  =========================================
              Prairie vole  =========================================
B D                   Mouse  =========================================
B D                     Rat  =========================================
          Black flying-fox  =========================================
              Weddell seal  =========================================
              Killer whale  =========================================
B D                   Panda  =========================================
             Big brown bat  =========================================
B D                     Cow  =========================================
             Domestic goat  =========================================
B D                   Sheep  =========================================
          Tibetan antelope  =========================================
        Chinese tree shrew  =========================================
B D                     Dog  =========================================
B D                 Ferret   =========================================
B D                     Cat  =========================================
            Pacific walrus  =========================================
B D                 Dolphin  =========================================
B D          Naked mole-rat  =========================================
            Bactrian camel  =========================================
B D                 Megabat  =========================================
B D                     Pig  =========================================
B D                  Alpaca  =========================================

Inserts between block 22 and 23 in window
B D               Squirrel 13bp
B D        Chinese hamster 13bp
            Golden hamster 17bp
B D                 Rabbit 12bp
B D                   Pika 14bp
B D                  Horse 4bp
B D       White rhinoceros 4bp
           Star-nosed mole 4bp
                  Aardvark 225bp

Alignment block 23 of 341 in window, 30843855 - 30843864, 10 bps 
B D                   Human  ag-cct----cagga
B D                   Chimp  ag-cct----cagga
B D                 Gorilla  ag-cct----cagga
B D               Orangutan  ag-cct----cagga
B D                  Gibbon  ag-cct----cagga
B D                  Rhesus  ag-cct----cagga
B D     Crab-eating macaque  ag-cct----cagga
B D                  Baboon  ag-cct----cagga
B D            Green monkey  ag-cct----cagga
B D                Marmoset  ag-cct----aaaga
B D         Squirrel monkey  ag-cct----aaaga
B D                Squirrel  ag-gttctgagaaca
B D         Chinese hamster  ag-ccccacaaaaga
             Golden hamster  ag-cctcacgaagga
B D          Naked mole-rat  ag-ccc----gagga
                 Chinchilla  ag-cct----gagca
B D                  Rabbit  ---gct----aagga
B D                    Pika  ggtgct----a---a
B D                   Horse  gc-ccc----aagga
B D        White rhinoceros  gt-cac----aagga
            Star-nosed mole  gg-cct----cagga
B D                Elephant  gg-tcc----taagg
B D                 Manatee  ga-tct----aaaga
           Cape golden mole  gg-tcc----taagg
B D                  Tenrec  gg-tcc----aaggg
B D                   Shrew  ===============
    Lesser Egyptian jerboa  ===============
       Cape elephant shrew  ===============
B D                Hedgehog  ===============
          Brush-tailed rat  ===============
              Prairie vole  ===============
B D                   Mouse  ===============
B D                     Rat  ===============
          Black flying-fox  ===============
              Weddell seal  ===============
              Killer whale  ===============
B D                   Panda  ===============
             Big brown bat  ===============
B D                     Cow  ===============
             Domestic goat  ===============
B D                   Sheep  ===============
          Tibetan antelope  ===============
        Chinese tree shrew  ===============
B D                     Dog  ===============
B D                 Ferret   ===============
B D                     Cat  ===============
            Pacific walrus  ===============
B D                 Dolphin  ===============
B D                Bushbaby  ---------------
            Bactrian camel  ===============
B D                 Megabat  ===============
                  Aardvark  ===============
B D                     Pig  ===============
B D                  Alpaca  ===============

Inserts between block 23 and 24 in window
B D               Elephant 1bp
          Cape golden mole 1bp
B D                 Tenrec 1bp

Alignment block 24 of 341 in window, 30843865 - 30843875, 11 bps 
B D                   Human  aa---ctc-tt----tatc
B D                   Chimp  aa---ctc-tt----tatc
B D                 Gorilla  aa---ctc-tt----tatc
B D               Orangutan  aa---ctc-tt----tatc
B D                  Gibbon  aa---ctc-tt----tatc
B D                  Rhesus  aa---ctcttt----tatc
B D     Crab-eating macaque  aa---ctcttt----tatc
B D                  Baboon  aa---ctcttt----tatc
B D            Green monkey  aa---gtcttt----tatc
B D                Marmoset  aa---ctc-tt----tatc
B D         Squirrel monkey  aa---ctc-tt----tatc
B D                Bushbaby  -a---ctt-tc----taac
B D                Squirrel  tt---ttc-tt--------
B D         Chinese hamster  ct---tgt-tt--------
             Golden hamster  ct---tgt-tt--------
B D          Naked mole-rat  catttttt-tt--------
                 Chinchilla  ca---atc-tt--------
B D                  Rabbit  ca---ccc-tttatc----
B D                    Pika  ca---ccc-tttagc----
B D                   Horse  aa---ctc-tc----tatc
B D        White rhinoceros  aa-----c-tc----tatc
            Star-nosed mole  a---------c----tatc
B D                Elephant  ca---ctc-tc----tatc
B D                 Manatee  ----------c----tatc
           Cape golden mole  ga---ctc-tt----gatc
B D                  Tenrec  ct---ctc-tt----gatc
                   Aardvark  ag---ctc-ct----tatc
B D                   Shrew  ===================
    Lesser Egyptian jerboa  ===================
       Cape elephant shrew  ===================
B D                Hedgehog  ===================
          Brush-tailed rat  ===================
              Prairie vole  ===================
B D                   Mouse  ===================
B D                     Rat  ===================
          Black flying-fox  ===================
              Weddell seal  ===================
              Killer whale  ===================
B D                   Panda  ===================
             Big brown bat  ===================
B D                     Cow  ===================
             Domestic goat  ===================
B D                   Sheep  ===================
          Tibetan antelope  ===================
        Chinese tree shrew  ===================
B D                     Dog  ===================
B D                 Ferret   ===================
B D                     Cat  ===================
            Pacific walrus  ===================
B D                 Dolphin  ===================
            Bactrian camel  ===================
B D                 Megabat  ===================
B D                     Pig  ===================
B D                  Alpaca  ===================

Inserts between block 24 and 25 in window
B D               Squirrel 230bp
B D        Chinese hamster 5bp
            Golden hamster 5bp
B D         Naked mole-rat 3bp
                Chinchilla 3bp
B D                  Horse 1bp
B D       White rhinoceros 1bp
           Star-nosed mole 1bp

Alignment block 25 of 341 in window, 30843876 - 30843879, 4 bps 
B D                   Human  aaag
B D                   Chimp  aaag
B D                 Gorilla  aaag
B D               Orangutan  aaag
B D                  Gibbon  aaag
B D                  Rhesus  aaaa
B D     Crab-eating macaque  aaaa
B D                  Baboon  aaaa
B D            Green monkey  aaaa
B D                Marmoset  aaag
B D         Squirrel monkey  gaag
B D                Bushbaby  aaag
B D         Chinese hamster  gaca
             Golden hamster  gaca
B D          Naked mole-rat  aaaa
                 Chinchilla  aaaa
B D                  Rabbit  aata
B D                    Pika  aaaa
B D                   Horse  aaa-
B D        White rhinoceros  aaa-
            Star-nosed mole  aaa-
B D                Elephant  aaaa
B D                 Manatee  aaaa
           Cape golden mole  aaat
B D                  Tenrec  agac
                   Aardvark  aaaa
B D                   Shrew  ====
    Lesser Egyptian jerboa  ====
       Cape elephant shrew  ====
B D                Hedgehog  ====
          Brush-tailed rat  ====
              Prairie vole  ====
B D                   Mouse  ====
B D                     Rat  ====
          Black flying-fox  ====
              Weddell seal  ====
              Killer whale  ====
B D                   Panda  ====
             Big brown bat  ====
B D                     Cow  ====
             Domestic goat  ====
B D                   Sheep  ====
          Tibetan antelope  ====
B D                Squirrel  ====
        Chinese tree shrew  ====
B D                     Dog  ====
B D                 Ferret   ====
B D                     Cat  ====
            Pacific walrus  ====
B D                 Dolphin  ====
            Bactrian camel  ====
B D                 Megabat  ====
B D                     Pig  ====
B D                  Alpaca  ====

Alignment block 26 of 341 in window, 30843880 - 30843894, 15 bps 
B D                   Human  cctagaaaagccaaa
B D                   Chimp  cctagaaaagccaaa
B D                 Gorilla  cctagaaaagccaaa
B D               Orangutan  cctagaaaagccaaa
B D                  Gibbon  cctagaaaagccaaa
B D                  Rhesus  cctggaaaagccaaa
B D     Crab-eating macaque  cctggaaaagccaaa
B D                  Baboon  cctggaaaagccaaa
B D            Green monkey  cctggaaaagccaaa
B D                Marmoset  cttagaaaagccaaa
B D         Squirrel monkey  cctagaaaagccaaa
B D                Bushbaby  ccaggtaaagccaaa
         Chinese tree shrew  cctggtaaagcccag
B D         Chinese hamster  cctagtagggccagt
             Golden hamster  cctagtaaggccagt
B D          Naked mole-rat  cctagtaaagccaaa
                 Chinchilla  ccta-taaagccaaa
B D                  Rabbit  cctggtaacgccaga
B D                    Pika  cctaggtgagccaga
B D                   Horse  cttagtaaagccaaa
B D        White rhinoceros  cctagcaaaaccaaa
            Star-nosed mole  cctcataaagccaaa
B D                Elephant  cctaataaggccaaa
B D                 Manatee  tctagtaaggccaaa
           Cape golden mole  cctagtaaggtcaaa
B D                  Tenrec  cctaataaggctaaa
                   Aardvark  cctagtaaagctaaa
B D                   Shrew  ===============
    Lesser Egyptian jerboa  ===============
       Cape elephant shrew  ===============
B D                Hedgehog  ===============
          Brush-tailed rat  ===============
              Prairie vole  ===============
B D                   Mouse  ===============
B D                     Rat  ===============
          Black flying-fox  ===============
              Weddell seal  ===============
              Killer whale  ===============
B D                   Panda  ===============
             Big brown bat  ===============
B D                     Cow  ===============
             Domestic goat  ===============
B D                   Sheep  ===============
          Tibetan antelope  ===============
B D                Squirrel  ===============
B D                     Dog  ===============
B D                 Ferret   ===============
B D                     Cat  ===============
            Pacific walrus  ===============
B D                 Dolphin  ===============
            Bactrian camel  ===============
B D                 Megabat  ===============
B D                     Pig  ===============
B D                  Alpaca  ===============

Alignment block 27 of 341 in window, 30843895 - 30843895, 1 bps 
B D                   Human  g
B D                   Chimp  g
B D                 Gorilla  g
B D               Orangutan  g
B D                  Gibbon  g
B D                  Rhesus  g
B D     Crab-eating macaque  g
B D                  Baboon  g
B D            Green monkey  g
B D                Bushbaby  g
         Chinese tree shrew  g
B D         Chinese hamster  g
             Golden hamster  g
B D                   Mouse  g
B D          Naked mole-rat  a
                 Chinchilla  a
B D                  Rabbit  g
B D                    Pika  g
B D                   Horse  g
B D        White rhinoceros  g
            Star-nosed mole  g
B D                Elephant  g
B D                 Manatee  g
           Cape golden mole  g
B D                  Tenrec  g
                   Aardvark  g
B D                   Shrew  =
    Lesser Egyptian jerboa  =
       Cape elephant shrew  =
B D                Hedgehog  =
          Brush-tailed rat  =
              Prairie vole  =
B D                     Rat  =
          Black flying-fox  =
              Weddell seal  =
              Killer whale  =
B D                   Panda  =
             Big brown bat  =
B D                     Cow  =
             Domestic goat  =
B D                   Sheep  =
          Tibetan antelope  =
B D                Squirrel  =
B D                     Dog  =
B D                 Ferret   =
B D                     Cat  =
            Pacific walrus  =
B D                 Dolphin  =
            Bactrian camel  =
B D                 Megabat  =
B D                     Pig  =
B D         Squirrel monkey  -
B D                  Alpaca  =
B D                Marmoset  -

Alignment block 28 of 341 in window, 30843896 - 30843898, 3 bps 
B D                   Human  gtg
B D                   Chimp  gtg
B D                 Gorilla  gtg
B D               Orangutan  gtg
B D                  Gibbon  gtg
B D                  Rhesus  gtg
B D     Crab-eating macaque  gtg
B D                  Baboon  gtg
B D            Green monkey  gtg
B D                Marmoset  gtg
B D         Squirrel monkey  gtg
B D                Bushbaby  gca
         Chinese tree shrew  gca
B D         Chinese hamster  -tg
             Golden hamster  -tg
B D                   Mouse  gtg
B D                     Rat  gtg
B D          Naked mole-rat  gtg
                 Chinchilla  gtg
B D                  Rabbit  gca
B D                    Pika  gga
B D                   Horse  gca
B D        White rhinoceros  gcg
            Star-nosed mole  gtg
B D                Elephant  gag
B D                 Manatee  gtg
           Cape golden mole  gtg
B D                  Tenrec  gtg
                   Aardvark  gtg
B D                   Shrew  ===
    Lesser Egyptian jerboa  ===
       Cape elephant shrew  ===
B D                Hedgehog  ===
          Brush-tailed rat  ===
              Prairie vole  ===
          Black flying-fox  ===
              Weddell seal  ===
              Killer whale  ===
B D                   Panda  ===
             Big brown bat  ===
B D                     Cow  ===
             Domestic goat  ===
B D                   Sheep  ===
          Tibetan antelope  ===
B D                Squirrel  ===
B D                     Dog  ===
B D                 Ferret   ===
B D                     Cat  ===
            Pacific walrus  ===
B D                 Dolphin  ===
            Bactrian camel  ===
B D                 Megabat  ===
B D                     Pig  ===
B D                  Alpaca  ===

Inserts between block 28 and 29 in window
B D               Elephant 1bp
B D                Manatee 1bp
          Cape golden mole 1bp
B D                 Tenrec 1bp
                  Aardvark 1bp

Alignment block 29 of 341 in window, 30843899 - 30843969, 71 bps 
B D                   Human  ggcccgag----------a------gg------gaaga-------aagagacaaagag---atggg----
B D                   Chimp  ggcccgag----------a------gg------gaaga-------aagagacaaagag---atggg----
B D                 Gorilla  ggcccgag----------a------gg------gaaga-------aagagacaaagag---atggg----
B D               Orangutan  ggcccgag----------a------gg------gaaga-------aagagacaaagag---atggg----
B D                  Gibbon  ggtccgag----------a------gg------gaaga-------aagagacaaagag---ttggg----
B D                  Rhesus  ggcccgag----------a------gg------gaaga-------aagagac--agag---atggg----
B D     Crab-eating macaque  ggcccgag----------a------gg------gaaga-------aagagac--agag---atggg----
B D                  Baboon  ggcccgag----------a------gg------gaaga-------gagagacaaagag---atggg----
B D            Green monkey  ggcccgag----------a------gg------gaaga-------aagagacaaagag---atggg----
B D                Marmoset  ggcccgag----------a------gg------gaaga-------aagagtcaaagag---atggg----
B D         Squirrel monkey  ggcctgag----------c------gg------gaaga-------aagagacaaagag---atggg----
B D                Bushbaby  gacccaag----------a------gg-----tgagga-------cagagacaaagag---ataga----
         Chinese tree shrew  gatgcaaa----------agcagacgg------aaaga-------aagggacaaggac---gaggg----
B D         Chinese hamster  gatcct------------g------ag------ggaag-------gaaagggtgaagagctaagaa----
             Golden hamster  gatccc------------g------ag------ggagg-------gagagggtgaaga---aagaa----
B D                   Mouse  ggtc--------------g------ca------gagag-------gaaaaaaagaaag---gtgtg----
B D                     Rat  gatccat-----------g------ag------ggaag-------gaaaaaaaaaaag---aagag----
B D          Naked mole-rat  ggcccacgagccagcg--a------ag------gaaga-------gaccagatgggag---agatg----
                 Chinchilla  gatgcaagagcaaagagca------aa------gaggg-------gacaaggtgggaa---gaagg----
B D                  Rabbit  gagccaagagg-------g------aa------gaaag-------aggagatggggga---gaaga----
B D                    Pika  gactcaagagg-------g------aa------gaaagcagtaaagggaggcagggaa---ggtag----
B D                   Horse  gacccagaa---------a------gg------gaaag-------aagagacaaagag---atggga---
B D        White rhinoceros  gacccagag---------a------gg------gaaag-------aagagacagagag---atagga---
            Star-nosed mole  gaaccaggg---------a------gg------ggaag-------aagagacagag------tggga---
B D                Elephant  gcccagag----------a------ga------gaagg-------aagagacaaacgg---atggga---
        Cape elephant shrew  ggacagaa----------a------ga------gaaga-------aagagacaaaaag---atggga---
B D                 Manatee  acccagag----------a------ga------gaagg-------aagagacaaagag---atggga---
           Cape golden mole  acccagaa----------a------aa------aaagg-------aagaaacagagat---gggaga---
B D                  Tenrec  atttagag----------a------gaaggcttaaagg-------tgaagagagagac---aggagacca
                   Aardvark  acctagac----------a------ga------------------aagagacaaagag---atggga---
B D                   Shrew  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
B D                Hedgehog  ======================================================================
          Brush-tailed rat  ======================================================================
              Prairie vole  ======================================================================
          Black flying-fox  ======================================================================
              Weddell seal  ======================================================================
              Killer whale  ======================================================================
B D                   Panda  ======================================================================
             Big brown bat  ======================================================================
B D                     Cow  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
B D                Squirrel  ======================================================================
B D                     Dog  ======================================================================
B D                 Ferret   ======================================================================
B D                     Cat  ======================================================================
            Pacific walrus  ======================================================================
B D                 Dolphin  ======================================================================
            Bactrian camel  ======================================================================
B D                 Megabat  ======================================================================
B D                     Pig  ======================================================================
B D                  Alpaca  ======================================================================

                      Human  -----------aagaag----atggaag-taggacactt-agagtggg-aaggaa--
                      Chimp  -----------aagaag----atggaag-taggacactt-agagtggg-aaggaa--
                    Gorilla  -----------aagaag----atggaag-taggacacttaagagtggg-aaggaa--
                  Orangutan  -----------aagaag----atggaag-taggacactt-agagtggg-aagaaa--
                     Gibbon  -----------aagaag----ctggaaa-taggacactt-agagtggg-aagaaa--
                     Rhesus  -----------aagaag----atggaag-taggacac---agattggg-aagaaa--
        Crab-eating macaque  -----------aagaag----atggaag-taggacac---agattggg-aagaaa--
                     Baboon  -----------aagaag----atggaag-taggacac---agattggg-aagaaa--
               Green monkey  -----------gagaag----atggaag-taggacac---ggattggg-aagaaa--
                   Marmoset  -----------aagaag----atggcag-taggacactt-ggagtggg-aggaaa--
            Squirrel monkey  -----------aagaag----atggcag-tgggacactt-ggagtggg-aggaaa--
                   Bushbaby  -----------aaga-------tggaag-tggggcgatt-ggggtggg-agagag--
         Chinese tree shrew  -----------aaga-------cagaag-tggggcgtct-gcaggggg-aggac---
            Chinese hamster  -----------agaaat----gtgcaga-tgag------------------------
             Golden hamster  -----------agaaat----gtgacga-t---------------------------
                      Mouse  -----------agagacggtggtgtcga-ggag------------------------
                        Rat  -----------ataaagaat-gtgacgg-tgaa------------------------
             Naked mole-rat  ------------gaagt----gaggcagctgga------------------------
                 Chinchilla  -----------cggagg----gaggcgg-tgga------------------------
                     Rabbit  -----------tggaag----gggccgc-tgga------------------------
                       Pika  -----------aggcag----gggcggc-tgga------------------------
                      Horse  -----------aagaag----atggaag-tgaggcaatt-ggaggggg---------
           White rhinoceros  -----------aagaag----atggaag-tggggcgatt-ggagtg-----------
            Star-nosed mole  -----------aggaag----gtggaag-gggg---att-gtggtaggc--------
                   Elephant  -----------aagaag----atggaag-taggacaatt-ggagtgag-agaaggag
        Cape elephant shrew  -----------aagagg----atggaag-tgggacaact-agagtgag-agaaagag
                    Manatee  -----------aagaag----atgaaag-tgggacaatt-ggagtgag-agaaagag
           Cape golden mole  -----------aagaag----acgaaag-tgggacaatt--ggagtag-agaaagag
                     Tenrec  aagagatgagcgaagag----gtggaag-tgatacaatc--gagtgag-agaaagag
                   Aardvark  -----------aacaag----atagaag-tgagacaatt-ggaatggg-agaaagag
                      Shrew  =========================================================
     Lesser Egyptian jerboa  =========================================================
                   Hedgehog  =========================================================
           Brush-tailed rat  =========================================================
               Prairie vole  =========================================================
           Black flying-fox  =========================================================
               Weddell seal  =========================================================
               Killer whale  =========================================================
                      Panda  =========================================================
              Big brown bat  =========================================================
                        Cow  =========================================================
              Domestic goat  =========================================================
                      Sheep  =========================================================
           Tibetan antelope  =========================================================
                   Squirrel  =========================================================
                        Dog  =========================================================
                    Ferret   =========================================================
                        Cat  =========================================================
             Pacific walrus  =========================================================
                    Dolphin  =========================================================
             Bactrian camel  =========================================================
                    Megabat  =========================================================
                        Pig  =========================================================
                     Alpaca  =========================================================

Inserts between block 29 and 30 in window
B D         Naked mole-rat 13bp
                Chinchilla 13bp
B D                 Rabbit 10bp
B D                   Pika 11bp

Alignment block 30 of 341 in window, 30843970 - 30843971, 2 bps 
B D                   Human  aa
B D                   Chimp  aa
B D                 Gorilla  aa
B D               Orangutan  aa
B D                  Gibbon  aa
B D                  Rhesus  aa
B D     Crab-eating macaque  aa
B D                  Baboon  aa
B D            Green monkey  aa
B D                Marmoset  aa
B D         Squirrel monkey  aa
B D                Bushbaby  ga
B D         Chinese hamster  ac
B D                   Mouse  gg
B D                     Rat  ac
B D          Naked mole-rat  ga
                 Chinchilla  ac
B D                Elephant  gc
        Cape elephant shrew  gt
B D                 Manatee  ac
           Cape golden mole  ac
B D                  Tenrec  ac
                   Aardvark  ac
B D                   Shrew  ==
    Lesser Egyptian jerboa  ==
B D                Hedgehog  ==
          Brush-tailed rat  ==
              Prairie vole  ==
            Golden hamster  --
B D                    Pika  ==
           Star-nosed mole  --
          Black flying-fox  ==
              Weddell seal  ==
              Killer whale  ==
B D                   Panda  ==
             Big brown bat  ==
B D                     Cow  ==
             Domestic goat  ==
B D                   Sheep  ==
          Tibetan antelope  ==
B D                Squirrel  ==
        Chinese tree shrew  --
B D                     Dog  ==
B D                 Ferret   ==
B D                     Cat  ==
            Pacific walrus  ==
B D                 Dolphin  ==
B D                  Rabbit  ==
            Bactrian camel  ==
B D                 Megabat  ==
B D                     Pig  ==
B D        White rhinoceros  --
B D                   Horse  --
B D                  Alpaca  ==

Alignment block 31 of 341 in window, 30843972 - 30843987, 16 bps 
B D                   Human  agagcaagagaaag--t--g
B D                   Chimp  agagcaagagaaag--t--g
B D                 Gorilla  agagcaagagaaag--t--g
B D               Orangutan  agagcaagagaaag--tg-g
B D                  Gibbon  agagcaagagaaag--tg-g
B D                  Rhesus  agagcaagagaaag--tg-g
B D     Crab-eating macaque  agagcaagagaaag--tg-g
B D            Green monkey  --agcaagagaaag--tg-g
B D                Marmoset  agagccagagcaag--tg-t
B D         Squirrel monkey  agagccagagcaag--tg-g
B D                Bushbaby  ------aaacaaag--ca-g
         Chinese tree shrew  agagccagtgagag--agag
     Lesser Egyptian jerboa  -----------------a--
B D         Chinese hamster  agaacgggagaaag--ag--
             Golden hamster  -------gagacag--a---
B D                   Mouse  ggag---gaggagg--gg--
B D                     Rat  agag---gaaaaaa--aa--
B D          Naked mole-rat  aagccgagggcaga--gg--
                 Chinchilla  acagcgagggcaag--ag--
B D                  Rabbit  ----cgagagagag--ag--
B D                    Pika  ----cagaaaggga--gg--
B D                   Horse  --aggaagagaaag--ca-g
B D        White rhinoceros  ---agaagagaaag--ca-g
            Star-nosed mole  --aaaaggagacgg--ta-g
B D                Elephant  aaaataagaaaaat--ga-g
        Cape elephant shrew  caaacaag-----t--ac-g
B D                 Manatee  aaaataagagaaat--aa-g
           Cape golden mole  aaaatcagataaat--aa-g
B D                  Tenrec  aatgcaagagacattaag-a
                   Aardvark  aaaataagagaaca--aa-g
B D                   Shrew  ====================
B D                Hedgehog  ====================
          Brush-tailed rat  ====================
              Prairie vole  ====================
          Black flying-fox  ====================
              Weddell seal  ====================
              Killer whale  ====================
B D                   Panda  ====================
             Big brown bat  ====================
B D                     Cow  ====================
             Domestic goat  ====================
B D                   Sheep  ====================
          Tibetan antelope  ====================
B D                Squirrel  ====================
B D                     Dog  ====================
B D                 Ferret   ====================
B D                     Cat  ====================
            Pacific walrus  ====================
B D                 Dolphin  ====================
            Bactrian camel  ====================
B D                 Megabat  ====================
B D                  Baboon  NNNNNNNNNNNNNNNNNNNN
B D                     Pig  ====================
B D                  Alpaca  ====================

Inserts between block 31 and 32 in window
    Lesser Egyptian jerboa 11bp
B D        Chinese hamster 11bp
            Golden hamster 5bp
B D                  Mouse 13bp
B D                    Rat 11bp
                Chinchilla 3bp
B D                 Rabbit 4bp
B D                   Pika 4bp

Alignment block 32 of 341 in window, 30843988 - 30844014, 27 bps 
B D                   Human  a----------gaggga---------gcagcagagccct----------gggaagg----
B D                   Chimp  a----------gaggga---------gcagcagagccct----------gggaagg----
B D                 Gorilla  a----------gaggga---------gcagcagagccct----------gggaagg----
B D               Orangutan  a----------gaggga---------gcagcagagccct----------gggaagg----
B D                  Gibbon  a----------gaggga---------gcagcagcgctct----------gggaagg----
B D                  Rhesus  a----------gaggga---------gcagcagtgctct----------gggaaga----
B D     Crab-eating macaque  a----------gaggga---------gcagcagtgctct----------gggaaga----
B D            Green monkey  a----------gaggga---------gcagcagtgctct----------gggaaga----
B D                Marmoset  a----------gaggta---------gcagcagtgctct----------gggaagg----
B D         Squirrel monkey  c----------gaggga---------gcggcagtgctct-----------ggaagg----
B D                Bushbaby  a----------gaggga---------gggggag-gctct----------gagaagg----
         Chinese tree shrew  c----------agagga---------ggaggagtgctta----------gggaaga----
B D                Squirrel  a----------gaggga---------ggaggaatatttt----------gagaaga----
     Lesser Egyptian jerboa  acagcaa----gggtaa---------ggaggagtgctta----------gagaaca----
B D         Chinese hamster  accgcaga---gggcaa---------gaggaaggtggtg---------------------
             Golden hamster  accgccgc---ggg----------------------------------------------
B D                   Mouse  a----------gggaaa-------------------------------------------
B D                     Rat  actgcgggggcgggagc---------gggggcgggggtgatgcagtgaggggaaaa----
B D          Naked mole-rat  ------------agagg---------gcgggaggaagcc---------------------
                 Chinchilla  ------------aggga---------ggaggagaaagtc--------------ccg----
B D                  Rabbit  ----------aggaggagcccgcgtggcggtggggcctc----------tgggagg----
B D                    Pika  ----------agatgga---------gaagtaagagcca----------aggaggg----
B D                   Horse  ----------agaggga---------ggaggagtgcttt----------gagaaga----
B D        White rhinoceros  ----------agaggga---------ggaggagtgcttt----------gagaaca----
            Star-nosed mole  ----------agaggag---------gaggggg---------------------------
B D                Elephant  ----------aaagaga---------ggaagagtactgt----------gagaagcaaga
        Cape elephant shrew  ----------agaggaa---------acgggagtggttt----------ga-aaggaaaa
B D                 Manatee  ----------aaaggaa---------ggaagagtgctta----------gagaagaaaaa
           Cape golden mole  ----------agaggga---------agataagtgcttt----------ga-aag---aa
B D                  Tenrec  ----------ggaagga---------gaagaagtgattt----------ga-aagcgaaa
                   Aardvark  ----------agaggga---------agaagaatgcttt----------gagaagaaaaa
B D                   Shrew  ============================================================
B D                Hedgehog  ============================================================
          Brush-tailed rat  ============================================================
              Prairie vole  ============================================================
          Black flying-fox  ============================================================
              Weddell seal  ============================================================
              Killer whale  ============================================================
B D                   Panda  ============================================================
             Big brown bat  ============================================================
B D                     Cow  ============================================================
             Domestic goat  ============================================================
B D                   Sheep  ============================================================
          Tibetan antelope  ============================================================
B D                     Dog  ============================================================
B D                 Ferret   ============================================================
B D                     Cat  ============================================================
            Pacific walrus  ============================================================
B D                 Dolphin  ============================================================
            Bactrian camel  ============================================================
B D                 Megabat  ============================================================
B D                  Baboon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Pig  ============================================================
B D                  Alpaca  ============================================================

Inserts between block 32 and 33 in window
B D               Squirrel 3bp
    Lesser Egyptian jerboa 3bp
B D                  Mouse 1bp
B D                    Rat 3bp
B D         Naked mole-rat 1bp
                Chinchilla 3bp
B D                 Rabbit 1110bp
B D                   Pika 11bp
B D                  Horse 4bp
B D       White rhinoceros 4bp

Alignment block 33 of 341 in window, 30844015 - 30844038, 24 bps 
B D                   Human  gagc----ttgaa-g--------g---------ggtg---------------gg-gcac---gtt--
B D                   Chimp  gagc----ttgaa-g--------g---------ggtg---------------gg-gcac---gtt--
B D                 Gorilla  gagc----ttgaa-g--------g---------ggtg---------------gg-gcat---gtt--
B D               Orangutan  gagca---ttgaa-g--------g---------ggtg---------------gg-gcac---gtt--
B D                  Gibbon  gagcg---ttgaa-g--------g---------ggtg---------------gg-gcac---gtt--
B D                  Rhesus  aagcg---ttgaa-g--------g---------ggtg---------------gg-gcac---atc--
B D     Crab-eating macaque  aagcg---ttgaa-g--------g---------ggtg---------------gg-gcac---atc--
B D            Green monkey  aagcg---ttgaa-g--------g---------ggtg---------------gg-gcac---atc--
B D                Marmoset  aagag---ttgaagg--------g---------ggtg---------------gg-gcgc---gtc--
B D         Squirrel monkey  aagag---ttgaa-g--------g---------ggtg---------------gg-gcgc---gtc--
B D                Bushbaby  aaggg---aggag-gacaaggtag---------tgtg---------------ag-ccag---tcc--
         Chinese tree shrew  aaaggcgcctgtg-g--------g---------tgtgtgggcggcggaaagtgg-gcag---ttg--
B D                Squirrel  -aact---gcagg-a--------g---------agta---------------g--------------
     Lesser Egyptian jerboa  -gatg---gaagg-g--------g---------cttg---------------gg-gcac--------
B D         Chinese hamster  --------aggaa-a--------g---------actg---------------ag-ggac--------
             Golden hamster  ----------------------------------gtg---------------ag-ggat--------
B D                   Mouse  -aaga---agaaa-g--------g---------tgtg---------------ag-gggcagc-----
B D                     Rat  -gaga---agaaa-g--------g---------tgtg---------------ag-aggcgga-----
B D          Naked mole-rat  -tgct---gcagg-a--------g---------ggcg---------------ca-ggct--------
                 Chinchilla  -cgct---gcgg----------------------------------------------t--------
B D                    Pika  ------------g-a--------g---------cctg---------------ag-cc----------
B D                   Horse  aagct---gaaga-g--------ggt-------ggtg---------------ag-acat---atg--
B D        White rhinoceros  aagct---gaaga-g--------ggt-------ggta---------------ag-acac---atg--
            Star-nosed mole  -agct---ggggg-g--------tgtgtggcagggca---------------agcacag---agg--
B D                Elephant  gagct---gaagg-g--------aat-------ggtg----------------a-gcac---aggct
        Cape elephant shrew  gagct---gaaat-g--------ggt-------ggtg---------------aa-gcac---aggtt
B D                 Manatee  gagct---gaagc-c--------aat-------ggtg----------------a-gcat---aggtg
           Cape golden mole  gagtt---gaagg-a--------gaa-------ggtg---------------ag-gcat---aggtg
B D                  Tenrec  gagct---tcagg-g--------gtt-------gatg---------------ag-acat---acatt
                   Aardvark  gagct---gaagt-g--------gat-------ggtg---------------ag-gcat---aagtg
B D                   Shrew  ===================================================================
B D                Hedgehog  ===================================================================
          Brush-tailed rat  ===================================================================
              Prairie vole  ===================================================================
          Black flying-fox  ===================================================================
              Weddell seal  ===================================================================
              Killer whale  ===================================================================
B D                   Panda  ===================================================================
             Big brown bat  ===================================================================
B D                     Cow  ===================================================================
             Domestic goat  ===================================================================
B D                   Sheep  ===================================================================
          Tibetan antelope  ===================================================================
B D                     Dog  ===================================================================
B D                 Ferret   ===================================================================
B D                     Cat  ===================================================================
            Pacific walrus  ===================================================================
B D                 Dolphin  ===================================================================
B D                  Rabbit  ===================================================================
            Bactrian camel  ===================================================================
B D                 Megabat  ===================================================================
B D                  Baboon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Pig  ===================================================================
B D                  Alpaca  ===================================================================

Inserts between block 33 and 34 in window
B D                  Mouse 11bp
B D                    Rat 8bp
B D         Naked mole-rat 1bp
                Chinchilla 1bp
       Cape elephant shrew 2bp

Alignment block 34 of 341 in window, 30844039 - 30844153, 115 bps 
B D                   Human  tg---gaa------gcctct------gtg-------------atta--ttt-------------------
B D                   Chimp  tg---gaa------gcctct------gtg-------------atta--ttt-------------------
B D                 Gorilla  tg---gaa------gcctct------gtg-------------atta--ttt-------------------
B D               Orangutan  tg---gaa------gcttct------gtg-------------atta--ttt-------------------
B D                  Gibbon  tg---gaa------gccttt------gtg-------------atta--ttt-------------------
B D                  Rhesus  tg---gaa------gcctct------gtg-------------atga--ttt-------------------
B D     Crab-eating macaque  tg---gaa------gcctct------gtg-------------atga--ttt-------------------
B D            Green monkey  tg---gaa------gcgtct------gtg-------------atta--ttt-------------------
B D                Marmoset  cg---gaa------gcctcttgaggaagg-------------atta--ttt-------------------
B D         Squirrel monkey  tg---gaa------gcctct------gtg-------------atta--ttt-------------------
B D                Bushbaby  ct---gag------cctctt------gtgttttttaaatttcttta--tttttgagacagggtctcattc
         Chinese tree shrew  taaatgag------gccttt------gag-----------cctttg--ttt-------------------
B D                Squirrel  -g---aga------gccttt------gag-------------ctct--gct-------------------
     Lesser Egyptian jerboa  ------tg------gtgtcacaaaggggg-------------ttct--gct-------------------
               Prairie vole  tg---gtg------gcccct------gag-------------ccct--gct-------------------
B D         Chinese hamster  -g---gtg------gcctct------gcg-------------ccct--gcc-------------------
             Golden hamster  -g---gtg------gccgct-----ggag-------------ccct--gcc-------------------
B D                   Mouse  ------tg------gctgcc------aag-------------ccct--gcc-------------------
B D                     Rat  ------tg------gctgcc------cag-------------ccct--gct-------------------
B D          Naked mole-rat  ca---gcg------ccctgt------ggg-------------ccaa--gct-------------------
                 Chinchilla  ca---gag------agcctc------tgg-------------cccg--gcc-------------------
B D                    Pika  -----------------------ttggag-------------cctgtagtt-------------------
B D                   Horse  ---tgaga------gcatct------ctg---------agcttcag--gtt-------------------
B D        White rhinoceros  ---ggaga------gtgtct------ctg---------agcttcag--ttt-------------------
            Star-nosed mole  ---gctga------gcctcc------ctg--------------------cc-------------------
B D                Elephant  ------------------tt------gag----------gctccag--ttt-------------------
        Cape elephant shrew  ---gggga------gctctg------gag----------cccccac--ttc-------------------
B D                 Manatee  ---gggga------gtcttt------gag----------cctctcg--ttt-------------------
           Cape golden mole  ---gggga------gtcttt------gaa----------cttctct--ttt-------------------
B D                  Tenrec  ---ggggagcaggtgtcttt------aca----------tctctag--ttt-------------------
                   Aardvark  ---gagaa------gccttt------gag----------gttgtag--ttt-------------------
B D                   Shrew  ======================================================================
B D                Hedgehog  ======================================================================
          Brush-tailed rat  ======================================================================
          Black flying-fox  ======================================================================
              Weddell seal  ======================================================================
              Killer whale  ======================================================================
B D                   Panda  ======================================================================
             Big brown bat  ======================================================================
B D                     Cow  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
B D                     Dog  ======================================================================
B D                 Ferret   ======================================================================
B D                     Cat  ======================================================================
            Pacific walrus  ======================================================================
B D                 Dolphin  ======================================================================
B D                  Rabbit  ======================================================================
            Bactrian camel  ======================================================================
B D                 Megabat  ======================================================================
B D                  Baboon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Pig  ======================================================================
B D                  Alpaca  ======================================================================

                      Human  ------------------------------------------gggga--aggctga-ttt--t-ctagtg
                      Chimp  ------------------------------------------gggga--aggctga-ttt--t-ctagtg
                    Gorilla  ------------------------------------------gggga--aggctga-ttt--t-ctagtg
                  Orangutan  ------------------------------------------gggga--aggctga-ttt--t-ctagtg
                     Gibbon  ------------------------------------------gggga--aggctga-ttg--t-ctagtg
                     Rhesus  ------------------------------------------gggga--aggctgg-ttt--t-ctagtt
        Crab-eating macaque  ------------------------------------------gggga--aggctgg-ttt--t-ctagtt
               Green monkey  ------------------------------------------gggga--aggctgg-ttt--t-ctagtt
                   Marmoset  ------------------------------------------gaaga--aggctgg-ttt--t-ctagtg
            Squirrel monkey  ------------------------------------------gggga--aggctgg-ttt--t-ctagtg
                   Bushbaby  tgttgcccatgctagagtgcagtggtgtcatcatagatcaaagggga--aggctga-ttt--t-ctggtg
         Chinese tree shrew  ------------------------------------------gggga--aggctgg-ttt--tcctggtg
                   Squirrel  ------------------------------------------ttagggaaggttgg-ttt--ttttggtg
     Lesser Egyptian jerboa  ---------------------------------------------------gctgt-ctcaggcccagcc
               Prairie vole  ------------------------------------------ggaga--aggctgg-ctt--ttctagtc
            Chinese hamster  ------------------------------------------tggatg-aggctgg-ctt--ttctagtc
             Golden hamster  ------------------------------------------tgggc--aagctga-ctt--ttctagtc
                      Mouse  ------------------------------------------tggaga-aggctgg-cgt--tcccagtc
                        Rat  ------------------------------------------tggagg-aggctgg-tgt--ttccagtc
             Naked mole-rat  ------------------------------------------gggg---aggccag-ttt--gcttcctc
                 Chinchilla  ------------------------------------------ggga---agctggg-cgg--g----cgc
                       Pika  ------------------------------------------gaggaa-aggctgc-tct--cctggggc
                      Horse  ------------------------------------------gggga--agcctggtttt--t-ctggtg
           White rhinoceros  ------------------------------------------gggga--aggcagg-ttt--t-ctggtg
            Star-nosed mole  ------------------------------------------agggc--ag------ttc--t----gca
                   Elephant  ------------------------------------------tggga--aggctgg-ttt--ttatggtg
        Cape elephant shrew  ------------------------------------------aggga--aggcttg-ttt--ttatggtg
                    Manatee  ------------------------------------------gggga--aggttgg-ttt--ttatggtg
           Cape golden mole  ------------------------------------------gggga--aggctgg-ttt--ttatgatg
                     Tenrec  ------------------------------------------gg---------ctg-ttt--ttggggtg
                   Aardvark  ------------------------------------------gggga--aggatgg-ttt--ttatggtg
                      Shrew  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                     Baboon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                        Pig  ======================================================================
                     Alpaca  ======================================================================

                      Human  c---------------------------------------------------------------------
                      Chimp  c---------------------------------------------------------------------
                    Gorilla  c---------------------------------------------------------------------
                  Orangutan  c---------------------------------------------------------------------
                     Gibbon  c---------------------------------------------------------------------
                     Rhesus  c---------------------------------------------------------------------
        Crab-eating macaque  c---------------------------------------------------------------------
               Green monkey  c---------------------------------------------------------------------
                   Marmoset  c---------------------------------------------------------------------
            Squirrel monkey  c---------------------------------------------------------------------
                   Bushbaby  caggactgatctttgctcctccaggattactgagttacttggtggcttgccttccaagtcataagaaatt
         Chinese tree shrew  c---------------------------------------------------------------------
                   Squirrel  c---------------------------------------------------------------------
     Lesser Egyptian jerboa  c---------------------------------------------------------------------
               Prairie vole  t---------------------------------------------------------------------
            Chinese hamster  c---------------------------------------------------------------------
             Golden hamster  c---------------------------------------------------------------------
                      Mouse  c---------------------------------------------------------------------
                        Rat  c---------------------------------------------------------------------
             Naked mole-rat  c---------------------------------------------------------------------
                 Chinchilla  c---------------------------------------------------------------------
                       Pika  c---------------------------------------------------------------------
                      Horse  c---------------------------------------------------------------------
           White rhinoceros  c---------------------------------------------------------------------
            Star-nosed mole  c---------------------------------------------------------------------
                   Elephant  t---------------------------------------------------------------------
        Cape elephant shrew  c---------------------------------------------------------------------
                    Manatee  c---------------------------------------------------------------------
           Cape golden mole  t---------------------------------------------------------------------
                     Tenrec  c---------------------------------------------------------------------
                   Aardvark  c---------------------------------------------------------------------
                      Shrew  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                     Baboon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                        Pig  ======================================================================
                     Alpaca  ======================================================================

                      Human  ----------------------cttgggctgggc------------------------------------
                      Chimp  ----------------------cttgggctgggc------------------------------------
                    Gorilla  ----------------------cttgggctgggc------------------------------------
                  Orangutan  ----------------------cttgggctgggc------------------------------------
                     Gibbon  ----------------------cttgggctgggc------------------------------------
                     Rhesus  ----------------------cttggcctgggc------------------------------------
        Crab-eating macaque  ----------------------cttggcctgggc------------------------------------
               Green monkey  ----------------------cttggcctgggc------------------------------------
                   Marmoset  ----------------------ctcgggctgggc------------------------------------
            Squirrel monkey  ----------------------ctccggctgggc------------------------------------
                   Bushbaby  tcaaggcttgccaggaaattgtcttgttctcagcaattcctcagatgagtcctgaaattggtgactgtta
         Chinese tree shrew  ----------------------ctcaggctgggc------------------------------------
                   Squirrel  ----------------------ctcaggctgggc------------------------------------
     Lesser Egyptian jerboa  ----------------------ctg---------------------------------------------
               Prairie vole  ----------------------ctgggggcagga------------------------------------
            Chinese hamster  ----------------------c-gggggtagga------------------------------------
             Golden hamster  ----------------------ctgggggcagga------------------------------------
                      Mouse  ----------------------ctggg-------------------------------------------
                        Rat  ----------------------ctgggggcacgt------------------------------------
             Naked mole-rat  ----------------------ctggca------------------------------------------
                 Chinchilla  ----------------------cgggca------------------------------------------
                       Pika  ----------------------cc----------------------------------------------
                      Horse  ----------------------ctcaggctgggc------------------------------------
           White rhinoceros  ----------------------ctcaggctgggc------------------------------------
            Star-nosed mole  ----------------------ctggggttgggc------------------------------------
                   Elephant  ----------------------ctcaggccgtgc------------------------------------
        Cape elephant shrew  ----------------------ctcaggctggac------------------------------------
                    Manatee  ----------------------ctcaggctgggc------------------------------------
           Cape golden mole  ----------------------ctcaaaatgggc------------------------------------
                     Tenrec  ----------------------ctccggctgggc------------------------------------
                   Aardvark  ----------------------ttcaggctgggt------------------------------------
                      Shrew  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                     Baboon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                        Pig  ======================================================================
                     Alpaca  ======================================================================

                      Human  -----------------------ccat------g-----caggtta-cttcctacccagctaccttcctg
                      Chimp  -----------------------ccat------g-----caggtta-cttcctacccagctaccttcctg
                    Gorilla  -----------------------ccat------g-----caggtta-cttcctacccagctaccttcctg
                  Orangutan  -----------------------ccat------g-----caggttaccttcctacccagctaccttcctg
                     Gibbon  -----------------------tcat------g-----caggttaccttcctactcagctaccttccta
                     Rhesus  -----------------------ccat------g-----caggtta----------------cctttcta
        Crab-eating macaque  -----------------------ccat------g-----caggtta----------------cctttcta
               Green monkey  -----------------------ccat------g-----taggtta----------------cctttcta
                   Marmoset  -----------------------ccaa------g-----cgggttaccttcctacccagctactttcctt
            Squirrel monkey  -----------------------ccat------g-----ccggttactttcctacccagctactttccta
                   Bushbaby  tagtaggcataatgttcaatcctccatagcaggg-----caggttacctttctacctagctcccttccta
         Chinese tree shrew  -----------------------c---------t-----caggtgacctcccttcctcgctgtcttccca
                   Squirrel  -----------------------ccag------g-----tgggttacc-ttcttattagccactttcctt
     Lesser Egyptian jerboa  ---------------------------------------taggtggccttcctaccttgctaccttcct-
               Prairie vole  -----------------------gaag------act---tgcgtggcc-------------tcctccct-
            Chinese hamster  -----------------------ggag------gct---cctgtggcc--cccgtctttccaccttcct-
             Golden hamster  -----------------------ggag------gcttcctccgtggcc-tcccgtcttgccacctccct-
                      Mouse  --------------------------g------gctg--gcagtggcc-tcccatctcgcctccctctt-
                        Rat  -----------------------ggag------gctg--gaagtggcc-ttccat----ccatctcctt-
             Naked mole-rat  ---------------------------------------caagcggtc------actttcggcctccct-
                 Chinchilla  --------------------------------------------ggac------gcaggcgggctccct-
                       Pika  ---------------------------------------tgtgggtct-tcctcctcagccaccttcct-
                      Horse  -----------------------ccag------g-----caggttaccttcctacctagctaccttccta
           White rhinoceros  -----------------------ccag------g-----caggttaccttcctacctagttaccttccta
            Star-nosed mole  -----------------------cacg-------------agattaccttcctgcctggccaccttccc-
                   Elephant  -----------------------ccac------g-----cagttcaccttccaagc----------ccta
        Cape elephant shrew  -----------------------ccag------g----------cacctcccaag-----------tcta
                    Manatee  -----------------------gcac------g-----caagtcaccttccaagc----------ccta
           Cape golden mole  -----------------------ccac------a-----cacatcaccttccaagc----------ccta
                     Tenrec  -----------------------caag------g-----cagggcaccttccaagc----------tctc
                   Aardvark  -----------------------ctgc------a-----caagtcaccttccaagt----------ccta
                      Shrew  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                     Baboon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                        Pig  ======================================================================
                     Alpaca  ======================================================================

                      Human  gctcttctgcccagggagct---c--ctt
                      Chimp  gctcttctgcccagggagct---c--ctt
                    Gorilla  gctcttctgcccagggagct---c--ctt
                  Orangutan  gctgttctgcacagggagct---c--ctt
                     Gibbon  gctgttctgcccagggagct---c--ctt
                     Rhesus  cctgttctgcccagggagtt---c-----
        Crab-eating macaque  cctgttctgcccagggagtt---c-----
               Green monkey  cctgttctgcccagggagtt---c-----
                   Marmoset  gctgtgctgcccacggagct---c--ctt
            Squirrel monkey  gctgttctgcccacggagct---c--ctt
                   Bushbaby  gctatccttccaaatgaact---cctctt
         Chinese tree shrew  gcccttcctccaggtgaggt---c-----
                   Squirrel  gctgcccttccaagtgagcc---c--ctt
     Lesser Egyptian jerboa  -----ccttctaagtgagca---t--ctt
               Prairie vole  -----ctacccaagtgagag---g--cta
            Chinese hamster  -----ctgtccaagcgagag---g--cag
             Golden hamster  -----ctgtccaagggagag---g--ctt
                      Mouse  -----ct--cccagcgagat---g--ctg
                        Rat  -----ct--cccagcgagat---g--ctg
             Naked mole-rat  -----cc--c-------------------
                 Chinchilla  -----cc--c-------------------
                       Pika  ------------ggtgagtg---c--ctc
                      Horse  gctgttcttccaagtgaact---c--ctt
           White rhinoceros  gctgttcttccaagtgagct---c--ctt
            Star-nosed mole  gccgcctgtgcaggggggcg---c--ctt
                   Elephant  gctgttcttccaagtgagcc---t--ttt
        Cape elephant shrew  gctgctcttccaagtgag--------ttt
                    Manatee  gctgttcttccaagtgaacc---t--ctt
           Cape golden mole  actgttcctccaagggaatc---t--cgt
                     Tenrec  cctgttgtcct----gagtc---t--ctc
                   Aardvark  gctgcttttccaagtaagtctgtt--ttt
                      Shrew  =============================
                   Hedgehog  =============================
           Brush-tailed rat  =============================
           Black flying-fox  =============================
               Weddell seal  =============================
               Killer whale  =============================
                      Panda  =============================
              Big brown bat  =============================
                        Cow  =============================
              Domestic goat  =============================
                      Sheep  =============================
           Tibetan antelope  =============================
                        Dog  =============================
                    Ferret   =============================
                        Cat  =============================
             Pacific walrus  =============================
                    Dolphin  =============================
                     Rabbit  =============================
             Bactrian camel  =============================
                    Megabat  =============================
                     Baboon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                        Pig  =============================
                     Alpaca  =============================

Inserts between block 34 and 35 in window
           Star-nosed mole 752bp

Alignment block 35 of 341 in window, 30844154 - 30844226, 73 bps 
B D                   Human  c------tgcc----agtccccag-cctactgcacttcttccttatatgctt-----------ggagtgt
B D                   Chimp  c------tgcc----agtccccag-cctactgcccttcttccttatatgctt-----------ggagtgt
B D                 Gorilla  c------tgcc----agtccccag-cctactgcccttcttccttatatgctt-----------ggagtgt
B D               Orangutan  c------tgcc----agtccccag-cctcctccccttcttccttatatgctt-----------ggagtgt
B D                  Gibbon  c------tgcc----agtccccag-cctcctgcccttcttccttatatactt-----------agagtgt
B D                  Rhesus  c------tgcc----agtccccag-cctcctgcccttctcccttatatgctt-----------ggagtgt
B D     Crab-eating macaque  c------tgcc----agtccccag-cctcctgcccttctcccttatatgctt-----------ggagtgt
B D            Green monkey  c------tgcc----agtccccag-cctcctgcccttctcccttatatgctt-----------ggagtgt
B D                Marmoset  c------ttcc----agtccccag--ctcctgcacttctcccttgtatgctt-----------ggagtgt
B D         Squirrel monkey  c------tgcc----agtccccag--ctcctgcccttctcccttgtatgctt-----------ggagtgt
B D                Bushbaby  c------tccc----agtctctgg-cttccttcccctgtcccttgc---tct-----------gggctgt
         Chinese tree shrew  -------tgcc----agctcctg---ctccttctctttgtcctt-catgtct-----------g------
B D                Squirrel  ac---tctatt----ggccttagatctccttctccttctcccttacatgtgt-----------ggcttgt
     Lesser Egyptian jerboa  gt---tctgct----cttctccag-ctccttgcacttctctcttacatgcct-----------cacttgt
               Prairie vole  -------cgta----ggtctttgg-ctccttccccgtctccgcgcggtgt-------------ggcgtgt
B D         Chinese hamster  -------tgtt----gctctctgg-caccttcctcatctctctgacgtgt-------------ggagtgt
             Golden hamster  -------tgct----gctctctgg-ctccttccccatctctctgacgcgcgcgg---------ggagtgt
B D                   Mouse  a------catc----ggtctctgg-cgccttccccatctctttaatatgc-------------ggagtgt
B D                     Rat  a------catc----ggtctctgg-cgcctt-cccatc-------tatgc-------------ggagtgt
B D          Naked mole-rat  -------tgcc----tgctctcgt-ttccttccccttctccctccccggcgtggcttgctccaggcttgc
                 Chinchilla  ---------------------cgt-ctccttccccttctcc-----------------ctcaaggcttgc
B D                    Pika  ccccgcctcgc----actctctggtctcctt--ccttctcccttgggctt-------------ggatcct
B D                   Horse  ------ctact----agtctcttgtctcctcccccttctcccttgcaagctt-----------ggcttgt
B D        White rhinoceros  ------ctact----agtctcctgtctccttccccttctcccttacatgctt-----------ggattgt
            Star-nosed mole  ------ctgct----ggtctcctgtct--gtctgtctttcccttgtatgctt-----------tgcttgt
B D                Elephant  ------ttcct----a----ccagtctctttccccttctcccatacatgctt-----------ggattgt
        Cape elephant shrew  ------cttct----a----ccattctccttcgccttctcccacacatgctt-----------ggattgt
B D                 Manatee  ------ctacc----agtctccaatctccttccccttctcacatacacgctt-----------ggattgt
           Cape golden mole  ------ctacc----agtcttcagcggctttctccttctcctacacatgctt-----------ggattgt
B D                  Tenrec  ------ctacttccaagtctcca--gactcttcctttccc--------gctg-----------ggattgc
                   Aardvark  ------ctacc----agtctccagtctccttccccttttctcatacatgctt-----------ggattgt
B D                   Shrew  ======================================================================
B D                Hedgehog  ======================================================================
          Brush-tailed rat  ======================================================================
          Black flying-fox  ======================================================================
              Weddell seal  ======================================================================
              Killer whale  ======================================================================
B D                   Panda  ======================================================================
             Big brown bat  ======================================================================
B D                     Cow  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
B D                     Dog  ======================================================================
B D                 Ferret   ======================================================================
B D                     Cat  ======================================================================
            Pacific walrus  ======================================================================
B D                 Dolphin  ======================================================================
B D                  Rabbit  ======================================================================
            Bactrian camel  ======================================================================
B D                 Megabat  ======================================================================
B D                  Baboon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
B D                     Pig  ======================================================================
B D                  Alpaca  ======================================================================

                      Human  gtgga-atgc--tgct---caccactctggg
                      Chimp  gtgga-atgc--tgct---caccactctggg
                    Gorilla  gtgga-atgc--tgct---caccactctggg
                  Orangutan  gtgga-atgc--tgct---caccactctggg
                     Gibbon  gtgga-atgc--tgct---caccactctggg
                     Rhesus  gtgga-atgc--tgct---caccactctgag
        Crab-eating macaque  gtgga-atgc--tgct---caccactctggg
               Green monkey  gtgga-atgc--tgct---cactactctggg
                   Marmoset  gtgga-atgc--tgct---caccactctggg
            Squirrel monkey  gtgga-atgc--tgct---caccactctggg
                   Bushbaby  gtgga-attc--tgct---ggctactctggg
         Chinese tree shrew  ------------------------ctctgga
                   Squirrel  aagga-atgc--tgtt---cactgttcagga
     Lesser Egyptian jerboa  gtgga-atgcaatgctgccctctgctcaggg
               Prairie vole  gtgga-atgctccgct---cactgctcacaa
            Chinese hamster  gtgga-atgctgtgct---cacttctcacaa
             Golden hamster  gtgga-atgctgcgct---cacttctcccaa
                      Mouse  ggaaatgtgtgttgct---cattcctcacaa
                        Rat  ggatgtgtgtgttgct---cattcctcagga
             Naked mole-rat  tcgga-atgt--ggct---ccctcctcagag
                 Chinchilla  gagga-atgc--ggct---ccctcctcccag
                       Pika  atgga-atgc--tgtt---tgctactctgtg
                      Horse  gtgga-atgc--tgct---caccaccctcag
           White rhinoceros  gtgga-atgc--tgct---caccaccccagg
            Star-nosed mole  gtgga-atgc--tgct---ccctacctcta-
                   Elephant  gcgga-atgc--tgcc---caccaccctggg
        Cape elephant shrew  gtgga-atgc--tgcc---caccaccatgga
                    Manatee  gtgga-atgc--tgcc---caacaccctggg
           Cape golden mole  atgga-atgt--tgcc---cactactctgag
                     Tenrec  gtgga-atgc--tgcc---catca--cgggg
                   Aardvark  gtgga-atgc--tgcc---caccaccctggg
                      Shrew  ===============================
                   Hedgehog  ===============================
           Brush-tailed rat  ===============================
           Black flying-fox  ===============================
               Weddell seal  ===============================
               Killer whale  ===============================
                      Panda  ===============================
              Big brown bat  ===============================
                        Cow  ===============================
              Domestic goat  ===============================
                      Sheep  ===============================
           Tibetan antelope  ===============================
                        Dog  ===============================
                    Ferret   ===============================
                        Cat  ===============================
             Pacific walrus  ===============================
                    Dolphin  ===============================
                     Rabbit  ===============================
             Bactrian camel  ===============================
                    Megabat  ===============================
                     Baboon  NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
                        Pig  ===============================
                     Alpaca  ===============================

Alignment block 36 of 341 in window, 30844227 - 30844388, 162 bps 
B D                   Human  gcagttggagact----gaga-taact--ccctccctggaatgt--agggaattt-ggtgtgct------
B D                   Chimp  gcagttggagact----gaga-taact--ccctccctggaatgt--agggaattt-ggtgtgct------
B D                 Gorilla  gcagttggagact----gagattaact--ccctccctggaatgt--agggaattt-ggtgtgct------
B D               Orangutan  gcagctggagact----gaga-taact--ccctccctagaatgt--agggaattt-ggtgtgct------
B D                  Gibbon  gcagctggagact----gaga-taact--cccatcctggaatgt--agggaattt-ggtgtgct------
B D                  Rhesus  gcagcgggagact----gaga-taact--ccctccctggaatgt--agggaattt-ggtgtgct------
B D     Crab-eating macaque  gcagcgggagact----gaga-taact--ccctccctggaatgt--agggaattt-ggtgtgct------
B D                  Baboon  gcagctggagact----gaga-taact--ccctccctggaatgt--agggaattt-ggtgtgct------
B D            Green monkey  gcagctggagact----gaga-taact--ccctccctggaatgt--agggaattt-gatgtgct------
B D                Marmoset  gcagctggagact----caga-taact--ccctccctggaatgt--agggaatct-ggtgtgct------
B D         Squirrel monkey  gcagctggagact----cagc-gaact----ctccctggaatgt--agggaatct-ggtgtgct------
B D                Bushbaby  gcagctggagact----gaga-taact--ccctttcaggaatgc--agaaaatgt-ggggtgt-------
         Chinese tree shrew  gtggctgtggact----gagg-tgacg--ctc-ccctgtaatgt--agaaaacac-ggggaaca------
B D                Squirrel  gcagctggatatt----gaga-taact--ccctccctggaatgt--agagaatgaagaggaaga------
     Lesser Egyptian jerboa  gcagctggagcct----gaga-taact--ccctctctgaaatgg--ggagaattg-ggggtgcc------
               Prairie vole  gcagctggagact----gaga-taact--ccctccctggaatct--agagaattc-ggggtgct------
B D         Chinese hamster  gcagctggagact----gaga-taact--ccctccctggaatct--agagaattc-ggggtact------
             Golden hamster  gcagctggagatt----gaga-taact--ccctccctggaatct--agagaattc-ggggtgct------
B D                   Mouse  gcagctggagact----gaga-taact--ccctccctggaatgt--agagaatttgggggtgct------
B D                     Rat  gcagctggggact----gaga-taact--ccctccaaggaatgt--agagaatttgggggtgct------
B D          Naked mole-rat  gcagctggagt-t----gagc-tggct--ccctccctggaatgc--agagaattc-gaggtgct------
                 Chinchilla  gcagctggggc-------agc-tcact--ccctccctggaatgc--ggagaatcc-gaggtgct------
B D                    Pika  gcagctggggtcccatggaaa-gtgct--ccttccctggaatgtgaaaagaatct-gggaagca------
B D                   Horse  gcagctggggact----gaga-taact--ccctccctggaatgt--agaaaatct-ggggggct------
B D        White rhinoceros  gcagctggggact----gaga-taact--ccctccctggaatgt--agaaaatct-gggggact------
            Star-nosed mole  gcagctggaaaca----ggga-taact--gcctttctagaatgt--agaaaatct-ggga---t------
B D                Elephant  gcagctggagact----gaga-gaact--ccctccctggaatgt--agaacatct-ggggtgct------
        Cape elephant shrew  gcagctggagact------ga-gaact--ccctccctggaatgt--agaacatct-gggatgct------
B D                 Manatee  gcagctggagact----gaga-gaact--ccctttctggaatgt--agaacatct-ggggtgct------
           Cape golden mole  gcagctagag-------------aact--cctttcatggaatgt--agaacatct-ggagtgctagacgc
B D                  Tenrec  gcagctggggcct----gagc-aatca--ctctccctggaatgt--agcacgtgg-agggtgct------
                   Aardvark  gcagctggagact----gaga-gaactccccctccctggaatgt--agaacatct-ggggtgtt------
B D                   Shrew  ======================================================================
B D                Hedgehog  ======================================================================
          Brush-tailed rat  ======================================================================
          Black flying-fox  ======================================================================
              Weddell seal  ======================================================================
              Killer whale  ======================================================================
B D                   Panda  ======================================================================
             Big brown bat  ======================================================================
B D                     Cow  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
B D                     Dog  ======================================================================
B D                 Ferret   ======================================================================
B D                     Cat  ======================================================================
            Pacific walrus  ======================================================================
B D                 Dolphin  ======================================================================
B D                  Rabbit  ======================================================================
            Bactrian camel  ======================================================================
B D                 Megabat  ======================================================================
B D                     Pig  ======================================================================
B D                  Alpaca  ======================================================================

                      Human  ---------------------gg----aaa-----------------------gagagaaagagag-ag-
                      Chimp  ---------------------gg----aaa-----------------------gagagaaagagag-ag-
                    Gorilla  ---------------------gg----aaa-----------------------gtgagaaagggag-ag-
                  Orangutan  ---------------------gg----aaa-----------------------gagagaaagagag-ag-
                     Gibbon  ---------------------gg----aaa-----------------------gagagaaagagag-ag-
                     Rhesus  ---------------------gg----aaa---------------------------------gag-ag-
        Crab-eating macaque  ---------------------gg----aaa---------------------------------gag-ag-
                     Baboon  ---------------------gg----aaa---------------------------------gag-ag-
               Green monkey  ---------------------gg----aa-----------------------------------ag-ag-
                   Marmoset  ---------------------gg----aa-------------------------------agagag-ag-
            Squirrel monkey  ---------------------gg----taa-------------------------gagggagagag-ag-
                   Bushbaby  ---------------------------------------------------------------aag-ag-
         Chinese tree shrew  ---------------------gg----aga-----------------------gagagagagggagaag-
                   Squirrel  ---------------------ga----agg---------------------------------gag-aa-
     Lesser Egyptian jerboa  ---------------------tt----gga----caaagagtg--------agagggcaaggggag-at-
               Prairie vole  ---------------------gt----aga------gagagagagctagcaagagagccagaagag-ag-
            Chinese hamster  ---------------------gt----ggg---------------------------------gag-ag-
             Golden hamster  ---------------------gt----gcgcgcgcggggagag--------agagggccagaagag-ag-
                      Mouse  ---------------------gcagagagg---------------------------------cag-ag-
                        Rat  ---------------------gc----ggg---------------------------------aag-ag-
             Naked mole-rat  ---------------------gg----gga---------------------------------ggg-gt-
                 Chinchilla  ---------------------gg----gga---------------------------------gcg-ggc
                       Pika  ---------------------gg----ggg----------------------------tgggcgaa-gg-
                      Horse  ---------------------gg----ggg-------------------------------gagag-ag-
           White rhinoceros  ---------------------gg----aga-------------------------------gagag-ag-
            Star-nosed mole  ---------------------gc----ggg-------------------------------gagaa-ac-
                   Elephant  ---------------------ag----a-----------------------------------gag-gg-
        Cape elephant shrew  ---------------------gg----gat---------------------------------gag-gg-
                    Manatee  ---------------------ag----a-----------------------------------aag-gg-
           Cape golden mole  aggggtagaggttggttctgggg----ggt---------------------------ggggtggtg-gt-
                     Tenrec  ---------------------gg----ggc---------------------------agggtgggg-gg-
                   Aardvark  ---------------------------------------------------------------agg-gg-
                      Shrew  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                        Pig  ======================================================================
                     Alpaca  ======================================================================

                      Human  -ggaga---------cagaa--------tg-ta-----ccttgcagcagcacagctgg-gttctggat--
                      Chimp  -ggaga---------cagaa--------tg-ta-----ccttgcagcagcacagctgg-gttctggat--
                    Gorilla  -ggaga---------cagaa--------tg-ta-----ccttgcagcagcacagctgg-gttctggat--
                  Orangutan  -ggaga---------gagaa--------tg-ca-----ccttgcagcagcacaactgg-gttctggat--
                     Gibbon  -ggaga---------gagag--------tg-ca-----ccttgcagcagcacagccgg-gttctggat--
                     Rhesus  -ggaga---------gagaa--------tg-ca-----ccttgcagcagcacagacgg-gttctggat--
        Crab-eating macaque  -ggaga---------gagaa--------tg-ca-----ccttgcagcagcacagacgg-gttctggat--
                     Baboon  -gaaga---------gagaa--------tg-ca-----ccttgcagcagcacagacgg-gttctggat--
               Green monkey  -ggaga---------gagaa--------tg-ca-----ccttgcagcagcacagacgg-gttctggat--
                   Marmoset  -ggaga---------gagaa--------tg-ca-----ccttgcagaagcacagccgg-gttctggcc--
            Squirrel monkey  -ggaga---------gagaa--------tg-ca-----ccttgcagcagcacagccgg-gttctggcc--
                   Bushbaby  -ggaca---------aggaa--------ag-----------------aggagagtcaatgtcctggac--
         Chinese tree shrew  -agaga---------gaaag--------gg-caaatgcccttggagctgc-cagccag-gatctgggc--
                   Squirrel  -agagagtcaca---gttaa--------tgccc-----ccttgaagttattcaatcag-ggtctggac--
     Lesser Egyptian jerboa  -agggagccagc---atcca--------tg-ac-----tcttggagctgag--ggcag-gacctgggc--
               Prairie vole  -agggagttggc---gtcaacgcctctcag-cc-----tctcggcgctgtc--agtgg-gacctggac--
            Chinese hamster  -agggagttggc---gtcaa--------ag-cc-----tctctgagctgtc--agcag-gacctggcc--
             Golden hamster  -agggagttggc---gtcaa--------ag-cc-----tctcggagctgtc--agcgg-gacctggcc--
                      Mouse  -agcgagctagc---gagag--------gg-cc-----tctcggagctgtc--agcag-gacctggac--
                        Rat  -aaagagctagt---gagaa--------gg-cc-----tctcagagctgtc--agcag-gacctggac--
             Naked mole-rat  -gggggaccggccgagtcag--------gg-tc------ctcggggctgtg------c-ggccagcgca-
                 Chinchilla  agagagaccagcgcagtcgg--------tg-tc------ccgggcgccgtg------c-ggcc-gcacgc
                       Pika  -aggagactag----gagag--------ag-----------------------aagag-gagc-------
                      Horse  -gtgga---------gtgaa--------tg-tt-----ccttggagctgaacatctgg-ggtctggcc--
           White rhinoceros  -gcaga---------gtcaa--------tg-tc-----ccttggagctgaacatctgg-ggtctggac--
            Star-nosed mole  -atgga---------gccaa--------tg-t------ccttggaactgcaccctccg-gatctgga---
                   Elephant  -agggg----------gcag--------ag-cc-----ttt----------------------tggac--
        Cape elephant shrew  -tgggg---------cacag--------tg-cc-----tcttggga-----------------tgggc--
                    Manatee  -agggg----------gcag--------tg-cc-----tgttagagtggtacactcag-gatctggac--
           Cape golden mole  -aggga---------gatag--------tg-tc-----tcttggaat----------------ggtgc--
                     Tenrec  -tggga---------gggca--------tg-ct-----tcttggagt----------------gggac--
                   Aardvark  -tgggg----------gcag--------tg-cc-----tcttgcagtgacacact--------cagac--
                      Shrew  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                        Pig  ======================================================================
                     Alpaca  ======================================================================

                      Human  gg----gctccatct---ctgaaagag-aggggcaaaagggttggggaaggg--g
                      Chimp  gg----gctccatct---ctgaaagag-aggggcaaaaaggttggggaaggg--g
                    Gorilla  gg----gctccatct---ctgaaagag-aggggcaaaagggttggggaaggg--g
                  Orangutan  gg----gctccatct---ctgaaagac-agggacaagagggttggggaaggg--g
                     Gibbon  gg----gctccatct---ctgaaagag-agggacaagagggttggggcaggg--g
                     Rhesus  gg----gctccatct---cggaaagag-aggaacaagagggttggggaaggg--g
        Crab-eating macaque  gg----gctccatct---cggaaagag-aggaacaagagggttggggaaggg--g
                     Baboon  gg----gctccgtct---cggaaagag-aggaacaagagggttggggaaggg--g
               Green monkey  gg----gctccatct---cagaaagag-aggaacaagagggttggggaaggg--g
                   Marmoset  gg----gctccatct---ctgaaagag-agggatgagagggttggggaaggg--a
            Squirrel monkey  cg----gctccatct---ctgaaagag-agggacgagaaggtt-gggaaggg--a
                   Bushbaby  ag----gctccctcc---ctgaaggag-agggaaaagaaag-tggggaggag--g
         Chinese tree shrew  ag----gctccatct-----gcaaggg-agggac-acacggttagggaggagcag
                   Squirrel  aa----gttccatct---gtgagagag------------gagtgaggggggg---
     Lesser Egyptian jerboa  ag----gcatcatca---gtga--gag-atgggcaaggggtctgaggtatgg--g
               Prairie vole  ag----gatccatct---ctgaaagag-ctgggccccagc-ctgggggaggg--g
            Chinese hamster  ag----gacccatct---ctgaaagag-atgggcagtggggctgggggaggg--a
             Golden hamster  ag----gatccatgt---ctgaaagagaatgggcagcggtgctgggggaggg--g
                      Mouse  ag----gatccatct---ctgaaggag-ctgggcctcaggactgggggaggg--g
                        Rat  ag----gatccatct---ctgaagtag-cagggctggagggctggaggagga--g
             Naked mole-rat  ag----gctccaactctgcggacggag-ccgggc---------gggggcggg--g
                 Chinchilla  ag----gctccggcc---gggacggga---aggc---------gggggcggc--g
                       Pika  ag----gagcc-ttt---gggaaagag----------------------------
                      Horse  ag----gctccatct---ctgaaaggg-aggggtatgggg---------------
           White rhinoceros  ag----gctccatct---ctgaaaggg-agggttgtcggg---------------
            Star-nosed mole  ag----gttctatct---ctaaa--------------------------------
                   Elephant  ag----gctccatct---gtgaaagag-aagggcagtgaggttgaaaagcgg---
        Cape elephant shrew  ag----gttccatat---ctgaaagtg-agaggcagtggaattgaagagggg---
                    Manatee  ag----gctccatct---ctgaaagtg-aagggcagtagggttgaagaaggg---
           Cape golden mole  atgctcgctccatct---ttgaaagtg-aggaacaat-ggattgaagaggga---
                     Tenrec  ag----gctccatgt---cgataagga-aggggccat-gggtggaagacggg---
                   Aardvark  ag----gctgcatct---c--aaagtg-aggggc-gtggggttggagagggg---
                      Shrew  =======================================================
                   Hedgehog  =======================================================
           Brush-tailed rat  =======================================================
           Black flying-fox  =======================================================
               Weddell seal  =======================================================
               Killer whale  =======================================================
                      Panda  =======================================================
              Big brown bat  =======================================================
                        Cow  =======================================================
              Domestic goat  =======================================================
                      Sheep  =======================================================
           Tibetan antelope  =======================================================
                        Dog  =======================================================
                    Ferret   =======================================================
                        Cat  =======================================================
             Pacific walrus  =======================================================
                    Dolphin  =======================================================
                     Rabbit  =======================================================
             Bactrian camel  =======================================================
                    Megabat  =======================================================
                        Pig  =======================================================
                     Alpaca  =======================================================

Inserts between block 36 and 37 in window
    Lesser Egyptian jerboa 4664bp
            Golden hamster 4bp
B D         Naked mole-rat 1bp
                Chinchilla 3bp
B D                   Pika 2bp

Alignment block 37 of 341 in window, 30844389 - 30844516, 128 bps 
B D                   Human  tagctg----------------------------------------------------------ccggtc
B D                   Chimp  tagctg----------------------------------------------------------ccggtc
B D                 Gorilla  tagctg----------------------------------------------------------ccggtc
B D               Orangutan  tggctg----------------------------------------------------------ccagtc
B D                  Gibbon  cggctg----------------------------------------------------------ccggtc
B D                  Rhesus  tggctg-----ctggtctcagtgaagg--------gtacgcgaggccctcgcg--------tgtctggtc
B D     Crab-eating macaque  tggctg----------------------------------------------------------ctggtc
B D                  Baboon  tggcag----------------------------------------------------------ct----
B D            Green monkey  tggctg----------------------------------------------------------ctggtc
B D                Marmoset  tggctg----------------------------------------------------------ccgatc
B D         Squirrel monkey  tggctg----------------------------------------------------------ctggtc
B D                Bushbaby  tgagta-----------------------------------------------------------tggtc
         Chinese tree shrew  tctctgtgcagccaggatctgggcaggctccatctgcaagggagggacacacggttagggaggagcggtc
B D                Squirrel  tgggtg----------------------------------------------------------ccggtc
               Prairie vole  cggacg----------------------------------------------------------gcagtc
B D         Chinese hamster  -ggatg----------------------------------------------------------gcagtc
             Golden hamster  tggccg----------------------------------------------------------gcagtc
B D                   Mouse  tggatg----------------------------------------------------------gcagtc
B D                     Rat  -ggatg----------------------------------------------------------gcagtc
B D          Naked mole-rat  -----------------------------------------------------------------aggct
                 Chinchilla  -----------------------------------------------------------------cggct
B D                    Pika  tggctg----------------------------------------------------------cccttc
B D                   Horse  gggctg----------------------------------------------------------caggtc
B D        White rhinoceros  gggctg----------------------------------------------------------cgggtc
            Star-nosed mole  ggaatg----------------------------------------------------------cagatc
B D                Elephant  --accg----------------------------------------------------------tgggtg
        Cape elephant shrew  --cagg----------------------------------------------------------caggtg
B D                 Manatee  --accg----------------------------------------------------------tgggtg
           Cape golden mole  --atca----------------------------------------------------------tgggtc
B D                  Tenrec  --gctg----------------------------------------------------------caggg-
                   Aardvark  --acct----------------------------------------------------------caggtc
B D                   Shrew  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
B D                Hedgehog  ======================================================================
          Brush-tailed rat  ======================================================================
          Black flying-fox  ======================================================================
              Weddell seal  ======================================================================
              Killer whale  ======================================================================
B D                   Panda  ======================================================================
             Big brown bat  ======================================================================
B D                     Cow  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
B D                     Dog  ======================================================================
B D                 Ferret   ======================================================================
B D                     Cat  ======================================================================
            Pacific walrus  ======================================================================
B D                 Dolphin  ======================================================================
B D                  Rabbit  ======================================================================
            Bactrian camel  ======================================================================
B D                 Megabat  ======================================================================
B D                     Pig  ======================================================================
B D                  Alpaca  ======================================================================

                      Human  -------ttagtgaagggtccccgaggcactagcgtgtcc-----------t----cacat---------
                      Chimp  -------ttagtgaagggtccccgaggcactagcgtgtcc-----------t----cacat---------
                    Gorilla  -------ttagtgaagggtccccgaggcactagcgtgtcc-----------t----cacat---------
                  Orangutan  -------ttagtgaagggtccccaaggcactagcgtgtcc-----------t----cacat---------
                     Gibbon  -------ttagtgaagggtccctgaggcactagcgtgtcc-----------t----cacat---------
                     Rhesus  -------tcagtgaagggtacgcgaggccctagcgtgtct-----------t----cgcat---------
        Crab-eating macaque  -------tcagtgaagggtacgcgaggccctagcgtgtct-----------t----cgcat---------
                     Baboon  -----------------------gagaccctagcgtgttt-----------t----tgcat---------
               Green monkey  -------tcagtgaagggtccgcgaggcactagcgtgtct-----------t----cgcat---------
                   Marmoset  -------ttagtgaagggtccctgaggcactagcatgtcc-----------t----tacat---------
            Squirrel monkey  -------tgagtgtagggtccctgaggcactagcatgtcc-----------t----cacag---------
                   Bushbaby  -------ctagtgaagagtccctgaggcac-agcatgtct-----------t----catat---------
         Chinese tree shrew  -------tctgcgcaggacccctgaggcagtaccgggtct-----------t------cca---------
                   Squirrel  -------ttagtgaagagt--ttgggtcatgagcatgtcc-----------t----ca-gt---------
               Prairie vole  -------ttagagaagggtccctgggatgctagtatgtat-----------t----catgt---------
            Chinese hamster  -------ttagagaatggtcccaggaatactagtacgcac-----------t----catgt---------
             Golden hamster  -------ttagcgatgggaccctgggatactagtccacgc-----------t----cgtgt---------
                      Mouse  -------ttagagaagggtccctgggatactggtatgtgg-----------t----tatgc---------
                        Rat  -------ttagagaaagatctctgggatacttgtatgtgc-----------t----cacgt---------
             Naked mole-rat  -------gccgag-----------------------gtcc-----------t----cgcg----------
                 Chinchilla  -------ccggag--cggtccctggggcgtcagcacgccc-----------t----ggcg----------
                       Pika  -------tcag-----------tccaaccccagcaggtcc-----------t----aacac---------
                      Horse  -------ttagtgaggggtccctgaggcactaccatgtcccacatccctgcc----cagat---------
           White rhinoceros  -------ttagtgaagggtccctgaggcactagcatgtcccacttccctgcc----cagat---------
            Star-nosed mole  -------ttagtgaggtgtccctgagacagcaccctgtcctac--cccta-c----cggtt---------
                   Elephant  -------ttagtgaagggtccctgaggcactagagtatct-----------g----catatctctgccca
        Cape elephant shrew  ctgggctttaaggaagggtccccaaggcactagtgtgtcc-----------a----cacatttctgctca
                    Manatee  -------ttagtgaagggtccctgaggcactagagtgccc-----------g----catatctctgccca
           Cape golden mole  -------ttagtgaagggtccccaaggaactcatgtgtct-----------g----cacatctctgccta
                     Tenrec  -------ttagggaagggccccccagga--tcgtgtcttt-----------gcgcacacagctcttccca
                   Aardvark  -------ttagtgaagggt-cctgaggcactggtgtgtct-----------g----cacatctctgcccc
                      Shrew  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                        Pig  ======================================================================
                     Alpaca  ======================================================================

                      Human  ---ttgtgctg----cctgctt-cccagaagactc-agcacatg------gggaaagtggtgcc------
                      Chimp  ---ttgtgctg----cctgctt-cccagaagactc-agcacatg------gggaaagtggtgcc------
                    Gorilla  ---ttgtgctg----cctgctt-cccagaagactc-agcacatg------gggaaagtggtgcc------
                  Orangutan  ---ttgcgctc----cctgctt-cccagaacactc-agcatgtg------ggggaagtggtgcc------
                     Gibbon  ---ttgcgctg----cctgctt-cccagaagacgc-agcacatg------ggggaagtggtgcc------
                     Rhesus  ---ttgcgccg----cctgctt-cccagaagactc-ggcacatg------ggggaagtggtgcc------
        Crab-eating macaque  ---ttgcgccg----cctgctt-cccagaagactc-ggcacatg------ggggaagtggtgcc------
                     Baboon  ---ttgcgctg----cctgctt-cccagaagactc-agcacatg------ggggaggtggtgcc------
               Green monkey  ---ttgcgctg----cctgctt-cccagaagactc-ggcacatg------ggggaagtggtgcc------
                   Marmoset  ---ttgctttg----cctgctt-cccagaagactc-agcacatg------ggggaaatgttgcc------
            Squirrel monkey  ---ttgctttg----cctgctt-cacggaagactc-agcacatg------ggggaagtgttgcc------
                   Bushbaby  ---ttgcagtg----------------------------acaga------ggggacgttgtgcc------
         Chinese tree shrew  ---ctgcagtg----cctgccc-cccag--gactt-ggcacctg------ggggaggtgaggtc------
                   Squirrel  ---gtgcagtg----actgctt-cc-----------ggca---------ttggaaagtggtacc------
               Prairie vole  ---ttgcaggg----accactt-cccaa-agagac-agcaggtg-----cggcaaagtagagcc------
            Chinese hamster  ---ttgcaggg----accactt-cccca-aaagac-agcaagt-------gggaaagtggtgcc------
             Golden hamster  ---ttgcagggaccaaccactt-cccaa-aaagacgggcgagt-------gggaaagtggtgcc------
                      Mouse  ---ctgtaggg----accgtgc-cttaa-aaagat-aggaagtggggactggagagatggctcagcagtt
                        Rat  ---ctgcaggg----accctgc-ctcaa-aaagat-aggaagtaggggctggggagatggctcag-----
             Naked mole-rat  ---ctgcggta----gcggctt-ctcc--ggagat-ggcacag-------gggaaggcggggc-------
                 Chinchilla  ---ctgcagag----accactc-ctcc--gaagac-cgcccaa-------ggggaagtggggc-------
                       Pika  ---tagtagtg----gctgctt-tccagtgcactc-agcactt-------ggggccatggtgcc------
                      Horse  ---ttgcagtg----actgctt-cccagaagactc-agctcatg------gaagagaaggtgca------
           White rhinoceros  ---ttgcagtg----accgctt-cccagaagactc-agctcatg------gaagaaaaggtgcg------
            Star-nosed mole  ---tggcagtg--------------------------gcacatg------gaag---ctgtgca------
                   Elephant  gatttgcagtg----gctgctt-cccagaagactc-agcacatg------gaagaagctgtgct------
        Cape elephant shrew  gatttgtagtg----actgttt-cccacaagacac-agcacata------gaagctgatat---------
                    Manatee  gatttgcagtg----actgctt-tgtagaagactc-agcacatg------gaagaagctgtgct------
           Cape golden mole  gat---------------------------gactc-tgcacata------gagggaactatact------
                     Tenrec  ga-------------------------------tc-tg----ta------gggaccgcttccca------
                   Aardvark  gaattgtagtg----actccttccccagaagactc-agcaaatg------gaggaagctgtgct------
                      Shrew  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                        Pig  ======================================================================
                     Alpaca  ======================================================================

                      Human  ----------------------aagggca-ca-cccac---------cagccac-actgtgg
                      Chimp  ----------------------aagggca-ca-cccac---------cagccac-actgtgg
                    Gorilla  ----------------------aagggca-ca-cccac---------cagccac-actgtgg
                  Orangutan  ----------------------aagggca-ca-gccat---------cagccac-actgtgg
                     Gibbon  ----------------------aagggca-ca-gccac---------cagccac-actgtgg
                     Rhesus  ----------------------aagggca-ca-cccac---------cagtcac-actgtgg
        Crab-eating macaque  ----------------------aagggca-ca-cccac---------cagtcac-actgtgg
                     Baboon  ----------------------aagggca-ca-cccac---------cagtcat-actgtgg
               Green monkey  ----------------------aagggca-ca-cccac---------cagtcac-actgtgg
                   Marmoset  ----------------------aagggca-ca-cccac---------ccgccac-actgtgg
            Squirrel monkey  ----------------------aagggca-ca-cccac---------ccacgac-actgtgg
                   Bushbaby  ----------------------aatggtgtta-tcca-----------agccat-gctgtgg
         Chinese tree shrew  ----------------------agagccc-cg-ct--------------gtgactgctgt-g
                   Squirrel  ----------------------aaaggca-tg-gccct---------ttgcagc-actgtgc
               Prairie vole  ----------------------ggagccc-cgttgctc---------ccaccac-gctgggc
            Chinese hamster  ----------------------gaagctg-ca-agctc---------ccaccat-gctgtgc
             Golden hamster  ----------------------gaagccg-cg-tgctc---------ccaccat-gctgtgc
                      Mouse  aagagaattgactgctctgccagaggtcc-tg-agttcaattcccaacaaccac-ttggtgg
                        Rat  ----------------------gaggtcc-ta-aattcaaatcccagcaaccac-ggggtgg
             Naked mole-rat  ----------------------gaggcca-tg-gcccc------------ctgc-gctgc--
                 Chinchilla  ----------------------ctggcca-cg-gccgc---------cagctgc-gctgc--
                       Pika  ----------------------aaagccc-at-cacgg----------aagcag-ggtgtgg
                      Horse  ----------------------gaagcca-cagcccgc---------cggccct-gctgcaa
           White rhinoceros  ----------------------gaagcca-cagcccac---------cagccat-gttgtgg
            Star-nosed mole  ----------------------gacccca-------gc---------cagccat-g-----g
                   Elephant  ----------------------gaagcca-cagcccat---------cagccag-gctgtgt
        Cape elephant shrew  --------------------------------ggccac---------cagccgt-tctgtgt
                    Manatee  ----------------------gaagcca-tagcccac---------cagccat-gctgtgt
           Cape golden mole  ----------------------gaagcca-tagctcat---------cagccat-gccgtgt
                     Tenrec  ----------------------gaaagct-cagcccgt---------ggagaaa-gttgtg-
                   Aardvark  ----------------------gaagccc-tactacac---------cagccat-gctgtgt
                      Shrew  ==============================================================
     Lesser Egyptian jerboa  ==============================================================
                   Hedgehog  ==============================================================
           Brush-tailed rat  ==============================================================
           Black flying-fox  ==============================================================
               Weddell seal  ==============================================================
               Killer whale  ==============================================================
                      Panda  ==============================================================
              Big brown bat  ==============================================================
                        Cow  ==============================================================
              Domestic goat  ==============================================================
                      Sheep  ==============================================================
           Tibetan antelope  ==============================================================
                        Dog  ==============================================================
                    Ferret   ==============================================================
                        Cat  ==============================================================
             Pacific walrus  ==============================================================
                    Dolphin  ==============================================================
                     Rabbit  ==============================================================
             Bactrian camel  ==============================================================
                    Megabat  ==============================================================
                        Pig  ==============================================================
                     Alpaca  ==============================================================

Inserts between block 37 and 38 in window
B D                  Mouse 161bp
B D                    Rat 6bp
B D               Elephant 7bp
       Cape elephant shrew 7bp
B D                Manatee 7bp
          Cape golden mole 7bp
B D                 Tenrec 7bp
                  Aardvark 8bp

Alignment block 38 of 341 in window, 30844517 - 30844544, 28 bps 
B D                   Human  agc--------ttggacac-ctggggc-------------------------------agg----atatt
B D                   Chimp  agc--------ttggacac-ctggggc-------------------------------agg----atatt
B D                 Gorilla  agc--------ttggacac-ctggggc-------------------------------agg----atatt
B D               Orangutan  agc--------ttggacac-ccggggc-------------------------------agg----atatt
B D                  Gibbon  agc--------ttggacac-ctggggc-------------------------------agg----atatt
B D                  Rhesus  agc--------tgggacac-ctggggc-------------------------------agg----atatt
B D     Crab-eating macaque  agc--------tgggacac-ctggggc-------------------------------agg----atatt
B D                  Baboon  agc--------tgggacac-ctggggc-------------------------------agg----atatt
B D            Green monkey  agc--------tgggacac-ctggggc-------------------------------agg----atatt
B D                Marmoset  agc---------ggggcac-ctggggc-------------------------------agg----atatt
B D         Squirrel monkey  agc---------ggggcac-ctggggc-------------------------------agg----gcatt
B D                Bushbaby  agt--------tgcgattc-ccctggt-------------------------------ggg----atatt
         Chinese tree shrew  act--------tgggacac-cgcaggc-------------------------------aggcggaaggct
B D                Squirrel  agg--------tgggaccctggggagc-------------------------------agg----atatt
               Prairie vole  agt--------tgggaact---gaggc-------------------------------agg----acact
B D         Chinese hamster  act--------tgggaact---gaggc-------------------------------agg----gcact
             Golden hamster  act--------tgggaact---gatgg-------------------------------agg----ac---
B D                     Rat  accatctgtaatgggatct---gatgccctcttctggcacacaagtgtacatgcagataga----gcgct
B D          Naked mole-rat  ---acc-----tgggatcc----gggc-------------------------------agg----acgtg
                 Chinchilla  ---gcct----tgggaccc----aggc-------------------------------ggg----acctg
B D                    Pika  agt--------tgggaccc-tgcaggc-------------------------------aga----acctt
B D                   Horse  agc--------tgggaccc-tcgggac-------------------------------tgg----acgtg
B D        White rhinoceros  agc--------tgggaccc-taggggc-------------------------------agg----acaat
            Star-nosed mole  agc--------tggaatcc-t----gc-------------------------------agt----aggcc
B D                Elephant  --------cactgagaccc-tcagggc-------------------------------aat----acact
        Cape elephant shrew  --------cactgggaccc-ttagagc-------------------------------agc----gcact
B D                 Manatee  --------cactgagaccc-tcagagc-------------------------------aag----acact
           Cape golden mole  --------cacagggacat-tgtgggc-------------------------------agg----acact
B D                  Tenrec  --------caca-----------gacc-------------------------------aga----gcacc
                   Aardvark  --------cactgggaccc-ttagggc-------------------------------agg----acact
B D                   Shrew  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
B D                Hedgehog  ======================================================================
          Brush-tailed rat  ======================================================================
B D                   Mouse  ======================================================================
          Black flying-fox  ======================================================================
              Weddell seal  ======================================================================
              Killer whale  ======================================================================
B D                   Panda  ======================================================================
             Big brown bat  ======================================================================
B D                     Cow  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
B D                     Dog  ======================================================================
B D                 Ferret   ======================================================================
B D                     Cat  ======================================================================
            Pacific walrus  ======================================================================
B D                 Dolphin  ======================================================================
B D                  Rabbit  ======================================================================
            Bactrian camel  ======================================================================
B D                 Megabat  ======================================================================
B D                     Pig  ======================================================================
B D                  Alpaca  ======================================================================

                      Human  ca
                      Chimp  ca
                    Gorilla  ca
                  Orangutan  ca
                     Gibbon  ca
                     Rhesus  ca
        Crab-eating macaque  ca
                     Baboon  ca
               Green monkey  ca
                   Marmoset  ta
            Squirrel monkey  ca
                   Bushbaby  ca
         Chinese tree shrew  ca
                   Squirrel  ca
               Prairie vole  cg
            Chinese hamster  ca
             Golden hamster  --
                        Rat  ca
             Naked mole-rat  cc
                 Chinchilla  cc
                       Pika  ct
                      Horse  cg
           White rhinoceros  ca
            Star-nosed mole  cc
                   Elephant  ca
        Cape elephant shrew  ca
                    Manatee  ca
           Cape golden mole  ga
                     Tenrec  gg
                   Aardvark  ca
                      Shrew  ==
     Lesser Egyptian jerboa  ==
                   Hedgehog  ==
           Brush-tailed rat  ==
                      Mouse  ==
           Black flying-fox  ==
               Weddell seal  ==
               Killer whale  ==
                      Panda  ==
              Big brown bat  ==
                        Cow  ==
              Domestic goat  ==
                      Sheep  ==
           Tibetan antelope  ==
                        Dog  ==
                    Ferret   ==
                        Cat  ==
             Pacific walrus  ==
                    Dolphin  ==
                     Rabbit  ==
             Bactrian camel  ==
                    Megabat  ==
                        Pig  ==
                     Alpaca  ==

Inserts between block 38 and 39 in window
B D                    Rat 76bp

Alignment block 39 of 341 in window, 30844545 - 30844550, 6 bps 
B D                   Human  gt------agtc
B D                   Chimp  gt------agtc
B D                 Gorilla  gt------agtt
B D               Orangutan  gt------agtt
B D                  Gibbon  gt------agtc
B D                  Rhesus  gt------agtc
B D     Crab-eating macaque  gt------agtc
B D                  Baboon  gt------agtc
B D            Green monkey  gt------agtc
B D                Marmoset  gt------aatc
B D         Squirrel monkey  gt------agtc
B D                Bushbaby  ga------ggtc
         Chinese tree shrew  gg------tgt-
B D                Squirrel  ga------gatc
               Prairie vole  gg------agt-
B D         Chinese hamster  ga------gctc
B D                   Mouse  aa------actg
B D                     Rat  aa------actc
B D          Naked mole-rat  -----------c
                 Chinchilla  -----------g
B D                    Pika  ---------ctt
B D                   Horse  ga------gatc
B D        White rhinoceros  ga------ggtc
            Star-nosed mole  aa------g-cc
B D                Elephant  ga------ggtc
        Cape elephant shrew  ga------ggtc
B D                 Manatee  ga------ggcc
           Cape golden mole  ga------ggtc
B D                  Tenrec  agcccgccagtg
                   Aardvark  ca------ggtc
B D                   Shrew  ============
    Lesser Egyptian jerboa  ============
B D                Hedgehog  ============
          Brush-tailed rat  ============
            Golden hamster  ------------
          Black flying-fox  ============
              Weddell seal  ============
              Killer whale  ============
B D                   Panda  ============
             Big brown bat  ============
B D                     Cow  ============
             Domestic goat  ============
B D                   Sheep  ============
          Tibetan antelope  ============
B D                     Dog  ============
B D                 Ferret   ============
B D                     Cat  ============
            Pacific walrus  ============
B D                 Dolphin  ============
B D                  Rabbit  ============
            Bactrian camel  ============
B D                 Megabat  ============
B D                     Pig  ============
B D                  Alpaca  ============

Inserts between block 39 and 40 in window
B D               Squirrel 2bp
B D                  Mouse 2bp
B D                    Rat 2bp
B D         Naked mole-rat 2bp
                Chinchilla 2bp
B D                   Pika 5154bp

Alignment block 40 of 341 in window, 30844551 - 30844671, 121 bps 
B D                   Human  ggcc--tggggacctcc-aaagatg--ctttcccattccttagc--c----tgtcagccttgg-taggga
B D                   Chimp  ggcc--tggggacctcc-aaagatg--ctttcccattccttagc--c----tgtcagccttgg-taggga
B D                 Gorilla  ggcc--tggggacctcc-aaagatg--ctttcccattccttagc--c----tgtcagccttgg-taggga
B D               Orangutan  agcc--tggggacctcc-aaagatg--ctttccctttccttagc--c----tgtcagccttgg-tgggga
B D                  Gibbon  aacc--t-ggaacctcc-aaagatg--ccttcccattccttagc--c----tgtcagccttgg-tgggga
B D                  Rhesus  agcc--tggggacctcc-aaagatg--ctttcccattctttagc--c----tgtcagccttgg-tgggga
B D     Crab-eating macaque  agcc--tggggacctcc-aaagatg--ctttcccattctttagc--c----tgtcagccttgg-tgggga
B D                  Baboon  agcc--tggggacctcc-gaagatg--ctttcccattctttagc--c----tgtcagccttgg-tgggga
B D            Green monkey  agcc--tggggacctcc-aaagatg--ctttcccattctttagc--c----tgtcagccttgg-tgggga
B D                Marmoset  agac--tggggacctcc-aaagatg--ctttcccatcccttagc--c----tgtcagccttgg-tgggga
B D         Squirrel monkey  agcc--tggggagctcc-aaagatg--ctttcccatcccttagc--c----tgtcagccttgg-tggaga
B D                Bushbaby  tgcc--ttagggccttg-ggagttg--ctttcccatcccttagc--c----tcttagcctttg-tgggaa
         Chinese tree shrew  --gc--tcgagggcacc-agaggta--acttccctttccttacc--c----tc-----------------
B D                Squirrel  cact--ccaggg----------gtg--ctttcccatt------g--c----ttt----------------
               Prairie vole  ---c--cgaggaccttc-ttg-gtg--atttctagtccttca-cctc----tctcagc-tgag-cagg--
B D         Chinese hamster  --cc--caagggccttc-gtg-gtg--atttctagtccctca-c--c----tcttagt-cgag-cagg--
             Golden hamster  ------------------------g--atttcaagtccctca-c--c----tctcggc-agag-caga--
B D                   Mouse  tgcc--ccagggccttc-ttt-gtg--atttcttgtc------c--c----tctcagc-tgag-caggga
B D                     Rat  tgcc--cctgggccttc-gtg-gtg--atttcttgtttctca-c--c----tctcagc-taag-caggga
B D          Naked mole-rat  ggcc--cct-------------agg--gtctcggcgtcggtt-c--cagg-cctcagc-cggg-cggag-
                 Chinchilla  gcca--cctgggggtgt-gtggggg--gcccccgccccgtga-c--caggccctcagc---gg-caaag-
B D                   Horse  tgtc--caagggcctcc-agagatg--ccctcccattcctcggt--c----tctcagccttcattgggga
B D        White rhinoceros  tgcc--caagggccgcc-agagatg--cgctcccattcctcagt--c----tctcagctttggttgggga
            Star-nosed mole  tgccagaaatgttctcc-tgagaca--tcctcctcgtgctcagt--c-----ctcagccttgattgggga
B D                Elephant  tgcc--caagggcttcccatagaca--ttctcccattcctcgac--c----tctcagctttggttgggga
        Cape elephant shrew  tgac--caagggtttctgggagatc--ctctcttatt--------------tctcatctttggtt-atga
B D                 Manatee  tgcc--ttaggtcctgtgggagaca--ctctcccatt--------------cctcagccttggttgggga
           Cape golden mole  tgct--caaggaactctgggatgtcgacactcccattgctcagt--c----tctcagccttgtctgggga
B D                  Tenrec  ttcc--caatggcctctgggagccc--cgctttcatgcctcag--------cctcaacccagtcgagg--
                   Aardvark  tatc--tgagggcctccaggagaca----cttcctttccttagc--t----tctcaaccttggttgagga
B D                   Shrew  ======================================================================
    Lesser Egyptian jerboa  ======================================================================
B D                Hedgehog  ======================================================================
          Brush-tailed rat  ======================================================================
B D                    Pika  ======================================================================
          Black flying-fox  ======================================================================
              Weddell seal  ======================================================================
              Killer whale  ======================================================================
B D                   Panda  ======================================================================
             Big brown bat  ======================================================================
B D                     Cow  ======================================================================
             Domestic goat  ======================================================================
B D                   Sheep  ======================================================================
          Tibetan antelope  ======================================================================
B D                     Dog  ======================================================================
B D                 Ferret   ======================================================================
B D                     Cat  ======================================================================
            Pacific walrus  ======================================================================
B D                 Dolphin  ======================================================================
B D                  Rabbit  ======================================================================
            Bactrian camel  ======================================================================
B D                 Megabat  ======================================================================
B D                     Pig  ======================================================================
B D                  Alpaca  ======================================================================

                      Human  catcac--------tttcct-ccttatccttcaatgaggacattcaag-acaac--atccctgagctgga
                      Chimp  catcac--------tttcct-ccttatccttcaatgaggagattcaag-acaac--atccctgagctgga
                    Gorilla  catcac--------tttcct-ccttatccttcagtgaggagattcaag-acaac--atccctgagctgga
                  Orangutan  catcac--------tttcct-ccttatccttcaatggggagattcaag-acaac--atccctgagctgga
                     Gibbon  catcac--------tttcct-ccttatccttcaatggggagattcaag-acaac--atccctgagttgga
                     Rhesus  catcac--------tttcct-cctcattcgtcaatggggagattcaag-acaac--atccctgagctgaa
        Crab-eating macaque  catcac--------tttcct-cctcattcgtcaatggggagattcaag-acaac--atccctgagctgaa
                     Baboon  catcac--------tttcct-ccttatccgtcaatggggagattcaag-acagc--atccctgagctgaa
               Green monkey  catcac--------tttcct-ccttatccgtcaatggggagattcaag-acaac--atccctgagctgaa
                   Marmoset  catcac--------tttctt-ccttattcttcaatggggagattcaag-acaac--atccctgagctgta
            Squirrel monkey  catcac--------tgtcct-ccttatccttcaacggggacattccag-acaac--atccctgagccgta
                   Bushbaby  catcac--------ttctct-ccttacccttcaagggagagattcaggaacaacctatctctaagcccga
         Chinese tree shrew  --tcac--------tttctt-acttattctccaacggagagactcagg-aacac--acccctgagcccaa
                   Squirrel  gcccat--------tgttctgccttatccttcaggggagaggttcaggaagaa-----------------
               Prairie vole  catcag--------tgcgtt-ccacatcctttcaggtagagattacaggacagc--agtccccagtccgc
            Chinese hamster  cgccaa--------tgtgct-ccgtatccttcaaagtagtgattctaggacagc--attacccagaccaa
             Golden hamster  caccaa--------cgtgct-ctgtgtctctcaaagcagtga-ccaaggacagc--atcacccaggccaa
                      Mouse  ctctaa--------tgtcct-ccttatccttcaaggttaaaattcaaggacagc--agcacccaggccaa
                        Rat  ctctca--------tgttct-ccttatccttcaaggatagca-------gcacc--agcacccaggccg-
             Naked mole-rat  ccacca--------cttcgt-cctcaccctgcgaggggaaggctg-------------------------
                 Chinchilla  ccctcc--------ctttct-tc-catcctcc----------ctg-------------------------
                      Horse  catcat--------tttcct-cgttatccttcaatggagagattcaggagcaac--atcctggagcccaa
           White rhinoceros  catcac--------tttcct-ccttatccttcaatggagagattcaggagcaac--atcgtggagaccaa
            Star-nosed mole  tgtcac--------cttccc-ccttgcttttc--tggagacattcagg---aac--atcccgaaaccaaa
                   Elephant  tgttgc--------tttttc-ccttgtcctccaatgacgggattcaggagcaac--atctctgagcccaa
        Cape elephant shrew  tgttg---------gttttc-tcttgccttccagtga---aattcagtagcaac--atctctgagcctaa
                    Manatee  tgttgc--------tttttt-ccttctcctccaatgaagtaa--caggagcaac--attcctgagcccaa
           Cape golden mole  tgttgc-------ttttttt-ccttgtcccccaatgaagagattcaggagcaac--atccctgagcccaa
                     Tenrec  ---tgc-----aattctttt-ccttgtcattcagtgaagaaattcaggagcaac--at-cctgctctcca
                   Aardvark  tgttgctttttttttttttt-ccttgtcctccaatgaagagatccaggagcaac--atccttgagaccaa
                      Shrew  ======================================================================
     Lesser Egyptian jerboa  ======================================================================
                   Hedgehog  ======================================================================
           Brush-tailed rat  ======================================================================
                       Pika  ======================================================================
           Black flying-fox  ======================================================================
               Weddell seal  ======================================================================
               Killer whale  ======================================================================
                      Panda  ======================================================================
              Big brown bat  ======================================================================
                        Cow  ======================================================================
              Domestic goat  ======================================================================
                      Sheep  ======================================================================
           Tibetan antelope  ======================================================================
                        Dog  ======================================================================
                    Ferret   ======================================================================
                        Cat  ======================================================================
             Pacific walrus  ======================================================================
                    Dolphin  ======================================================================
                     Rabbit  ======================================================================
             Bactrian camel  ======================================================================
                    Megabat  ======================================================================
                        Pig  ======================================================================
                     Alpaca  ======================================================================

                      Human  ggaaa
                      Chimp  ggaaa
                    Gorilla  ggaaa
                  Orangutan  ggaaa
                     Gibbon  ggaaa
                     Rhesus  ggaag
        Crab-eating macaque  ggaag
                     Baboon  ggagg
               Green monkey  ggaag
                   Marmoset  ggaag
            Squirrel monkey  ggaag
                   Bushbaby  agaaa
         Chinese tree shrew  ggag-
                   Squirrel  -----
               Prairie vole  tga--
            Chinese hamster  ggaac
             Golden hamster  ggaaa
                      Mouse  gga--
                        Rat  -----
             Naked mole-rat  -----
                 Chinchilla  -----
                      Horse  ggaac
           White rhinoceros  ggaac
            Star-nosed mole  agaag
                   Elephant  gaaac
        Cape elephant shrew  ggagc
                    Manatee  gaagc
           Cape golden mole  gaaga
                     Tenrec  gaagc
                   Aardvark  gaagc
                      Shrew  =====
     Lesser Egyptian jerboa  =====
                   Hedgehog  =====
           Brush-tailed rat  =====
                       Pika  =====
           Black flying-fox  =====
               Weddell seal  =====
               Killer whale  =====
                      Panda  =====
              Big brown bat  =====
                        Cow  =====
              Domestic goat  =====
                      Sheep  =====
           Tibetan antelope  =====
                        Dog  =====
                    Ferret   =====
                        Cat  =====
             Pacific walrus  =====
                    Dolphin  =====
                     Rabbit  =====
             Bactrian camel  =====
                    Megabat  =====
                        Pig  =====
                     Alpaca  =====

Inserts between block 40 and 41 in window
B D        Chinese hamster 42bp
            Golden hamster 42bp

Alignment block 41 of 341 in window, 30844672 - 30844673, 2 bps 
B D                   Human  cc
B D                   Chimp  cc
B D                 Gorilla  cc
B D               Orangutan  cc
B D                  Gibbon  cc
B D                  Rhesus  cg
B D     Crab-eating macaque  cg
B D                  Baboon  cg
B D            Green monkey  cc
B D                Marmoset  cc
B D         Squirrel monkey  cc
B D                Bushbaby  cc
B D                   Horse  cc
B D        White rhinoceros  cc
            Star-nosed mole  cc
B D                Elephant  cc
        Cape elephant shrew  ct
B D                 Manatee  cc
           Cape golden mole  tc
B D                  Tenrec  ct
                   Aardvark  cc
B D                   Shrew  ==
    Lesser Egyptian jerboa  ==
B D                Hedgehog  ==
          Brush-tailed rat  ==
                Chinchilla  --
              Prairie vole  --
B D         Chinese hamster  ==
B D                   Mouse  --
            Golden hamster  ==
B D                    Pika  ==
B D                     Rat  --
          Black flying-fox  ==
              Weddell seal  ==
              Killer whale  ==
B D                   Panda  ==
             Big brown bat  ==
B D                     Cow  ==
             Domestic goat  ==
B D                   Sheep  ==
          Tibetan antelope  ==
B D                Squirrel  --
        Chinese tree shrew  --
B D                     Dog  ==
B D                 Ferret   ==
B D                     Cat  ==
            Pacific walrus  ==
B D                 Dolphin  ==
B D          Naked mole-rat  --
B D                  Rabbit  ==
            Bactrian camel  ==
B D                 Megabat  ==
B D                     Pig  ==
B D                  Alpaca  ==

Alignment block 42 of 341 in window, 30844674 - 30844690, 17 bps 
B D                   Human  cagcctcacctcc--tcct
B D                   Chimp  cagcctcacctcc--tcct
B D                 Gorilla  cagcctcacctcc--tcct
B D               Orangutan  cagcctcacctcc--tcct
B D                  Gibbon  cagcctcacctcc--tcct
B D                  Rhesus  cagcctcacctcc--tcct
B D     Crab-eating macaque  cagcctcacctcc--tcct
B D                  Baboon  cagcctcacctcc--tgct
B D            Green monkey  cagcctcaccacc--tcct
B D                Marmoset  cagcctcacctcc--tcct
B D         Squirrel monkey  cagcctcacctcc--tcct
B D                Bushbaby  tagcctcactgccagctcc
         Chinese tree shrew  -----------cc--ctcc
B D                Squirrel  ----tgtcacttg--ccca
B D                   Mouse  ---------------ccca
B D                     Rat  ------------------g
B D          Naked mole-rat  ----------ccc--cccg
                 Chinchilla  ----------ctc--ccca
B D                  Rabbit  cagccacagcttc--ttca
B D                   Horse  cagcctcacct--------
B D        White rhinoceros  caagctcacctcc--tcct
            Star-nosed mole  caa-ctcacctgt--tcct
B D                Elephant  caatttcgcctcc--tact
        Cape elephant shrew  tga----------------
B D                 Manatee  caatctcacctcc--tact
           Cape golden mole  caatctcatctcc--tact
B D                  Tenrec  caagatc-cagcc--tccg
                   Aardvark  caacctcacctcc--tact
B D                   Shrew  ===================
    Lesser Egyptian jerboa  ===================
B D                Hedgehog  ===================
          Brush-tailed rat  ===================
              Prairie vole  -------------------
B D         Chinese hamster  ===================
            Golden hamster  ===================
B D                    Pika  ===================
          Black flying-fox  ===================
              Weddell seal  ===================
              Killer whale  ===================
B D                   Panda  ===================
             Big brown bat  ===================
B D                     Cow  ===================
             Domestic goat  ===================
B D                   Sheep  ===================
          Tibetan antelope  ===================
B D                     Dog  ===================
B D                 Ferret   ===================
B D                     Cat  ===================
            Pacific walrus  ===================
B D                 Dolphin  ===================
            Bactrian camel  ===================
B D                 Megabat  ===================
B D                     Pig  ===================
B D                  Alpaca  ===================

Inserts between block 42 and 43 in window
B D               Squirrel 1bp
B D                  Mouse 4bp
B D                    Rat 4bp
B D         Naked mole-rat 6bp
                Chinchilla 6bp

Alignment block 43 of 341 in window, 30844691 - 30844766, 76 bps 
B D                   Human  tccacccctcatct--------------cctaagct-ccccat----cagtggtgtctggggtgtggaac
B D                   Chimp  tccacccctcatct--------------cctaagct-ccccat----cagtggtgtctggggtgtggaac
B D                 Gorilla  tccacccctcatct--------------cctaagct-ccccat----cagtggtgtctggggtgtggaac
B D               Orangutan  tccacccctcatct--------------cctaagct-ccccat----cagcagtgtctggggtatggaat
B D                  Gibbon  tccacccctcatct--------------cctaagct-ccccat----cagcggtgtctggggtatggaat
B D                  Rhesus  cccacccctcaccg--------------cctaagct-ccccat----cagaggtgtctggggtgtggaac
B D     Crab-eating macaque  cccacccctcacct--------------cctaagct-ccccat----cagaggtgtctggggtgtggaac
B D                  Baboon  cccacccctcgtct--------------cctaagct-ccccat----cagaggtgtccggggtgtggaac
B D            Green monkey  tccacccctcatct--------------cctaagct-ccccat----cagaggtgtctggggtgtggaac
B D                Marmoset  tccacccctcatct--------------cctaagct-ccccat----cggcggtgtctggggtgtggaac
B D         Squirrel monkey  tcca-cctttatct--------------cctaagct-ccccat----cggcagtgtctggggtgtggaac
B D                Bushbaby  tctacccctcatct--------------cggcag-----------------------tgggatgcgggac
         Chinese tree shrew  tcctcccctcatct--------------tcagtgct-ttccag----cagcagcacctggggtgtgg---
B D                Squirrel  ---------------------------------------------------gttaccccaag--------
               Prairie vole  -------------------------------gagctcc--------------gtgtctgatg--------
B D         Chinese hamster  -cccatctctgtcc--------------cctgagcggcagtgt----ctggggtgcctgatg--------
             Golden hamster  -cccgtctctgtcc--------------cctgagctgctgtgt----ctggggtgcccgatg--------
B D                   Mouse  ---------tgtcc--------------cctgagcagccctat----ctggggtgtctgatg--------
B D                     Rat  ---------tatcc--------------cctgagctgcccctt----ctggggtatctgatg--------