GIS RNA PET Downloadable Files
  RNA Sub-cellular Localization by Paired-end diTag Sequencing from ENCODE/GIS   (Track settings)
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 294 files Cell Line Localization RNA
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A549cellLong PolyA+ RNAclone-free3FastqRd1087WCRHA009wgEncodeEH002929GSM1006902Illumina HiSeq 20002.6 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6412; md5sum=02cabf541367a3cbdae1927d3c8101ad;
A549cellLong PolyA+ RNAclone-free3FastqRd2087WCRHA009wgEncodeEH002929GSM1006902Illumina HiSeq 20002.5 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6412; md5sum=52a67c9c28603bb079bbed2bb28e5d7f;
A549cellLong PolyA+ RNAclone-free3Minus Raw signal087WCRHA009wgEncodeEH002929GSM1006902Illumina HiSeq 2000 24 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6412; tableName=wgEncodeGisRnaPetA549CellPapMinusRawRep3; md5sum=4cc175aa25b9f9bc6214e91599610b04;
A549cellLong PolyA+ RNAclone-free3Plus Raw signal087WCRHA009wgEncodeEH002929GSM1006902Illumina HiSeq 2000 25 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6412; tableName=wgEncodeGisRnaPetA549CellPapPlusRawRep3; md5sum=57630f684575ffaaba6e549a299077c8;
A549cellLong PolyA+ RNAclone-free4FastqRd1088WCRHA010wgEncodeEH002929GSM1006902Illumina HiSeq 20002.5 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6414; md5sum=03f5501cc9a9dddc658cc943ba1160c5;
A549cellLong PolyA+ RNAclone-free4FastqRd2088WCRHA010wgEncodeEH002929GSM1006902Illumina HiSeq 20002.4 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6414; md5sum=e8e6248f4cdd00f7f8b9aa664fe00b30;
A549cellLong PolyA+ RNAclone-free4Minus Raw signal088WCRHA010wgEncodeEH002929GSM1006902Illumina HiSeq 2000 21 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6414; tableName=wgEncodeGisRnaPetA549CellPapMinusRawRep4; md5sum=0dc46f2227d8b2e0cefc3794f21a76bf;
A549cellLong PolyA+ RNAclone-free4Plus Raw signal088WCRHA010wgEncodeEH002929GSM1006902Illumina HiSeq 2000 21 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6414; tableName=wgEncodeGisRnaPetA549CellPapPlusRawRep4; md5sum=c309d71f61b496b4907c485e10b2443c;
A549cellLong PolyA+ RNAclone-free  Clusters087WC,088WCRHA009,RHA010wgEncodeEH002929GSM1006902Illumina HiSeq 20005.2 MBbedCluster2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-06-29; subId=7271; tableName=wgEncodeGisRnaPetA549CellPapClusters; md5sum=5389c1c4d1cad7da294fd38074dbd4c4;
A549cellLong PolyA+ RNAclone-free3Alignments087WCRHA009wgEncodeEH002929  Illumina HiSeq 20005.2 MBbam.bai2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6412; tableName=wgEncodeGisRnaPetA549CellPapAlnRep3; md5sum=2dadb34a602e1d6b59d7459bf6696a99;
A549cellLong PolyA+ RNAclone-free3Alignments087WCRHA009wgEncodeEH002929  Illumina HiSeq 20003.3 GBbam2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6412; tableName=wgEncodeGisRnaPetA549CellPapAlnRep3; md5sum=01cecc1be0758fb805ccaf24218b36db;
A549cellLong PolyA+ RNAclone-free4Alignments088WCRHA010wgEncodeEH002929  Illumina HiSeq 20004.6 MBbam.bai2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6414; tableName=wgEncodeGisRnaPetA549CellPapAlnRep4; md5sum=e6c786835662438f67f5203fa436a146;
A549cellLong PolyA+ RNAclone-free4Alignments088WCRHA010wgEncodeEH002929  Illumina HiSeq 20003.0 GBbam2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6414; tableName=wgEncodeGisRnaPetA549CellPapAlnRep4; md5sum=ef6bcf7408b4521936b77b4b5a55c96f;
A549cytosolLong PolyA+ RNAclone-free3Alignments087CRHA011wgEncodeEH002927  Illumina HiSeq 20004.8 MBbam.bai2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6409; tableName=wgEncodeGisRnaPetA549CytosolPapAlnRep3; md5sum=7b5e02d4e14c05d2394395707e6bd518;
A549cytosolLong PolyA+ RNAclone-free3Alignments087CRHA011wgEncodeEH002927  Illumina HiSeq 20003.2 GBbam2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6409; tableName=wgEncodeGisRnaPetA549CytosolPapAlnRep3; md5sum=b07798aeb4399b24706b853c28b2fc89;
A549cytosolLong PolyA+ RNAclone-free3FastqRd1087CRHA011wgEncodeEH002927GSM1006909Illumina HiSeq 20002.6 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6409; md5sum=43672868c4d6958ad2e4d0f763c2c3be;
A549cytosolLong PolyA+ RNAclone-free3FastqRd2087CRHA011wgEncodeEH002927GSM1006909Illumina HiSeq 20002.5 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6409; md5sum=1178867a0ccf9cb64603b518fa52dafd;
A549cytosolLong PolyA+ RNAclone-free3Minus Raw signal087CRHA011wgEncodeEH002927GSM1006909Illumina HiSeq 2000 21 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6409; tableName=wgEncodeGisRnaPetA549CytosolPapMinusRawRep3; md5sum=cde3550b00463fe64a5a382fea9857cb;
A549cytosolLong PolyA+ RNAclone-free3Plus Raw signal087CRHA011wgEncodeEH002927GSM1006909Illumina HiSeq 2000 21 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6409; tableName=wgEncodeGisRnaPetA549CytosolPapPlusRawRep3; md5sum=29a7cde0305d472d06dbb201b6b0f1b1;
A549cytosolLong PolyA+ RNAclone-free4FastqRd1088CRHA012wgEncodeEH002927GSM1006909Illumina HiSeq 20004.1 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6404; md5sum=5f6ca7d7a305acdd7872bf4d2b39ae55;
A549cytosolLong PolyA+ RNAclone-free4FastqRd2088CRHA012wgEncodeEH002927GSM1006909Illumina HiSeq 20003.8 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6404; md5sum=7ad2176ef0ee561f7bad61b027d9f0a3;
A549cytosolLong PolyA+ RNAclone-free4Minus Raw signal088CRHA012wgEncodeEH002927GSM1006909Illumina HiSeq 2000 24 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6404; tableName=wgEncodeGisRnaPetA549CytosolPapMinusRawRep4; md5sum=3016b0fbd14d7dc4a565f98ffc7e5dbc;
A549cytosolLong PolyA+ RNAclone-free4Plus Raw signal088CRHA012wgEncodeEH002927GSM1006909Illumina HiSeq 2000 24 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6404; tableName=wgEncodeGisRnaPetA549CytosolPapPlusRawRep4; md5sum=2f8059b8fb75b33d0f3c33cec605bf5b;
A549cytosolLong PolyA+ RNAclone-free  Clusters087C,088CRHA011,RHA012wgEncodeEH002927GSM1006909Illumina HiSeq 20004.9 MBbedCluster2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-06-29; subId=7274; tableName=wgEncodeGisRnaPetA549CytosolPapClusters; md5sum=b917affee7662ad988b67af280d33aeb;
A549cytosolLong PolyA+ RNAclone-free4Alignments088CRHA012wgEncodeEH002927  Illumina HiSeq 20005.1 MBbam.bai2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6404; tableName=wgEncodeGisRnaPetA549CytosolPapAlnRep4; md5sum=484a6d7652d69247a04f50b0748ecc9e;
A549cytosolLong PolyA+ RNAclone-free4Alignments088CRHA012wgEncodeEH002927  Illumina HiSeq 20005.0 GBbam2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6404; tableName=wgEncodeGisRnaPetA549CytosolPapAlnRep4; md5sum=c99dffdc175998518a08a3c8ec3e3831;
A549nucleusLong PolyA+ RNAclone-free3Alignments087NRHA013wgEncodeEH002928  Illumina HiSeq 20005.0 MBbam.bai2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6405; tableName=wgEncodeGisRnaPetA549NucleusPapAlnRep3; md5sum=9071f6b836d3472fc5cd2f191c26ae31;
A549nucleusLong PolyA+ RNAclone-free3Alignments087NRHA013wgEncodeEH002928  Illumina HiSeq 20003.1 GBbam2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6405; tableName=wgEncodeGisRnaPetA549NucleusPapAlnRep3; md5sum=ad1a4828fd993d8085614132a6b754a5;
A549nucleusLong PolyA+ RNAclone-free3FastqRd1087NRHA013wgEncodeEH002928GSM1006903Illumina HiSeq 20002.5 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6405; md5sum=92558cdcf454cdeea5b009d91f07d8a2;
A549nucleusLong PolyA+ RNAclone-free3FastqRd2087NRHA013wgEncodeEH002928GSM1006903Illumina HiSeq 20002.3 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6405; md5sum=fc621a7dce30b184afc7832f8ab316e1;
A549nucleusLong PolyA+ RNAclone-free3Minus Raw signal087NRHA013wgEncodeEH002928GSM1006903Illumina HiSeq 2000 20 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6405; tableName=wgEncodeGisRnaPetA549NucleusPapMinusRawRep3; md5sum=22513fce1cbd14131a70526fb037bc6a;
A549nucleusLong PolyA+ RNAclone-free3Plus Raw signal087NRHA013wgEncodeEH002928GSM1006903Illumina HiSeq 2000 20 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6405; tableName=wgEncodeGisRnaPetA549NucleusPapPlusRawRep3; md5sum=2266fed91fa7e54459bb5cdd44024233;
A549nucleusLong PolyA+ RNAclone-free4FastqRd1088NRHA014wgEncodeEH002928GSM1006903Illumina HiSeq 20002.6 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6408; md5sum=0fa1fd8a7c194b410d1784f4fb20f18a;
A549nucleusLong PolyA+ RNAclone-free4FastqRd2088NRHA014wgEncodeEH002928GSM1006903Illumina HiSeq 20002.5 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6408; md5sum=812307dda46c44681502850f9dc520c1;
A549nucleusLong PolyA+ RNAclone-free4Minus Raw signal088NRHA014wgEncodeEH002928GSM1006903Illumina HiSeq 2000 22 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6408; tableName=wgEncodeGisRnaPetA549NucleusPapMinusRawRep4; md5sum=570c86a891c89eb744e8f0bae13461f4;
A549nucleusLong PolyA+ RNAclone-free4Plus Raw signal088NRHA014wgEncodeEH002928GSM1006903Illumina HiSeq 2000 22 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6408; tableName=wgEncodeGisRnaPetA549NucleusPapPlusRawRep4; md5sum=44e45648287353e37b422347ec74e970;
A549nucleusLong PolyA+ RNAclone-free  Clusters087N,088NRHA013,RHA014wgEncodeEH002928GSM1006903Illumina HiSeq 20004.4 MBbedCluster2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-06-29; subId=7266; tableName=wgEncodeGisRnaPetA549NucleusPapClusters; md5sum=d0c43f00cb45cbeb8bd891621af892ff;
A549nucleusLong PolyA+ RNAclone-free4Alignments088NRHA014wgEncodeEH002928  Illumina HiSeq 20004.7 MBbam.bai2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6408; tableName=wgEncodeGisRnaPetA549NucleusPapAlnRep4; md5sum=a28c09b604568bd3e53072f8d1f54bab;
A549nucleusLong PolyA+ RNAclone-free4Alignments088NRHA014wgEncodeEH002928  Illumina HiSeq 20003.2 GBbam2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6408; tableName=wgEncodeGisRnaPetA549NucleusPapAlnRep4; md5sum=56eea9bedd4cae6c745680db799f0543;
GM12878cytosolLong PolyA+ RNAclone-based1Alignmentsgen0105CDHG001wgEncodeEH000248  Illumina Genome Analyzer II5.4 MBbam.bai2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-22; subId=1979; tableName=wgEncodeGisRnaPetGm12878CytosolPapAlnRep1; md5sum=b1e134a1fb04a188782052ed4de80394;
GM12878cytosolLong PolyA+ RNAclone-based1Alignmentsgen0105CDHG001wgEncodeEH000248  Illumina Genome Analyzer II246 MBbam2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-22; subId=1979; tableName=wgEncodeGisRnaPetGm12878CytosolPapAlnRep1; md5sum=02bef90485e98b5397a70af77f3fa245;
GM12878cytosolLong PolyA+ RNAclone-based1Clustersgen0105CDHG001wgEncodeEH000248  Illumina Genome Analyzer II593 KBbed2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-03-08; subId=1979; tableName=wgEncodeGisRnaPetGm12878CytosolPapClustersRep1; md5sum=d6aca3475c5cb1c7b4e8a9ac6d1026ed;
GM12878cytosolLong PolyA+ RNAclone-based1FastqRd1gen0105CDHG001wgEncodeEH000248  Illumina Genome Analyzer II1.2 GBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-17; subId=778; md5sum=71652744741071a5964d03e30149243b;
GM12878cytosolLong PolyA+ RNAclone-based1FastqRd2gen0105CDHG001wgEncodeEH000248  Illumina Genome Analyzer II1.2 GBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-17; subId=778; md5sum=84d5e9d31ed8eed12a827c9cc3f6982c;
GM12878cytosolLong PolyA+ RNAclone-based1Minus Raw signalgen0105CDHG001wgEncodeEH000248  Illumina Genome Analyzer II 57 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-22; subId=1979; tableName=wgEncodeGisRnaPetGm12878CytosolPapMinusRawSigRep1; md5sum=d11593267f573d8b2ef5879719005872;
GM12878cytosolLong PolyA+ RNAclone-based1Plus Raw signalgen0105CDHG001wgEncodeEH000248  Illumina Genome Analyzer II 58 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-22; subId=1979; tableName=wgEncodeGisRnaPetGm12878CytosolPapPlusRawSigRep1; md5sum=711a4823129f2b4fa3c470387dfc537d;
GM12878cytosolLong PolyA+ RNAclone-free1Alignmentsgen0107CIHG024wgEncodeEH000248  Illumina Genome Analyzer II4.1 MBbam.bai2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2010-07-22; subId=5098; tableName=wgEncodeGisRnaPetGm12878CytosolPapAlnRep1V2; md5sum=798daa5f9e1db8fe485ef3c4290a46c6;
GM12878cytosolLong PolyA+ RNAclone-free1Alignmentsgen0107CIHG024wgEncodeEH000248  Illumina Genome Analyzer II1.7 GBbam2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2010-07-22; subId=5098; tableName=wgEncodeGisRnaPetGm12878CytosolPapAlnRep1V2; md5sum=017e887899fc0f28b36cb71fe498f583;
GM12878cytosolLong PolyA+ RNAclone-free1Clustersgen0107CIHG024wgEncodeEH000248GSM830535Illumina Genome Analyzer II7.5 MBbed2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2010-03-08; subId=5098; tableName=wgEncodeGisRnaPetGm12878CytosolPapClustersRep1V2; md5sum=9c1a439d01fb082b23e026388b6718dd;
GM12878cytosolLong PolyA+ RNAclone-free1FastqRd1gen0107CIHG024wgEncodeEH000248GSM830535Illumina Genome Analyzer II1.3 GBfastq2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2009-11-17; subId=5098; md5sum=7f50a4196a6557139a5b0b39a73b9de3;
GM12878cytosolLong PolyA+ RNAclone-free1FastqRd2gen0107CIHG024wgEncodeEH000248GSM830535Illumina Genome Analyzer II1.3 GBfastq2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2009-11-17; subId=5098; md5sum=4784bfb738c10b61e34c6177e7c29adf;
GM12878cytosolLong PolyA+ RNAclone-free1Minus Raw signalgen0107CIHG024wgEncodeEH000248GSM830535Illumina Genome Analyzer II 14 MBbigWig2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2010-07-22; subId=5098; tableName=wgEncodeGisRnaPetGm12878CytosolPapMinusRawRep1V2; md5sum=2e602986507fa4a74730a2c85346b9cc;
GM12878cytosolLong PolyA+ RNAclone-free1Plus Raw signalgen0107CIHG024wgEncodeEH000248GSM830535Illumina Genome Analyzer II 14 MBbigWig2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2010-07-22; subId=5098; tableName=wgEncodeGisRnaPetGm12878CytosolPapPlusRawRep1V2; md5sum=39a6558646cee0174798cf41003ac477;
GM12878nucleusLong PolyA+ RNAclone-based1Alignmentsgen0111NDHG002wgEncodeEH000249  Illumina Genome Analyzer II5.4 MBbam.bai2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-22; subId=1980; tableName=wgEncodeGisRnaPetGm12878NucleusPapAlnRep1; md5sum=b55a759b767b658186f75b0b51756f0e;
GM12878nucleusLong PolyA+ RNAclone-based1Alignmentsgen0111NDHG002wgEncodeEH000249  Illumina Genome Analyzer II241 MBbam2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-22; subId=1980; tableName=wgEncodeGisRnaPetGm12878NucleusPapAlnRep1; md5sum=f0d5c607ffef0469a68169066d68f69e;
GM12878nucleusLong PolyA+ RNAclone-based1Clustersgen0111NDHG002wgEncodeEH000249GSM830534Illumina Genome Analyzer II2.2 MBbed2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-03-08; subId=1980; tableName=wgEncodeGisRnaPetGm12878NucleusPapClustersRep1; md5sum=011715b1976580d3837f46b6efdd6fb1;
GM12878nucleusLong PolyA+ RNAclone-based1FastqRd1gen0111NDHG002wgEncodeEH000249GSM830534Illumina Genome Analyzer II1.1 GBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-17; subId=778; md5sum=eb7b79830c23d3d729bdc9c605f6368f;
GM12878nucleusLong PolyA+ RNAclone-based1FastqRd2gen0111NDHG002wgEncodeEH000249GSM830534Illumina Genome Analyzer II1.2 GBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-17; subId=778; md5sum=2894f464d1a7646ffc5a27eef1b1c3dc;
GM12878nucleusLong PolyA+ RNAclone-based1Minus Raw signalgen0111NDHG002wgEncodeEH000249GSM830534Illumina Genome Analyzer II132 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-22; subId=1980; tableName=wgEncodeGisRnaPetGm12878NucleusPapMinusRawSigRep1; md5sum=fb50bcc9b26b9ff2bfb3b67f06f0be51;
GM12878nucleusLong PolyA+ RNAclone-based1Plus Raw signalgen0111NDHG002wgEncodeEH000249GSM830534Illumina Genome Analyzer II131 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-22; subId=1980; tableName=wgEncodeGisRnaPetGm12878NucleusPapPlusRawSigRep1; md5sum=89e86a431bf98d5757b90fa07cfec440;
H1-hESCcellLong PolyA+ RNAclone-free1Alignmentsgen0114WCIHE001wgEncodeEH000250  Illumina Genome Analyzer IIx4.3 MBbam.bai2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4032; tableName=wgEncodeGisRnaPetH1hescCellPapAlnRep1; md5sum=3d348f18039f31cfb375b1f9b3722e95;
H1-hESCcellLong PolyA+ RNAclone-free1Alignmentsgen0114WCIHE001wgEncodeEH000250  Illumina Genome Analyzer IIx2.1 GBbam2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4032; tableName=wgEncodeGisRnaPetH1hescCellPapAlnRep1; md5sum=416a7d6780983f69856a001ca3136998;
H1-hESCcellLong PolyA+ RNAclone-free1Clustersgen0114WCIHE001wgEncodeEH000250GSM830532Illumina Genome Analyzer IIx3.2 MBbed2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4032; tableName=wgEncodeGisRnaPetH1hescCellPapClustersRep1; md5sum=0a28028ba1f146b003881c674ed35d62;
H1-hESCcellLong PolyA+ RNAclone-free1FastqRd1gen0114WCIHE001wgEncodeEH000250GSM830532Illumina Genome Analyzer IIx1.7 GBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4032; md5sum=8f8266709db516faed3d2127780096df;
H1-hESCcellLong PolyA+ RNAclone-free1FastqRd2gen0114WCIHE001wgEncodeEH000250GSM830532Illumina Genome Analyzer IIx1.6 GBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4032; md5sum=cd82d6011ecf2e188b8f2a774508a94d;
H1-hESCcellLong PolyA+ RNAclone-free1Minus Raw signalgen0114WCIHE001wgEncodeEH000250GSM830532Illumina Genome Analyzer IIx8.5 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4032; tableName=wgEncodeGisRnaPetH1hescCellPapMinusRawRep1; md5sum=d91f35ed4314f2eeaae866531726c34f;
H1-hESCcellLong PolyA+ RNAclone-free1Plus Raw signalgen0114WCIHE001wgEncodeEH000250GSM830532Illumina Genome Analyzer IIx8.5 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4032; tableName=wgEncodeGisRnaPetH1hescCellPapPlusRawRep1; md5sum=ca0c00c6c7ee77c2d4eb69dbb6ae58ae;
HUVECcytosolLong PolyA+ RNAclone-free1Alignmentsgen0117CRHH003wgEncodeEH000266  Illumina Genome Analyzer IIx5.0 MBbam.bai2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=5099; tableName=wgEncodeGisRnaPetHuvecCytosolPapAlnRep1V2; md5sum=1293e71a5f2717bf71d5015d53fe18f0;
HUVECcytosolLong PolyA+ RNAclone-free1Alignmentsgen0117CRHH003wgEncodeEH000266  Illumina Genome Analyzer IIx4.2 GBbam2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=5099; tableName=wgEncodeGisRnaPetHuvecCytosolPapAlnRep1V2; md5sum=fd58f1ee216b20544b3cd41be7ee0ea0;
HUVECcytosolLong PolyA+ RNAclone-free1Clustersgen0117CRHH003wgEncodeEH000266GSM1006915Illumina Genome Analyzer IIx9.2 MBbed2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=5099; tableName=wgEncodeGisRnaPetHuvecCytosolPapClustersRep1V2; md5sum=3f522dc545a5c02d8ba385097fb45adc;
HUVECcytosolLong PolyA+ RNAclone-free1FastqRd1gen0117CRHH003wgEncodeEH000266GSM1006915Illumina Genome Analyzer IIx3.2 GBfastq2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=5099; md5sum=69b3970780cbfa5ac12d6c8b6a1cc0a0;
HUVECcytosolLong PolyA+ RNAclone-free1FastqRd2gen0117CRHH003wgEncodeEH000266GSM1006915Illumina Genome Analyzer IIx2.9 GBfastq2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=5099; md5sum=04d5abf878044ef7697e64d2be3354b9;
HUVECcytosolLong PolyA+ RNAclone-free1Minus Raw signalgen0117CRHH003wgEncodeEH000266GSM1006915Illumina Genome Analyzer IIx 20 MBbigWig2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=5099; tableName=wgEncodeGisRnaPetHuvecCytosolPapMinusRawRep1V2; md5sum=3be99e4023512e5bd2b2f9c945fab649;
HUVECcytosolLong PolyA+ RNAclone-free1Plus Raw signalgen0117CRHH003wgEncodeEH000266GSM1006915Illumina Genome Analyzer IIx 20 MBbigWig2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=5099; tableName=wgEncodeGisRnaPetHuvecCytosolPapPlusRawRep1V2; md5sum=ad2d11ba5ee585cedf4a2910ca030ba9;
HUVECnucleusLong PolyA+ RNAclone-free1Alignmentsgen0118NRHH001wgEncodeEH000251  Illumina Genome Analyzer II4.4 MBbam.bai2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4031; tableName=wgEncodeGisRnaPetHuvecNucleusPapAlnRep1; md5sum=84a851f8a35395c9891e7d7c096f951e;
HUVECnucleusLong PolyA+ RNAclone-free1Alignmentsgen0118NRHH001wgEncodeEH000251  Illumina Genome Analyzer II3.4 GBbam2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4031; tableName=wgEncodeGisRnaPetHuvecNucleusPapAlnRep1; md5sum=db5c295500bdc9750e756850b05e7ec2;
HUVECnucleusLong PolyA+ RNAclone-free1Clustersgen0118NRHH001wgEncodeEH000251GSM830519Illumina Genome Analyzer II2.2 MBbed2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4031; tableName=wgEncodeGisRnaPetHuvecNucleusPapClustersRep1; md5sum=b0830a5c107425e6a16e0d2d45906614;
HUVECnucleusLong PolyA+ RNAclone-free1FastqRd1gen0118NRHH001wgEncodeEH000251GSM830519Illumina Genome Analyzer II2.3 GBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4031; md5sum=0c6af2812bcc366d3f043aca8992807d;
HUVECnucleusLong PolyA+ RNAclone-free1FastqRd2gen0118NRHH001wgEncodeEH000251GSM830519Illumina Genome Analyzer II2.2 GBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4031; md5sum=2a61843bca0be12bccfca3f009297455;
HUVECnucleusLong PolyA+ RNAclone-free1Minus Raw signalgen0118NRHH001wgEncodeEH000251GSM830519Illumina Genome Analyzer II4.0 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4031; tableName=wgEncodeGisRnaPetHuvecNucleusPapMinusRawRep1; md5sum=16bfd4fd3be0fa6e84b28c03f9e41513;
HUVECnucleusLong PolyA+ RNAclone-free1Plus Raw signalgen0118NRHH001wgEncodeEH000251GSM830519Illumina Genome Analyzer II4.0 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4031; tableName=wgEncodeGisRnaPetHuvecNucleusPapPlusRawRep1; md5sum=7bf4b0198aa4b4b4a8f75bb4b4868f5e;
HeLa-S3cellLong PolyA+ RNAclone-free1Alignments011WCRHH014wgEncodeEH001744  Illumina Genome Analyzer IIx4.5 MBbam.bai2011-04-292012-01-29readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=4025; tableName=wgEncodeGisRnaPetHelas3CellPapAlnRep1; md5sum=dced77dd7838d36fe7359f1309e35c9e;
HeLa-S3cellLong PolyA+ RNAclone-free1Alignments011WCRHH014wgEncodeEH001744  Illumina Genome Analyzer IIx4.5 GBbam2011-04-292012-01-29readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=4025; tableName=wgEncodeGisRnaPetHelas3CellPapAlnRep1; md5sum=aa7805481ffe6c9b43d9652b05051ef9;
HeLa-S3cellLong PolyA+ RNAclone-free1Clusters011WCRHH014wgEncodeEH001744GSM830530Illumina Genome Analyzer IIx4.5 MBbed2011-04-292012-01-29readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=4025; tableName=wgEncodeGisRnaPetHelas3CellPapClustersRep1; md5sum=d8d7ccd1781bbf316a68e8ed88b8d9e6;
HeLa-S3cellLong PolyA+ RNAclone-free1FastqRd1011WCRHH014wgEncodeEH001744GSM830530Illumina Genome Analyzer IIx3.5 GBfastq2011-04-292012-01-29readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=4025; md5sum=bc3680fa8452e4880fb94bba4aa95f13;
HeLa-S3cellLong PolyA+ RNAclone-free1FastqRd2011WCRHH014wgEncodeEH001744GSM830530Illumina Genome Analyzer IIx3.5 GBfastq2011-04-292012-01-29readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=4025; md5sum=5c64b47ef025e6e0ad672c3bf15c18cc;
HeLa-S3cellLong PolyA+ RNAclone-free1Minus Raw signal011WCRHH014wgEncodeEH001744GSM830530Illumina Genome Analyzer IIx 15 MBbigWig2011-04-292012-01-29readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=4025; tableName=wgEncodeGisRnaPetHelas3CellPapMinusRawRep1; md5sum=3e1e497e9edea480337743072e0b5a08;
HeLa-S3cellLong PolyA+ RNAclone-free1Plus Raw signal011WCRHH014wgEncodeEH001744GSM830530Illumina Genome Analyzer IIx 15 MBbigWig2011-04-292012-01-29readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=4025; tableName=wgEncodeGisRnaPetHelas3CellPapPlusRawRep1; md5sum=18c28a22ee4e2601ab28e8d69c46e4a8;
HeLa-S3cytosolLong PolyA+ RNAclone-free1Alignmentsgen0122CRHH002wgEncodeEH000268  Illumina Genome Analyzer IIx5.2 MBbam.bai2009-12-052010-09-05readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-17; subId=4617; tableName=wgEncodeGisRnaPetHelas3CytosolPapAlnRep1; md5sum=27d520753752d64d6cc45f2cdb3f9a72;
HeLa-S3cytosolLong PolyA+ RNAclone-free1Alignmentsgen0122CRHH002wgEncodeEH000268  Illumina Genome Analyzer IIx3.8 GBbam2009-12-052010-09-05readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-17; subId=4617; tableName=wgEncodeGisRnaPetHelas3CytosolPapAlnRep1; md5sum=6a39b4266713df479d2636811c341943;
HeLa-S3cytosolLong PolyA+ RNAclone-free1Clustersgen0122CRHH002wgEncodeEH000268GSM830533Illumina Genome Analyzer IIx1.4 MBbed2009-12-052010-09-05readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-17; subId=4617; tableName=wgEncodeGisRnaPetHelas3CytosolPapClustersRep1; md5sum=4656002d3fe512e9e27e09042794d5ae;
HeLa-S3cytosolLong PolyA+ RNAclone-free1FastqRd1gen0122CRHH002wgEncodeEH000268GSM830533Illumina Genome Analyzer IIx2.8 GBfastq2009-12-052010-09-05readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-17; subId=4617; md5sum=bce8b4ba72d31a8d49e51dc1bf4a9ba3;
HeLa-S3cytosolLong PolyA+ RNAclone-free1FastqRd2gen0122CRHH002wgEncodeEH000268GSM830533Illumina Genome Analyzer IIx2.3 GBfastq2009-12-052010-09-05readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-17; subId=4617; md5sum=2ac73eb4931bf1d2de942c69d8f2b578;
HeLa-S3cytosolLong PolyA+ RNAclone-free1Minus Raw signalgen0122CRHH002wgEncodeEH000268GSM830533Illumina Genome Analyzer IIx 27 MBbigWig2009-12-052010-09-05readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-17; subId=4617; tableName=wgEncodeGisRnaPetHelas3CytosolPapMinusRawRep1; md5sum=03eeca2f8ae0966eafb5a875fae5e34d;
HeLa-S3cytosolLong PolyA+ RNAclone-free1Plus Raw signalgen0122CRHH002wgEncodeEH000268GSM830533Illumina Genome Analyzer IIx 27 MBbigWig2009-12-052010-09-05readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-17; subId=4617; tableName=wgEncodeGisRnaPetHelas3CytosolPapPlusRawRep1; md5sum=594b2cc41bb985e13293e859f51a1312;
HeLa-S3nucleusLong PolyA+ RNAclone-free1Alignmentsgen0124NRHH004wgEncodeEH000267  Illumina Genome Analyzer IIx4.9 MBbam.bai2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=5100; tableName=wgEncodeGisRnaPetHelas3NucleusPapAlnRep1V2; md5sum=b34adfed388ea1a714e653a53a5b8e88;
HeLa-S3nucleusLong PolyA+ RNAclone-free1Alignmentsgen0124NRHH004wgEncodeEH000267  Illumina Genome Analyzer IIx5.1 GBbam2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=5100; tableName=wgEncodeGisRnaPetHelas3NucleusPapAlnRep1V2; md5sum=519c3c36bf919a414d2ef80d94089bc6;
HeLa-S3nucleusLong PolyA+ RNAclone-free1Clustersgen0124NRHH004wgEncodeEH000267GSM1006914Illumina Genome Analyzer IIx6.7 MBbed2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=5100; tableName=wgEncodeGisRnaPetHelas3NucleusPapClustersRep1V2; md5sum=ad5af8d508129839e0eded6504192c15;
HeLa-S3nucleusLong PolyA+ RNAclone-free1FastqRd1gen0124NRHH004wgEncodeEH000267GSM1006914Illumina Genome Analyzer IIx3.7 GBfastq2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=5100; md5sum=de20f645ea6d70f0d2b7fcc10bf01e6d;
HeLa-S3nucleusLong PolyA+ RNAclone-free1FastqRd2gen0124NRHH004wgEncodeEH000267GSM1006914Illumina Genome Analyzer IIx3.5 GBfastq2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=5100; md5sum=9c1bb79ddf69ed86900fe1ff3abe2a40;
HeLa-S3nucleusLong PolyA+ RNAclone-free1Minus Raw signalgen0124NRHH004wgEncodeEH000267GSM1006914Illumina Genome Analyzer IIx9.2 MBbigWig2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=5100; tableName=wgEncodeGisRnaPetHelas3NucleusPapMinusRawRep1V2; md5sum=28e104c08161695dcb540cf2821b7b21;
HeLa-S3nucleusLong PolyA+ RNAclone-free1Plus Raw signalgen0124NRHH004wgEncodeEH000267GSM1006914Illumina Genome Analyzer IIx9.2 MBbigWig2011-11-092012-08-09readType=2x36; submittedDataVersion=V2 - Improved Sequencing; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=5100; tableName=wgEncodeGisRnaPetHelas3NucleusPapPlusRawRep1V2; md5sum=a8685ba0fd00b821ac72d9223480286f;
HepG2cytosolLong PolyA+ RNAclone-based1Alignmentsgen0126CDHH002wgEncodeEH000252  Illumina Genome Analyzer II5.1 MBbam.bai2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-19; subId=2116; tableName=wgEncodeGisRnaPetHepg2CytosolPapAlnRep1; md5sum=0f16146aa141287a7386292944b2b90e;
HepG2cytosolLong PolyA+ RNAclone-based1Alignmentsgen0126CDHH002wgEncodeEH000252  Illumina Genome Analyzer II 90 MBbam2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-19; subId=2116; tableName=wgEncodeGisRnaPetHepg2CytosolPapAlnRep1; md5sum=146dbcdbe6179d456f76221cd093d930;
HepG2cytosolLong PolyA+ RNAclone-based1Clustersgen0126CDHH002wgEncodeEH000252GSM830525Illumina Genome Analyzer II1.4 MBbed2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-03-08; subId=2116; tableName=wgEncodeGisRnaPetHepg2CytosolPapClustersRep1; md5sum=9d66639de524ab6d159d9ceef85c7110;
HepG2cytosolLong PolyA+ RNAclone-based1FastqRd1gen0126CDHH002wgEncodeEH000252GSM830525Illumina Genome Analyzer II456 MBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-17; subId=778; md5sum=01ac2447678a0ab4b72678a3ec64b0e5;
HepG2cytosolLong PolyA+ RNAclone-based1FastqRd2gen0126CDHH002wgEncodeEH000252GSM830525Illumina Genome Analyzer II618 MBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-17; subId=778; md5sum=d800bc3b41a0f5b2430b2fee91c59021;
HepG2cytosolLong PolyA+ RNAclone-based1Minus Raw signalgen0126CDHH002wgEncodeEH000252GSM830525Illumina Genome Analyzer II 32 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-19; subId=2116; tableName=wgEncodeGisRnaPetHepg2CytosolPapMinusRawSigRep1; md5sum=e9cd55e87fe16b7348624e9fb468ef1b;
HepG2cytosolLong PolyA+ RNAclone-based1Plus Raw signalgen0126CDHH002wgEncodeEH000252GSM830525Illumina Genome Analyzer II 32 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-19; subId=2116; tableName=wgEncodeGisRnaPetHepg2CytosolPapPlusRawSigRep1; md5sum=261ba4fcad5e6f496f3652566b83d40a;
HepG2nucleusLong PolyA+ RNAclone-based1Alignmentsgen0129NDHH003wgEncodeEH000253  Illumina Genome Analyzer II5.3 MBbam.bai2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=2117; tableName=wgEncodeGisRnaPetHepg2NucleusPapAlnRep1; md5sum=c478c8f319931356dab50b728685c894;
HepG2nucleusLong PolyA+ RNAclone-based1Alignmentsgen0129NDHH003wgEncodeEH000253  Illumina Genome Analyzer II113 MBbam2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=2117; tableName=wgEncodeGisRnaPetHepg2NucleusPapAlnRep1; md5sum=3bfb08e51cf80893eb71231fc43a2435;
HepG2nucleusLong PolyA+ RNAclone-based1Clustersgen0129NDHH003wgEncodeEH000253GSM830531Illumina Genome Analyzer II2.1 MBbed2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-03-08; subId=2117; tableName=wgEncodeGisRnaPetHepg2NucleusPapClustersRep1; md5sum=0792cee5750de10dbc1c82a0badf9e15;
HepG2nucleusLong PolyA+ RNAclone-based1FastqRd1gen0129NDHH003wgEncodeEH000253GSM830531Illumina Genome Analyzer II586 MBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-17; subId=778; md5sum=7fce1c15605e19bb2fc7019179026010;
HepG2nucleusLong PolyA+ RNAclone-based1FastqRd2gen0129NDHH003wgEncodeEH000253GSM830531Illumina Genome Analyzer II806 MBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-17; subId=778; md5sum=bd73d6539f8d343dc89195842c92849e;
HepG2nucleusLong PolyA+ RNAclone-based1Minus Raw signalgen0129NDHH003wgEncodeEH000253GSM830531Illumina Genome Analyzer II 51 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=2117; tableName=wgEncodeGisRnaPetHepg2NucleusPapMinusRawSigRep1; md5sum=5283f7444669a0a5486d9b4ff8fa9cbe;
HepG2nucleusLong PolyA+ RNAclone-based1Plus Raw signalgen0129NDHH003wgEncodeEH000253GSM830531Illumina Genome Analyzer II 52 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=2117; tableName=wgEncodeGisRnaPetHepg2NucleusPapPlusRawSigRep1; md5sum=ba8cc989c9c1679802b403f62ed6da5b;
IMR90cellLong PolyA+ RNAclone-free1Alignments045WCRHI001wgEncodeEH002924  Illumina HiSeq 20003.9 MBbam.bai2012-03-222012-12-22readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6191; tableName=wgEncodeGisRnaPetImr90CellPapAlnRep1; md5sum=3c98959a863b06a0379a11571e912664;
IMR90cellLong PolyA+ RNAclone-free1Alignments045WCRHI001wgEncodeEH002924  Illumina HiSeq 20001.5 GBbam2012-03-222012-12-22readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6191; tableName=wgEncodeGisRnaPetImr90CellPapAlnRep1; md5sum=6ec7adae8231c730e9483d2d652d415e;
IMR90cellLong PolyA+ RNAclone-free1FastqRd1045WCRHI001wgEncodeEH002924GSM1006908Illumina HiSeq 20001.1 GBfastq2012-03-222012-12-22readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6191; md5sum=25a14832cc5879304047435c6fdc24e1;
IMR90cellLong PolyA+ RNAclone-free1FastqRd2045WCRHI001wgEncodeEH002924GSM1006908Illumina HiSeq 20001.1 GBfastq2012-03-222012-12-22readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6191; md5sum=b54da859be8703ed12b7c88d018aa02c;
IMR90cellLong PolyA+ RNAclone-free1Minus Raw signal045WCRHI001wgEncodeEH002924GSM1006908Illumina HiSeq 2000 12 MBbigWig2012-03-222012-12-22readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6191; tableName=wgEncodeGisRnaPetImr90CellPapMinusRawRep1; md5sum=dc7958ee2d4650829639706cd1f0cbf7;
IMR90cellLong PolyA+ RNAclone-free1Plus Raw signal045WCRHI001wgEncodeEH002924GSM1006908Illumina HiSeq 2000 12 MBbigWig2012-03-222012-12-22readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6191; tableName=wgEncodeGisRnaPetImr90CellPapPlusRawRep1; md5sum=debae4fde60d2eff9b89f2ded03c7819;
IMR90cellLong PolyA+ RNAclone-free2Alignments046WCRHI002wgEncodeEH002924  Illumina HiSeq 20004.0 MBbam.bai2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6394; tableName=wgEncodeGisRnaPetImr90CellPapAlnRep2; md5sum=c13768256e2f75c234b46d4129f7e57c;
IMR90cellLong PolyA+ RNAclone-free2Alignments046WCRHI002wgEncodeEH002924  Illumina HiSeq 20002.8 GBbam2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6394; tableName=wgEncodeGisRnaPetImr90CellPapAlnRep2; md5sum=438f5818fc0625dda374348487483c6b;
IMR90cellLong PolyA+ RNAclone-free2FastqRd1046WCRHI002wgEncodeEH002924GSM1006908Illumina HiSeq 20002.3 GBfastq2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6394; md5sum=cdcfbd1b9b69321d5c0aa5afa9d176c4;
IMR90cellLong PolyA+ RNAclone-free2FastqRd2046WCRHI002wgEncodeEH002924GSM1006908Illumina HiSeq 20002.3 GBfastq2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6394; md5sum=eb21f85a37a56f2e3f52292e76cdef9a;
IMR90cellLong PolyA+ RNAclone-free2Minus Raw signal046WCRHI002wgEncodeEH002924GSM1006908Illumina HiSeq 2000 13 MBbigWig2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6394; tableName=wgEncodeGisRnaPetImr90CellPapMinusRawRep2; md5sum=f14710c35a251e3a2c8da8c3477f6d94;
IMR90cellLong PolyA+ RNAclone-free2Plus Raw signal046WCRHI002wgEncodeEH002924GSM1006908Illumina HiSeq 2000 13 MBbigWig2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6394; tableName=wgEncodeGisRnaPetImr90CellPapPlusRawRep2; md5sum=db21b257c5251ca835c00fe74f2cdb87;
IMR90cellLong PolyA+ RNAclone-free  Clusters045WC,046WCRHI001,RHI002wgEncodeEH002924GSM1006908Illumina HiSeq 20002.7 MBbedCluster2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-06-29; subId=7276; tableName=wgEncodeGisRnaPetImr90CellPapClusters; md5sum=ca9c092382b3055faccf13452c226eb9;
IMR90cytosolLong PolyA+ RNAclone-free1FastqRd1045CRHI003wgEncodeEH002930GSM1006911Illumina HiSeq 20001.9 GBfastq2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6395; md5sum=73ae7d716f3e2a5f5d4b3735b585abc5;
IMR90cytosolLong PolyA+ RNAclone-free1FastqRd2045CRHI003wgEncodeEH002930GSM1006911Illumina HiSeq 20001.9 GBfastq2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6395; md5sum=c18bacd62a8e40981a0fde32aa3f01bf;
IMR90cytosolLong PolyA+ RNAclone-free1Minus Raw signal045CRHI003wgEncodeEH002930GSM1006911Illumina HiSeq 2000 20 MBbigWig2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6395; tableName=wgEncodeGisRnaPetImr90CytosolPapMinusRawRep1; md5sum=559118b91b757919ee0c39e3764da1ea;
IMR90cytosolLong PolyA+ RNAclone-free1Plus Raw signal045CRHI003wgEncodeEH002930GSM1006911Illumina HiSeq 2000 20 MBbigWig2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6395; tableName=wgEncodeGisRnaPetImr90CytosolPapPlusRawRep1; md5sum=a0c754ee0a44deaa9b15304c3290ecb8;
IMR90cytosolLong PolyA+ RNAclone-free2FastqRd1046CRHI004wgEncodeEH002930GSM1006911Illumina HiSeq 20002.0 GBfastq2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6396; md5sum=671aa4e1301ab1fa7be9d98c8aa2c695;
IMR90cytosolLong PolyA+ RNAclone-free2FastqRd2046CRHI004wgEncodeEH002930GSM1006911Illumina HiSeq 20002.0 GBfastq2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6396; md5sum=6cbe900c67d989c639b759d17a2dd613;
IMR90cytosolLong PolyA+ RNAclone-free2Minus Raw signal046CRHI004wgEncodeEH002930GSM1006911Illumina HiSeq 2000 19 MBbigWig2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6396; tableName=wgEncodeGisRnaPetImr90CytosolPapMinusRawRep2; md5sum=caabf1bce1ba1b24bac6ee7e1ab3a1b5;
IMR90cytosolLong PolyA+ RNAclone-free2Plus Raw signal046CRHI004wgEncodeEH002930GSM1006911Illumina HiSeq 2000 19 MBbigWig2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6396; tableName=wgEncodeGisRnaPetImr90CytosolPapPlusRawRep2; md5sum=d6ba0a51e726b63bab92f379e6924f1b;
IMR90cytosolLong PolyA+ RNAclone-free  Clusters045C,046CRHI003,RHI004wgEncodeEH002930GSM1006911Illumina HiSeq 20003.5 MBbedCluster2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-06-29; subId=7187; tableName=wgEncodeGisRnaPetImr90CytosolPapClusters; md5sum=ddc562fb1312dac43ce66b9b89b0c128;
IMR90cytosolLong PolyA+ RNAclone-free1Alignments045CRHI003wgEncodeEH002930  Illumina HiSeq 20004.2 MBbam.bai2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6395; tableName=wgEncodeGisRnaPetImr90CytosolPapAlnRep1; md5sum=3ac0c72ab414d6266806f92bdca490d2;
IMR90cytosolLong PolyA+ RNAclone-free1Alignments045CRHI003wgEncodeEH002930  Illumina HiSeq 20002.4 GBbam2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6395; tableName=wgEncodeGisRnaPetImr90CytosolPapAlnRep1; md5sum=096039af97496deba283185219d3aab2;
IMR90cytosolLong PolyA+ RNAclone-free2Alignments046CRHI004wgEncodeEH002930  Illumina HiSeq 20004.2 MBbam.bai2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6396; tableName=wgEncodeGisRnaPetImr90CytosolPapAlnRep2; md5sum=f99e73a16ffc3052b5c673a31226592f;
IMR90cytosolLong PolyA+ RNAclone-free2Alignments046CRHI004wgEncodeEH002930  Illumina HiSeq 20002.4 GBbam2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6396; tableName=wgEncodeGisRnaPetImr90CytosolPapAlnRep2; md5sum=6b656282c05cdb8d0b0cb8b34f638a16;
IMR90nucleusLong PolyA+ RNAclone-free1FastqRd1045NRHI005wgEncodeEH002931GSM1006913Illumina HiSeq 20002.3 GBfastq2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6397; md5sum=cc8258801a21ee5fbfcc7363f7dc0aed;
IMR90nucleusLong PolyA+ RNAclone-free1FastqRd2045NRHI005wgEncodeEH002931GSM1006913Illumina HiSeq 20002.3 GBfastq2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6397; md5sum=818d133a7cb0eeb18138cfa980d46220;
IMR90nucleusLong PolyA+ RNAclone-free1Minus Raw signal045NRHI005wgEncodeEH002931GSM1006913Illumina HiSeq 2000 15 MBbigWig2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6397; tableName=wgEncodeGisRnaPetImr90NucleusPapMinusRawRep1; md5sum=188ce7e0f0717d8c1f17b3269d25780a;
IMR90nucleusLong PolyA+ RNAclone-free1Plus Raw signal045NRHI005wgEncodeEH002931GSM1006913Illumina HiSeq 2000 15 MBbigWig2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6397; tableName=wgEncodeGisRnaPetImr90NucleusPapPlusRawRep1; md5sum=e24450de00e320f5e46aeb8e2c10c676;
IMR90nucleusLong PolyA+ RNAclone-free2FastqRd1046NRHI006wgEncodeEH002931GSM1006913Illumina HiSeq 20002.4 GBfastq2012-03-282012-12-28readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6537; md5sum=9b114dab268079c57676edadeba13f1d;
IMR90nucleusLong PolyA+ RNAclone-free2FastqRd2046NRHI006wgEncodeEH002931GSM1006913Illumina HiSeq 20002.4 GBfastq2012-03-282012-12-28readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6537; md5sum=ba037139508f7bb9df97751477ab3d85;
IMR90nucleusLong PolyA+ RNAclone-free2Minus Raw signal046NRHI006wgEncodeEH002931GSM1006913Illumina HiSeq 2000 19 MBbigWig2012-03-282012-12-28readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6537; tableName=wgEncodeGisRnaPetImr90NucleusPapMinusRawRep2; md5sum=a936e9dacca2d7565b03404d2a3a0efe;
IMR90nucleusLong PolyA+ RNAclone-free2Plus Raw signal046NRHI006wgEncodeEH002931GSM1006913Illumina HiSeq 2000 19 MBbigWig2012-03-282012-12-28readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6537; tableName=wgEncodeGisRnaPetImr90NucleusPapPlusRawRep2; md5sum=a603b124c13c0784294e8bf7f64e1198;
IMR90nucleusLong PolyA+ RNAclone-free  Clusters045N,046NRHI005,RHI006wgEncodeEH002931GSM1006913Illumina HiSeq 20003.4 MBbedCluster2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-06-29; subId=7269; tableName=wgEncodeGisRnaPetImr90NucleusPapClusters; md5sum=62119430e017036d6ede9b55fcb70f3a;
IMR90nucleusLong PolyA+ RNAclone-free1Alignments045NRHI005wgEncodeEH002931  Illumina HiSeq 20003.9 MBbam.bai2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6397; tableName=wgEncodeGisRnaPetImr90NucleusPapAlnRep1; md5sum=8680e23f8b1186f70be5c5c8c183962e;
IMR90nucleusLong PolyA+ RNAclone-free1Alignments045NRHI005wgEncodeEH002931  Illumina HiSeq 20002.8 GBbam2012-03-272012-12-27readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6397; tableName=wgEncodeGisRnaPetImr90NucleusPapAlnRep1; md5sum=9b688928c1b9b9a524c46ab696f3e5f2;
IMR90nucleusLong PolyA+ RNAclone-free2Alignments046NRHI006wgEncodeEH002931  Illumina HiSeq 20004.2 MBbam.bai2012-03-282012-12-28readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6537; tableName=wgEncodeGisRnaPetImr90NucleusPapAlnRep2; md5sum=9812ba448137f9d7c2c6a9bc93ccefb2;
IMR90nucleusLong PolyA+ RNAclone-free2Alignments046NRHI006wgEncodeEH002931  Illumina HiSeq 20003.0 GBbam2012-03-282012-12-28readType=2x36; donorId=58607680; dataVersion=ENCODE Mar 2012 Freeze; subId=6537; tableName=wgEncodeGisRnaPetImr90NucleusPapAlnRep2; md5sum=ea30ac65f46bf45ddfd78188ac710a85;
K562chromatinTotal RNAclone-based1Alignmentsgen0135CHPHK001wgEncodeEH000254  Illumina Genome Analyzer II3.3 MBbam.bai2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=1986; tableName=wgEncodeGisRnaPetK562ChromatinTotalAlnRep1; md5sum=80dc3b869d568a459e56ee03f795099d;
K562chromatinTotal RNAclone-based1Alignmentsgen0135CHPHK001wgEncodeEH000254  Illumina Genome Analyzer II 16 MBbam2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=1986; tableName=wgEncodeGisRnaPetK562ChromatinTotalAlnRep1; md5sum=013c2f36f196e1880e8312951a305dea;
K562chromatinTotal RNAclone-based1Clustersgen0135CHPHK001wgEncodeEH000254GSM830536Illumina Genome Analyzer II785 KBbed2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-03-08; subId=1986; tableName=wgEncodeGisRnaPetK562ChromatinTotalClustersRep1; md5sum=3160d3f0ea455fdde6dcc71daef5f1d3;
K562chromatinTotal RNAclone-based1Minus Raw signalgen0135CHPHK001wgEncodeEH000254GSM830536Illumina Genome Analyzer II 11 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=1986; tableName=wgEncodeGisRnaPetK562ChromatinTotalMinusRawSigRep1; md5sum=73c07e72819bac301b9c8005438323da;
K562chromatinTotal RNAclone-based1Plus Raw signalgen0135CHPHK001wgEncodeEH000254GSM830536Illumina Genome Analyzer II 11 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=1986; tableName=wgEncodeGisRnaPetK562ChromatinTotalPlusRawSigRep1; md5sum=0a7a3ba1eab8f0bd077aa68f1571b53a;
K562chromatinTotal RNAclone-based1Raw datagen0135CHPHK001wgEncodeEH000254GSM830536Illumina Genome Analyzer II227 MBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-04-07; subId=841; md5sum=5bb5797e8b3652e1db48d4e40cc7b8f6;
K562cytosolLong PolyA+ RNAclone-free1Alignmentsgen0138CIHK009010015wgEncodeEH000255  Illumina Genome Analyzer IIx4.5 MBbam.bai2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4616; tableName=wgEncodeGisRnaPetK562CytosolPapAlnRep1; md5sum=b687ae1427e2c46926a46b6cdf208918;
K562cytosolLong PolyA+ RNAclone-free1Alignmentsgen0138CIHK009010015wgEncodeEH000255  Illumina Genome Analyzer IIx3.2 GBbam2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4616; tableName=wgEncodeGisRnaPetK562CytosolPapAlnRep1; md5sum=09b28fa2071192f62aac17db362ca53d;
K562cytosolLong PolyA+ RNAclone-free1Clustersgen0138CIHK009010015wgEncodeEH000255GSM830537Illumina Genome Analyzer IIx5.2 MBbed2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4616; tableName=wgEncodeGisRnaPetK562CytosolPapClustersRep1; md5sum=385505dab8c87f9f4836b9f295159343;
K562cytosolLong PolyA+ RNAclone-free1FastqRd1gen0138CIHK009010015wgEncodeEH000255GSM830537Illumina Genome Analyzer IIx2.6 GBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4616; md5sum=b5c88c91eea636eaf4525fa99e0f61c0;
K562cytosolLong PolyA+ RNAclone-free1FastqRd2gen0138CIHK009010015wgEncodeEH000255GSM830537Illumina Genome Analyzer IIx2.4 GBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4616; md5sum=970adbb8dfe23f802af69a7d4b166742;
K562cytosolLong PolyA+ RNAclone-free1Minus Raw signalgen0138CIHK009010015wgEncodeEH000255GSM830537Illumina Genome Analyzer IIx 14 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4616; tableName=wgEncodeGisRnaPetK562CytosolPapMinusRawRep1; md5sum=c20ced2d1bf34f979f22c41f062d6c52;
K562cytosolLong PolyA+ RNAclone-free1Plus Raw signalgen0138CIHK009010015wgEncodeEH000255GSM830537Illumina Genome Analyzer IIx 14 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4616; tableName=wgEncodeGisRnaPetK562CytosolPapPlusRawRep1; md5sum=ee4bd8baaf3c4437e7472fdda293befc;
K562nucleolusTotal RNAclone-based1Alignmentsgen0145NLDHK008wgEncodeEH000256  Illumina Genome Analyzer II4.3 MBbam.bai2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=1988; tableName=wgEncodeGisRnaPetK562NucleolusTotalAlnRep1; md5sum=58cd68a61b8121f054a5d979c5eb8f88;
K562nucleolusTotal RNAclone-based1Alignmentsgen0145NLDHK008wgEncodeEH000256  Illumina Genome Analyzer II 22 MBbam2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=1988; tableName=wgEncodeGisRnaPetK562NucleolusTotalAlnRep1; md5sum=53a48c58e9f6c70f02b0b79553b7ead1;
K562nucleolusTotal RNAclone-based1Clustersgen0145NLDHK008wgEncodeEH000256GSM830521Illumina Genome Analyzer II696 KBbed2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-03-08; subId=1988; tableName=wgEncodeGisRnaPetK562NucleolusTotalClustersRep1; md5sum=6245e6e550bdd7b02943dbec4e98500d;
K562nucleolusTotal RNAclone-based1FastqRd1gen0145NLDHK008wgEncodeEH000256GSM830521Illumina Genome Analyzer II161 MBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-04-07; subId=841; md5sum=4ab47e7e40bca37fd0bcb366128747e3;
K562nucleolusTotal RNAclone-based1FastqRd2gen0145NLDHK008wgEncodeEH000256GSM830521Illumina Genome Analyzer II195 MBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-04-07; subId=841; md5sum=eb0e49911e705623dee7f3e6e39badf6;
K562nucleolusTotal RNAclone-based1Minus Raw signalgen0145NLDHK008wgEncodeEH000256GSM830521Illumina Genome Analyzer II 16 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=1988; tableName=wgEncodeGisRnaPetK562NucleolusTotalMinusRawSigRep1; md5sum=9188f2fc82976cecba4d98c7c99973ea;
K562nucleolusTotal RNAclone-based1Plus Raw signalgen0145NLDHK008wgEncodeEH000256GSM830521Illumina Genome Analyzer II 16 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=1988; tableName=wgEncodeGisRnaPetK562NucleolusTotalPlusRawSigRep1; md5sum=a1587b6c346639e0f9aff9923e47b3e7;
K562nucleoplasmTotal RNAclone-based1Alignmentsgen0148NPPHK002wgEncodeEH000257  Illumina Genome Analyzer II523 KBbam.bai2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=1987; tableName=wgEncodeGisRnaPetK562NucleoplasmTotalAlnRep1; md5sum=e43dcab6755ebb781df4eb92f7f0d7fa;
K562nucleoplasmTotal RNAclone-based1Alignmentsgen0148NPPHK002wgEncodeEH000257  Illumina Genome Analyzer II456 KBbam2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=1987; tableName=wgEncodeGisRnaPetK562NucleoplasmTotalAlnRep1; md5sum=c2b8e2fa042e8f0617b2fefc2cbff066;
K562nucleoplasmTotal RNAclone-based1Clustersgen0148NPPHK002wgEncodeEH000257GSM830524Illumina Genome Analyzer II 24 KBbed2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-03-08; subId=1987; tableName=wgEncodeGisRnaPetK562NucleoplasmTotalClustersRep1; md5sum=60279d2d6461fa892258d58fb35bb211;
K562nucleoplasmTotal RNAclone-based1Minus Raw signalgen0148NPPHK002wgEncodeEH000257GSM830524Illumina Genome Analyzer II662 KBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=1987; tableName=wgEncodeGisRnaPetK562NucleoplasmTotalMinusRawSigRep1; md5sum=c98b98e09faa6d2ea62ba00f39b06047;
K562nucleoplasmTotal RNAclone-based1Plus Raw signalgen0148NPPHK002wgEncodeEH000257GSM830524Illumina Genome Analyzer II670 KBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=1987; tableName=wgEncodeGisRnaPetK562NucleoplasmTotalPlusRawSigRep1; md5sum=43bc9d2619ca5a974c252c766107e40a;
K562nucleoplasmTotal RNAclone-based1Raw datagen0148NPPHK002wgEncodeEH000257GSM830524Illumina Genome Analyzer II 72 MBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE June 2010 Freeze; dateResubmitted=2010-04-07; subId=841; md5sum=fbc0be62aee6010a9e633b141be8b951;
K562nucleusLong PolyA+ RNAclone-based1Alignmentsgen0150NDHK006wgEncodeEH000258  Illumina Genome Analyzer II5.3 MBbam.bai2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=1984; tableName=wgEncodeGisRnaPetK562NucleusPapAlnRep1; md5sum=2a17aec7564927022171ad7ac1f06865;
K562nucleusLong PolyA+ RNAclone-based1Alignmentsgen0150NDHK006wgEncodeEH000258  Illumina Genome Analyzer II 92 MBbam2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=1984; tableName=wgEncodeGisRnaPetK562NucleusPapAlnRep1; md5sum=ee0137cced04dc5b30a2f07c7b9c5fb5;
K562nucleusLong PolyA+ RNAclone-based1Clustersgen0150NDHK006wgEncodeEH000258GSM830526Illumina Genome Analyzer II1.6 MBbed2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-03-08; subId=1984; tableName=wgEncodeGisRnaPetK562NucleusPapClustersRep1; md5sum=c622f345e6ab92dee2ef9fb4d7b91c42;
K562nucleusLong PolyA+ RNAclone-based1FastqRd1gen0150NDHK006wgEncodeEH000258GSM830526Illumina Genome Analyzer II581 MBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-17; subId=778; md5sum=9777c2e01d3693705695a377d40dee98;
K562nucleusLong PolyA+ RNAclone-based1FastqRd2gen0150NDHK006wgEncodeEH000258GSM830526Illumina Genome Analyzer II601 MBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-17; subId=778; md5sum=5b6963834b726eb0379e97d9ee3a3e72;
K562nucleusLong PolyA+ RNAclone-based1Minus Raw signalgen0150NDHK006wgEncodeEH000258GSM830526Illumina Genome Analyzer II 42 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=1984; tableName=wgEncodeGisRnaPetK562NucleusPapMinusRawSigRep1; md5sum=0eb3c08edbe2f45db1a6b0b8762ea3f0;
K562nucleusLong PolyA+ RNAclone-based1Plus Raw signalgen0150NDHK006wgEncodeEH000258GSM830526Illumina Genome Analyzer II 42 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-08-18; subId=1984; tableName=wgEncodeGisRnaPetK562NucleusPapPlusRawSigRep1; md5sum=c727a7b67c7b0b8f28d8f511ebb3b89e;
K562polysomeLong PolyA+ RNAclone-based1Alignmentsgen0153PDHK007wgEncodeEH000259  Illumina Genome Analyzer II5.4 MBbam.bai2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-22; subId=1985; tableName=wgEncodeGisRnaPetK562PolysomePapAlnRep1; md5sum=046390ffe04c64fffb7106e625f7725d;
K562polysomeLong PolyA+ RNAclone-based1Alignmentsgen0153PDHK007wgEncodeEH000259  Illumina Genome Analyzer II354 MBbam2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-22; subId=1985; tableName=wgEncodeGisRnaPetK562PolysomePapAlnRep1; md5sum=13f582655eea95d8f4ec5083fd181f99;
K562polysomeLong PolyA+ RNAclone-based1Clustersgen0153PDHK007wgEncodeEH000259GSM830527Illumina Genome Analyzer II2.1 MBbed2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-03-08; subId=1985; tableName=wgEncodeGisRnaPetK562PolysomePapClustersRep1; md5sum=1c669e9eb5dcc50d94576297ab48991b;
K562polysomeLong PolyA+ RNAclone-based1FastqRd1gen0153PDHK007wgEncodeEH000259GSM830527Illumina Genome Analyzer II2.0 GBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-17; subId=778; md5sum=71187261d5a845d218f80ee0fa3d8306;
K562polysomeLong PolyA+ RNAclone-based1FastqRd2gen0153PDHK007wgEncodeEH000259GSM830527Illumina Genome Analyzer II2.1 GBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-17; subId=778; md5sum=34362616d7bd2cf7b940cea07c5d10ec;
K562polysomeLong PolyA+ RNAclone-based1Minus Raw signalgen0153PDHK007wgEncodeEH000259GSM830527Illumina Genome Analyzer II 59 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-22; subId=1985; tableName=wgEncodeGisRnaPetK562PolysomePapMinusRawSigRep1; md5sum=42bb878a4e876a65ec7b8a4b0e5f6265;
K562polysomeLong PolyA+ RNAclone-based1Plus Raw signalgen0153PDHK007wgEncodeEH000259GSM830527Illumina Genome Analyzer II 59 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-22; subId=1985; tableName=wgEncodeGisRnaPetK562PolysomePapPlusRawSigRep1; md5sum=676ed61bb1072774127e023944d63dbc;
MCF-7cellLong PolyA+ RNAclone-free3Alignments089WCRHM046wgEncodeEH002934  Illumina HiSeq 20004.5 MBbam.bai2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6403; tableName=wgEncodeGisRnaPetMcf7CellPapAlnRep3; md5sum=1af0036ed9aff87b124926ba0270ac3c;
MCF-7cellLong PolyA+ RNAclone-free3Alignments089WCRHM046wgEncodeEH002934  Illumina HiSeq 20002.8 GBbam2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6403; tableName=wgEncodeGisRnaPetMcf7CellPapAlnRep3; md5sum=8b5e9689e83a1cfdefe99ca74670eec7;
MCF-7cellLong PolyA+ RNAclone-free3FastqRd1089WCRHM046wgEncodeEH002934GSM1006905Illumina HiSeq 20002.4 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6403; md5sum=741ea38a005ddb164ae1d2ede35853a9;
MCF-7cellLong PolyA+ RNAclone-free3FastqRd2089WCRHM046wgEncodeEH002934GSM1006905Illumina HiSeq 20002.3 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6403; md5sum=973e5e20a1bb0c3efd1d47ca97cf89e9;
MCF-7cellLong PolyA+ RNAclone-free3Minus Raw signal089WCRHM046wgEncodeEH002934GSM1006905Illumina HiSeq 2000 19 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6403; tableName=wgEncodeGisRnaPetMcf7CellPapMinusRawRep3; md5sum=d47c57713fe0a6eb59c891efe25b4747;
MCF-7cellLong PolyA+ RNAclone-free3Plus Raw signal089WCRHM046wgEncodeEH002934GSM1006905Illumina HiSeq 2000 19 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6403; tableName=wgEncodeGisRnaPetMcf7CellPapPlusRawRep3; md5sum=b8a21b1aeb7ec64675f7f9a43348765b;
MCF-7cellLong PolyA+ RNAclone-free4Alignments090WCRHM047wgEncodeEH002934  Illumina HiSeq 20004.6 MBbam.bai2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6402; tableName=wgEncodeGisRnaPetMcf7CellPapAlnRep4; md5sum=6d88775f3c3baaf73d5c85436a5d7fd2;
MCF-7cellLong PolyA+ RNAclone-free4Alignments090WCRHM047wgEncodeEH002934  Illumina HiSeq 20003.0 GBbam2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6402; tableName=wgEncodeGisRnaPetMcf7CellPapAlnRep4; md5sum=43ba39a1ad89c733b4db24a99f86e6d7;
MCF-7cellLong PolyA+ RNAclone-free4FastqRd1090WCRHM047wgEncodeEH002934GSM1006905Illumina HiSeq 20002.5 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6402; md5sum=89c3166f2974ab3dc7ecf64b3bf45e60;
MCF-7cellLong PolyA+ RNAclone-free4FastqRd2090WCRHM047wgEncodeEH002934GSM1006905Illumina HiSeq 20002.3 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6402; md5sum=0b320665c59fa414d6bf305f737cd64e;
MCF-7cellLong PolyA+ RNAclone-free4Minus Raw signal090WCRHM047wgEncodeEH002934GSM1006905Illumina HiSeq 2000 20 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6402; tableName=wgEncodeGisRnaPetMcf7CellPapMinusRawRep4; md5sum=707ee6124af96edd2ddded4618a0fbe8;
MCF-7cellLong PolyA+ RNAclone-free4Plus Raw signal090WCRHM047wgEncodeEH002934GSM1006905Illumina HiSeq 2000 20 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6402; tableName=wgEncodeGisRnaPetMcf7CellPapPlusRawRep4; md5sum=3372d1241d34f69a80b2c759835253f3;
MCF-7cellLong PolyA+ RNAiIDR  Clusters089WC,090WCRHM046,RHM047wgEncodeEH002934GSM1006905Illumina HiSeq 20003.0 MBbedCluster2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-06-29; subId=7267; tableName=wgEncodeGisRnaPetMcf7CellPapClusters; md5sum=9429a9022c64788a8ccb48fe0d5e8124;
MCF-7cytosolLong PolyA+ RNAclone-free3Alignments089CRHM044wgEncodeEH002932  Illumina HiSeq 20003.9 MBbam.bai2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6401; tableName=wgEncodeGisRnaPetMcf7CytosolPapAlnRep3; md5sum=e6e92e482e6787322d8c9301ece8c010;
MCF-7cytosolLong PolyA+ RNAclone-free3Alignments089CRHM044wgEncodeEH002932  Illumina HiSeq 20001.9 GBbam2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6401; tableName=wgEncodeGisRnaPetMcf7CytosolPapAlnRep3; md5sum=ddffbcb748bcb4ccd45f678d904c4e69;
MCF-7cytosolLong PolyA+ RNAclone-free3FastqRd1089CRHM044wgEncodeEH002932GSM1006904Illumina HiSeq 20001.5 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6401; md5sum=2d2d1ce2fa2f10c1e2c6236f2d516c0d;
MCF-7cytosolLong PolyA+ RNAclone-free3FastqRd2089CRHM044wgEncodeEH002932GSM1006904Illumina HiSeq 20001.5 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6401; md5sum=ad3d80d4213ac3967a1a4da1c74ffaa1;
MCF-7cytosolLong PolyA+ RNAclone-free3Minus Raw signal089CRHM044wgEncodeEH002932GSM1006904Illumina HiSeq 2000 13 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6401; tableName=wgEncodeGisRnaPetMcf7CytosolPapMinusRawRep3; md5sum=cde79b57f953ae7617f3087280489498;
MCF-7cytosolLong PolyA+ RNAclone-free3Plus Raw signal089CRHM044wgEncodeEH002932GSM1006904Illumina HiSeq 2000 13 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6401; tableName=wgEncodeGisRnaPetMcf7CytosolPapPlusRawRep3; md5sum=bbd85b5f6078d66e7c6c879d50019eaa;
MCF-7cytosolLong PolyA+ RNAclone-free4Alignments090CRHM045wgEncodeEH002932  Illumina HiSeq 20003.9 MBbam.bai2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6407; tableName=wgEncodeGisRnaPetMcf7CytosolPapAlnRep4; md5sum=5c153bdbdcfbbe44f5c607499ea355b4;
MCF-7cytosolLong PolyA+ RNAclone-free4Alignments090CRHM045wgEncodeEH002932  Illumina HiSeq 20001.9 GBbam2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6407; tableName=wgEncodeGisRnaPetMcf7CytosolPapAlnRep4; md5sum=4fb4372cdfaa15ed807b110fa58bafc8;
MCF-7cytosolLong PolyA+ RNAclone-free4FastqRd1090CRHM045wgEncodeEH002932GSM1006904Illumina HiSeq 20001.5 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6407; md5sum=846eb856626b8df9ce22a9e792040a30;
MCF-7cytosolLong PolyA+ RNAclone-free4FastqRd2090CRHM045wgEncodeEH002932GSM1006904Illumina HiSeq 20001.5 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6407; md5sum=1d87bac52bb37e929438e8ad52032b57;
MCF-7cytosolLong PolyA+ RNAclone-free4Minus Raw signal090CRHM045wgEncodeEH002932GSM1006904Illumina HiSeq 2000 13 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6407; tableName=wgEncodeGisRnaPetMcf7CytosolPapMinusRawRep4; md5sum=cd60d5a1e9466b8d280734cb60d79c5f;
MCF-7cytosolLong PolyA+ RNAclone-free4Plus Raw signal090CRHM045wgEncodeEH002932GSM1006904Illumina HiSeq 2000 13 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6407; tableName=wgEncodeGisRnaPetMcf7CytosolPapPlusRawRep4; md5sum=c616cab896b3fd3a8a7d30a5186a4b9a;
MCF-7cytosolLong PolyA+ RNAclone-free  Clusters089C,090CRHM044,RHM045wgEncodeEH002932GSM1006904Illumina HiSeq 20002.4 MBbedCluster2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-06-29; subId=7273; tableName=wgEncodeGisRnaPetMcf7CytosolPapClusters; md5sum=157f067028bf9b6f47e5cdfa40be5f95;
MCF-7nucleusLong PolyA+ RNAclone-free3FastqRd1089NRHM054wgEncodeEH002933GSM1006912Illumina HiSeq 20002.7 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6406; md5sum=bcb40b24f500ab611370e63bd71f9154;
MCF-7nucleusLong PolyA+ RNAclone-free3FastqRd2089NRHM054wgEncodeEH002933GSM1006912Illumina HiSeq 20002.6 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6406; md5sum=70521fe20dd1d97c53b5adcb615b4cc1;
MCF-7nucleusLong PolyA+ RNAclone-free3Minus Raw signal089NRHM054wgEncodeEH002933GSM1006912Illumina HiSeq 20001.7 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6406; tableName=wgEncodeGisRnaPetMcf7NucleusPapMinusRawRep3; md5sum=e65fb041c024dc00b862152051088dc4;
MCF-7nucleusLong PolyA+ RNAclone-free3Plus Raw signal089NRHM054wgEncodeEH002933GSM1006912Illumina HiSeq 20001.7 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6406; tableName=wgEncodeGisRnaPetMcf7NucleusPapPlusRawRep3; md5sum=fe7f1d386ccba5e63ab97c58b7152702;
MCF-7nucleusLong PolyA+ RNAclone-free4FastqRd1090NRHM055wgEncodeEH002933GSM1006912Illumina HiSeq 20002.9 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6410; md5sum=92d572430fc74bd97d67f8a3f9693c78;
MCF-7nucleusLong PolyA+ RNAclone-free4FastqRd2090NRHM055wgEncodeEH002933GSM1006912Illumina HiSeq 20002.8 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6410; md5sum=14c71b084f756fafe871c0a27795e1fb;
MCF-7nucleusLong PolyA+ RNAclone-free4Minus Raw signal090NRHM055wgEncodeEH002933GSM1006912Illumina HiSeq 20001.7 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6410; tableName=wgEncodeGisRnaPetMcf7NucleusPapMinusRawRep4; md5sum=d1f9121730e28ff9ae9902e77aaa24db;
MCF-7nucleusLong PolyA+ RNAclone-free4Plus Raw signal090NRHM055wgEncodeEH002933GSM1006912Illumina HiSeq 20001.7 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6410; tableName=wgEncodeGisRnaPetMcf7NucleusPapPlusRawRep4; md5sum=5d0a60eec0e517bfe5acc20aa637931b;
MCF-7nucleusLong PolyA+ RNAclone-free  Clusters089N,090NRHM054,RHM055wgEncodeEH002933GSM1006912Illumina HiSeq 2000 72 KBbedCluster2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-06-29; subId=7272; tableName=wgEncodeGisRnaPetMcf7NucleusPapClusters; md5sum=7339e29c127c1a17405a6589642f3609;
MCF-7nucleusLong PolyA+ RNAclone-free3Alignments089NRHM054wgEncodeEH002933  Illumina HiSeq 20004.2 MBbam.bai2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6406; tableName=wgEncodeGisRnaPetMcf7NucleusPapAlnRep3; md5sum=984a7e9cbde44afa8d3dc3aeaa752ebd;
MCF-7nucleusLong PolyA+ RNAclone-free3Alignments089NRHM054wgEncodeEH002933  Illumina HiSeq 20003.4 GBbam2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6406; tableName=wgEncodeGisRnaPetMcf7NucleusPapAlnRep3; md5sum=cba510d76113b610b882d5a83bdf1bb1;
MCF-7nucleusLong PolyA+ RNAclone-free4Alignments090NRHM055wgEncodeEH002933  Illumina HiSeq 20004.1 MBbam.bai2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6410; tableName=wgEncodeGisRnaPetMcf7NucleusPapAlnRep4; md5sum=689a12d24c2c8a113b87dd9d6cc5409d;
MCF-7nucleusLong PolyA+ RNAclone-free4Alignments090NRHM055wgEncodeEH002933  Illumina HiSeq 20003.6 GBbam2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6410; tableName=wgEncodeGisRnaPetMcf7NucleusPapAlnRep4; md5sum=6a773ae9b3cc196d9dd8f484ab6423f1;
NHEKcytosolLong PolyA+ RNAclone-free1Alignmentsgen0156CIHN011wgEncodeEH000260  Illumina Genome Analyzer IIx3.8 MBbam.bai2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4026; tableName=wgEncodeGisRnaPetNhekCytosolPapAlnRep1; md5sum=3f84d25224ec72111e41d73c9c2b8395;
NHEKcytosolLong PolyA+ RNAclone-free1Alignmentsgen0156CIHN011wgEncodeEH000260  Illumina Genome Analyzer IIx1.1 GBbam2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4026; tableName=wgEncodeGisRnaPetNhekCytosolPapAlnRep1; md5sum=dcc5d59fa996a2346312e017553b7189;
NHEKcytosolLong PolyA+ RNAclone-free1Clustersgen0156CIHN011wgEncodeEH000260GSM830522Illumina Genome Analyzer IIx4.6 MBbed2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4026; tableName=wgEncodeGisRnaPetNhekCytosolPapClustersRep1; md5sum=350035cc394b24a152381400b9d908bf;
NHEKcytosolLong PolyA+ RNAclone-free1FastqRd1gen0156CIHN011wgEncodeEH000260GSM830522Illumina Genome Analyzer IIx882 MBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4026; md5sum=3d66efa677d17add52deec772909e365;
NHEKcytosolLong PolyA+ RNAclone-free1FastqRd2gen0156CIHN011wgEncodeEH000260GSM830522Illumina Genome Analyzer IIx867 MBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4026; md5sum=c515db639fc264e726e0ecf9f60ff981;
NHEKcytosolLong PolyA+ RNAclone-free1Minus Raw signalgen0156CIHN011wgEncodeEH000260GSM830522Illumina Genome Analyzer IIx 10 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4026; tableName=wgEncodeGisRnaPetNhekCytosolPapMinusRawRep1; md5sum=b4550476a11e2b248a29f2c70e5a4317;
NHEKcytosolLong PolyA+ RNAclone-free1Plus Raw signalgen0156CIHN011wgEncodeEH000260GSM830522Illumina Genome Analyzer IIx 10 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4026; tableName=wgEncodeGisRnaPetNhekCytosolPapPlusRawRep1; md5sum=0cef6eeda63434f2f8ab4df39319ad6c;
NHEKnucleusLong PolyA+ RNAclone-free1Alignmentsgen0158NIHN012wgEncodeEH000261  Illumina Genome Analyzer IIx4.2 MBbam.bai2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4028; tableName=wgEncodeGisRnaPetNhekNucleusPapAlnRep1; md5sum=ac569a421e2f61ecf675364298b760bf;
NHEKnucleusLong PolyA+ RNAclone-free1Alignmentsgen0158NIHN012wgEncodeEH000261  Illumina Genome Analyzer IIx1.7 GBbam2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4028; tableName=wgEncodeGisRnaPetNhekNucleusPapAlnRep1; md5sum=c75f3771c79a4573a13183f45b9a116f;
NHEKnucleusLong PolyA+ RNAclone-free1Clustersgen0158NIHN012wgEncodeEH000261GSM830523Illumina Genome Analyzer IIx4.5 MBbed2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4028; tableName=wgEncodeGisRnaPetNhekNucleusPapClustersRep1; md5sum=80ae968e0ee60496f19a619eb58e6884;
NHEKnucleusLong PolyA+ RNAclone-free1FastqRd1gen0158NIHN012wgEncodeEH000261GSM830523Illumina Genome Analyzer IIx1.3 GBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4028; md5sum=499f6f261dcfa2f451db94d0f5e587af;
NHEKnucleusLong PolyA+ RNAclone-free1FastqRd2gen0158NIHN012wgEncodeEH000261GSM830523Illumina Genome Analyzer IIx1.2 GBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4028; md5sum=98008b9f33e355d609b99502a92ae134;
NHEKnucleusLong PolyA+ RNAclone-free1Minus Raw signalgen0158NIHN012wgEncodeEH000261GSM830523Illumina Genome Analyzer IIx 13 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4028; tableName=wgEncodeGisRnaPetNhekNucleusPapMinusRawRep1; md5sum=5de798a6aac7da424adf49247abe7fc8;
NHEKnucleusLong PolyA+ RNAclone-free1Plus Raw signalgen0158NIHN012wgEncodeEH000261GSM830523Illumina Genome Analyzer IIx 13 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Mar 2012 Freeze; dateResubmitted=2011-05-05; subId=4028; tableName=wgEncodeGisRnaPetNhekNucleusPapPlusRawRep1; md5sum=9ddd1d0717f21d92942c843ed4530af1;
SK-N-SHcellLong PolyA+ RNAclone-free3Alignments085WCRHS015wgEncodeEH002926  Illumina HiSeq 20004.0 MBbam.bai2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6234; tableName=wgEncodeGisRnaPetSknshCellPapAlnRep3; md5sum=bf6ae18f1bc1b7a4dba20fd64cdeab3d;
SK-N-SHcellLong PolyA+ RNAclone-free3Alignments085WCRHS015wgEncodeEH002926  Illumina HiSeq 20001.7 GBbam2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6234; tableName=wgEncodeGisRnaPetSknshCellPapAlnRep3; md5sum=3abe63a1fb584354ec9b3fe0d4816418;
SK-N-SHcellLong PolyA+ RNAclone-free3FastqRd1085WCRHS015wgEncodeEH002926GSM1006910Illumina HiSeq 20001.4 GBfastq2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6234; md5sum=10a04f8aaac77dd0c95c5f99154f26a2;
SK-N-SHcellLong PolyA+ RNAclone-free3FastqRd2085WCRHS015wgEncodeEH002926GSM1006910Illumina HiSeq 20001.4 GBfastq2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6234; md5sum=018df0bf60d5e64763cb95457052e0cf;
SK-N-SHcellLong PolyA+ RNAclone-free3Minus Raw signal085WCRHS015wgEncodeEH002926GSM1006910Illumina HiSeq 2000 14 MBbigWig2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6234; tableName=wgEncodeGisRnaPetSknshCellPapMinusRawRep3; md5sum=ceba74b3bc5d6be1f31ebbeebee6f582;
SK-N-SHcellLong PolyA+ RNAclone-free3Plus Raw signal085WCRHS015wgEncodeEH002926GSM1006910Illumina HiSeq 2000 14 MBbigWig2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6234; tableName=wgEncodeGisRnaPetSknshCellPapPlusRawRep3; md5sum=cc4ee85c657d319f9415ddef7a3f6f2d;
SK-N-SHcellLong PolyA+ RNAclone-free4Alignments086WCRHS016wgEncodeEH002926  Illumina HiSeq 20001.8 GBbam2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6236; tableName=wgEncodeGisRnaPetSknshCellPapAlnRep4; md5sum=c637bf532ae67265474f21f810effc84;
SK-N-SHcellLong PolyA+ RNAclone-free4FastqRd1086WCRHS016wgEncodeEH002926GSM1006910Illumina HiSeq 20001.5 GBfastq2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6236; md5sum=5b63acc9d3114b5adac33a49e64c73da;
SK-N-SHcellLong PolyA+ RNAclone-free4FastqRd2086WCRHS016wgEncodeEH002926GSM1006910Illumina HiSeq 20001.4 GBfastq2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6236; md5sum=af6057a960aaa679a7d6fdbbd06e68da;
SK-N-SHcellLong PolyA+ RNAclone-free4Minus Raw signal086WCRHS016wgEncodeEH002926GSM1006910Illumina HiSeq 2000 15 MBbigWig2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6236; tableName=wgEncodeGisRnaPetSknshCellPapMinusRawRep4; md5sum=cacc867f656b84bd48f72f9d35e55e06;
SK-N-SHcellLong PolyA+ RNAclone-free4Plus Raw signal086WCRHS016wgEncodeEH002926GSM1006910Illumina HiSeq 2000 15 MBbigWig2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6236; tableName=wgEncodeGisRnaPetSknshCellPapPlusRawRep4; md5sum=11dc9961e8ef2eda1d806ae3fb7a003a;
SK-N-SHcellLong PolyA+ RNAclone-free  Clusters085WC,086WCRHS015,RHS016wgEncodeEH002926GSM1006910Illumina HiSeq 20003.1 MBbedCluster2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-06-29; subId=7270; tableName=wgEncodeGisRnaPetSknshCellPapClusters; md5sum=e83f2760b330f08d0907be1d11cc769e;
SK-N-SHcellLong PolyA+ RNAclone-free4Alignments086WCRHS016wgEncodeEH002926  Illumina HiSeq 20004.1 MBbam.bai2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6236; tableName=wgEncodeGisRnaPetSknshCellPapAlnRep4; md5sum=2f9d4f859ad4895c990f4ef5c33d1aa0;
SK-N-SHcytosolLong PolyA+ RNAclone-free3Alignments085CRHS017wgEncodeEH002925  Illumina HiSeq 20004.2 MBbam.bai2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6233; tableName=wgEncodeGisRnaPetSknshCytosolPapAlnRep3; md5sum=77f6df953ec8e698ca470f21237c2190;
SK-N-SHcytosolLong PolyA+ RNAclone-free3Alignments085CRHS017wgEncodeEH002925  Illumina HiSeq 20001.6 GBbam2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6233; tableName=wgEncodeGisRnaPetSknshCytosolPapAlnRep3; md5sum=3c4d5b02df0a4850c1c5ac5c5d01c2ff;
SK-N-SHcytosolLong PolyA+ RNAclone-free3FastqRd1085CRHS017wgEncodeEH002925GSM1006907Illumina HiSeq 20001.4 GBfastq2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6233; md5sum=d349a414b6463655257997e472833808;
SK-N-SHcytosolLong PolyA+ RNAclone-free3FastqRd2085CRHS017wgEncodeEH002925GSM1006907Illumina HiSeq 20001.3 GBfastq2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6233; md5sum=cbaf46d2e28eaef63b076cd184b6321b;
SK-N-SHcytosolLong PolyA+ RNAclone-free3Minus Raw signal085CRHS017wgEncodeEH002925GSM1006907Illumina HiSeq 2000 16 MBbigWig2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6233; tableName=wgEncodeGisRnaPetSknshCytosolPapMinusRawRep3; md5sum=445087e435232f2feef85a922af137a7;
SK-N-SHcytosolLong PolyA+ RNAclone-free3Plus Raw signal085CRHS017wgEncodeEH002925GSM1006907Illumina HiSeq 2000 16 MBbigWig2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6233; tableName=wgEncodeGisRnaPetSknshCytosolPapPlusRawRep3; md5sum=816b437e91b912a31b6e1cd5fd8c70dc;
SK-N-SHcytosolLong PolyA+ RNAclone-free4Alignments086CRHS018wgEncodeEH002925  Illumina HiSeq 20004.0 MBbam.bai2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6235; tableName=wgEncodeGisRnaPetSknshCytosolPapAlnRep4; md5sum=5006111f9b0d4c6b7b4042368ba38d1c;
SK-N-SHcytosolLong PolyA+ RNAclone-free4Alignments086CRHS018wgEncodeEH002925  Illumina HiSeq 20001.7 GBbam2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6235; tableName=wgEncodeGisRnaPetSknshCytosolPapAlnRep4; md5sum=52e859ee9a4b85f6fdf6b0c8ed4b4f97;
SK-N-SHcytosolLong PolyA+ RNAclone-free4FastqRd1086CRHS018wgEncodeEH002925GSM1006907Illumina HiSeq 20001.5 GBfastq2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6235; md5sum=bb70ff63a5b2626f9bfb2123311ab350;
SK-N-SHcytosolLong PolyA+ RNAclone-free4FastqRd2086CRHS018wgEncodeEH002925GSM1006907Illumina HiSeq 20001.4 GBfastq2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6235; md5sum=8ffd49094e03aa343d0e48b060159750;
SK-N-SHcytosolLong PolyA+ RNAclone-free4Minus Raw signal086CRHS018wgEncodeEH002925GSM1006907Illumina HiSeq 2000 14 MBbigWig2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6235; tableName=wgEncodeGisRnaPetSknshCytosolPapMinusRawRep4; md5sum=e330d3fe393d4db2ca5c66325d4ed0a9;
SK-N-SHcytosolLong PolyA+ RNAclone-free4Plus Raw signal086CRHS018wgEncodeEH002925GSM1006907Illumina HiSeq 2000 14 MBbigWig2012-03-232012-12-23readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6235; tableName=wgEncodeGisRnaPetSknshCytosolPapPlusRawRep4; md5sum=70411a1c7c75a0318cbe11c0270900ee;
SK-N-SHcytosolLong PolyA+ RNAclone-free  Clusters085C,086CRHS017,RHS018wgEncodeEH002925GSM1006907Illumina HiSeq 20003.0 MBbedCluster2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-06-29; subId=7268; tableName=wgEncodeGisRnaPetSknshCytosolPapClusters; md5sum=2e4a119208b6ac9dcf01d99f9aab944c;
SK-N-SHnucleusLong PolyA+ RNAclone-free3Alignments085NRHS019wgEncodeEH002935  Illumina HiSeq 20004.4 MBbam.bai2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6413; tableName=wgEncodeGisRnaPetSknshNucleusPapAlnRep3; md5sum=b74fdac20250028ef26afb6e4bea23f1;
SK-N-SHnucleusLong PolyA+ RNAclone-free3Alignments085NRHS019wgEncodeEH002935  Illumina HiSeq 20003.6 GBbam2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6413; tableName=wgEncodeGisRnaPetSknshNucleusPapAlnRep3; md5sum=93b947b661ecfd029225651b45be81db;
SK-N-SHnucleusLong PolyA+ RNAclone-free3FastqRd1085NRHS019wgEncodeEH002935GSM1006906Illumina HiSeq 20003.0 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6413; md5sum=822858501aaf49faa18900ba2befe6e3;
SK-N-SHnucleusLong PolyA+ RNAclone-free3FastqRd2085NRHS019wgEncodeEH002935GSM1006906Illumina HiSeq 20002.9 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6413; md5sum=7525f58b8cfbfc649775fe56ed62a0d0;
SK-N-SHnucleusLong PolyA+ RNAclone-free3Minus Raw signal085NRHS019wgEncodeEH002935GSM1006906Illumina HiSeq 2000 19 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6413; tableName=wgEncodeGisRnaPetSknshNucleusPapMinusRawRep3; md5sum=2579fb9bd0f5a07fc430001bc0a765fe;
SK-N-SHnucleusLong PolyA+ RNAclone-free3Plus Raw signal085NRHS019wgEncodeEH002935GSM1006906Illumina HiSeq 2000 19 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6413; tableName=wgEncodeGisRnaPetSknshNucleusPapPlusRawRep3; md5sum=738f5c5b04374f2132330ad11e72b7ac;
SK-N-SHnucleusLong PolyA+ RNAclone-free4Alignments086NRHS020wgEncodeEH002935  Illumina HiSeq 20003.9 MBbam.bai2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6411; tableName=wgEncodeGisRnaPetSknshNucleusPapAlnRep4; md5sum=24efc785bc877cb56dd55cc613a00f01;
SK-N-SHnucleusLong PolyA+ RNAclone-free4Alignments086NRHS020wgEncodeEH002935  Illumina HiSeq 20003.5 GBbam2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6411; tableName=wgEncodeGisRnaPetSknshNucleusPapAlnRep4; md5sum=c52fe1b870e579da294e039a72ba3a21;
SK-N-SHnucleusLong PolyA+ RNAclone-free4FastqRd1086NRHS020wgEncodeEH002935GSM1006906Illumina HiSeq 20003.0 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6411; md5sum=ca3f35e8f553081d794a7e8f5fba044c;
SK-N-SHnucleusLong PolyA+ RNAclone-free4FastqRd2086NRHS020wgEncodeEH002935GSM1006906Illumina HiSeq 20002.8 GBfastq2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6411; md5sum=54dfecaaeb1c31cde353afd48e4b1b80;
SK-N-SHnucleusLong PolyA+ RNAclone-free4Minus Raw signal086NRHS020wgEncodeEH002935GSM1006906Illumina HiSeq 20009.3 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6411; tableName=wgEncodeGisRnaPetSknshNucleusPapMinusRawRep4; md5sum=7473e4548a38bc2ae1fac86241cf9ba7;
SK-N-SHnucleusLong PolyA+ RNAclone-free4Plus Raw signal086NRHS020wgEncodeEH002935GSM1006906Illumina HiSeq 20009.3 MBbigWig2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Mar 2012 Freeze; subId=6411; tableName=wgEncodeGisRnaPetSknshNucleusPapPlusRawRep4; md5sum=e0120f6ed47a3b699908a0119723a6d3;
SK-N-SHnucleusLong PolyA+ RNAclone-free  Clusters085N,086NRHS019,RHS020wgEncodeEH002935GSM1006906Illumina HiSeq 20002.6 MBbedCluster2012-03-272012-12-27readType=2x36; dataVersion=ENCODE Jul 2012 Freeze; dateResubmitted=2012-06-29; subId=7275; tableName=wgEncodeGisRnaPetSknshNucleusPapClusters; md5sum=cdcaa6fc46640cd38a459e2558e1d74c;
ProstatecellLong PolyA+ RNAclone-based1Alignmentsgen0160WCDHP001wgEncodeEH000262  Illumina Genome Analyzer II3.9 MBbam.bai2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-22; subId=1989; tableName=wgEncodeGisRnaPetProstateCellPapAlnRep1; md5sum=3c079c3be9664c75627f4b0e79c4ed80;
ProstatecellLong PolyA+ RNAclone-based1Alignmentsgen0160WCDHP001wgEncodeEH000262  Illumina Genome Analyzer II 33 MBbam2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-22; subId=1989; tableName=wgEncodeGisRnaPetProstateCellPapAlnRep1; md5sum=2b35614e74d2a5a1127d984740fc210e;
ProstatecellLong PolyA+ RNAclone-based1Clustersgen0160WCDHP001wgEncodeEH000262GSM830520Illumina Genome Analyzer II1001 KBbed2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-03-08; subId=1989; tableName=wgEncodeGisRnaPetProstateCellPapClustersRep1; md5sum=75ca48713aa261be31525b68a33181be;
ProstatecellLong PolyA+ RNAclone-based1FastqRd1gen0160WCDHP001wgEncodeEH000262GSM830520Illumina Genome Analyzer II109 MBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-17; subId=778; md5sum=d3d270b6d0d0a6ef995eff021b192170;
ProstatecellLong PolyA+ RNAclone-based1FastqRd2gen0160WCDHP001wgEncodeEH000262GSM830520Illumina Genome Analyzer II124 MBfastq2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2010 Freeze; dateResubmitted=2009-11-17; subId=778; md5sum=012910ec5fc11f4a25dd0c1cc10d8cb4;
ProstatecellLong PolyA+ RNAclone-based1Minus Raw signalgen0160WCDHP001wgEncodeEH000262GSM830520Illumina Genome Analyzer II 14 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-22; subId=1989; tableName=wgEncodeGisRnaPetProstateCellPapMinusRawSigRep1; md5sum=e9d6ba8c32c3d56ef6d23ffbf8143b8c;
ProstatecellLong PolyA+ RNAclone-based1Plus Raw signalgen0160WCDHP001wgEncodeEH000262GSM830520Illumina Genome Analyzer II 14 MBbigWig2009-11-132010-08-13readType=2x36; origAssembly=hg18; dataVersion=ENCODE Jan 2011 Freeze; dateResubmitted=2010-07-22; subId=1989; tableName=wgEncodeGisRnaPetProstateCellPapPlusRawSigRep1; md5sum=5c16509331a37e16c739fcf86fbf7652;
    294 filesRestriction Policy

Description

This track was produced as part of the ENCODE Transcriptome Project and shows the starts and ends of full-length mRNA transcripts determined by Gene Identification Signature (GIS) paired-end ditag (PET) sequencing using RNA extracts from different sub-cellular localizations in different cell lines. Short tags used in GIS-PET sequencing provide signatures of the 5' start and the 3' end of individual mRNA transcripts, thus demarcating the first and last exon, and contain enough coding information to map the tags uniquely to the genome, in turn making it possible to identify unconventional fusion transcripts. These 5' and 3' paired-end tags extracted by restriction enzyme are ligated together to form a ditag for sequencing, where the 3' end includes two adenine bases from the polyA tail thereby reducing the relative amount of unique sequence. The RNA-PET information provided in this track is composed of two different PET length versions based on how the PETs were extracted using different restriction enzymes. The cloning-based PET method (18 bp and 16 bp for each of the 5' and 3' ends) is an earlier version (Ng et al., 2006). While the cloning-free PET approach (27 bp and 25 bp for each of the 5' and 3' ends) is a recently modified version which uses Type III restriction enzyme EcoP15I to generate a longer length of PET (Ruan and Ruan, 2012), which results in a significant enhancement in both library construction and mapping efficiency. Both versions of PET templates were sequenced by Illumina platform at 2 x 36 bp paired-end sequencing. See the Methods and References sections below for more details.

Display Conventions and Configuration

This track is a multi-view composite track that contains multiple data types (views). For each view, there are multiple subtracks that display individually on the browser. Instructions for configuring multi-view tracks are here. Color differences among the views are arbitrary. They provide a visual cue for distinguishing between the different cell types and compartments.

Clusters
The Clusters view shows clusters built from the alignments. In the graphical display, the ends are represented by blocks connected by a horizontal line. In full and packed display modes, the arrowheads on the horizontal line represent the direction of transcription. Although some of the subtracks have score information most of them do not and score filtering has been disabled.
Plus Raw Signal
The Plus Raw Signal view graphs the base-by-base density of tags on the forward strand.
Minus Raw Signal
The Minus Raw Signal view graphs the base-by-base density of tags on the reverse strand.
Alignments
The Alignments view shows alignment of individual PET sequences. The alignment file follows the standard SAM/BAM format indicated in the SAM Format Specification. Some files also use the tag XA, generated by Bowtie, to represent the total number of mismatches in the tag.

Metadata for a particular subtrack can be found by clicking the down arrow in the list of subtracks.

Methods

Cells were grown according to the approved ENCODE cell culture protocols. Two different GIS RNA-PET protocols were used to generate the full-length transcriptome PETs: one is based on a cloning-free RNA-PET library construction and sequencing strategy (Ruan and Ruan, 2012), and the other is a cloning-based library construction (Ng et al., 2005) and recent Illumina paired-end sequencing.

Cloning-free RNA-PET (52 bp reads, 27 bp and 25 bp tag for each of the 5' and 3' ends)

Method: The cloning-free RNA-PET libraries were generated from polyA mRNA samples and constructed using a recently modified GIS protocol (Ruan and Ruan, 2012). High quality total RNA was used as starting material and purified with a MACs polyT column to obtain full-length polyA mRNAs. Approximately 5 µgrams of enriched polyA mRNA was used for reverse transcription to convert polyA mRNA to full-length cDNA. Specific linker sequences were ligated to the full-length cDNA. The modified cDNA was circularized by ligation generating circular cDNA molecules. The 27 bp tag from each end of the full-length cDNA was extracted by type III enzyme EcoP15I digestion. The resulting PETs were ligated with sequencing adaptors at both ends, amplified by PCR, and further purified as complex templates for paired-end sequencing using Illumina platforms.

Data: The sequenced RNA-PETs resulted in reads of 27 bp and 25 bp corresponding to the 5' and 3' end of each cDNA, respectively. Redundant and noisy reads were excluded from downstream analysis. Strand-specific orientation of each PET was determined using the barcode built into the sequencing template. The oriented RNA-PET was mapped onto the reference genome allowing up to two mismatches. The majority of the PETs mapped to known transcripts. A small portion of misaligned PETs, defined as discordant PETs, mapped too far from each tag, with wrong orientations, or to different chromosomes. These discordant PETs indicated the existence of some transcription variants that could be caused by genomic structural variants such as fusions, deletions, insertions, inversions, tandem repeats, translocations or RNA trans-splicing etc.

Cloning-based RNA-PET (34 bp reads, 18 bp and 16 bp tag for each of the 5' and 3' ends)

Method: The cloning-based RNA-PET (GIS-PET) libraries were generated from polyA RNA samples and constructed using the protocol described by Ng et al., 2005. Total RNA in good quality was used as starting material and further purified with a MACs polyT column to enrich polyA mRNA. Approximately 10 µgrams of polyA enriched mRNA was reverse transcribed resulting in full-length cDNA. The obtained full-length cDNA was modified with specific linker sequences and ligated to a GIS-developed (pGIS4) vector. The resulting plasmids form a complex full-length cDNA library, which was cloned into E. coli. The plasmid DNA was then isolated from the library, followed by MmeI (a type II enzyme) digestion to generate a final length of 18 bp/16 bp ditags from each end of the full-length cDNA. The single ditag (or PET) was then ligated to form a diPET structure (a concatemer with two unrelated PET linked by a linker sequence) to facilitate Illumina paired-end sequencing.

Data:Sequencing of clone-based RNA-PETs resulted in paired reads of 18 bp and 16 bp corresponding to the 5' and 3' end of each cDNA, respectively. The redundant reads were filtered out and unique reads were included for analysis. PET sequences were then mapped to (GRCh37, hg19, excluding mitochondrion, haplotypes, randoms and chromosome Y) reference genome using the following specific criteria (Ruan et al., 2007):

  • A minimal continuous 16 bp match must exist for the 5' signature; the 3' signature must have a minimal continuous 14 bp match
  • Both 5' and 3' signatures must be present on the same chromosome
  • Their 5' to 3' orientation must be correct (5' signature followed by 3' signature)
  • The maximal genomic span of a PET genomic alignment must be less than one million bp

PETs mapping to 2-10 locations are also included and may represent duplicated genes or pseudogenes in the genome. A majority of the PETs mapped to known transcripts or splice variants. A small portion of misaligned PETs, defined as discordant PETs, mapped either too far from each other, in the wrong orientation, or to different chromosomes. The presence of discordant PETs indicates that some transcriptional variants exist. These variants could be caused by genomic structural variants such as fusions, deletions, insertions, inversions, tandem repeats, translocation or RNA trans-splicing etc.

Clusters

PETs were clustered using the following procedure. The mapping location of the 5' and 3' tag of a given PET was extended by 100 bp in both directions creating 5' and 3' search windows. If the 5' and 3' tags of a second PET mapped within the 5' and 3' search window of the first PET then the two PETs were clustered and the search windows were adjusted so that they contained the tag extensions of the second PET. PETs which subsequently mapped with their 5' and 3' tags within the adjusted 5' and 3' search window, respectively, were also assigned to this cluster and the search window was readjusted. This iterative process continued until no new PETs fell within the search window. This process is repeated until all PETs were assigned to a cluster.

The total count of PET sequences mapped to the same locus but with slight nucleotide differences may reflect the expression level of the transcripts. PETs that mapped to multiple locations may represent low complexity or repetitive sequences.

Verification

To assess overall PET quality and mapping specificity, the top ten most abundant PET clusters that mapped to well-characterized known genes were examined. Over 99% of the PETs represented full-length transcripts, and the majority fell within 10 bp of the known 5' and 3' boundaries of these transcripts. The PET mapping was further verified by confirming the existence of physical cDNA clones represented by the ditags. PCR primers were designed based on the PET sequences and amplified the corresponding cDNA inserts either from full-length cDNA library (cloning-based PET) or from isolated total RNA (cloning-free PET) for sequencing confirmation.

Release Notes

This is Release 2 (Aug 2012) of this track. It adds data for tier 2 cell lines (A549, SK-N-SH, IMR90, and MCF-7). This newer data has no scores in the Clusters files.

Note: As mentioned above, this track mixes two different methodologies. The clone-based data has functioning score fields in the Cluster files which could be used for filtering or shading. However, the clone-free data either has scores that are not scaled well or scores that are set to zero for all items. Therefore, the scores are useful for some tables and not for others.

Credits

The GIS RNA-PET libraries and sequence data for transcriptome analysis were generated and analyzed by scientists Xiaoan Ruan, Atif Shahab, Chialin Wei, and Yijun Ruan at the Genome Institute of Singapore.

Contact: Yijun Ruan

References

Ng P, Tan JJ, Ooi HS, Lee YL, Chiu KP, Fullwood MJ, Srinivasan KG, Perbost C, Du L, Sung WK, et al., Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes. Nucleic Acids Res. 2006;34:e84.

Ng P, Wei CL, Sung WK, Chiu KP, Lipovich L, Ang CC, Gupta S, Shahab A, Ridwan A, Wong CH, et al., Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation. Nat Methods. 2005;2:105-111.

Ng P, Wei CL, Ruan Y, Paired-end diTagging for transcriptome and genome analysis. Curr Protoc Mol Biol. 2007 Jul 21.12.

Ruan Y, Ooi HS, Choo SW, Chiu KP, Zhao XD, Srinivasan KG, Yao F, Choo CY, Liu J, Ariyaratne P, et al., Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs). Genome Res. 2007;17:828-838.

Ruan X and Ruan Y, Genome wide full-length transcript analysis using 5' and 3' paired-end-tag next generation sequencing (RNA-PET). Methods Mol Biol. 2012;809:535-62.

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