This tool converts genome coordinates and annotation files between assemblies. The input data can be entered into the text box or uploaded as a file. For files over 500Mb, use the command-line tool described in our LiftOver documentation. If a pair of assemblies cannot be selected from the pull-down menus, a sequential lift may still be possible (e.g., mm9 to mm10 to mm39). If your desired conversion is still not available, please contact us.
Command Line Tool
To lift genome annotations locally on Linux systems, download the LiftOver executable and the appropriate chain file. Run liftOver with no arguments to see the usage message.
See the LiftOver documentation.