Public Sessions
 

Sessions allow users to save snapshots of the Genome Browser and its current configuration, including displayed tracks, position, and custom track data. The Public Sessions tool allows users to easily share those sessions that they deem interesting with the rest of the world's researchers. You can add your own sessions to this list by checking the appropriate box on the Session Management page.

See the Sessions User's Guide for more information.

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Screenshot Session Properties Creation Date Use Count
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Description:
Author: zzhmark
Session Name: germlayer_enh
Genome Assembly: mm10
Creation Date: 2021-03-14
Views: 36
1615647600 36
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Description:
Author: chenchuanhuizi
Session Name: TP53
Genome Assembly: hg38
Creation Date: 2021-03-05
Views: 57
1614870000 57
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Description:
Author: Aragon
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2021-02-12
Views: 32
1613055600 32
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Description:
Author: Aragon
Session Name: hg19_joydip
Genome Assembly: hg19
Creation Date: 2021-02-12
Views: 35
1613055600 35
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Description:
Author: SAYANTANI SANTRA
Session Name: hg19 8-2-21
Genome Assembly: hg19
Creation Date: 2021-02-08
Views: 26
1612710000 26
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Description:
Author: Prabuddha
Session Name: hg19 class 05-02-21a
Genome Assembly: hg19
Creation Date: 2021-02-05
Views: 33
1612450800 33
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Description: class work
Author: Prabuddha
Session Name: hg19 class 05-02-21
Genome Assembly: hg19
Creation Date: 2021-02-05
Views: 135
1612450800 135
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Description:
Author: akhileshwar_namani@yahoo.co.in
Session Name: TXA549CHIPSEQ
Genome Assembly: hg19
Creation Date: 2021-01-17
Views: 29
1610809200 29
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Description:
Author: Shadab79
Session Name: shadab
Genome Assembly: hg19
Creation Date: 2020-07-20
Views: 90
1595170800 90
Description:
Author: lkh
Session Name: pol2_subunits
Genome Assembly: mm10
Creation Date: 2019-11-21
Views: 184
1574262000 184
Description:
Author: jieMM
Session Name: hg38_FINAL
Genome Assembly: hg38
Creation Date: 2019-11-05
Views: 474
1572879600 474
Description: The latest version of imomdb data, uploaded on April 2020
Author: imomdb
Session Name: imomdb_v0
Genome Assembly: hg19
Creation Date: 2020-04-15
Views: 95
1586876400 95
Description:
Author: QAtester2
Session Name: hg18_SNP
Genome Assembly: hg18
Creation Date: 2019-08-01
Views: 149
1564585200 149
Description:
Author: brianlee
Session Name: hg38_test
Genome Assembly: hg38
Creation Date: 2019-06-11
Views: 156
1560178800 156
Description:
Author: geneHunter23
Session Name: hg19Default
Genome Assembly: hg19
Creation Date: 2019-06-11
Views: 152
1560178800 152
Description:
Author: Lou
Session Name: bosTau9_Interesting
Genome Assembly: bosTau9
Creation Date: 2019-06-08
Views: 164
1559919600 164
Description: This is an interact track type using GeneHancer data.
Author: brianlee
Session Name: InteractSession
Genome Assembly: hg38
Creation Date: 2019-06-07
Views: 162
1559833200 162
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Description:
Author: XinDong
Session Name: TAD_with_Hsitone_and_RNAseq
Genome Assembly: hg38
Creation Date: 2019-03-25
Views: 152
1553439600 152
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Description:
Author: pdl.tyh
Session Name: hg19_PDL CNV analysis
Genome Assembly: hg19
Creation Date: 2018-12-29
Views: 155
1546009200 155
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Description:
Author: QAtester3
Session Name: genomeAsia
Genome Assembly: hub_80308_linHum0
Creation Date: 2018-12-22
Views: 172
1545404400 172
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Description:
Author: malaysia2018
Session Name: hg19_UPD2
Genome Assembly: hg19
Creation Date: 2018-08-29
Views: 138
1535468400 138
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Description:
Author: malaysia2018
Session Name: hg19_UPD
Genome Assembly: hg19
Creation Date: 2018-08-29
Views: 178
1535468400 178
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Description:
Author: maskyjg
Session Name: hg19_TRPS1_ChIPSeq
Genome Assembly: hg38
Creation Date: 2018-08-08
Views: 132
1533654000 132
Description:
Author: lipan
Session Name: hg38_dynamics
Genome Assembly: hg38
Creation Date: 2018-07-13
Views: 655
1531407600 655
Description:
Author: lipan
Session Name: mm10_dynamics
Genome Assembly: mm10
Creation Date: 2018-07-13
Views: 401
1531407600 401
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Description:
Author: Lin Xia
Session Name: hg19 HEK293T
Genome Assembly: hg19
Creation Date: 2018-05-10
Views: 165
1525878000 165
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Description:
Author: cehnouz
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2017-08-25
Views: 143
1503586800 143
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Description: We have recently released a file type called "longTabix" which supports inter & intra-chromosomal interactions by drawing an "arc" among paired regions in the UCSC Genome Browser. Note the first track at the top of the display, you can click on any of the "arcs" or interaction connections to see details such as ID and score. Credit goes to Cath Tyner for the creation of this session. Link to the original question: https://groups.google.com/a/soe.ucsc.edu/d/msg/genome/kE2pIZUvfnA/jfopk7pFAQAJ
Author: PublicSessions
Session Name: Viewing inter- & intra-chromosomal interactions
Genome Assembly: hg19
Creation Date: 2017-03-22
Views: 150
1490108400 150
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Description:
Author: vivekgopalanmedgenome
Session Name: MSH3_DHFR_region2
Genome Assembly: hg19
Creation Date: 2016-09-21
Views: 176
1474383600 176
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Description:
Author: vivekgopalanmedgenome
Session Name: MSH3_DHFR_region1
Genome Assembly: hg19
Creation Date: 2016-09-21
Views: 181
1474383600 181
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Description:
Author: vivekgopalanmedgenome
Session Name: MSH3_DHFR_region
Genome Assembly: hg19
Creation Date: 2016-09-21
Views: 161
1474383600 161
Description: This session demonstrates the GTEx track on the human assembly hg19. The GTEx track shows data from the NIH Genotype-Tissue Expression project and displays expression data for each gene, based on GENCODE gene models, from 51 tissues collected from 570 individual. This session also demonstrates the gene-only mode of the multi-region feature, which removes intergenic regions from the display.
Author: mspeir
Session Name: hg19_gtexAnnouncement
Genome Assembly: hg19
Creation Date: 2016-06-24
Views: 188
1466694000 188
Description: Session highlights a mouse-specific repeat on chromosome 12. You can see the gap in the 60-way vertebrate alignment surrounding the repeat, which is highlighted in light blue. The repeat is classified as a LINE and is part of the L1 family of repeats. Additionally, on the far right-hand side of the display, you can see the retrotransposed Bf3 gene.
Author: mspeir
Session Name: mm10_MouseSpecificRepeat_plus_RetroposedGene
Genome Assembly: mm10
Creation Date: 2016-05-24
Views: 185
1464015600 185
Description: Session displays the promoter region of DARC on human assembly hg19 including UCSC Genes, dbSNP 146 (Common subset) and the Publications track showing sequences and SNPs text-mined from PubMed Central and Elsevier. Adapted from Figure 1 in Meyer, et al. The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res. 2013 Jan;41(Database issue):D64-9: http://nar.oxfordjournals.org/content/41/D1/D64.long.
Author: mspeir
Session Name: hg19_NAR_2013_Fig1
Genome Assembly: hg19
Creation Date: 2016-05-24
Views: 170
1464015600 170
Description: Session displays the dyskeratosis congenita 1 (DKC1) gene using the exon-only multi-region mode in the human assembly hg38. Alongside the gene structure, tracks displaying dbSNP "flagged" variants, OMIM clinical variants, ENCODE transcription levels from 9 cell lines, a 100-way vertebrate alignment (only a subset of species displayed), and conservation scores calculated using phyloP across this 100-way alignment.
Author: mspeir
Session Name: hg38_DKC1_SNPs_Cons_Transcription
Genome Assembly: hg38
Creation Date: 2016-05-24
Views: 158
1464015600 158
Description: Session displays the promoter region and transcription start of IRF1 on human assembly hg19 showing UCSC Genes, 1000 Genomes Phase 3 Integrated Variant Calls in the haplotype sorting VCF display mode, histone mark H3K27Ac binding in overlays of 7 ENCODE cell lines and PhyloP conservation scores from alignments of 100 vertebrates. Adapted from Figure 2 in Meyer, et al. The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res. 2013 Jan;41(Database issue):D64-9: http://nar.oxfordjournals.org/content/41/D1/D64.long.
Author: mspeir
Session Name: hg19_NAR_2013_Fig2
Genome Assembly: hg19
Creation Date: 2016-05-24
Views: 250
1464015600 250
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Description:
Author: lijin
Session Name: session6 lung specific enhancer example
Genome Assembly: hg19
Creation Date: 2016-04-29
Views: 150
1461855600 150
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Description:
Author: lijin
Session Name: session2 four types
Genome Assembly: hg19
Creation Date: 2016-04-17
Views: 128
1460818800 128
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Description:
Author: lijin
Session Name: test
Genome Assembly: hg19
Creation Date: 2016-04-16
Views: 123
1460732400 123
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Description:
Author: lijin
Session Name: session5 whole genome methy
Genome Assembly: hg19
Creation Date: 2016-04-29
Views: 143
1461855600 143
Description:
Author: mspeir
Session Name: hg19_CAGrepeat
Genome Assembly: hg19
Creation Date: 2016-06-21
Views: 145
1466434800 145
Description:
Author: mspeir
Session Name: hg19_wobble
Genome Assembly: hg19
Creation Date: 2016-06-21
Views: 188
1466434800 188
Description: This session is demonstrating the exon-only mode of the multi-region feature. The exon-only mode uses the GENCODE v22 track to slice up the normal display and remove both intronic and intergenic regions from the display. Only those regions covered by exons, both coding and noncoding, are left in the display. For more on the multi-region display see the user guide: http://genome.ucsc.edu/goldenPath/help/multiRegionHelp.html.
Author: mspeir
Session Name: hg38_exonOnlyExample
Genome Assembly: hg38
Creation Date: 2016-06-21
Views: 153
1466434800 153
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Description:
Author: lijin
Session Name: session1 Liver 97L exp meth
Genome Assembly: hg19
Creation Date: 2016-04-17
Views: 125
1460818800 125
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Description:
Author: lijin
Session Name: session4 plus h3k27ac density andpeaks
Genome Assembly: hg19
Creation Date: 2016-04-28
Views: 124
1461769200 124
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Description:
Author: lijin
Session Name: session3 plus h3k27ac
Genome Assembly: hg19
Creation Date: 2016-04-28
Views: 115
1461769200 115
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Description:
Author: ARKLAB_iwoo
Session Name: arklab_hg19_hemo_demonstration
Genome Assembly: hg19
Creation Date: 2017-03-31
Views: 242
1490886000 242
Description: This session displays a region of the LHX6 gene that highlights a selection of the new tracks added in the previous year for the hg38/GRCh38 human assembly. The tracks shown in this display (from top to bottom) include GENCODE Genes V22, transcription levels assayed across 9 ENCODE cell lines, DNase hypersensitive regions based on data from 95 ENCODE cell lines, genome-wide conservation scores calculated using phastCons, a multiple genome alignment created using Lastz and Multiz, and pathogenic CNVs from the ClinGen database. Adapted from Figure 1 in Speir, et al. The UCSC Genome Browser database: 2016 update. Nucleic Acids Res. 2016 Jan 4;44(D1):D717-25: http://nar.oxfordjournals.org/content/44/D1/D717.full
Author: mspeir
Session Name: hg38_NAR_2016_Fig1
Genome Assembly: hg38
Creation Date: 2015-08-11
Views: 174
1439218800 174