Public Sessions
 

Sessions allow users to save snapshots of the Genome Browser and its current configuration, including displayed tracks, position, and custom track data. The Public Sessions tool allows users to easily share those sessions that they deem interesting with the rest of the world's researchers. You can add your own sessions to this list by checking the appropriate box on the Session Management page.

See the Sessions User's Guide for more information.

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Screenshot Session Properties Creation Date Use Count
Description:
Author: BowenYang
Session Name: part 4
Genome Assembly: hg19
Creation Date: 2021-08-31
Views: 10
1630335600 10
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Description:
Author: zzhmark
Session Name: germlayer_enh
Genome Assembly: mm10
Creation Date: 2021-03-14
Views: 63
1615647600 63
Screenshot not available
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Description:
Author: chenchuanhuizi
Session Name: TP53
Genome Assembly: hg38
Creation Date: 2021-03-05
Views: 83
1614870000 83
Screenshot not available
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Description:
Author: Aragon
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2021-02-12
Views: 51
1613055600 51
Screenshot not available
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Description:
Author: Aragon
Session Name: hg19_joydip
Genome Assembly: hg19
Creation Date: 2021-02-12
Views: 60
1613055600 60
Screenshot not available
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Description:
Author: SAYANTANI SANTRA
Session Name: hg19 8-2-21
Genome Assembly: hg19
Creation Date: 2021-02-08
Views: 47
1612710000 47
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Description:
Author: Prabuddha
Session Name: hg19 class 05-02-21a
Genome Assembly: hg19
Creation Date: 2021-02-05
Views: 56
1612450800 56
Screenshot not available
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Description: class work
Author: Prabuddha
Session Name: hg19 class 05-02-21
Genome Assembly: hg19
Creation Date: 2021-02-05
Views: 158
1612450800 158
Screenshot not available
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Description:
Author: akhileshwar_namani@yahoo.co.in
Session Name: TXA549CHIPSEQ
Genome Assembly: hg19
Creation Date: 2021-01-17
Views: 51
1610809200 51
Screenshot not available
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Description:
Author: Shadab79
Session Name: shadab
Genome Assembly: hg19
Creation Date: 2020-07-20
Views: 119
1595170800 119
Description:
Author: lkh
Session Name: pol2_subunits
Genome Assembly: mm10
Creation Date: 2019-11-21
Views: 210
1574262000 210
Description:
Author: jieMM
Session Name: hg38_FINAL
Genome Assembly: hg38
Creation Date: 2019-11-05
Views: 504
1572879600 504
Description: The latest version of imomdb data, uploaded on April 2020
Author: imomdb
Session Name: imomdb_v0
Genome Assembly: hg19
Creation Date: 2020-04-15
Views: 118
1586876400 118
Description:
Author: QAtester2
Session Name: hg18_SNP
Genome Assembly: hg18
Creation Date: 2019-08-01
Views: 180
1564585200 180
Description:
Author: brianlee
Session Name: hg38_test
Genome Assembly: hg38
Creation Date: 2019-06-11
Views: 180
1560178800 180
Description:
Author: geneHunter23
Session Name: hg19Default
Genome Assembly: hg19
Creation Date: 2019-06-11
Views: 181
1560178800 181
Description:
Author: Lou
Session Name: bosTau9_Interesting
Genome Assembly: bosTau9
Creation Date: 2019-06-08
Views: 209
1559919600 209
Description: This is an interact track type using GeneHancer data.
Author: brianlee
Session Name: InteractSession
Genome Assembly: hg38
Creation Date: 2019-06-07
Views: 184
1559833200 184
Screenshot not available
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Description:
Author: XinDong
Session Name: TAD_with_Hsitone_and_RNAseq
Genome Assembly: hg38
Creation Date: 2019-03-25
Views: 181
1553439600 181
Screenshot not available
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Description:
Author: pdl.tyh
Session Name: hg19_PDL CNV analysis
Genome Assembly: hg19
Creation Date: 2018-12-29
Views: 179
1546009200 179
Screenshot not available
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Description:
Author: QAtester3
Session Name: genomeAsia
Genome Assembly: hub_80308_linHum0
Creation Date: 2018-12-22
Views: 192
1545404400 192
Screenshot not available
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Description:
Author: malaysia2018
Session Name: hg19_UPD2
Genome Assembly: hg19
Creation Date: 2018-08-29
Views: 165
1535468400 165
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Description:
Author: malaysia2018
Session Name: hg19_UPD
Genome Assembly: hg19
Creation Date: 2018-08-29
Views: 572
1535468400 572
Screenshot not available
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Description:
Author: maskyjg
Session Name: hg19_TRPS1_ChIPSeq
Genome Assembly: hg38
Creation Date: 2018-08-08
Views: 155
1533654000 155
Description:
Author: lipan
Session Name: hg38_dynamics
Genome Assembly: hg38
Creation Date: 2018-07-13
Views: 1013
1531407600 1013
Description:
Author: lipan
Session Name: mm10_dynamics
Genome Assembly: mm10
Creation Date: 2018-07-13
Views: 443
1531407600 443
Screenshot not available
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Description:
Author: Lin Xia
Session Name: hg19 HEK293T
Genome Assembly: hg19
Creation Date: 2018-05-10
Views: 191
1525878000 191
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Description:
Author: cehnouz
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2017-08-25
Views: 173
1503586800 173
Screenshot not available
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Description: We have recently released a file type called "longTabix" which supports inter & intra-chromosomal interactions by drawing an "arc" among paired regions in the UCSC Genome Browser. Note the first track at the top of the display, you can click on any of the "arcs" or interaction connections to see details such as ID and score. Credit goes to Cath Tyner for the creation of this session. Link to the original question: https://groups.google.com/a/soe.ucsc.edu/d/msg/genome/kE2pIZUvfnA/jfopk7pFAQAJ
Author: PublicSessions
Session Name: Viewing inter- & intra-chromosomal interactions
Genome Assembly: hg19
Creation Date: 2017-03-22
Views: 175
1490108400 175
Screenshot not available
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Description:
Author: vivekgopalanmedgenome
Session Name: MSH3_DHFR_region2
Genome Assembly: hg19
Creation Date: 2016-09-21
Views: 207
1474383600 207
Screenshot not available
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Description:
Author: vivekgopalanmedgenome
Session Name: MSH3_DHFR_region1
Genome Assembly: hg19
Creation Date: 2016-09-21
Views: 210
1474383600 210
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Description:
Author: vivekgopalanmedgenome
Session Name: MSH3_DHFR_region
Genome Assembly: hg19
Creation Date: 2016-09-21
Views: 182
1474383600 182
Description: This session demonstrates the GTEx track on the human assembly hg19. The GTEx track shows data from the NIH Genotype-Tissue Expression project and displays expression data for each gene, based on GENCODE gene models, from 51 tissues collected from 570 individual. This session also demonstrates the gene-only mode of the multi-region feature, which removes intergenic regions from the display.
Author: mspeir
Session Name: hg19_gtexAnnouncement
Genome Assembly: hg19
Creation Date: 2016-06-24
Views: 210
1466694000 210
Description: Session highlights a mouse-specific repeat on chromosome 12. You can see the gap in the 60-way vertebrate alignment surrounding the repeat, which is highlighted in light blue. The repeat is classified as a LINE and is part of the L1 family of repeats. Additionally, on the far right-hand side of the display, you can see the retrotransposed Bf3 gene.
Author: mspeir
Session Name: mm10_MouseSpecificRepeat_plus_RetroposedGene
Genome Assembly: mm10
Creation Date: 2016-05-24
Views: 203
1464015600 203
Description: Session displays the promoter region of DARC on human assembly hg19 including UCSC Genes, dbSNP 146 (Common subset) and the Publications track showing sequences and SNPs text-mined from PubMed Central and Elsevier. Adapted from Figure 1 in Meyer, et al. The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res. 2013 Jan;41(Database issue):D64-9: http://nar.oxfordjournals.org/content/41/D1/D64.long.
Author: mspeir
Session Name: hg19_NAR_2013_Fig1
Genome Assembly: hg19
Creation Date: 2016-05-24
Views: 199
1464015600 199
Description: Session displays the dyskeratosis congenita 1 (DKC1) gene using the exon-only multi-region mode in the human assembly hg38. Alongside the gene structure, tracks displaying dbSNP "flagged" variants, OMIM clinical variants, ENCODE transcription levels from 9 cell lines, a 100-way vertebrate alignment (only a subset of species displayed), and conservation scores calculated using phyloP across this 100-way alignment.
Author: mspeir
Session Name: hg38_DKC1_SNPs_Cons_Transcription
Genome Assembly: hg38
Creation Date: 2016-05-24
Views: 185
1464015600 185
Description: Session displays the promoter region and transcription start of IRF1 on human assembly hg19 showing UCSC Genes, 1000 Genomes Phase 3 Integrated Variant Calls in the haplotype sorting VCF display mode, histone mark H3K27Ac binding in overlays of 7 ENCODE cell lines and PhyloP conservation scores from alignments of 100 vertebrates. Adapted from Figure 2 in Meyer, et al. The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res. 2013 Jan;41(Database issue):D64-9: http://nar.oxfordjournals.org/content/41/D1/D64.long.
Author: mspeir
Session Name: hg19_NAR_2013_Fig2
Genome Assembly: hg19
Creation Date: 2016-05-24
Views: 277
1464015600 277
Screenshot not available
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Description:
Author: lijin
Session Name: session6 lung specific enhancer example
Genome Assembly: hg19
Creation Date: 2016-04-29
Views: 170
1461855600 170
Screenshot not available
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Description:
Author: lijin
Session Name: session2 four types
Genome Assembly: hg19
Creation Date: 2016-04-17
Views: 151
1460818800 151
Screenshot not available
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Description:
Author: lijin
Session Name: test
Genome Assembly: hg19
Creation Date: 2016-04-16
Views: 153
1460732400 153
Screenshot not available
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Description:
Author: lijin
Session Name: session5 whole genome methy
Genome Assembly: hg19
Creation Date: 2016-04-29
Views: 163
1461855600 163
Description:
Author: mspeir
Session Name: hg19_CAGrepeat
Genome Assembly: hg19
Creation Date: 2016-06-21
Views: 164
1466434800 164
Description:
Author: mspeir
Session Name: hg19_wobble
Genome Assembly: hg19
Creation Date: 2016-06-21
Views: 216
1466434800 216
Description: This session is demonstrating the exon-only mode of the multi-region feature. The exon-only mode uses the GENCODE v22 track to slice up the normal display and remove both intronic and intergenic regions from the display. Only those regions covered by exons, both coding and noncoding, are left in the display. For more on the multi-region display see the user guide: http://genome.ucsc.edu/goldenPath/help/multiRegionHelp.html.
Author: mspeir
Session Name: hg38_exonOnlyExample
Genome Assembly: hg38
Creation Date: 2016-06-21
Views: 175
1466434800 175
Screenshot not available
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Description:
Author: lijin
Session Name: session1 Liver 97L exp meth
Genome Assembly: hg19
Creation Date: 2016-04-17
Views: 151
1460818800 151
Screenshot not available
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Description:
Author: lijin
Session Name: session4 plus h3k27ac density andpeaks
Genome Assembly: hg19
Creation Date: 2016-04-28
Views: 147
1461769200 147
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Description:
Author: lijin
Session Name: session3 plus h3k27ac
Genome Assembly: hg19
Creation Date: 2016-04-28
Views: 138
1461769200 138
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Description:
Author: ARKLAB_iwoo
Session Name: arklab_hg19_hemo_demonstration
Genome Assembly: hg19
Creation Date: 2017-03-31
Views: 264
1490886000 264
Description: This session displays a region of the LHX6 gene that highlights a selection of the new tracks added in the previous year for the hg38/GRCh38 human assembly. The tracks shown in this display (from top to bottom) include GENCODE Genes V22, transcription levels assayed across 9 ENCODE cell lines, DNase hypersensitive regions based on data from 95 ENCODE cell lines, genome-wide conservation scores calculated using phastCons, a multiple genome alignment created using Lastz and Multiz, and pathogenic CNVs from the ClinGen database. Adapted from Figure 1 in Speir, et al. The UCSC Genome Browser database: 2016 update. Nucleic Acids Res. 2016 Jan 4;44(D1):D717-25: http://nar.oxfordjournals.org/content/44/D1/D717.full
Author: mspeir
Session Name: hg38_NAR_2016_Fig1
Genome Assembly: hg38
Creation Date: 2015-08-11
Views: 198
1439218800 198