Public Sessions
 

Sessions allow users to save snapshots of the Genome Browser and its current configuration, including displayed tracks, position, and custom track data. The Public Sessions tool allows users to easily share those sessions that they deem interesting with the rest of the world's researchers. You can add your own sessions to this list by checking the appropriate box on the Session Management page.

See the Sessions User's Guide for more information.

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Screenshot Session Properties Creation Date Use Count
Description: refTSS coordinates on mouse mm39 genome. More details: https://reftss.riken.jp
Author: MasakiM
Session Name: refTSS on mm39
Genome Assembly: mm39
Creation Date: 2024-01-05
Views: 27
1704380400 27
Description: hemoglobin HBB is a variant of HB which is not very common in populations. HBA is common in all peoples. HBB expresses in white blood cells .
Author: RAJINDERGOLEE
Session Name: hg19-_hemoglobin
Genome Assembly: hg19
Creation Date: 2023-10-08
Views: 37
1696690800 37
Description: refTSS coordinates on human hg38 genome. More details: https://reftss.riken.jp
Author: MasakiM
Session Name: refTSS4 on hg38
Genome Assembly: hg38
Creation Date: 2023-07-03
Views: 80
1688310000 80
Description: The genes HBB and HBD are both expressed in red blood cells , but HBB is also expressed in many other tissues , whereas HBD is expressed in red cells almost exclusively.
Author: yrajat7900
Session Name: hg19_hemoglobin
Genome Assembly: hg19
Creation Date: 2022-02-06
Views: 145
1644073200 145
Description:
Author: bzswmu
Session Name: pf47_part2_new
Genome Assembly: hub_132305_pf47
Creation Date: 2022-01-28
Views: 274
1643295600 274
Description:
Author: bzswmu
Session Name: pf47_part1
Genome Assembly: hub_132305_pf47
Creation Date: 2021-12-16
Views: 623
1639580400 623
Description:
Author: zahra jafari
Session Name: homwork
Genome Assembly: hg19
Creation Date: 2021-12-03
Views: 149
1638457200 149
Description:
Author: BowenYang
Session Name: part 4
Genome Assembly: hg19
Creation Date: 2021-08-31
Views: 283
1630335600 283
Screenshot not available
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Description:
Author: zzhmark
Session Name: germlayer_enh
Genome Assembly: mm10
Creation Date: 2021-03-14
Views: 359
1615647600 359
Screenshot not available
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Description:
Author: chenchuanhuizi
Session Name: TP53
Genome Assembly: hg38
Creation Date: 2021-03-05
Views: 373
1614870000 373
Screenshot not available
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Description:
Author: Aragon
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2021-02-12
Views: 355
1613055600 355
Screenshot not available
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Description:
Author: Aragon
Session Name: hg19_joydip
Genome Assembly: hg19
Creation Date: 2021-02-12
Views: 384
1613055600 384
Screenshot not available
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Description:
Author: SAYANTANI SANTRA
Session Name: hg19 8-2-21
Genome Assembly: hg19
Creation Date: 2021-02-08
Views: 342
1612710000 342
Screenshot not available
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Description:
Author: akhileshwar_namani@yahoo.co.in
Session Name: TXA549CHIPSEQ
Genome Assembly: hg19
Creation Date: 2021-01-17
Views: 344
1610809200 344
Screenshot not available
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Description:
Author: Shadab79
Session Name: shadab
Genome Assembly: hg19
Creation Date: 2020-07-20
Views: 441
1595170800 441
Description:
Author: lkh
Session Name: pol2_subunits
Genome Assembly: mm10
Creation Date: 2019-11-21
Views: 1145
1574262000 1145
Description:
Author: jieMM
Session Name: hg38_FINAL
Genome Assembly: hg38
Creation Date: 2019-11-05
Views: 866
1572879600 866
Description: The latest version of imomdb data, uploaded on April 2020
Author: imomdb
Session Name: imomdb_v0
Genome Assembly: hg19
Creation Date: 2020-04-15
Views: 436
1586876400 436
Description:
Author: QAtester2
Session Name: hg18_SNP
Genome Assembly: hg18
Creation Date: 2019-08-01
Views: 532
1564585200 532
Description:
Author: brianlee
Session Name: hg38_test
Genome Assembly: hg38
Creation Date: 2019-06-11
Views: 515
1560178800 515
Description:
Author: geneHunter23
Session Name: hg19Default
Genome Assembly: hg19
Creation Date: 2019-06-11
Views: 537
1560178800 537
Description:
Author: Lou
Session Name: bosTau9_Interesting
Genome Assembly: bosTau9
Creation Date: 2019-06-08
Views: 609
1559919600 609
Description: This is an interact track type using GeneHancer data.
Author: brianlee
Session Name: InteractSession
Genome Assembly: hg38
Creation Date: 2019-06-07
Views: 549
1559833200 549
Screenshot not available
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Description:
Author: XinDong
Session Name: TAD_with_Hsitone_and_RNAseq
Genome Assembly: hg38
Creation Date: 2019-03-25
Views: 516
1553439600 516
Screenshot not available
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Description:
Author: pdl.tyh
Session Name: hg19_PDL CNV analysis
Genome Assembly: hg19
Creation Date: 2018-12-29
Views: 1091
1546009200 1091
Screenshot not available
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Description:
Author: QAtester3
Session Name: genomeAsia
Genome Assembly: hub_80308_linHum0
Creation Date: 2018-12-22
Views: 489
1545404400 489
Screenshot not available
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Description:
Author: malaysia2018
Session Name: hg19_UPD2
Genome Assembly: hg19
Creation Date: 2018-08-29
Views: 527
1535468400 527
Screenshot not available
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Description:
Author: malaysia2018
Session Name: hg19_UPD
Genome Assembly: hg19
Creation Date: 2018-08-29
Views: 1253
1535468400 1253
Screenshot not available
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Description:
Author: maskyjg
Session Name: hg19_TRPS1_ChIPSeq
Genome Assembly: hg38
Creation Date: 2018-08-08
Views: 462
1533654000 462
Description:
Author: lipan
Session Name: hg38_dynamics
Genome Assembly: hg38
Creation Date: 2018-07-13
Views: 1915
1531407600 1915
Description:
Author: lipan
Session Name: mm10_dynamics
Genome Assembly: mm10
Creation Date: 2018-07-13
Views: 1083
1531407600 1083
Screenshot not available
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Description:
Author: Lin Xia
Session Name: hg19 HEK293T
Genome Assembly: hg19
Creation Date: 2018-05-10
Views: 655
1525878000 655
Screenshot not available
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Description:
Author: cehnouz
Session Name: hg19
Genome Assembly: hg19
Creation Date: 2017-08-25
Views: 538
1503586800 538
Screenshot not available
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Description: We have recently released a file type called "longTabix" which supports inter & intra-chromosomal interactions by drawing an "arc" among paired regions in the UCSC Genome Browser. Note the first track at the top of the display, you can click on any of the "arcs" or interaction connections to see details such as ID and score. Credit goes to Cath Tyner for the creation of this session. Link to the original question: https://groups.google.com/a/soe.ucsc.edu/d/msg/genome/kE2pIZUvfnA/jfopk7pFAQAJ
Author: PublicSessions
Session Name: Viewing inter- & intra-chromosomal interactions
Genome Assembly: hg19
Creation Date: 2017-03-22
Views: 492
1490108400 492
Screenshot not available
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Description:
Author: vivekgopalanmedgenome
Session Name: MSH3_DHFR_region2
Genome Assembly: hg19
Creation Date: 2016-09-21
Views: 533
1474383600 533
Screenshot not available
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Description:
Author: vivekgopalanmedgenome
Session Name: MSH3_DHFR_region1
Genome Assembly: hg19
Creation Date: 2016-09-21
Views: 546
1474383600 546
Screenshot not available
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Description:
Author: vivekgopalanmedgenome
Session Name: MSH3_DHFR_region
Genome Assembly: hg19
Creation Date: 2016-09-21
Views: 489
1474383600 489
Description: This session demonstrates the GTEx track on the human assembly hg19. The GTEx track shows data from the NIH Genotype-Tissue Expression project and displays expression data for each gene, based on GENCODE gene models, from 51 tissues collected from 570 individual. This session also demonstrates the gene-only mode of the multi-region feature, which removes intergenic regions from the display.
Author: mspeir
Session Name: hg19_gtexAnnouncement
Genome Assembly: hg19
Creation Date: 2016-06-24
Views: 516
1466694000 516
Description: Session highlights a mouse-specific repeat on chromosome 12. You can see the gap in the 60-way vertebrate alignment surrounding the repeat, which is highlighted in light blue. The repeat is classified as a LINE and is part of the L1 family of repeats. Additionally, on the far right-hand side of the display, you can see the retrotransposed Bf3 gene.
Author: mspeir
Session Name: mm10_MouseSpecificRepeat_plus_RetroposedGene
Genome Assembly: mm10
Creation Date: 2016-05-24
Views: 499
1464015600 499
Description: Session displays the promoter region of DARC on human assembly hg19 including UCSC Genes, dbSNP 146 (Common subset) and the Publications track showing sequences and SNPs text-mined from PubMed Central and Elsevier. Adapted from Figure 1 in Meyer, et al. The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res. 2013 Jan;41(Database issue):D64-9: http://nar.oxfordjournals.org/content/41/D1/D64.long.
Author: mspeir
Session Name: hg19_NAR_2013_Fig1
Genome Assembly: hg19
Creation Date: 2016-05-24
Views: 529
1464015600 529
Description: Session displays the dyskeratosis congenita 1 (DKC1) gene using the exon-only multi-region mode in the human assembly hg38. Alongside the gene structure, tracks displaying dbSNP "flagged" variants, OMIM clinical variants, ENCODE transcription levels from 9 cell lines, a 100-way vertebrate alignment (only a subset of species displayed), and conservation scores calculated using phyloP across this 100-way alignment.
Author: mspeir
Session Name: hg38_DKC1_SNPs_Cons_Transcription
Genome Assembly: hg38
Creation Date: 2016-05-24
Views: 541
1464015600 541
Description: Session displays the promoter region and transcription start of IRF1 on human assembly hg19 showing UCSC Genes, 1000 Genomes Phase 3 Integrated Variant Calls in the haplotype sorting VCF display mode, histone mark H3K27Ac binding in overlays of 7 ENCODE cell lines and PhyloP conservation scores from alignments of 100 vertebrates. Adapted from Figure 2 in Meyer, et al. The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res. 2013 Jan;41(Database issue):D64-9: http://nar.oxfordjournals.org/content/41/D1/D64.long.
Author: mspeir
Session Name: hg19_NAR_2013_Fig2
Genome Assembly: hg19
Creation Date: 2016-05-24
Views: 624
1464015600 624
Screenshot not available
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Description:
Author: lijin
Session Name: session6 lung specific enhancer example
Genome Assembly: hg19
Creation Date: 2016-04-29
Views: 468
1461855600 468
Screenshot not available
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Description:
Author: lijin
Session Name: session2 four types
Genome Assembly: hg19
Creation Date: 2016-04-17
Views: 471
1460818800 471
Screenshot not available
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Description:
Author: lijin
Session Name: test
Genome Assembly: hg19
Creation Date: 2016-04-16
Views: 497
1460732400 497
Screenshot not available
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Description:
Author: lijin
Session Name: session5 whole genome methy
Genome Assembly: hg19
Creation Date: 2016-04-29
Views: 476
1461855600 476
Description:
Author: mspeir
Session Name: hg19_CAGrepeat
Genome Assembly: hg19
Creation Date: 2016-06-21
Views: 489
1466434800 489
Description:
Author: mspeir
Session Name: hg19_wobble
Genome Assembly: hg19
Creation Date: 2016-06-21
Views: 524
1466434800 524
Description: This session is demonstrating the exon-only mode of the multi-region feature. The exon-only mode uses the GENCODE v22 track to slice up the normal display and remove both intronic and intergenic regions from the display. Only those regions covered by exons, both coding and noncoding, are left in the display. For more on the multi-region display see the user guide: http://genome.ucsc.edu/goldenPath/help/multiRegionHelp.html.
Author: mspeir
Session Name: hg38_exonOnlyExample
Genome Assembly: hg38
Creation Date: 2016-06-21
Views: 475
1466434800 475
Screenshot not available
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Description:
Author: lijin
Session Name: session1 Liver 97L exp meth
Genome Assembly: hg19
Creation Date: 2016-04-17
Views: 477
1460818800 477
Screenshot not available
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Description:
Author: lijin
Session Name: session4 plus h3k27ac density andpeaks
Genome Assembly: hg19
Creation Date: 2016-04-28
Views: 478
1461769200 478
Screenshot not available
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Description:
Author: lijin
Session Name: session3 plus h3k27ac
Genome Assembly: hg19
Creation Date: 2016-04-28
Views: 583
1461769200 583
Screenshot not available
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Description:
Author: ARKLAB_iwoo
Session Name: arklab_hg19_hemo_demonstration
Genome Assembly: hg19
Creation Date: 2017-03-31
Views: 582
1490886000 582
Description: This session shows a search of primers. A researcher had an issue building PCR primers and Browser staff discovered that a desired reverse primer falls into an area of repeats.  The original primer at 20 bases was near the limit of BLAT's sensitivity. With such short sequences, if BLAT has an over-used tile, a section of the query used to match and trigger an alignment, the algorithm will not be able to seed and extend an original BLAT hit in an area of repeats, which was what was likely happening to the reverse primer sequence in this session. In the session a larger BLAT query will result in a hit. Since primers are typically chosen from unique locations, Browser staff suggested it might be best to avoid a repeat-region, and noted that the nearby chr13:50,593,214-50,593,267 section appears to not have any repeats.
Author: brianlee
Session Name: Primers Blat Search
Genome Assembly: hg19
Creation Date: 2013-07-23
Views: 83
1374505200 83
Description: This session displays a region of the LHX6 gene that highlights a selection of the new tracks added in the previous year for the hg38/GRCh38 human assembly. The tracks shown in this display (from top to bottom) include GENCODE Genes V22, transcription levels assayed across 9 ENCODE cell lines, DNase hypersensitive regions based on data from 95 ENCODE cell lines, genome-wide conservation scores calculated using phastCons, a multiple genome alignment created using Lastz and Multiz, and pathogenic CNVs from the ClinGen database. Adapted from Figure 1 in Speir, et al. The UCSC Genome Browser database: 2016 update. Nucleic Acids Res. 2016 Jan 4;44(D1):D717-25: http://nar.oxfordjournals.org/content/44/D1/D717.full
Author: mspeir
Session Name: hg38_NAR_2016_Fig1
Genome Assembly: hg38
Creation Date: 2015-08-11
Views: 528
1439218800 528